CANDIDATE ID: 257

CANDIDATE ID: 257

NUMBER OF GENES: 7
AVERAGE SCORE:    9.9920852e-1 (range=[0.0,1.0])
AVERAGE MINIMUM BLAST P-VAL:    1.0000000e+0

Gene List
List of organisms containing most genes from the group
    Phylogenetic tree highlighting these organisms (opens new page)
List of organisms containing very few or no genes from the group
List of organisms enriched for group
List of organisms depleted for group
Phylogenetic profile similarity with known pathways
Pairwise genome context scores
Pairwise Blast scores
Pathway or protein complex matches in target organism
Genome context matrix
    Genes and their orthologs in genome browser BioCyc pages



GENE LIST:

- G7530 (rdgB) (b2954)
   Products of gene:
     - G7530-MONOMER (RdgB)
     - CPLX0-7826 (dITP/XTP pyrophosphatase)
       Reactions:
        ITP + H2O  ->  inosine-5'-phosphate + diphosphate + H+
        dITP + H2O  ->  dIMP + diphosphate + H+
        XTP + H2O  ->  xanthosine-5-phosphate + diphosphate + H+

- G7529 (yggU) (b2953)
   Products of gene:
     - G7529-MONOMER (conserved protein)

- G7528 (yggT) (b2952)
   Products of gene:
     - G7528-MONOMER (predicted inner membrane protein)

- G7527 (yggS) (b2951)
   Products of gene:
     - G7527-MONOMER (predicted enzyme)

- G7526 (yggR) (b2950)
   Products of gene:
     - G7526-MONOMER (predicted transporter)

- G7525 (yqgF) (b2949)
   Products of gene:
     - G7525-MONOMER (predicted Holliday junction resolvase)

- G7524 (yqgE) (b2948)
   Products of gene:
     - G7524-MONOMER (predicted protein)



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ORGANISMS CONTAINING AT LEAST 6 GENES FROM THE GROUP:

Total number of orgs: 145
Effective number of orgs (counting one per cluster within 468 clusters): 102

Organism list
Homologs in each organism in the list
Features enriched in organism list


Follow (ncbi) link, when present, to find the set of organism features for each organism
Org ID  Org Name  # genes in group found in org  
YPSE349747 ncbi Yersinia pseudotuberculosis IP 317587
YPSE273123 ncbi Yersinia pseudotuberculosis IP 329537
YPES386656 ncbi Yersinia pestis Pestoides F7
YPES377628 ncbi Yersinia pestis Nepal5167
YPES360102 ncbi Yersinia pestis Antiqua7
YPES349746 ncbi Yersinia pestis Angola7
YPES214092 ncbi Yersinia pestis CO927
YPES187410 ncbi Yersinia pestis KIM 107
YENT393305 ncbi Yersinia enterocolitica enterocolitica 80817
VVUL216895 ncbi Vibrio vulnificus CMCP67
VVUL196600 ncbi Vibrio vulnificus YJ0167
VPAR223926 ncbi Vibrio parahaemolyticus RIMD 22106337
VFIS312309 ncbi Vibrio fischeri ES1147
VEIS391735 ncbi Verminephrobacter eiseniae EF01-26
VCHO345073 ncbi Vibrio cholerae O3957
VCHO ncbi Vibrio cholerae O1 biovar El Tor str. N169617
TTUR377629 ncbi Teredinibacter turnerae T79017
TDEN292415 ncbi Thiobacillus denitrificans ATCC 252597
TCRU317025 ncbi Thiomicrospira crunogena XCL-26
SWOL335541 ncbi Syntrophomonas wolfei wolfei Goettingen6
STYP99287 ncbi Salmonella enterica enterica serovar Typhimurium str. LT27
SSP94122 ncbi Shewanella sp. ANA-37
SSON300269 ncbi Shigella sonnei Ss0467
SSED425104 ncbi Shewanella sediminis HAW-EB37
SPRO399741 ncbi Serratia proteamaculans 5687
SPEA398579 ncbi Shewanella pealeana ATCC 7003457
SONE211586 ncbi Shewanella oneidensis MR-17
SLOI323850 ncbi Shewanella loihica PV-47
SHIGELLA ncbi Shigella flexneri 2a str. 2457T7
SHAL458817 ncbi Shewanella halifaxensis HAW-EB47
SGLO343509 ncbi Sodalis glossinidius morsitans6
SFLE373384 ncbi Shigella flexneri 5 str. 84017
SFLE198214 ncbi Shigella flexneri 2a str. 3017
SENT454169 ncbi Salmonella enterica enterica serovar Heidelberg str. SL4767
SENT321314 ncbi Salmonella enterica enterica serovar Choleraesuis str. SC-B677
SENT295319 ncbi Salmonella enterica enterica serovar Paratyphi A str. ATCC 91507
SENT220341 ncbi Salmonella enterica enterica serovar Typhi str. CT187
SENT209261 ncbi Salmonella enterica enterica serovar Typhi str. Ty27
SDYS300267 ncbi Shigella dysenteriae Sd1977
SDEN318161 ncbi Shewanella denitrificans OS2176
SDEG203122 ncbi Saccharophagus degradans 2-406
SBOY300268 ncbi Shigella boydii Sb2277
SBAL402882 ncbi Shewanella baltica OS1857
SBAL399599 ncbi Shewanella baltica OS1957
SACI56780 ncbi Syntrophus aciditrophicus SB6
RSOL267608 ncbi Ralstonia solanacearum GMI10006
RRUB269796 ncbi Rhodospirillum rubrum ATCC 111706
RMET266264 ncbi Ralstonia metallidurans CH346
RFER338969 ncbi Rhodoferax ferrireducens T1187
REUT381666 ncbi Ralstonia eutropha H166
REUT264198 ncbi Ralstonia eutropha JMP1346
PTHE370438 ncbi Pelotomaculum thermopropionicum SI6
PSYR223283 ncbi Pseudomonas syringae pv. tomato str. DC30006
PSYR205918 ncbi Pseudomonas syringae pv. syringae B728a6
PSTU379731 ncbi Pseudomonas stutzeri A15016
PSP56811 Psychrobacter sp.6
PSP296591 ncbi Polaromonas sp. JS6667
PPUT76869 ncbi Pseudomonas putida GB-16
PPUT351746 ncbi Pseudomonas putida F16
PPUT160488 ncbi Pseudomonas putida KT24406
PPRO298386 ncbi Photobacterium profundum SS97
PNAP365044 ncbi Polaromonas naphthalenivorans CJ27
PMUL272843 ncbi Pasteurella multocida multocida Pm706
PMEN399739 ncbi Pseudomonas mendocina ymp7
PLUM243265 ncbi Photorhabdus luminescens laumondii TTO16
PING357804 ncbi Psychromonas ingrahamii 377
PHAL326442 ncbi Pseudoalteromonas haloplanktis TAC1256
PFLU220664 ncbi Pseudomonas fluorescens Pf-57
PFLU216595 ncbi Pseudomonas fluorescens SBW256
PFLU205922 ncbi Pseudomonas fluorescens Pf0-17
PENT384676 ncbi Pseudomonas entomophila L486
PCRY335284 ncbi Psychrobacter cryohalolentis K56
PATL342610 ncbi Pseudoalteromonas atlantica T6c7
PARC259536 ncbi Psychrobacter arcticus 273-46
PAER208964 ncbi Pseudomonas aeruginosa PAO16
PAER208963 ncbi Pseudomonas aeruginosa UCBPP-PA147
NSP103690 ncbi Nostoc sp. PCC 71206
NOCE323261 ncbi Nitrosococcus oceani ATCC 197077
NMUL323848 ncbi Nitrosospira multiformis ATCC 251966
NEUT335283 ncbi Nitrosomonas eutropha C917
NEUR228410 ncbi Nitrosomonas europaea ATCC 197187
MSUC221988 ncbi Mannheimia succiniciproducens MBEL55E6
MFLA265072 ncbi Methylobacillus flagellatus KT6
MCAP243233 ncbi Methylococcus capsulatus Bath6
MAQU351348 ncbi Marinobacter aquaeolei VT86
LPNE400673 ncbi Legionella pneumophila Corby6
LPNE297246 ncbi Legionella pneumophila Paris7
LPNE297245 ncbi Legionella pneumophila Lens7
LPNE272624 ncbi Legionella pneumophila pneumophila Philadelphia 17
LCHO395495 ncbi Leptothrix cholodnii SP-66
KPNE272620 ncbi Klebsiella pneumoniae pneumoniae MGH 785787
JSP375286 ncbi Janthinobacterium sp. Marseille6
ILOI283942 ncbi Idiomarina loihiensis L2TR6
HSOM228400 ncbi Haemophilus somnus 23366
HSOM205914 ncbi Haemophilus somnus 129PT6
HHAL349124 ncbi Halorhodospira halophila SL17
HDUC233412 ncbi Haemophilus ducreyi 35000HP6
HCHE349521 ncbi Hahella chejuensis KCTC 23967
HARS204773 ncbi Herminiimonas arsenicoxydans6
ESP42895 Enterobacter sp.7
EFER585054 ncbi Escherichia fergusonii ATCC 354697
ECOO157 ncbi Escherichia coli O157:H7 EDL9337
ECOL83334 Escherichia coli O157:H77
ECOL585397 ncbi Escherichia coli ED1a7
ECOL585057 ncbi Escherichia coli IAI397
ECOL585056 ncbi Escherichia coli UMN0267
ECOL585055 ncbi Escherichia coli 559897
ECOL585035 ncbi Escherichia coli S887
ECOL585034 ncbi Escherichia coli IAI17
ECOL481805 ncbi Escherichia coli ATCC 87397
ECOL469008 ncbi Escherichia coli BL21(DE3)7
ECOL439855 ncbi Escherichia coli SMS-3-57
ECOL413997 ncbi Escherichia coli B str. REL6067
ECOL409438 ncbi Escherichia coli SE117
ECOL405955 ncbi Escherichia coli APEC O17
ECOL364106 ncbi Escherichia coli UTI897
ECOL362663 ncbi Escherichia coli 5367
ECOL331111 ncbi Escherichia coli E24377A7
ECOL316407 ncbi Escherichia coli K-12 substr. W31107
ECOL199310 ncbi Escherichia coli CFT0737
ECAR218491 ncbi Pectobacterium atrosepticum SCRI10437
DRED349161 ncbi Desulfotomaculum reducens MI-16
DPSY177439 ncbi Desulfotalea psychrophila LSv546
DOLE96561 ncbi Desulfococcus oleovorans Hxd36
DARO159087 ncbi Dechloromonas aromatica RCB7
CVIO243365 ncbi Chromobacterium violaceum ATCC 124726
CSAL290398 ncbi Chromohalobacter salexigens DSM 30436
CPSY167879 ncbi Colwellia psychrerythraea 34H6
CJAP155077 Cellvibrio japonicus7
CBUR434922 ncbi Coxiella burnetii Dugway 5J108-1116
BBRO257310 ncbi Bordetella bronchiseptica RB506
AVAR240292 ncbi Anabaena variabilis ATCC 294136
ASP76114 ncbi Aromatoleum aromaticum EbN17
ASP62977 ncbi Acinetobacter sp. ADP16
ASP62928 ncbi Azoarcus sp. BH727
ASP232721 ncbi Acidovorax sp. JS426
ASAL382245 ncbi Aeromonas salmonicida salmonicida A4497
APLE434271 ncbi Actinobacillus pleuropneumoniae serovar 3 str. JL036
APLE416269 ncbi Actinobacillus pleuropneumoniae L206
AHYD196024 Aeromonas hydrophila dhakensis7
AFER243159 ncbi Acidithiobacillus ferrooxidans ATCC 232707
AEHR187272 ncbi Alkalilimnicola ehrlichii MLHE-16
ADEH290397 ncbi Anaeromyxobacter dehalogenans 2CP-C6
ABOR393595 ncbi Alcanivorax borkumensis SK26
AAVE397945 ncbi Acidovorax citrulli AAC00-16


Names of the homologs of the genes in the group in each of these orgs
  G7530   G7529   G7528   G7527   G7526   G7525   G7524   
YPSE349747 YPSIP31758_0826YPSIP31758_0827YPSIP31758_0828YPSIP31758_0830YPSIP31758_0831YPSIP31758_0834YPSIP31758_0835
YPSE273123 YPTB3217YPTB3216YPTB3215YPTB3213YPTB3212YPTB3209YPTB3208
YPES386656 YPDSF_0570YPDSF_0571YPDSF_0572YPDSF_0574YPDSF_0575YPDSF_0578YPDSF_0579
YPES377628 YPN_3142YPN_3141YPN_3140YPN_3138YPN_3137YPN_3134YPN_3133
YPES360102 YPA_0320YPA_0321YPA_0322YPA_0324YPA_0325YPA_0328YPA_0329
YPES349746 YPANGOLA_A0142YPANGOLA_A0141YPANGOLA_A0140YPANGOLA_A0138YPANGOLA_A3337YPANGOLA_A3340YPANGOLA_A3341
YPES214092 YPO0945YPO0944YPO0943YPO0941YPO0940YPO0937YPO0936
YPES187410 Y3331Y3330Y3329Y3327Y3326Y3323Y3322
YENT393305 YE3437YE3436YE3435YE3433YE3432YE3429YE3428
VVUL216895 VV1_1520VV1_1522VV1_1523VV1_1525VV1_1526VV1_1528VV1_1529
VVUL196600 VV2879VV2877VV2876VV2873VV2874VV2870VV2869
VPAR223926 VP2621VP2619VP2618VP2616VP2615VP2613VP2612
VFIS312309 VF0425VF0427VF0428VF0430VF0431VF0433VF0434
VEIS391735 VEIS_4156VEIS_4865VEIS_1687VEIS_1688VEIS_1516VEIS_1517
VCHO345073 VC0395_A0008VC0395_A0010VC0395_A0011VC0395_A0013VC0395_A0014VC0395_A0018VC0395_A0019
VCHO VC0456VC0458VC0459VC0461VC0462VC0466VC0467
TTUR377629 TERTU_0216TERTU_0220TERTU_0221TERTU_0223TERTU_0225TERTU_0227TERTU_0228
TDEN292415 TBD_0478TBD_2620TBD_2416TBD_0668TBD_2419TBD_2580TBD_2579
TCRU317025 TCR_2054TCR_1838TCR_1834TCR_1750TCR_1828TCR_1827
SWOL335541 SWOL_0454SWOL_0959SWOL_0956SWOL_0953SWOL_0532SWOL_0470
STYP99287 STM3103STM3102STM3101STM3100STM3099STM3097STM3096
SSP94122 SHEWANA3_1189SHEWANA3_1191SHEWANA3_1192SHEWANA3_1194SHEWANA3_1195SHEWANA3_1199SHEWANA3_1200
SSON300269 SSO_3108SSO_3107SSO_3106SSO_3104SSO_3105SSO_3103SSO_3102
SSED425104 SSED_1227SSED_1229SSED_1230SSED_1232SSED_1233SSED_1236SSED_1237
SPRO399741 SPRO_4034SPRO_4033SPRO_4032SPRO_4030SPRO_4029SPRO_4028SPRO_4027
SPEA398579 SPEA_1122SPEA_1124SPEA_1125SPEA_1127SPEA_1128SPEA_1131SPEA_1132
SONE211586 SO_3358SO_3356SO_3355SO_3352SO_3351SO_3347SO_3346
SLOI323850 SHEW_1132SHEW_1134SHEW_1135SHEW_1137SHEW_1138SHEW_1143SHEW_1144
SHIGELLA YGGVYGGUYGGTYGGSYGGRYQGFYQGE
SHAL458817 SHAL_1167SHAL_1169SHAL_1170SHAL_1172SHAL_1173SHAL_1176SHAL_1177
SGLO343509 SG2031SG2030SG2029SG2027SG2024SG2023
SFLE373384 SFV_3008SFV_3007SFV_3006SFV_3005SFV_3004SFV_3003SFV_3002
SFLE198214 AAN44426.1AAN44425.1AAN44424.1AAN44423.1AAN44422.1AAN44421.1AAN44420.1
SENT454169 SEHA_C3342SEHA_C3341SEHA_C3340SEHA_C3339SEHA_C3338SEHA_C3336SEHA_C3335
SENT321314 SCH_3043SCH_3042SCH_3041SCH_3040SCH_3039SCH_3037SCH_3036
SENT295319 SPA2966SPA2965SPA2964SPA2963SPA2962SPA2960SPA2959
SENT220341 STY3256STY3255STY3254STY3253STY3252STY3250STY3249
SENT209261 T3015T3014T3013T3012T3011T3009T3008
SDYS300267 SDY_3118SDY_3119SDY_3120SDY_3122SDY_3121SDY_3123SDY_3124
SDEN318161 SDEN_2686SDEN_2684SDEN_2682SDEN_2681SDEN_2673SDEN_2674
SDEG203122 SDE_3647SDE_3643SDE_3641SDE_3640SDE_3638SDE_3637
SBOY300268 SBO_3036SBO_3037SBO_3038SBO_3040SBO_3039SBO_3041SBO_3042
SBAL402882 SHEW185_3045SHEW185_3043SHEW185_3042SHEW185_3040SHEW185_3039SHEW185_3035SHEW185_3034
SBAL399599 SBAL195_3188SBAL195_3186SBAL195_3185SBAL195_3183SBAL195_3182SBAL195_3178SBAL195_3177
SACI56780 SYN_00901SYN_00105SYN_00106SYN_00571SYN_00125SYN_01734
RSOL267608 RSC2160RSP1385RSC2683RSC2682RSC0676RSC0675
RRUB269796 RRU_A3640RRU_A3526RRU_A1141RRU_A0118RRU_A3178RRU_A3059
RMET266264 RMET_0851RMET_3642RMET_2937RMET_2936RMET_2742RMET_2743
RFER338969 RFER_1630RFER_0749RFER_1785RFER_3879RFER_3878RFER_1378RFER_1377
REUT381666 H16_A0948H16_B0171H16_A3105H16_A3104H16_A2915H16_A2916
REUT264198 REUT_A2478REUT_B5573REUT_A2801REUT_A2800REUT_A0706REUT_A0705
PTHE370438 PTH_0792PTH_1821PTH_1825PTH_1828PTH_1146PTH_1065
PSYR223283 PSPTO_5051PSPTO_5048PSPTO_5046PSPTO_5045PSPTO_5038PSPTO_5037
PSYR205918 PSYR_0472PSYR_0475PSYR_0477PSYR_0478PSYR_0484PSYR_0485
PSTU379731 PST_3973PST_3968PST_3966PST_3965PST_3957PST_3956
PSP56811 PSYCPRWF_0308PSYCPRWF_0338PSYCPRWF_1883PSYCPRWF_1884PSYCPRWF_0143PSYCPRWF_0144
PSP296591 BPRO_1340BPRO_2664BPRO_2699BPRO_0397BPRO_0396BPRO_1143BPRO_1142
PPUT76869 PPUTGB1_5150PPUTGB1_5146PPUTGB1_5144PPUTGB1_5143PPUTGB1_5046PPUTGB1_5045
PPUT351746 PPUT_4973PPUT_4969PPUT_4967PPUT_4966PPUT_4870PPUT_4869
PPUT160488 PP_5100PP_5096PP_5094PP_5093PP_4996PP_4995
PPRO298386 PBPRA3148PBPRA3146PBPRA3145PBPRA3143PBPRA3142PBPRA3140PBPRA3139
PNAP365044 PNAP_0815PNAP_0379PNAP_2437PNAP_0280PNAP_0278PNAP_3347PNAP_3348
PMUL272843 PM1666PM1313PM1314PM0112PM1870PM1869
PMEN399739 PMEN_4158PMEN_4153PMEN_4152PMEN_4150PMEN_4149PMEN_0399PMEN_0400
PLUM243265 PLU1177PLU1178PLU1180PLU1181PLU1182PLU1183
PING357804 PING_3045PING_3043PING_3042PING_3040PING_3039PING_1285PING_1286
PHAL326442 PSHAA2608PSHAA2606PSHAA2604PSHAA2603PSHAA2601PSHAA2600
PFLU220664 PFL_5845PFL_5841PFL_5840PFL_5838PFL_5837PFL_5831PFL_5830
PFLU216595 PFLU5769PFLU5765PFLU5763PFLU5762PFLU5756PFLU5755
PFLU205922 PFL_5326PFL_5322PFL_5321PFL_5319PFL_5318PFL_5312PFL_5311
PENT384676 PSEEN0312PSEEN0316PSEEN0318PSEEN0319PSEEN5059PSEEN5058
PCRY335284 PCRYO_2232PCRYO_0178PCRYO_0294PCRYO_0293PCRYO_0061PCRYO_0062
PATL342610 PATL_3287PATL_0407PATL_3720PATL_3718PATL_3717PATL_1154PATL_1153
PARC259536 PSYC_1939PSYC_0166PSYC_0268PSYC_0267PSYC_0056PSYC_0057
PAER208964 PA0387PA0392PA0394PA0395PA0404PA0405
PAER208963 PA14_05050PA14_05120PA14_05130PA14_05160PA14_05180PA14_05280PA14_05290
NSP103690 ALL5088ASL3196ASL2061ALR0486ALL2443ALR3100
NOCE323261 NOC_2443NOC_3000NOC_3001NOC_3003NOC_3004NOC_0367NOC_0368
NMUL323848 NMUL_A0067NMUL_A0579NMUL_A0580NMUL_A2732NMUL_A2479NMUL_A2478
NEUT335283 NEUT_0309NEUT_2146NEUT_2147NEUT_2339NEUT_2338NEUT_0449NEUT_0448
NEUR228410 NE0277NE0395NE0394NE0966NE0965NE1667NE1668
MSUC221988 MS1747MS0322MS0321MS1705MS0261MS0260
MFLA265072 MFLA_0042MFLA_2110MFLA_2108MFLA_2107MFLA_2100MFLA_2099
MCAP243233 MCA_3023MCA_1534MCA_1536MCA_1537MCA_2335MCA_2336
MAQU351348 MAQU_0529MAQU_0534MAQU_0536MAQU_0537MAQU_3763MAQU_3764
LPNE400673 LPC_1994LPC_1500LPC_1498LPC_1497LPC_2716LPC_2717
LPNE297246 LPP2548PLPP0102LPP1998LPP1996LPP1995LPP0637LPP0636
LPNE297245 LPL2404LPL2644LPL1993LPL1991LPL1990LPL0621LPL0620
LPNE272624 LPG2484LPG2716LPG2016LPG2014LPG2013LPG0587LPG0586
LCHO395495 LCHO_0704LCHO_0384LCHO_1630LCHO_1631LCHO_3961LCHO_3962
KPNE272620 GKPORF_B2733GKPORF_B2732GKPORF_B2731GKPORF_B2730GKPORF_B2729GKPORF_B2727GKPORF_B2726
JSP375286 MMA_1333MMA_2976MMA_0341MMA_0340MMA_2949MMA_2950
ILOI283942 IL1979IL1976IL1974IL1973IL2219IL2218
HSOM228400 HSM_2010HSM_1819HSM_1820HSM_0348HSM_1901HSM_1900
HSOM205914 HS_0125HS_1657HS_1658HS_1215HS_0010HS_0009
HHAL349124 HHAL_0972HHAL_0948HHAL_0947HHAL_0945HHAL_0316HHAL_0939HHAL_0938
HDUC233412 HD_1348HD_0778HD_0777HD_0298HD_1795HD_1794
HCHE349521 HCH_06362HCH_06357HCH_06356HCH_06353HCH_06352HCH_00551HCH_00550
HARS204773 HEAR2125HEAR2767HEAR0290HEAR0289HEAR2739HEAR2740
ESP42895 ENT638_3360ENT638_3359ENT638_3358ENT638_3357ENT638_3356ENT638_3353ENT638_3352
EFER585054 EFER_2893EFER_2892EFER_2891EFER_2890EFER_2889EFER_2888EFER_2887
ECOO157 YGGVYGGUYGGTYGGSYGGRYQGFYQGE
ECOL83334 ECS3830ECS3829ECS3828ECS3826ECS3827ECS3825ECS3824
ECOL585397 ECED1_3417ECED1_3416ECED1_3415ECED1_3414ECED1_3413ECED1_3412ECED1_3411
ECOL585057 ECIAI39_3372ECIAI39_3371ECIAI39_3370ECIAI39_3369ECIAI39_3368ECIAI39_3367ECIAI39_3366
ECOL585056 ECUMN_3306ECUMN_3305ECUMN_3304ECUMN_3303ECUMN_3302ECUMN_3301ECUMN_3300
ECOL585055 EC55989_3247EC55989_3246EC55989_3245EC55989_3244EC55989_3243EC55989_3242EC55989_3241
ECOL585035 ECS88_3236ECS88_3235ECS88_3234ECS88_3233ECS88_3232ECS88_3231ECS88_3230
ECOL585034 ECIAI1_3087ECIAI1_3086ECIAI1_3085ECIAI1_3084ECIAI1_3083ECIAI1_3082ECIAI1_3081
ECOL481805 ECOLC_0760ECOLC_0761ECOLC_0762ECOLC_0763ECOLC_0764ECOLC_0765ECOLC_0766
ECOL469008 ECBD_0786ECBD_0787ECBD_0788ECBD_0789ECBD_0790ECBD_0791ECBD_0792
ECOL439855 ECSMS35_3096ECSMS35_3095ECSMS35_3094ECSMS35_3093ECSMS35_3092ECSMS35_3091ECSMS35_3090
ECOL413997 ECB_02784ECB_02783ECB_02782ECB_02781ECB_02780ECB_02779ECB_02778
ECOL409438 ECSE_3222ECSE_3221ECSE_3220ECSE_3219ECSE_3218ECSE_3217ECSE_3216
ECOL405955 APECO1_3567APECO1_3568APECO1_3569APECO1_3570APECO1_3571APECO1_3572APECO1_3573
ECOL364106 UTI89_C3343UTI89_C3342UTI89_C3341UTI89_C3340UTI89_C3339UTI89_C3338UTI89_C3337
ECOL362663 ECP_2948ECP_2947ECP_2946ECP_2945ECP_2944ECP_2943ECP_2942
ECOL331111 ECE24377A_3298ECE24377A_3297ECE24377A_3296ECE24377A_3295ECE24377A_3294ECE24377A_3292ECE24377A_3291
ECOL316407 ECK2949:JW2921:B2954ECK2948:JW5479:B2953ECK2947:JW2919:B2952ECK2946:JW2918:B2951ECK2945:JW2917:B2950ECK2944:JW2916:B2949ECK2943:JW2915:B2948
ECOL199310 C3540C3539C3538C3537C3536C3535C3534
ECAR218491 ECA3631ECA3630ECA3629ECA3627ECA3626ECA3926ECA3925
DRED349161 DRED_2683DRED_0717DRED_0714DRED_0712DRED_1035DRED_0775
DPSY177439 DP0707DP0789DP0787DP2780DP1694DP2218
DOLE96561 DOLE_0374DOLE_0289DOLE_3054DOLE_1179DOLE_3053DOLE_1574
DARO159087 DARO_3852DARO_3887DARO_3886DARO_3884DARO_3883DARO_3892DARO_3893
CVIO243365 CV_0926CV_0176CV_0178CV_0179CV_3910CV_3909
CSAL290398 CSAL_3307CSAL_3056CSAL_3054CSAL_3053CSAL_0059CSAL_0058
CPSY167879 CPS_3667CPS_3665CPS_3663CPS_3662CPS_1251CPS_1252
CJAP155077 CJA_0122CJA_0091CJA_0090CJA_0088CJA_0087CJA_0084CJA_0083
CBUR434922 COXBU7E912_2059COXBU7E912_1117COXBU7E912_2188COXBU7E912_2190COXBU7E912_2194COXBU7E912_2193
BBRO257310 BB2956BB4379BB2871BB0791BB4404BB4405
AVAR240292 AVA_2368AVA_3894AVA_3109AVA_2899AVA_0375AVA_3804
ASP76114 C1A234EBA1762EBA1764EBA1768EBA1770EBA1756EBA1753
ASP62977 ACIAD0526ACIAD3031ACIAD0913ACIAD0912ACIAD0352ACIAD0353
ASP62928 AZO3964AZO3464AZO3465AZO3467AZO3468AZO3460AZO3459
ASP232721 AJS_0922AJS_3242AJS_0421AJS_0420AJS_3572AJS_3573
ASAL382245 ASA_3446ASA_3628ASA_3629ASA_3631ASA_3632ASA_1194ASA_1195
APLE434271 APJL_0491APJL_1398APJL_1399APJL_0052APJL_0236APJL_0237
APLE416269 APL_0464APL_1380APL_1381APL_0052APL_0231APL_0232
AHYD196024 AHA_0846AHA_3661AHA_3662AHA_3664AHA_3665AHA_3131AHA_3130
AFER243159 AFE_0759AFE_2768AFE_2767AFE_2765AFE_2764AFE_0049AFE_0048
AEHR187272 MLG_2447MLG_0339MLG_0341MLG_0342MLG_0348MLG_0349
ADEH290397 ADEH_3360ADEH_1087ADEH_2503ADEH_0623ADEH_1232ADEH_3962
ABOR393595 ABO_2578ABO_2667ABO_2669ABO_2670ABO_0113ABO_0112
AAVE397945 AAVE_3578AAVE_1212AAVE_0638AAVE_0637AAVE_0908AAVE_0907


Organism features enriched in list (features available for 140 out of the 145 orgs in the list)
Feature    Pvalue       Num occurrences in list  Total num occurrences  
Arrangment:Chains 0.0001204992
Arrangment:Pairs 0.004911837112
Disease:Bubonic_plague 0.000176566
Disease:Dysentery 0.000176566
Disease:Gastroenteritis 0.00006541013
Disease:Legionnaire's_disease 0.003217744
Endospores:No 0.000051432211
Endospores:Yes 0.0002233353
GC_Content_Range4:0-40 1.722e-209213
GC_Content_Range4:40-60 3.539e-1999224
GC_Content_Range7:30-40 3.203e-139166
GC_Content_Range7:40-50 0.000038445117
GC_Content_Range7:50-60 1.873e-1154107
Genome_Size_Range5:0-2 6.713e-211155
Genome_Size_Range5:2-4 0.005413736197
Genome_Size_Range5:4-6 3.421e-1887184
Genome_Size_Range9:1-2 1.490e-161128
Genome_Size_Range9:2-3 0.002894818120
Genome_Size_Range9:4-5 4.020e-84596
Genome_Size_Range9:5-6 7.003e-84288
Genome_Size_Range9:6-8 0.00535711638
Gram_Stain:Gram_Neg 7.719e-22126333
Gram_Stain:Gram_Pos 4.552e-201150
Habitat:Host-associated 0.008388139206
Habitat:Multiple 0.000288159178
Motility:No 1.139e-911151
Motility:Yes 3.666e-13101267
Oxygen_Req:Anaerobic 0.000047810102
Oxygen_Req:Facultative 1.064e-1182201
Shape:Coccus 8.105e-7482
Shape:Rod 9.171e-10113347
Temp._range:Psychrophilic 2.173e-699
Temp._range:Thermophilic 0.0032966235



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ORGANISMS CONTAINING AT MOST 1 GENES FROM THE GROUP:

Total number of orgs: 137
Effective number of orgs (counting one per cluster within 468 clusters): 111

Organism list
Homologs in each organism in the list
Features enriched in organism list


Follow (ncbi) link, when present, to find the set of organism features for each organism
Org ID  Org Name  # genes in group found in org  
WPIP955 Wolbachia pipientis0
WPIP80849 Wolbachia endosymbiont of Brugia malayi0
UURE95667 Ureaplasma urealyticum serovar 130
UURE95664 Ureaplasma urealyticum serovar 100
UPAR505682 ncbi Ureaplasma parvum serovar 3 str. ATCC 278150
UMET351160 ncbi uncultured methanogenic archaeon RC-I0
TWHI218496 ncbi Tropheryma whipplei TW08/270
TWHI203267 ncbi Tropheryma whipplei Twist0
TVOL273116 ncbi Thermoplasma volcanium GSS10
TPEN368408 ncbi Thermofilum pendens Hrk 50
TPAL243276 ncbi Treponema pallidum pallidum Nichols0
TKOD69014 ncbi Thermococcus kodakarensis KOD11
TACI273075 ncbi Thermoplasma acidophilum DSM 17280
STOK273063 ncbi Sulfolobus tokodaii 70
SSOL273057 ncbi Sulfolobus solfataricus P20
SMAR399550 ncbi Staphylothermus marinus F11
SAUR93062 ncbi Staphylococcus aureus aureus COL1
SAUR93061 ncbi Staphylococcus aureus aureus NCTC 83251
SAUR426430 ncbi Staphylococcus aureus aureus Newman1
SAUR418127 ncbi Staphylococcus aureus aureus Mu31
SAUR367830 Staphylococcus aureus aureus USA3001
SAUR359787 ncbi Staphylococcus aureus aureus JH11
SAUR359786 ncbi Staphylococcus aureus aureus JH91
SAUR282459 ncbi Staphylococcus aureus aureus MSSA4761
SAUR282458 ncbi Staphylococcus aureus aureus MRSA2521
SAUR273036 ncbi Staphylococcus aureus RF1221
SAUR196620 ncbi Staphylococcus aureus aureus MW21
SAUR158879 ncbi Staphylococcus aureus aureus N3151
SAUR158878 ncbi Staphylococcus aureus aureus Mu501
SACI330779 ncbi Sulfolobus acidocaldarius DSM 6390
RSAL288705 ncbi Renibacterium salmoninarum ATCC 332091
RFEL315456 ncbi Rickettsia felis URRWXCal21
RCON272944 ncbi Rickettsia conorii Malish 71
RAKA293614 ncbi Rickettsia akari Hartford1
PTOR263820 ncbi Picrophilus torridus DSM 97900
PRUM264731 ncbi Prevotella ruminicola 230
PMOB403833 ncbi Petrotoga mobilis SJ951
PMAR93060 ncbi Prochlorococcus marinus MIT 92150
PMAR74546 ncbi Prochlorococcus marinus MIT 93121
PMAR59920 ncbi Prochlorococcus marinus NATL2A1
PMAR167555 ncbi Prochlorococcus marinus NATL1A1
PMAR167546 ncbi Prochlorococcus marinus MIT 93011
PMAR167542 ncbi Prochlorococcus marinus MIT 95150
PMAR167540 Prochlorococcus marinus pastoris MED4ax0
PMAR167539 ncbi Prochlorococcus marinus marinus CCMP13751
PMAR146891 ncbi Prochlorococcus marinus AS96011
PISL384616 ncbi Pyrobaculum islandicum DSM 41840
PINT246198 Prevotella intermedia 171
PHOR70601 ncbi Pyrococcus horikoshii OT30
PGIN242619 ncbi Porphyromonas gingivalis W831
PFUR186497 ncbi Pyrococcus furiosus DSM 36381
PAST100379 Onion yellows phytoplasma0
PARS340102 ncbi Pyrobaculum arsenaticum DSM 135140
PAER178306 ncbi Pyrobaculum aerophilum IM20
PABY272844 ncbi Pyrococcus abyssi GE51
OTSU357244 ncbi Orientia tsutsugamushi Boryong1
NSEN222891 ncbi Neorickettsia sennetsu Miyayama0
NPHA348780 ncbi Natronomonas pharaonis DSM 21600
MTHE349307 ncbi Methanosaeta thermophila PT0
MTHE187420 ncbi Methanothermobacter thermautotrophicus Delta H0
MSYN262723 ncbi Mycoplasma synoviae 530
MSTA339860 ncbi Methanosphaera stadtmanae DSM 30910
MSED399549 ncbi Metallosphaera sedula DSM 53480
MPUL272635 ncbi Mycoplasma pulmonis UAB CTIP1
MPNE272634 ncbi Mycoplasma pneumoniae M1290
MPEN272633 ncbi Mycoplasma penetrans HF-20
MMYC272632 ncbi Mycoplasma mycoides mycoides SC str. PG10
MMOB267748 ncbi Mycoplasma mobile 163K0
MMAZ192952 ncbi Methanosarcina mazei Go11
MMAR444158 ncbi Methanococcus maripaludis C60
MMAR426368 ncbi Methanococcus maripaludis C70
MMAR402880 ncbi Methanococcus maripaludis C50
MMAR368407 ncbi Methanoculleus marisnigri JR10
MMAR267377 ncbi Methanococcus maripaludis S20
MLAB410358 ncbi Methanocorpusculum labreanum Z0
MKAN190192 ncbi Methanopyrus kandleri AV190
MJAN243232 ncbi Methanocaldococcus jannaschii DSM 26610
MHYO295358 ncbi Mycoplasma hyopneumoniae 2320
MHYO262722 ncbi Mycoplasma hyopneumoniae 74480
MHYO262719 ncbi Mycoplasma hyopneumoniae J0
MHUN323259 ncbi Methanospirillum hungatei JF-10
MGEN243273 ncbi Mycoplasma genitalium G370
MFLO265311 ncbi Mesoplasma florum L10
MCAP340047 ncbi Mycoplasma capricolum capricolum ATCC 273430
MBUR259564 ncbi Methanococcoides burtonii DSM 62420
MBAR269797 ncbi Methanosarcina barkeri Fusaro0
MART243272 ncbi Mycoplasma arthritidis 158L3-11
MAEO419665 ncbi Methanococcus aeolicus Nankai-30
MACE188937 ncbi Methanosarcina acetivorans C2A0
LBIF456481 ncbi Leptospira biflexa serovar Patoc strain Patoc 1 (Paris)1
LBIF355278 ncbi Leptospira biflexa serovar Patoc strain Patoc 1 (Ames)1
IHOS453591 ncbi Ignicoccus hospitalis KIN4/I0
HWAL362976 ncbi Haloquadratum walsbyi DSM 167900
HSP64091 ncbi Halobacterium sp. NRC-10
HSAL478009 ncbi Halobacterium salinarum R10
HPYL85963 ncbi Helicobacter pylori J990
HPYL357544 ncbi Helicobacter pylori HPAG10
HPY ncbi Helicobacter pylori 266950
HMUK485914 ncbi Halomicrobium mukohataei DSM 122860
HMAR272569 ncbi Haloarcula marismortui ATCC 430490
HBUT415426 ncbi Hyperthermus butylicus DSM 54560
HACI382638 ncbi Helicobacter acinonychis Sheeba0
ERUM302409 ncbi Ehrlichia ruminantium Gardel1
ERUM254945 ncbi Ehrlichia ruminantium Welgevonden1
ECHA205920 ncbi Ehrlichia chaffeensis Arkansas1
ECAN269484 ncbi Ehrlichia canis Jake0
CTRA471473 ncbi Chlamydia trachomatis L2b/UCH-1/proctitis1
CTRA471472 ncbi Chlamydia trachomatis 434/Bu1
CSUL444179 ncbi Candidatus Sulcia muelleri GWSS0
CMUR243161 ncbi Chlamydia muridarum Nigg1
CMET456442 ncbi Candidatus Methanoregula boonei 6A80
CMAQ397948 ncbi Caldivirga maquilingensis IC-1670
CKOR374847 ncbi Candidatus Korarchaeum cryptofilum OPF81
CJEJ407148 ncbi Campylobacter jejuni jejuni 811161
CJEJ360109 ncbi Campylobacter jejuni doylei 269.971
CJEJ354242 ncbi Campylobacter jejuni jejuni 81-1761
CJEJ195099 ncbi Campylobacter jejuni RM12211
CJEJ192222 ncbi Campylobacter jejuni jejuni NCTC 111681
CFET360106 ncbi Campylobacter fetus fetus 82-401
CFEL264202 ncbi Chlamydophila felis Fe/C-561
CCON360104 ncbi Campylobacter concisus 138261
BXEN266265 ncbi Burkholderia xenovorans LB4000
BTUR314724 ncbi Borrelia turicatae 91E1350
BLON206672 ncbi Bifidobacterium longum NCC27051
BHER314723 ncbi Borrelia hermsii DAH0
BGAR290434 ncbi Borrelia garinii PBi0
BBUR224326 ncbi Borrelia burgdorferi B310
BAPH372461 ncbi Buchnera aphidicola Cc (Cinara cedri)1
BAFZ390236 ncbi Borrelia afzelii PKo0
AYEL322098 ncbi Aster yellows witches-broom phytoplasma AYWB0
AURANTIMONAS Aurantimonas manganoxydans SI85-9A10
APHA212042 ncbi Anaplasma phagocytophilum HZ0
APER272557 ncbi Aeropyrum pernix K10
AMAR234826 ncbi Anaplasma marginale St. Maries1
ALAI441768 ncbi Acholeplasma laidlawii PG-8A0
AFUL224325 ncbi Archaeoglobus fulgidus DSM 43040
AAUR290340 ncbi Arthrobacter aurescens TC11


Names of the homologs of the genes in the group in each of these orgs
  G7530   G7529   G7528   G7527   G7526   G7525   G7524   
WPIP955
WPIP80849
UURE95667
UURE95664
UPAR505682
UMET351160
TWHI218496
TWHI203267
TVOL273116
TPEN368408
TPAL243276
TKOD69014 TK0768
TACI273075
STOK273063
SSOL273057
SMAR399550 SMAR_0527
SAUR93062 SACOL1162
SAUR93061 SAOUHSC_01107
SAUR426430 NWMN_1064
SAUR418127 SAHV_1142
SAUR367830 SAUSA300_1050
SAUR359787 SAURJH1_1232
SAUR359786 SAURJH9_1210
SAUR282459 SAS1085
SAUR282458 SAR1124
SAUR273036 SAB1015
SAUR196620 MW1034
SAUR158879 SA0998
SAUR158878 SAV1152
SACI330779
RSAL288705 RSAL33209_1474
RFEL315456 RF_0044
RCON272944 RC0043
RAKA293614 A1C_00165
PTOR263820
PRUM264731
PMOB403833 PMOB_1356
PMAR93060
PMAR74546 PMT9312_1188
PMAR59920 PMN2A_1645
PMAR167555 NATL1_03591
PMAR167546 P9301ORF_0706
PMAR167542
PMAR167540
PMAR167539 PRO_0925
PMAR146891 A9601_08551
PISL384616
PINT246198 PIN_A1352
PHOR70601
PGIN242619 PG_2126
PFUR186497 PF1765
PAST100379
PARS340102
PAER178306
PABY272844 PAB7122
OTSU357244 OTBS_0498
NSEN222891
NPHA348780
MTHE349307
MTHE187420
MSYN262723
MSTA339860
MSED399549
MPUL272635 MYPU_5560
MPNE272634
MPEN272633
MMYC272632
MMOB267748
MMAZ192952 MM1675
MMAR444158
MMAR426368
MMAR402880
MMAR368407
MMAR267377
MLAB410358
MKAN190192
MJAN243232
MHYO295358
MHYO262722
MHYO262719
MHUN323259
MGEN243273
MFLO265311
MCAP340047
MBUR259564
MBAR269797
MART243272 MART0168
MAEO419665
MACE188937
LBIF456481 LEPBI_I3376
LBIF355278 LBF_3262
IHOS453591
HWAL362976
HSP64091
HSAL478009
HPYL85963
HPYL357544
HPY
HMUK485914
HMAR272569
HBUT415426
HACI382638
ERUM302409 ERGA_CDS_05820
ERUM254945 ERWE_CDS_05910
ECHA205920 ECH_0460
ECAN269484
CTRA471473 CTLON_0458
CTRA471472 CTL0463
CSUL444179
CMUR243161 TC_0483
CMET456442
CMAQ397948
CKOR374847 KCR_0466
CJEJ407148 C8J_0791
CJEJ360109 JJD26997_0993
CJEJ354242 CJJ81176_0860
CJEJ195099 CJE_0931
CJEJ192222 CJ0844C
CFET360106 CFF8240_1145
CFEL264202 CF0373
CCON360104 CCC13826_0222
BXEN266265
BTUR314724
BLON206672 BL0285
BHER314723
BGAR290434
BBUR224326
BAPH372461 BCC_360
BAFZ390236
AYEL322098
AURANTIMONAS
APHA212042
APER272557
AMAR234826 AM859
ALAI441768
AFUL224325
AAUR290340 AAUR_2569


Organism features enriched in list (features available for 128 out of the 137 orgs in the list)
Feature    Pvalue       Num occurrences in list  Total num occurrences  
Arrangment:Chains 0.00160811092
Arrangment:Clusters 0.00001631217
Arrangment:Singles 0.006490074286
Disease:Toxic-shock_syndrome_and_staphylococcal_scarlet_fever 0.0000327911
Endospores:No 2.050e-1585211
GC_Content_Range4:0-40 8.018e-1280213
GC_Content_Range4:40-60 0.005714538224
GC_Content_Range4:60-100 3.288e-810145
GC_Content_Range7:0-30 3.241e-62447
GC_Content_Range7:30-40 0.000011756166
GC_Content_Range7:50-60 0.000892412107
GC_Content_Range7:60-70 4.351e-710134
Genome_Size_Range5:0-2 5.031e-2582155
Genome_Size_Range5:4-6 1.067e-175184
Genome_Size_Range5:6-10 0.0000735147
Genome_Size_Range9:0-1 2.027e-112227
Genome_Size_Range9:1-2 2.909e-1360128
Genome_Size_Range9:3-4 0.0028251877
Genome_Size_Range9:4-5 2.314e-8396
Genome_Size_Range9:5-6 1.905e-8288
Gram_Stain:Gram_Neg 0.000022753333
Gram_Stain:Gram_Pos 0.000070317150
Habitat:Aquatic 0.00566462991
Habitat:Host-associated 0.000408161206
Habitat:Multiple 1.892e-1012178
Habitat:Specialized 0.00112172153
Motility:No 0.004573744151
Optimal_temp.:30-37 0.00025651118
Optimal_temp.:85 0.002239244
Oxygen_Req:Aerobic 0.000237925185
Oxygen_Req:Anaerobic 0.000267036102
Oxygen_Req:Facultative 0.003046032201
Oxygen_Req:Microaerophilic 0.00133931018
Salinity:Extreme_halophilic 0.006237757
Shape:Coccus 0.00893242682
Shape:Irregular_coccus 5.918e-91517
Shape:Pleomorphic 0.001776068
Shape:Rod 9.447e-2526347
Shape:Sphere 6.749e-91619
Shape:Spiral 7.203e-61934
Temp._range:Hyperthermophilic 7.216e-81723
Temp._range:Mesophilic 0.000019987473



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ORGANISMS ENRICHED FOR GROUP:




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ORGANISMS DEPLETED FOR GROUP:




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PHYLOGENETIC PROFILE SIMILARITY WITH KNOWN PATHWAYS:

Pathways or complexes with absolute value of Pearson coefficient with respect to candidate larger than 0.4 are listed below
The candidate is assumed to exist in orgs listed in section List of organisms containing most genes from the group


Pathway or complex  # Orgs containing it  # of those orgs also containing candidate  Pearson Coeff  
PWY0-1241 (ADP-L-glycero-β-D-manno-heptose biosynthesis)2181260.5994
COBALSYN-PWY (adenosylcobalamin salvage from cobinamide I)1951130.5538
AST-PWY (arginine degradation II (AST pathway))120850.5497
GLYCOCAT-PWY (glycogen degradation I)2461250.5264
ECASYN-PWY (enterobacterial common antigen biosynthesis)1911080.5235
PWY-5111 (CMP-KDO biosynthesis II (from D-arabinose 5-phosphate))3001360.5031
PWY-5755 (4-hydroxybenzoate biosynthesis II (bacteria and fungi))81610.4760
PHOSLIPSYN-PWY (phospholipid biosynthesis I)2901300.4760
PWY4FS-7 (phosphatidylglycerol biosynthesis I (plastidic))2911300.4741
LIPA-CORESYN-PWY (Lipid A-core biosynthesis)176970.4728
PWY-5918 (heme biosynthesis I)2721250.4725
PWY0-1319 (CDP-diacylglycerol biosynthesis II)2961310.4724
PWY-5913 (TCA cycle variation IV)3011320.4708
PWY-1269 (CMP-KDO biosynthesis I)3251370.4666
PWY-5386 (methylglyoxal degradation I)3051310.4560
KDO-LIPASYN-PWY (KDO2-lipid A biosynthesis I)2251100.4557
HEME-BIOSYNTHESIS-II (heme biosynthesis from uroporphyrinogen-III I)2861250.4454
NAGLIPASYN-PWY (lipid IVA biosynthesis)3481390.4437
PWY-4041 (γ-glutamyl cycle)2791230.4435
GLUTATHIONESYN-PWY (glutathione biosynthesis)3391370.4431
PWY-5861 (superpathway of demethylmenaquinone-8 biosynthesis)50430.4385
P184-PWY (protocatechuate degradation I (meta-cleavage pathway))94620.4258
GALACTITOLCAT-PWY (galactitol degradation)73530.4253
GLUCONSUPER-PWY (D-gluconate degradation)2291060.4152
PWY-5857 (ubiquinone-10 biosynthesis (prokaryotic))183920.4120
ENTNER-DOUDOROFF-PWY (Entner-Doudoroff pathway I)2491100.4036
GLYCOLYSIS-E-D (superpathway of glycolysis and Entner-Doudoroff)2491100.4036
PWY-6196 (serine racemization)102630.4030



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PAIRWISE GENOME CONTEXT SCORE MATRIX:

  G7529   G7528   G7527   G7526   G7525   G7524   
G75300.999120.9992310.9990030.9989660.9988840.998875
G75290.9996360.9993520.9991770.9988520.998673
G75280.9996720.9994990.9991320.999166
G75270.9997330.9989750.999022
G75260.9993930.999167
G75250.999851
G7524



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PAIRWISE BLAST SCORES:

  G7530   G7529   G7528   G7527   G7526   G7525   G7524   
G75300.0f0------
G7529-0.0f0-----
G7528--0.0f0----
G7527---0.0f0---
G7526----0.0f0--
G7525-----0.0f0-
G7524------0.0f0



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PATHWAYS OR PROTEIN COMPLEX MATCHES IN TARGET ORG:

For each case, all genes involved in the pathway or complex are listed. For each gene we list: a tag indicating whether the gene is part of the candidate list or not, the average and the minimum scores of the gene to the candidate list, the gene name, and its product names.



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GENOME CONTEXT INFORMATION:

Each row corresponds to a replicon in an organism, each column to a gene in the candidate. The second column indicates whether the organims was included in the list used to compute the genome context scores or not. Some organisms are not included because they are phylogenetically too similar to others already in the list.
The number in the matrix indicate the position of the homolog of the gene in the replicon. All numbers are relative to the smaller one, which is assigned a position of zero. Two columns with the same number indicate that the two genes matched the same gene in that organism.

Genome browser links for gene clusters

The links below opens a genome browser BioCyc page for each cluster of genes in the target genome. These pages shows the central gene of the cluster in the target genome and its best homolog in the reference genomes, for the genomes that contain homologs for at least 75% of the genes in the group. Only one genome per phylogenetic cluster of organisms is shown, to keep the list smaller.

G7524 G7525 G7526 G7527 G7528 G7529 G7530 (centered at G7527)


ORG:REPLICON:CIRC?\GENE  IN REF LIST  G7530   G7529   G7528   G7527   G7526   G7525   G7524   
406/623154/623246/623396/623241/623406/623316/623
AAEO224324:0:Tyes0--52380--
AAUR290340:2:Tyes0------
AAVE397945:0:Tyes2888-56210265264
ABAC204669:0:Tyes21953678-36778400-
ABAU360910:0:Tyes330-13920-14171418
ABOR393595:0:Tyes2508-25972599260010
ABUT367737:0:Tyes--3450---
ACAU438753:0:Tyes--30750-2595211
ACEL351607:0:Tyes668--0306-689
ACRY349163:8:Tyes---1188-0-
ADEH290397:0:Tyes2765466-189606143373
AEHR187272:0:Tyes2093-023910
AFER243159:0:Tyes698268126802678267710
AHYD196024:0:Tyes0272027212723272422342233
AMAR234826:0:Tyes-----0-
AMAR329726:9:Tyes4588-143152723750-
AMET293826:0:Tyes0--180624691468-
ANAE240017:0:Tyes0--168-427-
AORE350688:0:Tyes0-84684410731096-
APLE416269:0:Tyes420135113520-184185
APLE434271:0:Tno427134313440-187188
ASAL382245:5:Tyes2156233623372339234001
ASP1667:3:Tyes1010--0---
ASP232721:2:Tyes493-27321030543055
ASP62928:0:Tyes506568910
ASP62977:0:Tyes155-249452852701
ASP76114:2:Tyes343568910
AVAR240292:3:Tyes200335332743253403442-
BABO262698:0:Tno-----0-
BABO262698:1:Tno--14131241--0
BAMB339670:3:Tno239-1880-118117
BAMB398577:3:Tno219-1690-108107
BAMY326423:0:Tyes1021--0-927-
BANT260799:0:Tno626-02-531-
BANT261594:2:Tno648-02-555-
BANT568206:2:Tyes4070-20-3975-
BANT592021:2:Tno657-02-563-
BAPH198804:0:Tyes---1-0-
BAPH372461:0:Tyes-----0-
BBAC264462:0:Tyes-0-33134--
BBAC360095:0:Tyes-209-0-686-
BBRO257310:0:Tyes2180-36292095036543655
BCAN483179:0:Tno-----0-
BCAN483179:1:Tno--15031311--0
BCEN331271:2:Tno272-2220-135134
BCEN331272:3:Tyes265-2170-134133
BCER226900:1:Tyes588-02-476-
BCER288681:0:Tno576-02-471-
BCER315749:1:Tyes640--0-540-
BCER405917:1:Tyes613-02-505-
BCER572264:1:Tno583-02-488-
BCIC186490:0:Tyes-----01
BCLA66692:0:Tyes1075--758-0-
BFRA272559:1:Tyes---727--0
BFRA295405:0:Tno---915--0
BHAL272558:0:Tyes1816-12831285-0-
BHEN283166:0:Tyes-0-1261-619264
BJAP224911:0:Fyes--075-4576956
BLIC279010:0:Tyes1194-0--1078-
BLON206672:0:Tyes0------
BMAL243160:1:Tno86-138373-01
BMAL320388:1:Tno478-4190-578577
BMAL320389:1:Tyes104-163726-01
BMEL224914:0:Tno-----0-
BMEL224914:1:Tno---0--1243
BMEL359391:0:Tno-----0-
BMEL359391:1:Tno--13641201--0
BOVI236:0:Tyes-----0-
BOVI236:1:Tyes---1122--0
BPAR257311:0:Tno81-9760-10011002
BPER257313:0:Tyes1147-2403900-10
BPET94624:0:Tyes1725-192356-10
BPSE272560:1:Tyes0-72283-129130
BPSE320372:1:Tno0-61307-121122
BPSE320373:1:Tno0-71335-151152
BPUM315750:0:Tyes1036-20-927-
BQUI283165:0:Tyes-10938-429184
BSP107806:2:Tyes---1-0-
BSP36773:2:Tyes289-2320-145144
BSP376:0:Tyes--860-4090839
BSUB:0:Tyes1350-20-1242-
BSUI204722:0:Tyes-----0-
BSUI204722:1:Tyes--14591284--0
BSUI470137:0:Tno---653-0-
BSUI470137:1:Tno--1286---0
BTHA271848:1:Tno290-2320-174173
BTHE226186:0:Tyes---262--0
BTHU281309:1:Tno573-02-477-
BTHU412694:1:Tno527--0-429-
BTRI382640:1:Tyes-0-1787-846426
BVIE269482:7:Tyes220-1730-107106
BWEI315730:4:Tyes592-02-499-
CABO218497:0:Tyes-0----344
CACE272562:1:Tyes995--433100-
CAULO:0:Tyes-236-359--0
CBEI290402:0:Tyes0--1218754744-
CBLO203907:0:Tyes-----01
CBLO291272:0:Tno-----01
CBOT36826:1:Tno1788--010721095-
CBOT441770:0:Tyes1767--0904989-
CBOT441771:0:Tno1625--0871905-
CBOT441772:1:Tno1798--010241048-
CBOT498213:1:Tno1783--09801073-
CBOT508765:1:Tyes0--1969729719-
CBOT515621:2:Tyes1916--011871210-
CBOT536232:0:Tno1906--011081132-
CBUR227377:1:Tyes0-19661968-19711970
CBUR360115:1:Tno0-19541956-19601959
CBUR434922:2:Tno900010271029-10331032
CCAV227941:1:Tyes-0----377
CCHL340177:0:Tyes---0--253
CCON360104:2:Tyes----0--
CCUR360105:0:Tyes--146-0--
CDES477974:0:Tyes547-4504530--
CDIF272563:1:Tyes2047--135722490-
CDIP257309:0:Tyes110--0--608
CEFF196164:0:Fyes670----0-
CFEL264202:1:Tyes------0
CFET360106:0:Tyes----0--
CGLU196627:0:Tyes845----01443
CHOM360107:1:Tyes--0-246--
CHUT269798:0:Tyes---873--0
CHYD246194:0:Tyes0-16781681302215-
CJAP155077:0:Tyes39875410
CJEI306537:0:Tyes0----561-
CJEJ192222:0:Tyes--0----
CJEJ195099:0:Tno--0----
CJEJ354242:2:Tyes--0----
CJEJ360109:0:Tyes--0----
CJEJ407148:0:Tno--0----
CKLU431943:1:Tyes2243--0144134-
CKOR374847:0:Tyes-0-----
CMIC31964:2:Tyes---612-0-
CMIC443906:2:Tyes0--578-521-
CMUR243161:1:Tyes------0
CNOV386415:0:Tyes878--0321333-
CPEL335992:0:Tyes---2870--
CPER195102:1:Tyes530--87011-
CPER195103:0:Tno472--84011-
CPER289380:3:Tyes463--85011-
CPHY357809:0:Tyes0--1972-1907-
CPNE115711:1:Tyes-0----369
CPNE115713:0:Tno-355----0
CPNE138677:0:Tno-364----0
CPNE182082:0:Tno-383----0
CPRO264201:0:Fyes-0-1259--1279
CPSY167879:0:Tyes2342-23402338233701
CRUT413404:0:Tyes171--174-0-
CSAL290398:0:Tyes3304-30503048304710
CSP501479:7:Fyes-0----540
CSP501479:8:Fyes---0-761-
CSP78:2:Tyes0--4899--4354
CTEP194439:0:Tyes-1725-1707-0573
CTET212717:0:Tyes1222--528580-
CTRA471472:0:Tyes------0
CTRA471473:0:Tno------0
CVES412965:0:Tyes163--167-0-
CVIO243365:0:Tyes764-02338313830
DARO159087:0:Tyes0353432314041
DDES207559:0:Tyes0169616983141---
DETH243164:0:Tyes1132--6858410-
DGEO319795:1:Tyes1936---0-162
DHAF138119:0:Tyes844--503033-
DNOD246195:0:Tyes450--0462862-
DOLE96561:0:Tyes85028009012799-1298
DPSY177439:2:Tyes0959321361023-1559
DRAD243230:3:Tyes0---1752-172
DRED349161:0:Tyes197952031962-
DSHI398580:5:Tyes---0-10423082
DSP216389:0:Tyes1011--6467740-
DSP255470:0:Tno941--5787070-
DVUL882:1:Tyes30871317-01205--
ECAR218491:0:Tyes54310301300
ECHA205920:0:Tyes-----0-
ECOL199310:0:Tno6543210
ECOL316407:0:Tno6543210
ECOL331111:6:Tno7654310
ECOL362663:0:Tno6543210
ECOL364106:1:Tno6543210
ECOL405955:2:Tyes6543210
ECOL409438:6:Tyes6543210
ECOL413997:0:Tno6543210
ECOL439855:4:Tno6543210
ECOL469008:0:Tno0123456
ECOL481805:0:Tno0123456
ECOL585034:0:Tno6543210
ECOL585035:0:Tno6543210
ECOL585055:0:Tno6543210
ECOL585056:2:Tno6543210
ECOL585057:0:Tno6543210
ECOL585397:0:Tno6543210
ECOL83334:0:Tno6543210
ECOLI:0:Tno6543210
ECOO157:0:Tno6543210
EFAE226185:3:Tyes0----80-
EFER585054:1:Tyes6543210
ELIT314225:0:Tyes678--1857-0-
ERUM254945:0:Tyes-----0-
ERUM302409:0:Tno-----0-
ESP42895:1:Tyes8765410
FALN326424:0:Tyes0--681---
FJOH376686:0:Tyes---3342--0
FMAG334413:1:Tyes---8-0-
FNOD381764:0:Tyes---0124--
FNUC190304:0:Tyes---10770--
FPHI484022:1:Tyes554-0-33411161117
FRANT:0:Tno1377-81-0839838
FSP106370:0:Tyes0--555---
FSP1855:0:Tyes3892--3330-0-
FSUC59374:0:Tyes---3340--
FTUL351581:0:Tno0-1206--579580
FTUL393011:0:Tno0-1067--530531
FTUL393115:0:Tyes1350-79-0828827
FTUL401614:0:Tyes1306-0-1459710709
FTUL418136:0:Tno163-1456-0624623
FTUL458234:0:Tno0-1103--542543
GBET391165:0:Tyes--02065--1601
GFOR411154:0:Tyes---0--778
GKAU235909:1:Tyes1554-2015171443-
GMET269799:1:Tyes98726326502507--
GOXY290633:5:Tyes0--309--175
GSUL243231:0:Tyes135042642820990--
GTHE420246:1:Tyes1564-2015291458-
GURA351605:0:Tyes10852025003082--
GVIO251221:0:Tyes03347-1732162--
HARS204773:0:Tyes1721-23341023072308
HAUR316274:2:Tyes0--609-2699-
HCHE349521:0:Tyes5617561256115609560810
HDUC233412:0:Tyes9174224210-13071306
HHAL349124:0:Tyes6656416406380632631
HHEP235279:0:Tyes--01122---
HINF281310:0:Tyes177-9400-223222
HINF374930:0:Tyes46-922217-01
HINF71421:0:Tno159-9230-204203
HMOD498761:0:Tyes671832-18262830-
HNEP81032:0:Tyes2220--2460-12300
HSOM205914:1:Tyes115164816491213-10
HSOM228400:0:Tno1678148714880-15691568
ILOI283942:0:Tyes6-310248247
JSP290400:1:Tyes---0-17803522
JSP375286:0:Tyes1010-26731026462647
KPNE272620:2:Tyes7654310
KRAD266940:2:Fyes12--5927677630
LACI272621:0:Tyes7----0-
LBIF355278:2:Tyes------0
LBIF456481:2:Tno------0
LBOR355276:1:Tyes0-----2216
LBOR355277:1:Tno2164-----0
LBRE387344:2:Tyes0----8-
LCAS321967:1:Tyes12----0-
LCHO395495:0:Tyes3230-1251125236063607
LDEL321956:0:Tyes0----5-
LDEL390333:0:Tyes0----5-
LGAS324831:0:Tyes7----0-
LHEL405566:0:Tyes10----0-
LINN272626:1:Tno0--961-335-
LINT189518:1:Tyes0-----44
LINT267671:1:Tno28-----0
LINT363253:3:Tyes175--139-0-
LJOH257314:0:Tyes7----0-
LLAC272622:5:Tyes1188----0-
LLAC272623:0:Tyes1138----0-
LMES203120:1:Tyes52----0-
LMON169963:0:Tno0----264-
LMON265669:0:Tyes0----272-
LPLA220668:0:Tyes0----7-
LPNE272624:0:Tno1895212614281426142510
LPNE297245:1:Fno1778201813651363136210
LPNE297246:0:Fyes-0-----
LPNE297246:1:Fyes1906-13571355135410
LPNE400673:0:Tno486-31011921193
LREU557436:0:Tyes7--686-0-
LSAK314315:0:Tyes17----0-
LSPH444177:1:Tyes2465--0-2296-
LWEL386043:0:Tyes0----321-
LXYL281090:0:Tyes248--391-0-
MABS561007:1:Tyes0--531-13723452
MAER449447:0:Tyes412--52250--
MAQU351348:2:Tyes0-57832023203
MART243272:0:Tyes-----0-
MAVI243243:0:Tyes1481--2252--0
MBOV233413:0:Tno1350--2150--0
MBOV410289:0:Tno1342--2105--0
MCAP243233:0:Tyes1422-023762763
MEXT419610:0:Tyes-55021950-17421018
MFLA265072:0:Tyes0-20642062206120542053
MGIL350054:3:Tyes1524-----0
MLEP272631:0:Tyes727--566--0
MLOT266835:2:Tyes---2628-05414
MMAG342108:0:Tyes44774353-0--862
MMAR394221:0:Tyes1291--1233-0515
MMAZ192952:0:Tyes---0---
MPET420662:1:Tyes1993--3047304810
MPUL272635:0:Tyes-----0-
MSME246196:0:Tyes2842--0--4838
MSP164756:1:Tno0-----1564
MSP164757:0:Tno0-----1948
MSP189918:2:Tyes0-----1579
MSP266779:3:Tyes---2471-6200
MSP400668:0:Tyes3864-86-10
MSP409:2:Tyes--24140-28004681
MSUC221988:0:Tyes154464631497-10
MTBCDC:0:Tno1399--2247--0
MTBRV:0:Tno1319--2127--0
MTHE264732:0:Tyes0-32832510121092-
MTUB336982:0:Tno1334--2129--0
MTUB419947:0:Tyes1350--2188--0
MVAN350058:0:Tyes1632----03400
MXAN246197:0:Tyes0--6153651368710
NARO279238:0:Tyes1400----2260
NEUR228410:0:Tyes012312270370214121413
NEUT335283:2:Tyes01809181019991998136135
NFAR247156:2:Tyes0--685-25694461
NGON242231:0:Tyes0--15471548327328
NHAM323097:2:Tyes--5100-21103336
NMEN122586:0:Tno564--1012361235
NMEN122587:0:Tyes593--0112341233
NMEN272831:0:Tno494--1011011100
NMEN374833:0:Tno521--1011781177
NMUL323848:3:Tyes05115122643-23922391
NOCE323261:1:Tyes2039259225932595259601
NSP103690:6:Tyes464927351587019752638-
NSP35761:1:Tyes197--194401291162
NSP387092:0:Tyes-7110-374--
NWIN323098:0:Tyes--3980-19412694
OANT439375:4:Tyes---468-0-
OANT439375:5:Tyes--387---0
OCAR504832:0:Tyes--050-14843013
OIHE221109:0:Tyes634--0-534-
OTSU357244:0:Fyes-----0-
PABY272844:0:Tyes-0-----
PACN267747:0:Tyes696--0-200363
PAER208963:0:Tyes056891819
PAER208964:0:Tno0-5781718
PARC259536:0:Tyes1899-11121721601
PATL342610:0:Tyes29090334133393338750749
PCAR338963:0:Tyes16412142120473--
PCRY335284:1:Tyes2164-11723323201
PDIS435591:0:Tyes---0--880
PENT384676:0:Tyes0-46744644463
PFLU205922:0:Tyes1511108710
PFLU216595:1:Tyes14-108710
PFLU220664:0:Tyes1511108710
PFUR186497:0:Tyes-0-----
PGIN242619:0:Tyes---0---
PHAL326442:1:Tyes8-64310
PING357804:0:Tyes1635163316321630162901
PINT246198:1:Tyes---0---
PLUM243265:0:Fyes0-13456
PLUT319225:0:Tyes-0-140--294
PMAR146891:0:Tyes-----0-
PMAR167539:0:Tyes--0----
PMAR167546:0:Tyes----0--
PMAR167555:0:Tyes0------
PMAR59920:0:Tno0------
PMAR74546:0:Tyes----0--
PMAR74547:0:Tyes1897-6811970--
PMEN399739:0:Tyes3806380138003798379701
PMOB403833:0:Tyes---0---
PMUL272843:1:Tyes1554120112020-17581757
PNAP365044:8:Tyes54110121772030903091
PPEN278197:0:Tyes0----5-
PPRO298386:2:Tyes9764310
PPUT160488:0:Tno104-100989710
PPUT351746:0:Tyes104-100989710
PPUT76869:0:Tno105-101999810
PSP117:0:Tyes01757--42251664307
PSP296591:2:Tyes9402250228510740739
PSP312153:0:Tyes8541807-1561-10
PSP56811:2:Tyes164-1941759176001
PSTU379731:0:Tyes17-1210910
PSYR205918:0:Tyes0-3561213
PSYR223283:2:Tyes14-119810
PTHE370438:0:Tyes0105910631066378297-
RAKA293614:0:Fyes------0
RALB246199:0:Tyes0--11681082983-
RBEL336407:0:Tyes-----7960
RBEL391896:0:Fno-----9430
RCAN293613:0:Fyes-----7370
RCAS383372:0:Tyes349--27-0-
RCON272944:0:Tno------0
RDEN375451:4:Tyes---0-16133162
RETL347834:5:Tyes--29153118-8810
REUT264198:2:Tyes--0----
REUT264198:3:Tyes1789--2115211410
REUT381666:1:Tyes--0----
REUT381666:2:Tyes0--2087208618981899
RFEL315456:2:Tyes------0
RFER338969:1:Tyes8810103631303129629628
RLEG216596:6:Tyes-3464-3690-10400
RMAS416276:1:Tyes-----3230
RMET266264:1:Tyes--0----
RMET266264:2:Tyes0--2073207218781879
RPAL258594:0:Tyes---1888-22050
RPAL316055:0:Tyes---0-2949320
RPAL316056:0:Tyes--0224-2194732
RPAL316057:0:Tyes--01623-23513686
RPAL316058:0:Tyes--0278-23434418
RPOM246200:1:Tyes-631-3068-20150
RPRO272947:0:Tyes-----2940
RRIC392021:0:Fno-----4170
RRIC452659:0:Tyes-----4370
RRUB269796:1:Tyes35113397-1019030502931
RSAL288705:0:Tyes0------
RSOL267608:0:Tyes--0----
RSOL267608:1:Tyes1525--2052205110
RSP101510:3:Fyes349--0-60382540
RSP357808:0:Tyes0--997-971-
RSPH272943:4:Tyes---1207-01367
RSPH349101:2:Tno---1171-01331
RSPH349102:5:Tyes-149-2879-16340
RTYP257363:0:Tno-----2230
RXYL266117:0:Tyes---3220--
SACI56780:0:Tyes959109310924611880-
SAGA205921:0:Tno1005--0-1410-
SAGA208435:0:Tno0----489-
SAGA211110:0:Tyes1098--0-1494-
SALA317655:1:Tyes91--2888-7620
SARE391037:0:Tyes682415-2420-8800
SAUR158878:1:Tno0------
SAUR158879:1:Tno0------
SAUR196620:0:Tno0------
SAUR273036:0:Tno0------
SAUR282458:0:Tno0------
SAUR282459:0:Tno0------
SAUR359786:1:Tno0------
SAUR359787:1:Tno0------
SAUR367830:3:Tno0------
SAUR418127:0:Tyes0------
SAUR426430:0:Tno0------
SAUR93061:0:Fno0------
SAUR93062:1:Tno0------
SAVE227882:1:Fyes44--1011-17480
SBAL399599:3:Tyes11986510
SBAL402882:1:Tno11986510
SBOY300268:1:Tyes0123456
SCO:2:Fyes1423--591-01469
SDEG203122:0:Tyes10-64310
SDEN318161:0:Tyes13-119801
SDYS300267:1:Tyes0123456
SELO269084:0:Tyes---3343240-
SENT209261:0:Tno7654310
SENT220341:0:Tno7654310
SENT295319:0:Tno7654310
SENT321314:2:Tno7654310
SENT454169:2:Tno7654310
SEPI176279:1:Tyes0----439-
SEPI176280:0:Tno0----456-
SERY405948:0:Tyes0--4507--6040
SFLE198214:0:Tyes6543210
SFLE373384:0:Tno6543210
SFUM335543:0:Tyes0335529172908992--
SGLO343509:3:Tyes8764-10
SGOR29390:0:Tyes0----340-
SHAE279808:0:Tyes508----0-
SHAL458817:0:Tyes02356910
SHIGELLA:0:Tno6543210
SLAC55218:1:Fyes-1310-731-16900
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