CANDIDATE ID: 253

CANDIDATE ID: 253

NUMBER OF GENES: 8
AVERAGE SCORE:    9.9951171e-1 (range=[0.0,1.0])
AVERAGE MINIMUM BLAST P-VAL:    1.0000000e+0

Gene List
List of organisms containing most genes from the group
    Phylogenetic tree highlighting these organisms (opens new page)
List of organisms containing very few or no genes from the group
List of organisms enriched for group
List of organisms depleted for group
Phylogenetic profile similarity with known pathways
Pairwise genome context scores
Pairwise Blast scores
Pathway or protein complex matches in target organism
Genome context matrix
    Genes and their orthologs in genome browser BioCyc pages




GENE LIST:

- G7321 (yfgM) (b2513)
   Products of gene:
     - G7321-MONOMER (conserved protein)

- G7320 (bamB) (bamB)
   Products of gene:
     - G7320-MONOMER (BamB)
     - CPLX0-3933 (Outer Membrane Protein Assembly Complex)

- G7319 (der) (b2511)
   Products of gene:
     - G7319-MONOMER (50S ribosomal subunit stability factor)
       Reactions:
        GTP + H2O  ->  GDP + phosphate + H+

- EG12401 (rlmN) (b2517)
   Products of gene:
     - EG12401-MONOMER (23S rRNA m2A2503 methyltransferase)
       Reactions:
        S-adenosyl-L-methionine + adenine2503 in 23S rRNA  ->  S-adenosyl-L-homocysteine + 2-methyladenine2503 in 23S rRNA

- EG11072 (xseA) (b2509)
   Products of gene:
     - EG11072-MONOMER (exonuclease VII, large subunit)
     - CPLX-3946 (exonuclease VII)
       Reactions:
        EC# 3.1.11.6

- EG10453 (hisS) (b2514)
   Products of gene:
     - HISS-MONOMER (histidyl-tRNA synthetase)
     - HISS-CPLX (histidyl-tRNA synthetase)
       Reactions:
        tRNAhis + L-histidine + ATP  ->  L-histidyl-tRNAhis + diphosphate + AMP
         In pathways
         TRNA-CHARGING-PWY (tRNA charging pathway)

- EG10370 (ispG) (b2515)
   Products of gene:
     - EG10370-MONOMER (1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase)
       Reactions:
        2-C-methyl-D-erythritol-2,4-cyclodiphosphate + 2 a reduced ferredoxin  ->  1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate + 2 an oxidized ferredoxin + H2O
         In pathways
         PWY-5121 (PWY-5121)
         PWY-6270 (PWY-6270)
         NONMEVIPP-PWY (methylerythritol phosphate pathway)

- EG10015 (rodZ) (b2516)
   Products of gene:
     - EG10015-MONOMER (rod shape-determining membrane protein)



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ORGANISMS CONTAINING AT LEAST 7 GENES FROM THE GROUP:

Total number of orgs: 140
Effective number of orgs (counting one per cluster within 468 clusters): 92

Organism list
Homologs in each organism in the list
Features enriched in organism list


Follow (ncbi) link, when present, to find the set of organism features for each organism
Org ID  Org Name  # genes in group found in org  
YPSE349747 ncbi Yersinia pseudotuberculosis IP 317588
YPSE273123 ncbi Yersinia pseudotuberculosis IP 329538
YPES386656 ncbi Yersinia pestis Pestoides F8
YPES377628 ncbi Yersinia pestis Nepal5168
YPES360102 ncbi Yersinia pestis Antiqua8
YPES349746 ncbi Yersinia pestis Angola8
YPES214092 ncbi Yersinia pestis CO928
YPES187410 ncbi Yersinia pestis KIM 108
YENT393305 ncbi Yersinia enterocolitica enterocolitica 80818
XORY360094 ncbi Xanthomonas oryzae pv. oryzae PXO99A7
XORY342109 ncbi Xanthomonas oryzae pv. oryzae MAFF 3110187
XORY291331 ncbi Xanthomonas oryzae pv. oryzae KACC103317
XAXO190486 ncbi Xanthomonas axonopodis pv. citri str. 3067
VVUL216895 ncbi Vibrio vulnificus CMCP68
VVUL196600 ncbi Vibrio vulnificus YJ0168
VPAR223926 ncbi Vibrio parahaemolyticus RIMD 22106338
VFIS312309 ncbi Vibrio fischeri ES1148
VCHO345073 ncbi Vibrio cholerae O3958
VCHO ncbi Vibrio cholerae O1 biovar El Tor str. N169618
TTUR377629 ncbi Teredinibacter turnerae T79017
TDEN292415 ncbi Thiobacillus denitrificans ATCC 252598
STYP99287 ncbi Salmonella enterica enterica serovar Typhimurium str. LT28
SSP94122 ncbi Shewanella sp. ANA-38
SSON300269 ncbi Shigella sonnei Ss0468
SSED425104 ncbi Shewanella sediminis HAW-EB38
SPRO399741 ncbi Serratia proteamaculans 5688
SPEA398579 ncbi Shewanella pealeana ATCC 7003458
SONE211586 ncbi Shewanella oneidensis MR-18
SLOI323850 ncbi Shewanella loihica PV-48
SHIGELLA ncbi Shigella flexneri 2a str. 2457T8
SHAL458817 ncbi Shewanella halifaxensis HAW-EB48
SGLO343509 ncbi Sodalis glossinidius morsitans8
SFLE373384 ncbi Shigella flexneri 5 str. 84018
SFLE198214 ncbi Shigella flexneri 2a str. 3018
SENT454169 ncbi Salmonella enterica enterica serovar Heidelberg str. SL4768
SENT321314 ncbi Salmonella enterica enterica serovar Choleraesuis str. SC-B678
SENT295319 ncbi Salmonella enterica enterica serovar Paratyphi A str. ATCC 91508
SENT220341 ncbi Salmonella enterica enterica serovar Typhi str. CT188
SENT209261 ncbi Salmonella enterica enterica serovar Typhi str. Ty28
SDYS300267 ncbi Shigella dysenteriae Sd1978
SDEN318161 ncbi Shewanella denitrificans OS2178
SDEG203122 ncbi Saccharophagus degradans 2-408
SBOY300268 ncbi Shigella boydii Sb2278
SBAL402882 ncbi Shewanella baltica OS1858
SBAL399599 ncbi Shewanella baltica OS1958
RSOL267608 ncbi Ralstonia solanacearum GMI10007
RMET266264 ncbi Ralstonia metallidurans CH348
RFER338969 ncbi Rhodoferax ferrireducens T1187
REUT381666 ncbi Ralstonia eutropha H168
REUT264198 ncbi Ralstonia eutropha JMP1348
PSYR223283 ncbi Pseudomonas syringae pv. tomato str. DC30008
PSYR205918 ncbi Pseudomonas syringae pv. syringae B728a8
PSTU379731 ncbi Pseudomonas stutzeri A15018
PSP296591 ncbi Polaromonas sp. JS6667
PPUT76869 ncbi Pseudomonas putida GB-18
PPUT351746 ncbi Pseudomonas putida F18
PPUT160488 ncbi Pseudomonas putida KT24408
PPRO298386 ncbi Photobacterium profundum SS98
PMUL272843 ncbi Pasteurella multocida multocida Pm707
PMEN399739 ncbi Pseudomonas mendocina ymp8
PLUM243265 ncbi Photorhabdus luminescens laumondii TTO18
PING357804 ncbi Psychromonas ingrahamii 378
PHAL326442 ncbi Pseudoalteromonas haloplanktis TAC1258
PFLU220664 ncbi Pseudomonas fluorescens Pf-58
PFLU216595 ncbi Pseudomonas fluorescens SBW258
PFLU205922 ncbi Pseudomonas fluorescens Pf0-18
PENT384676 ncbi Pseudomonas entomophila L488
PATL342610 ncbi Pseudoalteromonas atlantica T6c8
PAER208964 ncbi Pseudomonas aeruginosa PAO18
PAER208963 ncbi Pseudomonas aeruginosa UCBPP-PA148
NOCE323261 ncbi Nitrosococcus oceani ATCC 197077
NMUL323848 ncbi Nitrosospira multiformis ATCC 251967
NEUT335283 ncbi Nitrosomonas eutropha C918
NEUR228410 ncbi Nitrosomonas europaea ATCC 197188
MSUC221988 ncbi Mannheimia succiniciproducens MBEL55E7
MSP400668 ncbi Marinomonas sp. MWYL18
MPET420662 ncbi Methylibium petroleiphilum PM18
MFLA265072 ncbi Methylobacillus flagellatus KT8
MCAP243233 ncbi Methylococcus capsulatus Bath8
MAQU351348 ncbi Marinobacter aquaeolei VT88
LPNE400673 ncbi Legionella pneumophila Corby7
LPNE297246 ncbi Legionella pneumophila Paris7
LPNE297245 ncbi Legionella pneumophila Lens7
LPNE272624 ncbi Legionella pneumophila pneumophila Philadelphia 17
LCHO395495 ncbi Leptothrix cholodnii SP-67
KPNE272620 ncbi Klebsiella pneumoniae pneumoniae MGH 785788
JSP375286 ncbi Janthinobacterium sp. Marseille8
ILOI283942 ncbi Idiomarina loihiensis L2TR8
HSOM228400 ncbi Haemophilus somnus 23367
HSOM205914 ncbi Haemophilus somnus 129PT7
HINF71421 ncbi Haemophilus influenzae Rd KW207
HINF374930 ncbi Haemophilus influenzae PittEE7
HINF281310 ncbi Haemophilus influenzae 86-028NP7
HHAL349124 ncbi Halorhodospira halophila SL18
HCHE349521 ncbi Hahella chejuensis KCTC 23968
HARS204773 ncbi Herminiimonas arsenicoxydans7
ESP42895 Enterobacter sp.8
EFER585054 ncbi Escherichia fergusonii ATCC 354698
ECOO157 ncbi Escherichia coli O157:H7 EDL9338
ECOL83334 Escherichia coli O157:H78
ECOL585397 ncbi Escherichia coli ED1a8
ECOL585057 ncbi Escherichia coli IAI398
ECOL585056 ncbi Escherichia coli UMN0268
ECOL585055 ncbi Escherichia coli 559898
ECOL585035 ncbi Escherichia coli S888
ECOL585034 ncbi Escherichia coli IAI18
ECOL481805 ncbi Escherichia coli ATCC 87398
ECOL469008 ncbi Escherichia coli BL21(DE3)8
ECOL439855 ncbi Escherichia coli SMS-3-58
ECOL413997 ncbi Escherichia coli B str. REL6068
ECOL409438 ncbi Escherichia coli SE118
ECOL405955 ncbi Escherichia coli APEC O18
ECOL364106 ncbi Escherichia coli UTI898
ECOL362663 ncbi Escherichia coli 5368
ECOL331111 ncbi Escherichia coli E24377A7
ECOL316407 ncbi Escherichia coli K-12 substr. W31108
ECOL199310 ncbi Escherichia coli CFT0738
ECAR218491 ncbi Pectobacterium atrosepticum SCRI10438
DARO159087 ncbi Dechloromonas aromatica RCB8
CVIO243365 ncbi Chromobacterium violaceum ATCC 124727
CSAL290398 ncbi Chromohalobacter salexigens DSM 30438
CPSY167879 ncbi Colwellia psychrerythraea 34H8
CJAP155077 Cellvibrio japonicus8
BVIE269482 ncbi Burkholderia vietnamiensis G47
BSP36773 Burkholderia sp.7
BCEN331272 ncbi Burkholderia cenocepacia HI24247
BCEN331271 ncbi Burkholderia cenocepacia AU 10547
BAMB398577 ncbi Burkholderia ambifaria MC40-67
BAMB339670 ncbi Burkholderia ambifaria AMMD7
ASP76114 ncbi Aromatoleum aromaticum EbN18
ASP62977 ncbi Acinetobacter sp. ADP17
ASP62928 ncbi Azoarcus sp. BH728
ASAL382245 ncbi Aeromonas salmonicida salmonicida A4498
APLE416269 ncbi Actinobacillus pleuropneumoniae L207
AHYD196024 Aeromonas hydrophila dhakensis8
AFER243159 ncbi Acidithiobacillus ferrooxidans ATCC 232708
AEHR187272 ncbi Alkalilimnicola ehrlichii MLHE-17
ACRY349163 ncbi Acidiphilium cryptum JF-57
ABOR393595 ncbi Alcanivorax borkumensis SK28
AAVE397945 ncbi Acidovorax citrulli AAC00-17


Names of the homologs of the genes in the group in each of these orgs
  G7321   G7320   G7319   EG12401   EG11072   EG10453   EG10370   EG10015   
YPSE349747 YPSIP31758_1188YPSIP31758_1189YPSIP31758_1190YPSIP31758_1183YPSIP31758_1193YPSIP31758_1187YPSIP31758_1186YPSIP31758_1185
YPSE273123 YPTB2839YPTB2838YPTB2837YPTB2844YPTB2834YPTB2840YPTB2841YPTB2842
YPES386656 YPDSF_2222YPDSF_2221YPDSF_2220YPDSF_2227YPDSF_2217YPDSF_2223YPDSF_2224YPDSF_2225
YPES377628 YPN_1261YPN_1262YPN_1263YPN_1256YPN_1266YPN_1260YPN_1259YPN_1258
YPES360102 YPA_2317YPA_2316YPA_2315YPA_2322YPA_2313YPA_2318YPA_2319YPA_2320
YPES349746 YPANGOLA_A0416YPANGOLA_A0415YPANGOLA_A0414YPANGOLA_A0421YPANGOLA_A0410YPANGOLA_A0417YPANGOLA_A0418YPANGOLA_A0419
YPES214092 YPO2877YPO2876YPO2875YPO2882YPO2872YPO2878YPO2879YPO2880
YPES187410 Y1355Y1356Y1357Y1350Y1361Y1354Y1353Y1352
YENT393305 YE1075YE1076YE1077YE1070YE1080YE1074YE1073YE1072
XORY360094 XOOORF_2760XOOORF_2759XOOORF_2758XOOORF_2763XOOORF_1975XOOORF_2447XOOORF_2761
XORY342109 XOO2389XOO2388XOO2387XOO2392XOO2582XOO2095XOO2390
XORY291331 XOO2531XOO2530XOO2529XOO2534XOO2737XOO2229XOO2532
XAXO190486 XAC2019XAC2020XAC2021XAC2016XAC2410XAC1799XAC2018
VVUL216895 VV1_0425VV1_0424VV1_0423VV1_0429VV1_0420VV1_0426VV1_0427VV1_0428
VVUL196600 VV0768VV0769VV0770VV0764VV0774VV0767VV0766VV0765
VPAR223926 VP0610VP0611VP0612VP0605VP0615VP0609VP0608VP0607
VFIS312309 VF0631VF0632VF0633VF0626VF0636VF0630VF0629VF0628
VCHO345073 VC0395_A0290VC0395_A0291VC0395_A0292VC0395_A0286VC0395_A0294VC0395_A0289VC0395_A0288VC0395_A0287
VCHO VC0761VC0762VC0763VC0757VC0766VC0760VC0759VC0758
TTUR377629 TERTU_2632TERTU_2631TERTU_2630TERTU_2636TERTU_2618TERTU_2633TERTU_2634
TDEN292415 TBD_0596TBD_0597TBD_0598TBD_0591TBD_1511TBD_0595TBD_0594TBD_0593
STYP99287 STM2521STM2520STM2519STM2525STM2512STM2522STM2523STM2524
SSP94122 SHEWANA3_1231SHEWANA3_1232SHEWANA3_1233SHEWANA3_1226SHEWANA3_1234SHEWANA3_1230SHEWANA3_1229SHEWANA3_1228
SSON300269 SSO_2595SSO_2594SSO_2593SSO_2599SSO_2591SSO_2596SSO_2597SSO_2598
SSED425104 SSED_1434SSED_1435SSED_1436SSED_1429SSED_3125SSED_1433SSED_1432SSED_1431
SPRO399741 SPRO_3607SPRO_3606SPRO_3605SPRO_3612SPRO_3597SPRO_3608SPRO_3609SPRO_3610
SPEA398579 SPEA_1307SPEA_1308SPEA_1309SPEA_1302SPEA_1312SPEA_1306SPEA_1305SPEA_1304
SONE211586 SO_3310SO_3309SO_3308SO_3315SO_3294SO_3311SO_3312SO_3313
SLOI323850 SHEW_1292SHEW_1293SHEW_1294SHEW_1287SHEW_1296SHEW_1291SHEW_1290SHEW_1289
SHIGELLA S2731S2730S2729YFGBXSEAHISSGCPEYFGA
SHAL458817 SHAL_1369SHAL_1370SHAL_1371SHAL_1364SHAL_1375SHAL_1368SHAL_1367SHAL_1366
SGLO343509 SG1758SG1757SG1756SG1763SG1750SG1759SG1760SG1761
SFLE373384 SFV_2560SFV_2559SFV_2558SFV_2564SFV_2556SFV_2561SFV_2562SFV_2563
SFLE198214 AAN44059.1AAN44058.1AAN44057.1AAN44063.1AAN44055.1AAN44060.1AAN44061.1AAN44062.1
SENT454169 SEHA_C2778SEHA_C2777SEHA_C2776SEHA_C2783SEHA_C2768SEHA_C2779SEHA_C2781SEHA_C2782
SENT321314 SCH_2518SCH_2517SCH_2516SCH_2522SCH_2510SCH_2519SCH_2520SCH_2521
SENT295319 SPA0346SPA0347SPA0348SPA0342SPA0355SPA0345SPA0344SPA0343
SENT220341 STY2766STY2765STY2764STY2770STY2753STY2767STY2768STY2769
SENT209261 T0335T0336T0337T0331T0345T0334T0333T0332
SDYS300267 SDY_2709SDY_2708SDY_2707SDY_2713SDY_2705SDY_2710SDY_2711SDY_2712
SDEN318161 SDEN_1258SDEN_1259SDEN_1260SDEN_1253SDEN_1268SDEN_1257SDEN_1256SDEN_1255
SDEG203122 SDE_1436SDE_1437SDE_1438SDE_1431SDE_1458SDE_1435SDE_1434SDE_1433
SBOY300268 SBO_2537SBO_2536SBO_2535SBO_2541SBO_2533SBO_2538SBO_2539SBO_2540
SBAL402882 SHEW185_3003SHEW185_3002SHEW185_3001SHEW185_3008SHEW185_3000SHEW185_3004SHEW185_3005SHEW185_3006
SBAL399599 SBAL195_3146SBAL195_3145SBAL195_3144SBAL195_3151SBAL195_3143SBAL195_3147SBAL195_3148SBAL195_3149
RSOL267608 RSC1217RSC1218RSC1219RSC1212RSC2527RSC1216RSC1214
RMET266264 RMET_2104RMET_2103RMET_2102RMET_2109RMET_0538RMET_2105RMET_2106RMET_2107
RFER338969 RFER_2305RFER_2304RFER_2303RFER_2310RFER_3152RFER_2306RFER_2307
REUT381666 H16_A2362H16_A2361H16_A2360H16_A2367H16_A0609H16_A2363H16_A2364H16_A2365
REUT264198 REUT_A2084REUT_A2083REUT_A2082REUT_A2089REUT_A0596REUT_A2085REUT_A2086REUT_A2087
PSYR223283 PSPTO_1436PSPTO_1437PSPTO_1438PSPTO_1431PSPTO_1446PSPTO_1435PSPTO_1434PSPTO_1433
PSYR205918 PSYR_1250PSYR_1251PSYR_1252PSYR_1245PSYR_1259PSYR_1249PSYR_1248PSYR_1247
PSTU379731 PST_3029PST_3028PST_3027PST_3034PST_3010PST_3030PST_3031PST_3032
PSP296591 BPRO_2606BPRO_2605BPRO_2604BPRO_2611BPRO_2946BPRO_2607BPRO_2609
PPUT76869 PPUTGB1_0898PPUTGB1_0899PPUTGB1_0900PPUTGB1_0893PPUTGB1_1025PPUTGB1_0897PPUTGB1_0896PPUTGB1_0895
PPUT351746 PPUT_0885PPUT_0886PPUT_0887PPUT_0880PPUT_1067PPUT_0884PPUT_0883PPUT_0882
PPUT160488 PP_0855PP_0856PP_0857PP_0850PP_1027PP_0854PP_0853PP_0852
PPRO298386 PBPRA0765PBPRA0766PBPRA0767PBPRA0760PBPRA0779PBPRA0764PBPRA0763PBPRA0762
PMUL272843 PM2012PM0105PM2007PM0168PM2011PM2010PM2009
PMEN399739 PMEN_3498PMEN_3497PMEN_3496PMEN_3503PMEN_3490PMEN_3499PMEN_3500PMEN_3501
PLUM243265 PLU1378PLU1379PLU1380PLU1373PLU2714PLU1377PLU1376PLU1375
PING357804 PING_1170PING_1171PING_1172PING_1165PING_2951PING_1169PING_1168PING_1167
PHAL326442 PSHAB0136PSHAB0135PSHAB0134PSHAB0141PSHAA0647PSHAB0137PSHAB0138PSHAB0139
PFLU220664 PFL_4952PFL_4951PFL_4950PFL_4957PFL_4944PFL_4953PFL_4954PFL_4955
PFLU216595 PFLU5055PFLU5054PFLU5053PFLU5060PFLU5048PFLU5056PFLU5057PFLU5058
PFLU205922 PFL_4599PFL_4598PFL_4597PFL_4604PFL_4592PFL_4600PFL_4601PFL_4602
PENT384676 PSEEN1023PSEEN1024PSEEN1025PSEEN1018PSEEN4397PSEEN1022PSEEN1021PSEEN1020
PATL342610 PATL_3124PATL_3123PATL_3122PATL_3129PATL_3121PATL_3125PATL_3126PATL_3127
PAER208964 PA3801PA3800PA3799PA3806PA3777PA3802PA3803PA3804
PAER208963 PA14_14900PA14_14910PA14_14930PA14_14830PA14_15230PA14_14890PA14_14880PA14_14860
NOCE323261 NOC_0820NOC_0821NOC_0822NOC_0900NOC_0612NOC_0902NOC_1749
NMUL323848 NMUL_A2375NMUL_A2374NMUL_A2373NMUL_A2379NMUL_A1030NMUL_A2376NMUL_A2378
NEUT335283 NEUT_2166NEUT_2165NEUT_2164NEUT_2171NEUT_1510NEUT_2167NEUT_2168NEUT_2169
NEUR228410 NE0151NE0152NE0153NE0145NE1172NE0150NE0148NE0147
MSUC221988 MS1921MS0734MS1916MS0560MS1920MS1919MS1918
MSP400668 MMWYL1_1358MMWYL1_1359MMWYL1_1360MMWYL1_1353MMWYL1_4149MMWYL1_1357MMWYL1_1356MMWYL1_1355
MPET420662 MPE_A1994MPE_A1993MPE_A1992MPE_A1999MPE_A2482MPE_A1995MPE_A1996MPE_A1997
MFLA265072 MFLA_1616MFLA_1615MFLA_1614MFLA_1623MFLA_1863MFLA_1619MFLA_1620MFLA_1621
MCAP243233 MCA_2890MCA_2891MCA_2892MCA_2887MCA_1818MCA_2889MCA_2483MCA_1363
MAQU351348 MAQU_1129MAQU_1130MAQU_1131MAQU_1124MAQU_1729MAQU_1128MAQU_1127MAQU_1126
LPNE400673 LPC_0964LPC_0963LPC_0962LPC_0968LPC_2470LPC_0965LPC_0966
LPNE297246 LPP1500LPP1499LPP1498LPP1504LPP0888LPP1501LPP1502
LPNE297245 LPL1483LPL1484LPL1485LPL1479LPL0857LPL1482LPL1481
LPNE272624 LPG1543LPG1542LPG1541LPG1547LPG0826LPG1544LPG1545
LCHO395495 LCHO_2866LCHO_2865LCHO_2864LCHO_2871LCHO_2552LCHO_2867LCHO_2869
KPNE272620 GKPORF_B2176GKPORF_B2175GKPORF_B2174GKPORF_B2181GKPORF_B2172GKPORF_B2177GKPORF_B2178GKPORF_B2179
JSP375286 MMA_2125MMA_2124MMA_2123MMA_2130MMA_2585MMA_2126MMA_2127MMA_2128
ILOI283942 IL2032IL2031IL2030IL2037IL2012IL2033IL2034IL2035
HSOM228400 HSM_0731HSM_0290HSM_0364HSM_0347HSM_0730HSM_0729HSM_0728
HSOM205914 HS_0406HS_1325HS_1198HS_1216HS_0405HS_0404HS_0403
HINF71421 HI_0370HI_0136HI_0365HI_0397HI_0369HI_0368HI_0367
HINF374930 CGSHIEE_01155CGSHIEE_02605CGSHIEE_01185CGSHIEE_01010CGSHIEE_01160CGSHIEE_01170CGSHIEE_01175
HINF281310 NTHI0490NTHI0222NTHI0485NTHI0518NTHI0489NTHI0488NTHI0487
HHAL349124 HHAL_1787HHAL_1786HHAL_0591HHAL_1791HHAL_1683HHAL_1788HHAL_0132HHAL_1789
HCHE349521 HCH_04454HCH_04453HCH_04452HCH_04459HCH_04944HCH_04455HCH_04456HCH_04457
HARS204773 HEAR1266HEAR1267HEAR1268HEAR1261HEAR2497HEAR1265HEAR1264
ESP42895 ENT638_3007ENT638_3006ENT638_3005ENT638_3011ENT638_3000ENT638_3008ENT638_3009ENT638_3010
EFER585054 EFER_0659EFER_0660EFER_0661EFER_0655EFER_0666EFER_0658EFER_0657EFER_0656
ECOO157 Z3776Z3775Z3774YFGBXSEAHISSGCPEYFGA
ECOL83334 ECS3375ECS3374ECS3373ECS3379ECS3371ECS3376ECS3377ECS3378
ECOL585397 ECED1_2944ECED1_2943ECED1_2942ECED1_2948ECED1_2933ECED1_2945ECED1_2946ECED1_2947
ECOL585057 ECIAI39_2714ECIAI39_2713ECIAI39_2712ECIAI39_2718ECIAI39_2707ECIAI39_2715ECIAI39_2716ECIAI39_2717
ECOL585056 ECUMN_2833ECUMN_2832ECUMN_2831ECUMN_2837ECUMN_2825ECUMN_2834ECUMN_2835ECUMN_2836
ECOL585055 EC55989_2798EC55989_2797EC55989_2796EC55989_2802EC55989_2794EC55989_2799EC55989_2800EC55989_2801
ECOL585035 ECS88_2689ECS88_2688ECS88_2687ECS88_2693ECS88_2681ECS88_2690ECS88_2691ECS88_2692
ECOL585034 ECIAI1_2565ECIAI1_2564ECIAI1_2563ECIAI1_2569ECIAI1_2561ECIAI1_2566ECIAI1_2567ECIAI1_2568
ECOL481805 ECOLC_1164ECOLC_1165ECOLC_1166ECOLC_1160ECOLC_1168ECOLC_1163ECOLC_1162ECOLC_1161
ECOL469008 ECBD_1173ECBD_1174ECBD_1175ECBD_1169ECBD_1177ECBD_1172ECBD_1171ECBD_1170
ECOL439855 ECSMS35_2665ECSMS35_2664ECSMS35_2663ECSMS35_2669ECSMS35_2658ECSMS35_2666ECSMS35_2667ECSMS35_2668
ECOL413997 ECB_02405ECB_02404ECB_02403ECB_02409ECB_02401ECB_02406ECB_02407ECB_02408
ECOL409438 ECSE_2799ECSE_2798ECSE_2797ECSE_2803ECSE_2795ECSE_2800ECSE_2801ECSE_2802
ECOL405955 APECO1_4011APECO1_4012APECO1_4013APECO1_4007APECO1_4017APECO1_4010APECO1_4009APECO1_4008
ECOL364106 UTI89_C2834UTI89_C2833UTI89_C2832UTI89_C2838UTI89_C2827UTI89_C2835UTI89_C2836UTI89_C2837
ECOL362663 ECP_2518ECP_2517ECP_2516ECP_2522ECP_2511ECP_2519ECP_2520ECP_2521
ECOL331111 ECE24377A_2797ECE24377A_2796ECE24377A_2795ECE24377A_2801ECE24377A_2798ECE24377A_2799ECE24377A_2800
ECOL316407 ECK2509:JW2497:B2513ECK2508:JW2496:B2512ECK2507:JW5403:B2511ECK2513:JW2501:B2517ECK2505:JW2493:B2509ECK2510:JW2498:B2514ECK2511:JW2499:B2515ECK2512:JW2500:B2516
ECOL199310 C3035C3034C3033C3039C3028C3036C3037C3038
ECAR218491 ECA3218ECA3217ECA3216ECA3223ECA3210ECA3219ECA3220ECA3221
DARO159087 DARO_2983DARO_2982DARO_2981DARO_2988DARO_3211DARO_2984DARO_2985DARO_2986
CVIO243365 CV_3536CV_3535CV_3534CV_3541CV_3564CV_3537CV_3539
CSAL290398 CSAL_2856CSAL_2857CSAL_2858CSAL_2851CSAL_0718CSAL_2855CSAL_2854CSAL_2853
CPSY167879 CPS_4250CPS_4249CPS_4247CPS_4255CPS_4244CPS_4251CPS_4252CPS_4253
CJAP155077 CJA_1483CJA_1484CJA_1485CJA_1478CJA_2105CJA_1482CJA_1481CJA_1480
BVIE269482 BCEP1808_1737BCEP1808_1736BCEP1808_1735BCEP1808_1741BCEP1808_2637BCEP1808_1738BCEP1808_1740
BSP36773 BCEP18194_A5111BCEP18194_A5110BCEP18194_A5109BCEP18194_A5115BCEP18194_A5875BCEP18194_A5112BCEP18194_A5114
BCEN331272 BCEN2424_1810BCEN2424_1809BCEN2424_1808BCEN2424_1814BCEN2424_2544BCEN2424_1811BCEN2424_1813
BCEN331271 BCEN_6269BCEN_6270BCEN_6271BCEN_6265BCEN_1932BCEN_6268BCEN_6266
BAMB398577 BAMMC406_1721BAMMC406_1720BAMMC406_1719BAMMC406_1725BAMMC406_2462BAMMC406_1722BAMMC406_1724
BAMB339670 BAMB_1748BAMB_1747BAMB_1746BAMB_1752BAMB_2592BAMB_1749BAMB_1751
ASP76114 EBA1259EBA1258EBA1256EBA1268EBA5078EBA1260EBA1261EBA1262
ASP62977 ACIAD0563ACIAD0564ACIAD0565ACIAD0557ACIAD0562ACIAD0561ACIAD0560
ASP62928 AZO0929AZO0930AZO0931AZO0924AZO1467AZO0928AZO0927AZO0926
ASAL382245 ASA_2597ASA_2596ASA_2595ASA_2602ASA_1863ASA_2598ASA_2599ASA_2600
APLE416269 APL_1174APL_0403APL_1274APL_0817APL_1175APL_1176APL_1177
AHYD196024 AHA_1761AHA_1762AHA_1763AHA_1756AHA_1983AHA_1760AHA_1759AHA_1758
AFER243159 AFE_1155AFE_1154AFE_1153AFE_1160AFE_1112AFE_1156AFE_1157AFE_1158
AEHR187272 MLG_1253MLG_1254MLG_0596MLG_1249MLG_0693MLG_1252MLG_1251
ACRY349163 ACRY_0751ACRY_0750ACRY_2700ACRY_1331ACRY_1013ACRY_1012ACRY_1011
ABOR393595 ABO_1858ABO_1857ABO_1856ABO_1863ABO_1852ABO_1859ABO_1860ABO_1861
AAVE397945 AAVE_1426AAVE_1427AAVE_1428AAVE_1421AAVE_2567AAVE_1425AAVE_1423


Organism features enriched in list (features available for 135 out of the 140 orgs in the list)
Feature    Pvalue       Num occurrences in list  Total num occurrences  
Arrangment:Chains 0.0000198792
Disease:Bubonic_plague 0.000141366
Disease:Dysentery 0.000141366
Disease:Gastroenteritis 0.00004651013
Disease:Legionnaire's_disease 0.002777644
Endospores:No 0.000014929211
GC_Content_Range4:0-40 2.570e-1711213
GC_Content_Range4:40-60 1.721e-1287224
GC_Content_Range7:30-40 8.202e-1111166
GC_Content_Range7:40-50 0.009490736117
GC_Content_Range7:50-60 2.819e-1051107
Genome_Size_Range5:0-2 4.313e-173155
Genome_Size_Range5:2-4 0.000013226197
Genome_Size_Range5:4-6 8.024e-2087184
Genome_Size_Range5:6-10 0.00278891947
Genome_Size_Range9:1-2 3.509e-133128
Genome_Size_Range9:2-3 0.000027512120
Genome_Size_Range9:4-5 1.025e-84596
Genome_Size_Range9:5-6 1.966e-84288
Genome_Size_Range9:6-8 0.00043211838
Gram_Stain:Gram_Neg 1.598e-23124333
Habitat:Multiple 0.000353857178
Motility:No 2.474e-118151
Motility:Yes 2.529e-14100267
Optimal_temp.:- 0.006058271257
Oxygen_Req:Anaerobic 9.658e-103102
Oxygen_Req:Facultative 2.803e-1484201
Pathogenic_in:No 0.000617937226
Shape:Coccus 2.701e-8282
Shape:Rod 9.603e-15117347
Shape:Spiral 0.0010537134
Temp._range:Mesophilic 0.0026801120473
Temp._range:Psychrophilic 0.005548969
Temp._range:Thermophilic 0.0008199135



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ORGANISMS CONTAINING AT MOST 1 GENES FROM THE GROUP:

Total number of orgs: 95
Effective number of orgs (counting one per cluster within 468 clusters): 86

Organism list
Homologs in each organism in the list
Features enriched in organism list


Follow (ncbi) link, when present, to find the set of organism features for each organism
Org ID  Org Name  # genes in group found in org  
UURE95667 Ureaplasma urealyticum serovar 130
UURE95664 Ureaplasma urealyticum serovar 100
UPAR505682 ncbi Ureaplasma parvum serovar 3 str. ATCC 278150
UMET351160 ncbi uncultured methanogenic archaeon RC-I1
TWHI218496 ncbi Tropheryma whipplei TW08/271
TWHI203267 ncbi Tropheryma whipplei Twist1
TVOL273116 ncbi Thermoplasma volcanium GSS10
TPEN368408 ncbi Thermofilum pendens Hrk 50
TPAL243276 ncbi Treponema pallidum pallidum Nichols1
TKOD69014 ncbi Thermococcus kodakarensis KOD10
TACI273075 ncbi Thermoplasma acidophilum DSM 17280
STOK273063 ncbi Sulfolobus tokodaii 71
SSOL273057 ncbi Sulfolobus solfataricus P20
SMAR399550 ncbi Staphylothermus marinus F10
SARE391037 ncbi Salinispora arenicola CNS-2051
SACI330779 ncbi Sulfolobus acidocaldarius DSM 6390
RTYP257363 ncbi Rickettsia typhi Wilmington0
RSAL288705 ncbi Renibacterium salmoninarum ATCC 332091
RRIC392021 ncbi Rickettsia rickettsii Sheila Smith1
RPRO272947 ncbi Rickettsia prowazekii Madrid E1
PTOR263820 ncbi Picrophilus torridus DSM 97901
PISL384616 ncbi Pyrobaculum islandicum DSM 41840
PHOR70601 ncbi Pyrococcus horikoshii OT30
PFUR186497 ncbi Pyrococcus furiosus DSM 36380
PAST100379 Onion yellows phytoplasma0
PARS340102 ncbi Pyrobaculum arsenaticum DSM 135140
PAER178306 ncbi Pyrobaculum aerophilum IM20
PACN267747 ncbi Propionibacterium acnes KPA1712021
PABY272844 ncbi Pyrococcus abyssi GE50
OTSU357244 ncbi Orientia tsutsugamushi Boryong1
NSP35761 Nocardioides sp.1
NSEN222891 ncbi Neorickettsia sennetsu Miyayama1
NPHA348780 ncbi Natronomonas pharaonis DSM 21601
MTHE187420 ncbi Methanothermobacter thermautotrophicus Delta H1
MSYN262723 ncbi Mycoplasma synoviae 530
MSTA339860 ncbi Methanosphaera stadtmanae DSM 30911
MSED399549 ncbi Metallosphaera sedula DSM 53480
MPUL272635 ncbi Mycoplasma pulmonis UAB CTIP0
MPNE272634 ncbi Mycoplasma pneumoniae M1290
MPEN272633 ncbi Mycoplasma penetrans HF-21
MMYC272632 ncbi Mycoplasma mycoides mycoides SC str. PG11
MMOB267748 ncbi Mycoplasma mobile 163K0
MMAZ192952 ncbi Methanosarcina mazei Go10
MMAR444158 ncbi Methanococcus maripaludis C61
MMAR402880 ncbi Methanococcus maripaludis C51
MMAR368407 ncbi Methanoculleus marisnigri JR11
MLAB410358 ncbi Methanocorpusculum labreanum Z0
MKAN190192 ncbi Methanopyrus kandleri AV190
MJAN243232 ncbi Methanocaldococcus jannaschii DSM 26610
MHYO295358 ncbi Mycoplasma hyopneumoniae 2320
MHYO262722 ncbi Mycoplasma hyopneumoniae 74480
MHYO262719 ncbi Mycoplasma hyopneumoniae J0
MHUN323259 ncbi Methanospirillum hungatei JF-10
MGEN243273 ncbi Mycoplasma genitalium G370
MFLO265311 ncbi Mesoplasma florum L10
MCAP340047 ncbi Mycoplasma capricolum capricolum ATCC 273431
MBUR259564 ncbi Methanococcoides burtonii DSM 62421
MBAR269797 ncbi Methanosarcina barkeri Fusaro1
MART243272 ncbi Mycoplasma arthritidis 158L3-10
MAEO419665 ncbi Methanococcus aeolicus Nankai-30
MACE188937 ncbi Methanosarcina acetivorans C2A1
LXYL281090 ncbi Leifsonia xyli xyli CTCB071
KRAD266940 ncbi Kineococcus radiotolerans SRS302161
IHOS453591 ncbi Ignicoccus hospitalis KIN4/I0
HWAL362976 ncbi Haloquadratum walsbyi DSM 167901
HSP64091 ncbi Halobacterium sp. NRC-11
HSAL478009 ncbi Halobacterium salinarum R11
HPYL85963 ncbi Helicobacter pylori J991
HPYL357544 ncbi Helicobacter pylori HPAG11
HPY ncbi Helicobacter pylori 266951
HMUK485914 ncbi Halomicrobium mukohataei DSM 122861
HMAR272569 ncbi Haloarcula marismortui ATCC 430491
HBUT415426 ncbi Hyperthermus butylicus DSM 54560
HACI382638 ncbi Helicobacter acinonychis Sheeba1
GFOR411154 ncbi Gramella forsetii KT08031
FSUC59374 ncbi Fibrobacter succinogenes succinogenes S851
CSUL444179 ncbi Candidatus Sulcia muelleri GWSS0
CPEL335992 ncbi Candidatus Pelagibacter ubique HTCC10621
CMIC443906 ncbi Clavibacter michiganensis michiganensis NCPPB 3821
CMIC31964 ncbi Clavibacter michiganensis sepedonicus1
CMET456442 ncbi Candidatus Methanoregula boonei 6A80
CMAQ397948 ncbi Caldivirga maquilingensis IC-1670
CKOR374847 ncbi Candidatus Korarchaeum cryptofilum OPF80
BXEN266265 ncbi Burkholderia xenovorans LB4001
BTUR314724 ncbi Borrelia turicatae 91E1350
BHER314723 ncbi Borrelia hermsii DAH0
BGAR290434 ncbi Borrelia garinii PBi0
BBUR224326 ncbi Borrelia burgdorferi B310
BAFZ390236 ncbi Borrelia afzelii PKo0
AYEL322098 ncbi Aster yellows witches-broom phytoplasma AYWB0
AURANTIMONAS Aurantimonas manganoxydans SI85-9A10
ASP1667 Arthrobacter sp.1
APER272557 ncbi Aeropyrum pernix K10
AFUL224325 ncbi Archaeoglobus fulgidus DSM 43041
AAUR290340 ncbi Arthrobacter aurescens TC11


Names of the homologs of the genes in the group in each of these orgs
  G7321   G7320   G7319   EG12401   EG11072   EG10453   EG10370   EG10015   
UURE95667
UURE95664
UPAR505682
UMET351160 LRC556
TWHI218496 TW0559
TWHI203267 TW186
TVOL273116
TPEN368408
TPAL243276 TP_0446
TKOD69014
TACI273075
STOK273063 ST2402
SSOL273057
SMAR399550
SARE391037 SARE_1304
SACI330779
RTYP257363
RSAL288705 RSAL33209_0641
RRIC392021 A1G_05685
RPRO272947 RP232
PTOR263820 PTO1018
PISL384616
PHOR70601
PFUR186497
PAST100379
PARS340102
PAER178306
PACN267747 PPA1506
PABY272844
OTSU357244 OTBS_1915
NSP35761 NOCA_3202
NSEN222891 NSE_0799
NPHA348780 NP4750A
MTHE187420 MTH1485
MSYN262723
MSTA339860 MSP_0197
MSED399549
MPUL272635
MPNE272634
MPEN272633 MYPE9400
MMYC272632 MSC_0101
MMOB267748
MMAZ192952
MMAR444158 MMARC6_0154
MMAR402880 MMARC5_0850
MMAR368407 MEMAR_1979
MLAB410358
MKAN190192
MJAN243232
MHYO295358
MHYO262722
MHYO262719
MHUN323259
MGEN243273
MFLO265311
MCAP340047 MCAP_0057
MBUR259564 MBUR_1515
MBAR269797 MBAR_A2782
MART243272
MAEO419665
MACE188937 MA0850
LXYL281090 LXX12200
KRAD266940 KRAD_1429
IHOS453591
HWAL362976 HQ3060A
HSP64091 VNG6297C
HSAL478009 OE6278R
HPYL85963 JHP0569
HPYL357544 HPAG1_0608
HPY HP0625
HMUK485914 HMUK_0677
HMAR272569 RRNAC3198
HBUT415426
HACI382638 HAC_0735
GFOR411154 GFO_0353
FSUC59374 FSU2949
CSUL444179
CPEL335992 SAR11_0517
CMIC443906 CMM_2156
CMIC31964 CMS1849
CMET456442
CMAQ397948
CKOR374847
BXEN266265 BXE_B2415
BTUR314724
BHER314723
BGAR290434
BBUR224326
BAFZ390236
AYEL322098
AURANTIMONAS
ASP1667 ARTH_1404
APER272557
AFUL224325 AF_1399
AAUR290340 AAUR_1546


Organism features enriched in list (features available for 89 out of the 95 orgs in the list)
Feature    Pvalue       Num occurrences in list  Total num occurrences  
Arrangment:Aggregates 0.005049359
Arrangment:Chains 0.0000723392
Arrangment:Singles 0.000029361286
Endospores:No 7.467e-1464211
Endospores:Yes 0.0010407153
GC_Content_Range4:0-40 0.004372143213
GC_Content_Range4:60-100 0.009576914145
GC_Content_Range7:0-30 8.576e-92347
GC_Content_Range7:60-70 0.003144211134
Genome_Size_Range5:0-2 9.090e-1454155
Genome_Size_Range5:4-6 9.217e-97184
Genome_Size_Range5:6-10 0.0027219147
Genome_Size_Range9:0-1 4.011e-111927
Genome_Size_Range9:1-2 0.000025435128
Genome_Size_Range9:4-5 0.0001889496
Genome_Size_Range9:5-6 0.0001359388
Gram_Stain:Gram_Neg 2.474e-631333
Gram_Stain:Gram_Pos 0.00005629150
Habitat:Multiple 7.273e-79178
Habitat:Specialized 0.00005961953
Motility:No 0.007164932151
Optimal_temp.:- 0.000152524257
Optimal_temp.:100 0.003456433
Optimal_temp.:85 0.000512544
Oxygen_Req:Anaerobic 8.433e-631102
Oxygen_Req:Facultative 0.003090620201
Pathogenic_in:Animal 0.0007897266
Pathogenic_in:Human 0.003779022213
Salinity:Extreme_halophilic 0.001153857
Shape:Irregular_coccus 1.494e-81317
Shape:Rod 1.152e-1124347
Shape:Sphere 1.634e-111619
Temp._range:Hyperthermophilic 1.460e-101723
Temp._range:Mesophilic 0.000047058473



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ORGANISMS ENRICHED FOR GROUP:




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ORGANISMS DEPLETED FOR GROUP:




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PHYLOGENETIC PROFILE SIMILARITY WITH KNOWN PATHWAYS:

Pathways or complexes with absolute value of Pearson coefficient with respect to candidate larger than 0.4 are listed below
The candidate is assumed to exist in orgs listed in section List of organisms containing most genes from the group


Pathway or complex  # Orgs containing it  # of those orgs also containing candidate  Pearson Coeff  
PWY0-1241 (ADP-L-glycero-β-D-manno-heptose biosynthesis)2181280.6371
AST-PWY (arginine degradation II (AST pathway))120910.6244
COBALSYN-PWY (adenosylcobalamin salvage from cobinamide I)1951160.5986
GLYCOCAT-PWY (glycogen degradation I)2461280.5721
ECASYN-PWY (enterobacterial common antigen biosynthesis)1911070.5344
KDO-LIPASYN-PWY (KDO2-lipid A biosynthesis I)2251170.5319
PWY-5111 (CMP-KDO biosynthesis II (from D-arabinose 5-phosphate))3001360.5279
LIPA-CORESYN-PWY (Lipid A-core biosynthesis)1761010.5249
PWY-5755 (4-hydroxybenzoate biosynthesis II (bacteria and fungi))81640.5237
PWY-5918 (heme biosynthesis I)2721270.5108
HEME-BIOSYNTHESIS-II (heme biosynthesis from uroporphyrinogen-III I)2861290.4995
PWY-1269 (CMP-KDO biosynthesis I)3251370.4924
PHOSLIPSYN-PWY (phospholipid biosynthesis I)2901290.4921
GLUCONSUPER-PWY (D-gluconate degradation)2291130.4908
PWY4FS-7 (phosphatidylglycerol biosynthesis I (plastidic))2911290.4903
PWY0-1319 (CDP-diacylglycerol biosynthesis II)2961300.4889
PWY-5386 (methylglyoxal degradation I)3051310.4805
ENTNER-DOUDOROFF-PWY (Entner-Doudoroff pathway I)2491170.4793
GLYCOLYSIS-E-D (superpathway of glycolysis and Entner-Doudoroff)2491170.4793
GALACTITOLCAT-PWY (galactitol degradation)73560.4734
PWY-4041 (γ-glutamyl cycle)2791230.4663
3-HYDROXYPHENYLACETATE-DEGRADATION-PWY (4-hydroxyphenylacetate degradation)149850.4644
PWY-5913 (TCA cycle variation IV)3011270.4568
NAGLIPASYN-PWY (lipid IVA biosynthesis)3481370.4554
GLUTATHIONESYN-PWY (glutathione biosynthesis)3391350.4542
PWY-5861 (superpathway of demethylmenaquinone-8 biosynthesis)50430.4496
PWY-5148 (acyl-CoA hydrolysis)2271070.4474
P184-PWY (protocatechuate degradation I (meta-cleavage pathway))94620.4392
PWY-5857 (ubiquinone-10 biosynthesis (prokaryotic))183930.4380
GLUCARDEG-PWY (D-glucarate degradation I)152830.4373
PWY0-1182 (trehalose degradation II (trehalase))70510.4295
PWY-46 (putrescine biosynthesis III)138770.4259
TYRFUMCAT-PWY (tyrosine degradation I)184910.4185
PWY-5855 (ubiquinone-7 biosynthesis (prokaryotic))191930.4177
PWY0-541 (cyclopropane fatty acid (CFA) biosynthesis)3001210.4124
GLUTDEG-PWY (glutamate degradation II)194930.4103
PWY-6196 (serine racemization)102620.4061



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PAIRWISE GENOME CONTEXT SCORE MATRIX:

  G7320   G7319   EG12401   EG11072   EG10453   EG10370   EG10015   
G73210.999860.9997940.999720.9990370.9998560.9996820.999741
G73200.9998960.9996750.9989440.9997840.9995890.999689
G73190.9995960.9990040.9997010.9994820.999636
EG124010.9985560.9996720.9996490.999774
EG110720.9988940.9989060.998943
EG104530.999740.99976
EG103700.999748
EG10015



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PAIRWISE BLAST SCORES:

  G7321   G7320   G7319   EG12401   EG11072   EG10453   EG10370   EG10015   
G73210.0f0-------
G7320-0.0f0------
G7319--0.0f0-----
EG12401---0.0f0----
EG11072----0.0f0---
EG10453-----0.0f0--
EG10370------0.0f0-
EG10015-------0.0f0



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PATHWAYS OR PROTEIN COMPLEX MATCHES IN TARGET ORG:

For each case, all genes involved in the pathway or complex are listed. For each gene we list: a tag indicating whether the gene is part of the candidate list or not, the average and the minimum scores of the gene to the candidate list, the gene name, and its product names.



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GENOME CONTEXT INFORMATION:

Each row corresponds to a replicon in an organism, each column to a gene in the candidate. The second column indicates whether the organims was included in the list used to compute the genome context scores or not. Some organisms are not included because they are phylogenetically too similar to others already in the list.
The number in the matrix indicate the position of the homolog of the gene in the replicon. All numbers are relative to the smaller one, which is assigned a position of zero. Two columns with the same number indicate that the two genes matched the same gene in that organism.

Genome browser links for gene clusters

The links below opens a genome browser BioCyc page for each cluster of genes in the target genome. These pages shows the central gene of the cluster in the target genome and its best homolog in the reference genomes, for the genomes that contain homologs for at least 75% of the genes in the group. Only one genome per phylogenetic cluster of organisms is shown, to keep the list smaller.

EG10015 EG10370 EG10453 EG11072 EG12401 G7319 G7320 G7321 (centered at EG10453)


ORG:REPLICON:CIRC?\GENE  IN REF LIST  G7321   G7320   G7319   EG12401   EG11072   EG10453   EG10370   EG10015   
182/623237/623415/623408/623420/623403/623407/623163/623
AAEO224324:0:Tyes--1269214-01001-
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