CANDIDATE ID: 261

CANDIDATE ID: 261

NUMBER OF GENES: 7
AVERAGE SCORE:    9.9933171e-1 (range=[0.0,1.0])
AVERAGE MINIMUM BLAST P-VAL:    2.8572007e-1

Gene List
List of organisms containing most genes from the group
    Phylogenetic tree highlighting these organisms (opens new page)
List of organisms containing very few or no genes from the group
List of organisms enriched for group
List of organisms depleted for group
Phylogenetic profile similarity with known pathways
Pairwise genome context scores
Pairwise Blast scores
Pathway or protein complex matches in target organism
Genome context matrix
    Genes and their orthologs in genome browser BioCyc pages



GENE LIST:

- G7494 (yqeB) (b2875)
   Products of gene:
     - G7494-MONOMER (conserved protein with NAD(P)-binding Rossman fold)

- G7487 (xdhC) (b2868)
   Products of gene:
     - G7487-MONOMER (putative xanthine dehydrogenase, Fe-S subunit)
     - CPLX0-761 (xanthine dehydrogenase)
       Reactions:
        xanthine + NAD+ + H2O  ->  urate + NADH + H+
         In pathways
         URSIN-PWY (URSIN-PWY)
         P165-PWY (P165-PWY)
         PWY-5695 (PWY-5695)
         SALVADEHYPOX-PWY (salvage pathways of adenine, hypoxanthine, and their nucleosides)
         PWY-6237 (PWY-6237)
         P164-PWY (P164-PWY)
         PWY-5497 (PWY-5497)
         PWY-6538 (PWY-6538)
         PWY-6353 (PWY-6353)
         PWY-5044 (PWY-5044)
        hypoxanthine + H2O  ->  xanthine + 2 H+
         In pathways
         SALVADEHYPOX-PWY (salvage pathways of adenine, hypoxanthine, and their nucleosides)
         P164-PWY (P164-PWY)

- G7485 (xdhA) (b2866)
   Products of gene:
     - G7485-MONOMER (xanthine dehydrogenase subunit with putative molybdenum cofactor-binding domain)
     - CPLX0-761 (xanthine dehydrogenase)
       Reactions:
        xanthine + NAD+ + H2O  ->  urate + NADH + H+
         In pathways
         URSIN-PWY (URSIN-PWY)
         P165-PWY (P165-PWY)
         PWY-5695 (PWY-5695)
         SALVADEHYPOX-PWY (salvage pathways of adenine, hypoxanthine, and their nucleosides)
         PWY-6237 (PWY-6237)
         P164-PWY (P164-PWY)
         PWY-5497 (PWY-5497)
         PWY-6538 (PWY-6538)
         PWY-6353 (PWY-6353)
         PWY-5044 (PWY-5044)
        hypoxanthine + H2O  ->  xanthine + 2 H+
         In pathways
         SALVADEHYPOX-PWY (salvage pathways of adenine, hypoxanthine, and their nucleosides)
         P164-PWY (P164-PWY)

- G6157 (yagT) (b0286)
   Products of gene:
     - G6157-MONOMER (aldehyde ferredoxin oxidoreductase, Fe-S subunit)
     - CPLX0-7805 (aldehyde ferredoxin oxidoreductase)
       Reactions:
        an aldehyde[periplasmic space] + 2 oxidized ferredoxin[periplasmic space] + H2O[periplasmic space]  =  an acid[periplasmic space] + 2 reduced ferredoxin[periplasmic space] + 2 H+[periplasmic space]

- G6156 (yagS) (b0285)
   Products of gene:
     - G6156-MONOMER (aldehyde ferredoxin oxidoreductase, FAD-binding subunit)
     - CPLX0-7805 (aldehyde ferredoxin oxidoreductase)
       Reactions:
        an aldehyde[periplasmic space] + 2 oxidized ferredoxin[periplasmic space] + H2O[periplasmic space]  =  an acid[periplasmic space] + 2 reduced ferredoxin[periplasmic space] + 2 H+[periplasmic space]

- G6155 (yagR) (b0284)
   Products of gene:
     - G6155-MONOMER (aldehyde ferredoxin oxidoreductase: molybdenum cofactor-binding subunit)
     - CPLX0-7805 (aldehyde ferredoxin oxidoreductase)
       Reactions:
        an aldehyde[periplasmic space] + 2 oxidized ferredoxin[periplasmic space] + H2O[periplasmic space]  =  an acid[periplasmic space] + 2 reduced ferredoxin[periplasmic space] + 2 H+[periplasmic space]

- G6154 (yagQ) (b0283)
   Products of gene:
     - G6154-MONOMER (conserved protein)



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ORGANISMS CONTAINING AT LEAST 6 GENES FROM THE GROUP:

Total number of orgs: 145
Effective number of orgs (counting one per cluster within 468 clusters): 114

Organism list
Homologs in each organism in the list
Features enriched in organism list


Follow (ncbi) link, when present, to find the set of organism features for each organism
Org ID  Org Name  # genes in group found in org  
XCAM487884 Xanthomonas campestris pv. paulliniae7
XCAM316273 ncbi Xanthomonas campestris pv. vesicatoria str. 85-107
XCAM314565 ncbi Xanthomonas campestris pv. campestris str. 80047
XCAM190485 ncbi Xanthomonas campestris pv. campestris str. ATCC 339137
XAXO190486 ncbi Xanthomonas axonopodis pv. citri str. 3067
XAUT78245 ncbi Xanthobacter autotrophicus Py27
VEIS391735 ncbi Verminephrobacter eiseniae EF01-26
TTUR377629 ncbi Teredinibacter turnerae T79016
TROS309801 ncbi Thermomicrobium roseum DSM 51597
STOK273063 ncbi Sulfolobus tokodaii 76
SSP644076 Silicibacter sp. TrichCH4B6
SSP292414 ncbi Ruegeria sp. TM10406
SSOL273057 ncbi Sulfolobus solfataricus P26
SPRO399741 ncbi Serratia proteamaculans 5686
SMEL266834 ncbi Sinorhizobium meliloti 10217
SMED366394 ncbi Sinorhizobium medicae WSM4197
SLAC55218 Ruegeria lacuscaerulensis7
SFUM335543 ncbi Syntrophobacter fumaroxidans MPOB6
SERY405948 ncbi Saccharopolyspora erythraea NRRL 23387
SCO ncbi Streptomyces coelicolor A3(2)7
SBOY300268 ncbi Shigella boydii Sb2276
SAVE227882 ncbi Streptomyces avermitilis MA-46807
SARE391037 ncbi Salinispora arenicola CNS-2057
SACI330779 ncbi Sulfolobus acidocaldarius DSM 6396
RXYL266117 ncbi Rubrobacter xylanophilus DSM 99417
RSPH349102 ncbi Rhodobacter sphaeroides ATCC 170257
RSPH349101 ncbi Rhodobacter sphaeroides ATCC 170297
RSPH272943 ncbi Rhodobacter sphaeroides 2.4.17
RSP357808 ncbi Roseiflexus sp. RS-17
RSP101510 ncbi Rhodococcus jostii RHA17
RRUB269796 ncbi Rhodospirillum rubrum ATCC 111706
RPOM246200 ncbi Ruegeria pomeroyi DSS-37
RPAL316058 ncbi Rhodopseudomonas palustris HaA27
RPAL316057 ncbi Rhodopseudomonas palustris BisB57
RPAL316056 ncbi Rhodopseudomonas palustris BisB187
RPAL316055 ncbi Rhodopseudomonas palustris BisA537
RPAL258594 ncbi Rhodopseudomonas palustris CGA0097
RMET266264 ncbi Ralstonia metallidurans CH346
RLEG216596 ncbi Rhizobium leguminosarum bv. viciae 38417
REUT381666 ncbi Ralstonia eutropha H167
REUT264198 ncbi Ralstonia eutropha JMP1347
RDEN375451 ncbi Roseobacter denitrificans OCh 1146
RCAS383372 ncbi Roseiflexus castenholzii DSM 139417
PTHE370438 ncbi Pelotomaculum thermopropionicum SI7
PSYR223283 ncbi Pseudomonas syringae pv. tomato str. DC30007
PSYR205918 ncbi Pseudomonas syringae pv. syringae B728a6
PSTU379731 ncbi Pseudomonas stutzeri A15017
PSP56811 Psychrobacter sp.7
PSP296591 ncbi Polaromonas sp. JS6667
PPUT351746 ncbi Pseudomonas putida F16
PPUT160488 ncbi Pseudomonas putida KT24406
PNAP365044 ncbi Polaromonas naphthalenivorans CJ26
PMOB403833 ncbi Petrotoga mobilis SJ956
PMEN399739 ncbi Pseudomonas mendocina ymp7
PFLU216595 ncbi Pseudomonas fluorescens SBW257
PFLU205922 ncbi Pseudomonas fluorescens Pf0-17
PCRY335284 ncbi Psychrobacter cryohalolentis K57
PAER208964 ncbi Pseudomonas aeruginosa PAO16
PAER208963 ncbi Pseudomonas aeruginosa UCBPP-PA146
OCAR504832 ncbi Oligotropha carboxidovorans OM57
NWIN323098 ncbi Nitrobacter winogradskyi Nb-2556
NSP35761 Nocardioides sp.7
NHAM323097 ncbi Nitrobacter hamburgensis X147
MVAN350058 ncbi Mycobacterium vanbaalenii PYR-17
MTUB419947 ncbi Mycobacterium tuberculosis H37Ra7
MTUB336982 ncbi Mycobacterium tuberculosis F117
MTHE264732 ncbi Moorella thermoacetica ATCC 390737
MTBRV ncbi Mycobacterium tuberculosis H37Rv7
MSP409 Methylobacterium sp.7
MSP266779 ncbi Chelativorans sp. BNC17
MSP189918 ncbi Mycobacterium sp. KMS7
MSP164757 ncbi Mycobacterium sp. JLS7
MSP164756 ncbi Mycobacterium sp. MCS7
MSME246196 ncbi Mycobacterium smegmatis MC2 1557
MSED399549 ncbi Metallosphaera sedula DSM 53486
MMAG342108 ncbi Magnetospirillum magneticum AMB-17
MLOT266835 ncbi Mesorhizobium loti MAFF3030997
MGIL350054 ncbi Mycobacterium gilvum PYR-GCK7
MEXT419610 ncbi Methylobacterium extorquens PA17
MBOV410289 ncbi Mycobacterium bovis BCG str. Pasteur 1173P26
MBOV233413 ncbi Mycobacterium bovis AF2122/976
JSP375286 ncbi Janthinobacterium sp. Marseille6
JSP290400 ncbi Jannaschia sp. CCS17
HNEP81032 Hyphomonas neptunium7
HMOD498761 ncbi Heliobacterium modesticaldum Ice16
HMAR272569 ncbi Haloarcula marismortui ATCC 430496
GOXY290633 ncbi Gluconobacter oxydans 621H6
GMET269799 ncbi Geobacter metallireducens GS-156
GKAU235909 ncbi Geobacillus kaustophilus HTA4266
GFOR411154 ncbi Gramella forsetii KT08037
FSP1855 Frankia sp. EAN1pec7
FJOH376686 ncbi Flavobacterium johnsoniae UW1016
FALN326424 ncbi Frankia alni ACN14a6
EFER585054 ncbi Escherichia fergusonii ATCC 354696
ECOO157 ncbi Escherichia coli O157:H7 EDL9337
ECOL83334 Escherichia coli O157:H77
ECOL585397 ncbi Escherichia coli ED1a6
ECOL585056 ncbi Escherichia coli UMN0266
ECOL585055 ncbi Escherichia coli 559897
ECOL585035 ncbi Escherichia coli S886
ECOL585034 ncbi Escherichia coli IAI17
ECOL481805 ncbi Escherichia coli ATCC 87397
ECOL469008 ncbi Escherichia coli BL21(DE3)7
ECOL439855 ncbi Escherichia coli SMS-3-56
ECOL413997 ncbi Escherichia coli B str. REL6067
ECOL409438 ncbi Escherichia coli SE117
ECOL364106 ncbi Escherichia coli UTI896
ECOL362663 ncbi Escherichia coli 5366
ECOL331111 ncbi Escherichia coli E24377A7
ECOL316407 ncbi Escherichia coli K-12 substr. W31107
ECOL199310 ncbi Escherichia coli CFT0736
DSHI398580 ncbi Dinoroseobacter shibae DFL 127
DRED349161 ncbi Desulfotomaculum reducens MI-16
DRAD243230 ncbi Deinococcus radiodurans R17
DPSY177439 ncbi Desulfotalea psychrophila LSv547
DHAF138119 ncbi Desulfitobacterium hafniense Y517
DGEO319795 ncbi Deinococcus geothermalis DSM 113006
CSP501479 Citreicella sp. SE457
CSAL290398 ncbi Chromohalobacter salexigens DSM 30437
CDIF272563 ncbi Clostridium difficile 6306
BXEN266265 ncbi Burkholderia xenovorans LB4006
BVIE269482 ncbi Burkholderia vietnamiensis G47
BSP376 Bradyrhizobium sp.7
BPET94624 Bordetella petrii6
BPER257313 ncbi Bordetella pertussis Tohama I7
BJAP224911 ncbi Bradyrhizobium japonicum USDA 1107
BHAL272558 ncbi Bacillus halodurans C-1256
BCEN331272 ncbi Burkholderia cenocepacia HI24247
BCEN331271 ncbi Burkholderia cenocepacia AU 10547
BBRO257310 ncbi Bordetella bronchiseptica RB507
BAMB398577 ncbi Burkholderia ambifaria MC40-67
BAMB339670 ncbi Burkholderia ambifaria AMMD7
AVAR240292 ncbi Anabaena variabilis ATCC 294137
ASP76114 ncbi Aromatoleum aromaticum EbN17
ASP1667 Arthrobacter sp.7
APER272557 ncbi Aeropyrum pernix K16
AORE350688 ncbi Alkaliphilus oremlandii OhILAs6
AMET293826 ncbi Alkaliphilus metalliredigens QYMF7
AFER243159 ncbi Acidithiobacillus ferrooxidans ATCC 232706
ACRY349163 ncbi Acidiphilium cryptum JF-57
ACEL351607 ncbi Acidothermus cellulolyticus 11B7
ACAU438753 ncbi Azorhizobium caulinodans ORS 5717
ABAU360910 ncbi Bordetella avium 197N7
ABAC204669 ncbi Candidatus Koribacter versatilis Ellin3456
AAVE397945 ncbi Acidovorax citrulli AAC00-17


Names of the homologs of the genes in the group in each of these orgs
  G7494   G7487   G7485   G6157   G6156   G6155   G6154   
XCAM487884 XCC-B100_1437XCC-B100_3252XCC-B100_1436XCC-B100_1434XCC-B100_1435XCC-B100_1436XCC-B100_1437
XCAM316273 XCAORF_3090XCAORF_1308XCAORF_3091XCAORF_3093XCAORF_3092XCAORF_3091XCAORF_3090
XCAM314565 XC_1388XC_3156XC_1387XC_1385XC_1386XC_3780XC_1388
XCAM190485 XCC2726XCC1093XCC2727XCC2729XCC2728XCC2727XCC2726
XAXO190486 XAC2891XAC1189XAC2893XAC2895XAC2894XAC2893XAC2892
XAUT78245 XAUT_0125XAUT_1289XAUT_1289XAUT_4210XAUT_0647XAUT_1289XAUT_3910
VEIS391735 VEIS_4534VEIS_4544VEIS_5001VEIS_4544VEIS_4542VEIS_4534
TTUR377629 TERTU_2065TERTU_4681TERTU_2066TERTU_4681TERTU_2067TERTU_2776
TROS309801 TRD_A0236TRD_A0776TRD_A0069TRD_A0776TRD_A0566TRD_A0400TRD_1212
STOK273063 ST0121ST0561ST1781ST1782ST1783ST2339
SSP644076 SCH4B_2006SCH4B_2009SCH4B_2920SCH4B_0781SCH4B_1343SCH4B_2006
SSP292414 TM1040_0497TM1040_1766TM1040_1705TM1040_3147TM1040_1765TM1040_1768
SSOL273057 SSO1292SSO2433SSO2639SSO2433SSO2636SSO3239
SPRO399741 SPRO_2302SPRO_2492SPRO_2301SPRO_2314SPRO_2301SPRO_4020
SMEL266834 SMC00518SMB20131SMB20132SMA2349SMA2351SMA2353SMC00518
SMED366394 SMED_1482SMED_4004SMED_4003SMED_5356SMED_4734SMED_5354SMED_1482
SLAC55218 SL1157_3074SL1157_0407SL1157_0131SL1157_3382SL1157_0408SL1157_0406SL1157_3074
SFUM335543 SFUM_1316SFUM_2011SFUM_2012SFUM_2509SFUM_2511SFUM_2510
SERY405948 SACE_0535SACE_4018SACE_4872SACE_4466SACE_4467SACE_4468SACE_1258
SCO SCO1131SCO2941SCO2940SCO1134SCO0690SCO1132SCO6174
SBOY300268 SBO_3109SBO_3117SBO_3119SBO_3118SBO_3119SBO_3109
SAVE227882 SAV1536SAV5136SAV2067SAV1540SAV7383SAV7384SAV7506
SARE391037 SARE_0200SARE_0203SARE_0201SARE_0203SARE_0202SARE_0201SARE_0200
SACI330779 SACI_1021SACI_2270SACI_2271SACI_0917SACI_2269SACI_1009
RXYL266117 RXYL_0117RXYL_2837RXYL_2839RXYL_1873RXYL_1871RXYL_1872RXYL_0117
RSPH349102 RSPH17025_0331RSPH17025_1142RSPH17025_3947RSPH17025_3204RSPH17025_3205RSPH17025_3206RSPH17025_0331
RSPH349101 RSPH17029_0586RSPH17029_1524RSPH17029_3945RSPH17029_3943RSPH17029_3944RSPH17029_3945RSPH17029_0586
RSPH272943 RSP_1935RSP_2878RSP_3206RSP_3204RSP_3205RSP_3206RSP_1935
RSP357808 ROSERS_0501ROSERS_0340ROSERS_2447ROSERS_0340ROSERS_0342ROSERS_1142ROSERS_0501
RSP101510 RHA1_RO03494RHA1_RO04977RHA1_RO05013RHA1_RO00133RHA1_RO00134RHA1_RO00135RHA1_RO05229
RRUB269796 RRU_A0970RRU_A0965RRU_A0965RRU_A0967RRU_A0966RRU_A0964
RPOM246200 SPO_2394SPO_A0413SPO_0830SPO_2398SPO_2399SPO_A0414SPO_2640
RPAL316058 RPB_0955RPB_4413RPB_4416RPB_4513RPB_4512RPB_4511RPB_3674
RPAL316057 RPD_1059RPD_1525RPD_1524RPD_0916RPD_0915RPD_0914RPD_1786
RPAL316056 RPC_4316RPC_1015RPC_1014RPC_1133RPC_1132RPC_1131RPC_1635
RPAL316055 RPE_4368RPE_0591RPE_3213RPE_4568RPE_0589RPE_3213RPE_1659
RPAL258594 RPA4634RPA0670RPA0671RPA3803RPA0672RPA0671RPA3799
RMET266264 RMET_0359RMET_0365RMET_0364RMET_0365RMET_0363RMET_0359
RLEG216596 PRL120299PRL80024PRL80025PRL120302PRL120301PRL120300PRL120299
REUT381666 H16_A0433H16_B0745H16_A3371H16_B1896H16_B1897H16_B1898H16_A0433
REUT264198 REUT_C6439REUT_B3596REUT_A3076REUT_B4505REUT_B4506REUT_B4507REUT_C6439
RDEN375451 RD1_2976RD1_2974RD1_1533RD1_2974RD1_A0087RD1_2976
RCAS383372 RCAS_1256RCAS_0843RCAS_3983RCAS_0843RCAS_0841RCAS_3983RCAS_1256
PTHE370438 PTH_1534PTH_1579PTH_1538PTH_1579PTH_1540PTH_1538PTH_0686
PSYR223283 PSPTO_3662PSPTO_4652PSPTO_2863PSPTO_2861PSPTO_2862PSPTO_2863PSPTO_2657
PSYR205918 PSYR_1813PSYR_4285PSYR_4285PSYR_4284PSYR_2390PSYR_2391
PSTU379731 PST_0922PST_0924PST_3082PST_0924PST_0925PST_0926PST_0922
PSP56811 PSYCPRWF_1010PSYCPRWF_1007PSYCPRWF_1009PSYCPRWF_1007PSYCPRWF_1008PSYCPRWF_1009PSYCPRWF_1010
PSP296591 BPRO_0572BPRO_0578BPRO_3394BPRO_0578BPRO_0576BPRO_0577BPRO_0572
PPUT351746 PPUT_1588PPUT_2435PPUT_2435PPUT_2434PPUT_2433PPUT_1633
PPUT160488 PP_4280PP_3308PP_3308PP_3309PP_3310PP_4231
PNAP365044 PNAP_2697PNAP_2695PNAP_2695PNAP_2695PNAP_2695PNAP_2697
PMOB403833 PMOB_1734PMOB_1735PMOB_1732PMOB_1739PMOB_1732PMOB_1734
PMEN399739 PMEN_2753PMEN_2347PMEN_2752PMEN_2347PMEN_2346PMEN_2345PMEN_4481
PFLU216595 PFLU4594PFLU5350PFLU4593PFLU5350PFLU5349PFLU5348PFLU4716
PFLU205922 PFL_1795PFL_2109PFL_2107PFL_2109PFL_2108PFL_2107PFL_4168
PCRY335284 PCRYO_1806PCRYO_1809PCRYO_1141PCRYO_1809PCRYO_1808PCRYO_1807PCRYO_1806
PAER208964 PA1522PA1931PA1931PA1932PA1933PA4618
PAER208963 PA14_44760PA14_39540PA14_39540PA14_39530PA14_39520PA14_61120
OCAR504832 OCAR_5485OCAR_5618OCAR_5616OCAR_5618OCAR_5617OCAR_5616OCAR_5485
NWIN323098 NWI_2200NWI_2205NWI_1079NWI_2205NWI_2204NWI_2201
NSP35761 NOCA_0633NOCA_4272NOCA_1634NOCA_0229NOCA_1489NOCA_4271NOCA_3973
NHAM323097 NHAM_2602NHAM_1039NHAM_1454NHAM_1039NHAM_1040NHAM_1041NHAM_2603
MVAN350058 MVAN_5182MVAN_5186MVAN_5281MVAN_2076MVAN_2077MVAN_2075MVAN_5182
MTUB419947 MRA_0385MRA_0383MRA_0382MRA_0383MRA_0384MRA_0382MRA_0385
MTUB336982 TBFG_10381TBFG_10379TBFG_10378TBFG_10379TBFG_10380TBFG_10378TBFG_10381
MTHE264732 MOTH_2002MOTH_1958MOTH_1960MOTH_1961MOTH_1959MOTH_1999MOTH_2005
MTBRV RV0376CRV0374CRV0373CRV0374CRV0375CRV0373CRV0376C
MSP409 M446_3532M446_2669M446_1983M446_0292M446_0293M446_0294M446_5448
MSP266779 MESO_1293MESO_0058MESO_4559MESO_0582MESO_0581MESO_0580MESO_1293
MSP189918 MKMS_0499MKMS_4691MKMS_0502MKMS_0449MKMS_0448MKMS_0447MKMS_0499
MSP164757 MJLS_0477MJLS_4986MJLS_0480MJLS_0426MJLS_0425MJLS_0424MJLS_0477
MSP164756 MMCS_0488MMCS_4603MMCS_0491MMCS_0439MMCS_0438MMCS_0437MMCS_0488
MSME246196 MSMEG_0743MSMEG_5883MSMEG_1291MSMEG_0686MSMEG_0685MSMEG_0684MSMEG_0743
MSED399549 MSED_1387MSED_0298MSED_0297MSED_0298MSED_0609MSED_0297
MMAG342108 AMB0850AMB2882AMB2020AMB2882AMB2021AMB2020AMB2022
MLOT266835 MLR0092MLL2289MLL4880MLR1925MLR1926MLR1927MLR0091
MGIL350054 MFLV_1574MFLV_1570MFLV_1573MFLV_0282MFLV_0283MFLV_0284MFLV_1574
MEXT419610 MEXT_1056MEXT_0835MEXT_1728MEXT_3665MEXT_3666MEXT_3667MEXT_1055
MBOV410289 BCG_0414CBCG_0412CBCG_0411CBCG_0412CBCG_0413CBCG_0414C
MBOV233413 MB0383CMB0381CMB0380CMB0381CMB0382CMB0383C
JSP375286 MMA_0764MMA_0776MMA_0774MMA_0766MMA_0506MMA_0764
JSP290400 JANN_2092JANN_1763JANN_2947JANN_2096JANN_2949JANN_1765JANN_1761
HNEP81032 HNE_1070HNE_1073HNE_1071HNE_1073HNE_1072HNE_1071HNE_1070
HMOD498761 HM1_2638HM1_2646HM1_2648HM1_2646HM1_2647HM1_2648
HMAR272569 PNG7241PNG7245PNG7246PNG7245PNG7246PNG7241
GOXY290633 GOX0448GOX1495GOX0653GOX1495GOX1494GOX0448
GMET269799 GMET_2138GMET_2135GMET_2136GMET_2135GMET_2134GMET_2136
GKAU235909 GKP23GKP18GK0379GKP18GKP19GKP23
GFOR411154 GFO_0448GFO_0441GFO_0443GFO_0441GFO_0442GFO_0443GFO_0448
FSP1855 FRANEAN1_6196FRANEAN1_4710FRANEAN1_3211FRANEAN1_3209FRANEAN1_4711FRANEAN1_4699FRANEAN1_3212
FJOH376686 FJOH_4205FJOH_4202FJOH_4202FJOH_4201FJOH_4200FJOH_4205
FALN326424 FRAAL3797FRAAL6160FRAAL6161FRAAL6160FRAAL6159FRAAL3797
EFER585054 EFER_2822EFER_2821EFER_2819EFER_2820EFER_2821EFER_2822
ECOO157 Z4214Z4207Z4205YAGTYAGSYAGRYAGQ
ECOL83334 ECS3748ECS3741ECS3739ECS0316ECS0315ECS0314ECS0313
ECOL585397 ECED1_3335ECED1_3328ECED1_3326ECED1_3327ECED1_3326ECED1_3335
ECOL585056 ECUMN_3218ECUMN_3211ECUMN_3209ECUMN_0316ECUMN_0315ECUMN_0314
ECOL585055 EC55989_3162EC55989_3155EC55989_3153EC55989_0291EC55989_0290EC55989_0289EC55989_0288
ECOL585035 ECS88_3154ECS88_3147ECS88_3145ECS88_3146ECS88_3145ECS88_3154
ECOL585034 ECIAI1_2995ECIAI1_2988ECIAI1_2986ECIAI1_0287ECIAI1_0286ECIAI1_0285ECIAI1_0284
ECOL481805 ECOLC_0833ECOLC_0840ECOLC_0842ECOLC_3333ECOLC_3334ECOLC_3335ECOLC_3336
ECOL469008 ECBD_0862ECBD_0869ECBD_0871ECBD_3371ECBD_3372ECBD_3373ECBD_3374
ECOL439855 ECSMS35_3008ECSMS35_3001ECSMS35_2999ECSMS35_3000ECSMS35_2999ECSMS35_3008
ECOL413997 ECB_02708ECB_02701ECB_02699ECB_00245ECB_00244ECB_00243ECB_00242
ECOL409438 ECSE_3139ECSE_3132ECSE_3130ECSE_0304ECSE_0303ECSE_0302ECSE_0301
ECOL364106 UTI89_C3260UTI89_C3253UTI89_C3251UTI89_C3252UTI89_C3251UTI89_C3260
ECOL362663 ECP_2869ECP_2862ECP_2860ECP_2861ECP_2860ECP_2869
ECOL331111 ECE24377A_3200ECE24377A_3193ECE24377A_3191ECE24377A_0297ECE24377A_0296ECE24377A_0295ECE24377A_0294
ECOL316407 ECK2871:JW2843:B2875ECK2864:JW2836:B2868ECK2862:JW5462:B2866ECK0285:JW0280:B0286ECK0284:JW0279:B0285ECK0283:JW0278:B0284ECK0282:JW0277:B0283
ECOL199310 C3453C3446C3444C3445C3444C3453
DSHI398580 DSHI_1215DSHI_4201DSHI_4202DSHI_2660DSHI_4200DSHI_2959DSHI_2351
DRED349161 DRED_0314DRED_2773DRED_1504DRED_1503DRED_1504DRED_0315
DRAD243230 DR_A0129DR_A0235DR_A0231DR_A0233DR_A0232DR_A0231DR_A0179
DPSY177439 DP1871DP2532DP2531DP2532DP1724DP2531DP0263
DHAF138119 DSY0869DSY0864DSY1987DSY0864DSY0866DSY0865DSY1980
DGEO319795 DGEO_2605DGEO_1948DGEO_1948DGEO_1946DGEO_2604DGEO_0385
CSP501479 CSE45_1533CSE45_4668CSE45_2402CSE45_5039CSE45_4669CSE45_5041CSE45_1533
CSAL290398 CSAL_1787CSAL_0527CSAL_0529CSAL_0527CSAL_0528CSAL_0529CSAL_0531
CDIF272563 CD3478CD2088CD2073CD2088CD2099CD1561
BXEN266265 BXE_C0035BXE_B0075BXE_B2533BXE_B2224BXE_B2225BXE_C1225
BVIE269482 BCEP1808_3142BCEP1808_3042BCEP1808_0770BCEP1808_3042BCEP1808_3041BCEP1808_3040BCEP1808_3142
BSP376 BRADO5451BRADO6663BRADO1736BRADO2882BRADO2883BRADO2884BRADO2861
BPET94624 BPET2473BPET3936BPET3936BPET3935BPET3934BPET2473
BPER257313 BP2128BP0684ABP0685BP0684ABP0684BP0685BP2128
BJAP224911 BLL5660BLR5209BLR6161BLR5209BLR5210BLR5211BLL5661
BHAL272558 BH1974BH0749BH0748BH0749BH0748BH1974
BCEN331272 BCEN2424_3057BCEN2424_2955BCEN2424_2953BCEN2424_2955BCEN2424_2954BCEN2424_2953BCEN2424_3057
BCEN331271 BCEN_2443BCEN_2341BCEN_2339BCEN_2341BCEN_2340BCEN_2339BCEN_2443
BBRO257310 BB2416BB0391BB0392BB0391BB0390BB0392BB2416
BAMB398577 BAMMC406_2968BAMMC406_2864BAMMC406_5518BAMMC406_2864BAMMC406_2863BAMMC406_2862BAMMC406_2968
BAMB339670 BAMB_3102BAMB_3001BAMB_5751BAMB_3001BAMB_3000BAMB_2999BAMB_3102
AVAR240292 AVA_C0125AVA_C0128AVA_C0126AVA_C0128AVA_C0127AVA_C0126AVA_C0125
ASP76114 EBA2089EBA3604EBA3603EBA3604EBA3602EBA3603EBA3601
ASP1667 ARTH_3422ARTH_2040ARTH_3420ARTH_2040ARTH_2041ARTH_3420ARTH_2033
APER272557 APE2227APE2213APE2216APE2213APE2219APE0708
AORE350688 CLOS_1965CLOS_0878CLOS_0879CLOS_0376CLOS_0877CLOS_0879
AMET293826 AMET_4563AMET_4570AMET_0472AMET_4570AMET_0681AMET_0683AMET_4564
AFER243159 AFE_2260AFE_2264AFE_2265AFE_2230AFE_2232AFE_2231
ACRY349163 ACRY_0474ACRY_0511ACRY_1968ACRY_0511ACRY_0510ACRY_0509ACRY_0474
ACEL351607 ACEL_1631ACEL_1637ACEL_1642ACEL_1637ACEL_1638ACEL_1642ACEL_1631
ACAU438753 AZC_1052AZC_2939AZC_4623AZC_1402AZC_1401AZC_1400AZC_2930
ABAU360910 BAV3407BAV2737BAV2736BAV2737BAV2738BAV2736BAV1587
ABAC204669 ACID345_2647ACID345_1931ACID345_3111ACID345_0763ACID345_0762ACID345_2647
AAVE397945 AAVE_4011AAVE_3926AAVE_1129AAVE_4014AAVE_1486AAVE_1485AAVE_4011


Organism features enriched in list (features available for 132 out of the 145 orgs in the list)
Feature    Pvalue       Num occurrences in list  Total num occurrences  
Arrangment:Chains 0.0003601992
Arrangment:Filaments 0.0096282610
Disease:Opportunistic_infections 0.009877645
GC_Content_Range4:0-40 1.298e-189213
GC_Content_Range4:40-60 0.007441640224
GC_Content_Range4:60-100 1.647e-2783145
GC_Content_Range7:0-30 0.0000494147
GC_Content_Range7:30-40 7.948e-138166
GC_Content_Range7:40-50 4.677e-78117
GC_Content_Range7:60-70 5.991e-2678134
Genome_Size_Range5:0-2 1.849e-191155
Genome_Size_Range5:2-4 0.000029026197
Genome_Size_Range5:4-6 1.545e-1174184
Genome_Size_Range5:6-10 2.769e-113147
Genome_Size_Range9:1-2 2.030e-151128
Genome_Size_Range9:2-3 0.000014711120
Genome_Size_Range9:4-5 0.00013143696
Genome_Size_Range9:5-6 1.547e-63888
Genome_Size_Range9:6-8 2.641e-82438
Genome_Size_Range9:8-10 0.000593579
Gram_Stain:Gram_Neg 0.001910889333
Habitat:Host-associated 0.000080229206
Habitat:Multiple 0.000171757178
Motility:Yes 0.000019781267
Optimal_temp.:25-30 5.056e-101719
Optimal_temp.:37 0.006524715106
Oxygen_Req:Aerobic 5.366e-663185
Oxygen_Req:Anaerobic 0.000464811102
Pathogenic_in:Animal 0.0005081566
Pathogenic_in:Human 3.652e-627213
Pathogenic_in:No 0.000062170226
Shape:Branched_filament 0.002536244
Shape:Coccus 0.0020930982
Shape:Rod 7.790e-8104347
Shape:Spiral 0.0066792234



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ORGANISMS CONTAINING AT MOST 1 GENES FROM THE GROUP:

Total number of orgs: 389
Effective number of orgs (counting one per cluster within 468 clusters): 285

Organism list
Homologs in each organism in the list
Features enriched in organism list


Follow (ncbi) link, when present, to find the set of organism features for each organism
Org ID  Org Name  # genes in group found in org  
ZMOB264203 ncbi Zymomonas mobilis mobilis ZM40
YPSE349747 ncbi Yersinia pseudotuberculosis IP 317580
YPSE273123 ncbi Yersinia pseudotuberculosis IP 329530
YPES386656 ncbi Yersinia pestis Pestoides F0
YPES377628 ncbi Yersinia pestis Nepal5160
YPES360102 ncbi Yersinia pestis Antiqua0
YPES349746 ncbi Yersinia pestis Angola0
YPES214092 ncbi Yersinia pestis CO920
YPES187410 ncbi Yersinia pestis KIM 100
YENT393305 ncbi Yersinia enterocolitica enterocolitica 80810
XORY360094 ncbi Xanthomonas oryzae pv. oryzae PXO99A0
XORY342109 ncbi Xanthomonas oryzae pv. oryzae MAFF 3110180
XORY291331 ncbi Xanthomonas oryzae pv. oryzae KACC103310
XFAS405440 ncbi Xylella fastidiosa M120
XFAS183190 ncbi Xylella fastidiosa Temecula10
XFAS160492 ncbi Xylella fastidiosa 9a5c0
WSUC273121 ncbi Wolinella succinogenes DSM 17400
WPIP955 Wolbachia pipientis0
WPIP80849 Wolbachia endosymbiont of Brugia malayi0
VVUL216895 ncbi Vibrio vulnificus CMCP60
VVUL196600 ncbi Vibrio vulnificus YJ0160
VPAR223926 ncbi Vibrio parahaemolyticus RIMD 22106330
VFIS312309 ncbi Vibrio fischeri ES1140
VCHO345073 ncbi Vibrio cholerae O3950
VCHO ncbi Vibrio cholerae O1 biovar El Tor str. N169610
UURE95667 Ureaplasma urealyticum serovar 130
UURE95664 Ureaplasma urealyticum serovar 100
UPAR505682 ncbi Ureaplasma parvum serovar 3 str. ATCC 278150
UMET351160 ncbi uncultured methanogenic archaeon RC-I0
TWHI218496 ncbi Tropheryma whipplei TW08/270
TWHI203267 ncbi Tropheryma whipplei Twist0
TVOL273116 ncbi Thermoplasma volcanium GSS10
TTHE300852 ncbi Thermus thermophilus HB80
TTHE262724 ncbi Thermus thermophilus HB270
TTEN273068 ncbi Thermoanaerobacter tengcongensis MB40
TSP28240 Thermotoga sp.0
TSP1755 Thermoanaerobacter sp.0
TPSE340099 ncbi Thermoanaerobacter pseudethanolicus ATCC 332230
TPET390874 ncbi Thermotoga petrophila RKU-10
TPEN368408 ncbi Thermofilum pendens Hrk 50
TPAL243276 ncbi Treponema pallidum pallidum Nichols0
TMAR243274 ncbi Thermotoga maritima MSB80
TLET416591 ncbi Thermotoga lettingae TMO0
TKOD69014 ncbi Thermococcus kodakarensis KOD10
TFUS269800 ncbi Thermobifida fusca YX1
TERY203124 ncbi Trichodesmium erythraeum IMS1010
TELO197221 ncbi Thermosynechococcus elongatus BP-10
TDEN326298 ncbi Sulfurimonas denitrificans DSM 12510
TDEN292415 ncbi Thiobacillus denitrificans ATCC 252590
TDEN243275 ncbi Treponema denticola ATCC 354050
TCRU317025 ncbi Thiomicrospira crunogena XCL-20
TACI273075 ncbi Thermoplasma acidophilum DSM 17280
STYP99287 ncbi Salmonella enterica enterica serovar Typhimurium str. LT20
STRO369723 ncbi Salinispora tropica CNB-4400
STHE322159 ncbi Streptococcus thermophilus LMD-90
STHE299768 ncbi Streptococcus thermophilus CNRZ10660
STHE292459 ncbi Symbiobacterium thermophilum IAM 148631
STHE264199 ncbi Streptococcus thermophilus LMG 183110
SSUI391296 ncbi Streptococcus suis 98HAH330
SSUI391295 ncbi Streptococcus suis 05ZYH330
SSP94122 ncbi Shewanella sp. ANA-30
SSP84588 ncbi Synechococcus sp. WH 81020
SSP64471 ncbi Synechococcus sp. CC93110
SSP387093 ncbi Sulfurovum sp. NBC37-10
SSP321332 ncbi Synechococcus sp. JA-2-3Ba(2-13)1
SSP321327 ncbi Synechococcus sp. JA-3-3Ab0
SSP1148 ncbi Synechocystis sp. PCC 68030
SSP1131 Synechococcus sp. CC96050
SSED425104 ncbi Shewanella sediminis HAW-EB30
SSAP342451 ncbi Staphylococcus saprophyticus saprophyticus ATCC 153050
SRUB309807 ncbi Salinibacter ruber DSM 138550
SPYO370554 ncbi Streptococcus pyogenes MGAS107500
SPYO370553 ncbi Streptococcus pyogenes MGAS20960
SPYO370552 ncbi Streptococcus pyogenes MGAS102700
SPYO370551 ncbi Streptococcus pyogenes MGAS94290
SPYO319701 ncbi Streptococcus pyogenes MGAS61800
SPYO293653 ncbi Streptococcus pyogenes MGAS50050
SPYO286636 ncbi Streptococcus pyogenes MGAS103940
SPYO198466 ncbi Streptococcus pyogenes MGAS3150
SPYO193567 ncbi Streptococcus pyogenes SSI-10
SPYO186103 ncbi Streptococcus pyogenes MGAS82320
SPYO160490 ncbi Streptococcus pyogenes M1 GAS0
SPNE488221 ncbi Streptococcus pneumoniae 705850
SPNE487214 ncbi Streptococcus pneumoniae Hungary19A-60
SPNE487213 ncbi Streptococcus pneumoniae Taiwan19F-140
SPNE171101 ncbi Streptococcus pneumoniae R60
SPNE170187 ncbi Streptococcus pneumoniae G540
SPNE1313 Streptococcus pneumoniae0
SPEA398579 ncbi Shewanella pealeana ATCC 7003450
SONE211586 ncbi Shewanella oneidensis MR-10
SMUT210007 ncbi Streptococcus mutans UA1590
SLOI323850 ncbi Shewanella loihica PV-40
SHAE279808 ncbi Staphylococcus haemolyticus JCSC14350
SGOR29390 Streptococcus gordonii Challis0
SGLO343509 ncbi Sodalis glossinidius morsitans0
SEPI176280 ncbi Staphylococcus epidermidis ATCC 122280
SEPI176279 ncbi Staphylococcus epidermidis RP62A0
SENT454169 ncbi Salmonella enterica enterica serovar Heidelberg str. SL4760
SENT321314 ncbi Salmonella enterica enterica serovar Choleraesuis str. SC-B670
SENT295319 ncbi Salmonella enterica enterica serovar Paratyphi A str. ATCC 91500
SENT220341 ncbi Salmonella enterica enterica serovar Typhi str. CT180
SENT209261 ncbi Salmonella enterica enterica serovar Typhi str. Ty20
SELO269084 ncbi Synechococcus elongatus PCC 63010
SDYS300267 ncbi Shigella dysenteriae Sd1970
SDEN318161 ncbi Shewanella denitrificans OS2170
SBAL402882 ncbi Shewanella baltica OS1850
SBAL399599 ncbi Shewanella baltica OS1950
SAUR93062 ncbi Staphylococcus aureus aureus COL0
SAUR93061 ncbi Staphylococcus aureus aureus NCTC 83250
SAUR426430 ncbi Staphylococcus aureus aureus Newman0
SAUR418127 ncbi Staphylococcus aureus aureus Mu30
SAUR367830 Staphylococcus aureus aureus USA3000
SAUR359787 ncbi Staphylococcus aureus aureus JH10
SAUR359786 ncbi Staphylococcus aureus aureus JH90
SAUR282459 ncbi Staphylococcus aureus aureus MSSA4760
SAUR282458 ncbi Staphylococcus aureus aureus MRSA2520
SAUR273036 ncbi Staphylococcus aureus RF1220
SAUR196620 ncbi Staphylococcus aureus aureus MW20
SAUR158879 ncbi Staphylococcus aureus aureus N3150
SAUR158878 ncbi Staphylococcus aureus aureus Mu500
SALA317655 ncbi Sphingopyxis alaskensis RB22560
SAGA211110 ncbi Streptococcus agalactiae NEM3160
SAGA208435 ncbi Streptococcus agalactiae 2603V/R0
SAGA205921 ncbi Streptococcus agalactiae A9090
SACI56780 ncbi Syntrophus aciditrophicus SB1
RTYP257363 ncbi Rickettsia typhi Wilmington0
RSAL288705 ncbi Renibacterium salmoninarum ATCC 332090
RRIC452659 ncbi Rickettsia rickettsii Iowa0
RRIC392021 ncbi Rickettsia rickettsii Sheila Smith0
RPRO272947 ncbi Rickettsia prowazekii Madrid E0
RMAS416276 ncbi Rickettsia massiliae MTU50
RFEL315456 ncbi Rickettsia felis URRWXCal20
RCON272944 ncbi Rickettsia conorii Malish 70
RCAN293613 ncbi Rickettsia canadensis McKiel0
RBEL391896 ncbi Rickettsia bellii OSU 85-3890
RBEL336407 ncbi Rickettsia bellii RML369-C0
RALB246199 Ruminococcus albus 80
RAKA293614 ncbi Rickettsia akari Hartford0
PSP117 Pirellula sp.0
PRUM264731 ncbi Prevotella ruminicola 230
PPEN278197 ncbi Pediococcus pentosaceus ATCC 257450
PMUL272843 ncbi Pasteurella multocida multocida Pm700
PMAR93060 ncbi Prochlorococcus marinus MIT 92150
PMAR74547 ncbi Prochlorococcus marinus MIT 93130
PMAR74546 ncbi Prochlorococcus marinus MIT 93120
PMAR59920 ncbi Prochlorococcus marinus NATL2A0
PMAR167555 ncbi Prochlorococcus marinus NATL1A0
PMAR167546 ncbi Prochlorococcus marinus MIT 93010
PMAR167542 ncbi Prochlorococcus marinus MIT 95150
PMAR167540 Prochlorococcus marinus pastoris MED4ax0
PMAR167539 ncbi Prochlorococcus marinus marinus CCMP13750
PMAR146891 ncbi Prochlorococcus marinus AS96010
PLUT319225 ncbi Chlorobium luteolum DSM 2730
PLUM243265 ncbi Photorhabdus luminescens laumondii TTO10
PINT246198 Prevotella intermedia 170
PING357804 ncbi Psychromonas ingrahamii 371
PHOR70601 ncbi Pyrococcus horikoshii OT30
PHAL326442 ncbi Pseudoalteromonas haloplanktis TAC1250
PGIN242619 ncbi Porphyromonas gingivalis W830
PFUR186497 ncbi Pyrococcus furiosus DSM 36380
PDIS435591 ncbi Parabacteroides distasonis ATCC 85030
PAST100379 Onion yellows phytoplasma0
PARC259536 ncbi Psychrobacter arcticus 273-40
PACN267747 ncbi Propionibacterium acnes KPA1712020
PABY272844 ncbi Pyrococcus abyssi GE50
OTSU357244 ncbi Orientia tsutsugamushi Boryong0
OIHE221109 ncbi Oceanobacillus iheyensis HTE8310
NSP387092 ncbi Nitratiruptor sp. SB155-20
NSP103690 ncbi Nostoc sp. PCC 71200
NSEN222891 ncbi Neorickettsia sennetsu Miyayama0
NPHA348780 ncbi Natronomonas pharaonis DSM 21600
NOCE323261 ncbi Nitrosococcus oceani ATCC 197070
NMUL323848 ncbi Nitrosospira multiformis ATCC 251960
NMEN374833 ncbi Neisseria meningitidis 0534420
NMEN272831 ncbi Neisseria meningitidis FAM180
NMEN122587 ncbi Neisseria meningitidis Z24910
NMEN122586 ncbi Neisseria meningitidis MC580
NGON242231 ncbi Neisseria gonorrhoeae FA 10900
NEUT335283 ncbi Nitrosomonas eutropha C910
NEUR228410 ncbi Nitrosomonas europaea ATCC 197180
MTHE349307 ncbi Methanosaeta thermophila PT0
MTHE187420 ncbi Methanothermobacter thermautotrophicus Delta H0
MSYN262723 ncbi Mycoplasma synoviae 530
MSUC221988 ncbi Mannheimia succiniciproducens MBEL55E0
MSTA339860 ncbi Methanosphaera stadtmanae DSM 30910
MPUL272635 ncbi Mycoplasma pulmonis UAB CTIP0
MPNE272634 ncbi Mycoplasma pneumoniae M1290
MPEN272633 ncbi Mycoplasma penetrans HF-20
MMYC272632 ncbi Mycoplasma mycoides mycoides SC str. PG10
MMOB267748 ncbi Mycoplasma mobile 163K0
MMAZ192952 ncbi Methanosarcina mazei Go10
MMAR444158 ncbi Methanococcus maripaludis C60
MMAR426368 ncbi Methanococcus maripaludis C70
MMAR402880 ncbi Methanococcus maripaludis C50
MMAR394221 ncbi Maricaulis maris MCS100
MMAR368407 ncbi Methanoculleus marisnigri JR10
MMAR267377 ncbi Methanococcus maripaludis S20
MLEP272631 ncbi Mycobacterium leprae TN0
MLAB410358 ncbi Methanocorpusculum labreanum Z0
MKAN190192 ncbi Methanopyrus kandleri AV190
MJAN243232 ncbi Methanocaldococcus jannaschii DSM 26610
MHYO295358 ncbi Mycoplasma hyopneumoniae 2320
MHYO262722 ncbi Mycoplasma hyopneumoniae 74480
MHYO262719 ncbi Mycoplasma hyopneumoniae J0
MHUN323259 ncbi Methanospirillum hungatei JF-11
MGEN243273 ncbi Mycoplasma genitalium G370
MFLO265311 ncbi Mesoplasma florum L10
MCAP340047 ncbi Mycoplasma capricolum capricolum ATCC 273430
MCAP243233 ncbi Methylococcus capsulatus Bath0
MBUR259564 ncbi Methanococcoides burtonii DSM 62420
MBAR269797 ncbi Methanosarcina barkeri Fusaro0
MAVI243243 ncbi Mycobacterium avium 1040
MART243272 ncbi Mycoplasma arthritidis 158L3-10
MAER449447 ncbi Microcystis aeruginosa NIES-8430
MAEO419665 ncbi Methanococcus aeolicus Nankai-30
MACE188937 ncbi Methanosarcina acetivorans C2A0
LXYL281090 ncbi Leifsonia xyli xyli CTCB070
LWEL386043 ncbi Listeria welshimeri serovar 6b str. SLCC53340
LSPH444177 ncbi Lysinibacillus sphaericus C3-410
LSAK314315 ncbi Lactobacillus sakei sakei 23K0
LREU557436 ncbi Lactobacillus reuteri DSM 200160
LPNE400673 ncbi Legionella pneumophila Corby0
LPNE297246 ncbi Legionella pneumophila Paris0
LPNE297245 ncbi Legionella pneumophila Lens0
LPNE272624 ncbi Legionella pneumophila pneumophila Philadelphia 10
LPLA220668 ncbi Lactobacillus plantarum WCFS10
LMON265669 ncbi Listeria monocytogenes 4b F23650
LMON169963 ncbi Listeria monocytogenes EGD-e0
LMES203120 ncbi Leuconostoc mesenteroides mesenteroides ATCC 82930
LLAC272623 ncbi Lactococcus lactis lactis Il14030
LLAC272622 ncbi Lactococcus lactis cremoris SK110
LJOH257314 ncbi Lactobacillus johnsonii NCC 5330
LINT363253 ncbi Lawsonia intracellularis PHE/MN1-000
LINT267671 ncbi Leptospira interrogans serovar Copenhageni str. Fiocruz L1-1300
LINT189518 ncbi Leptospira interrogans serovar Lai str. 566010
LINN272626 ncbi Listeria innocua Clip112620
LHEL405566 ncbi Lactobacillus helveticus DPC 45710
LGAS324831 ncbi Lactobacillus gasseri ATCC 333230
LDEL390333 ncbi Lactobacillus delbrueckii bulgaricus ATCC 118420
LDEL321956 ncbi Lactobacillus delbrueckii bulgaricus ATCC BAA-3650
LCAS321967 ncbi Lactobacillus casei ATCC 3340
LBRE387344 ncbi Lactobacillus brevis ATCC 3670
LBOR355277 ncbi Leptospira borgpetersenii serovar Hardjo-bovis JB1970
LBOR355276 ncbi Leptospira borgpetersenii serovar Hardjo-bovis L5500
LBIF456481 ncbi Leptospira biflexa serovar Patoc strain Patoc 1 (Paris)0
LBIF355278 ncbi Leptospira biflexa serovar Patoc strain Patoc 1 (Ames)0
LACI272621 ncbi Lactobacillus acidophilus NCFM0
KPNE272620 ncbi Klebsiella pneumoniae pneumoniae MGH 785780
ILOI283942 ncbi Idiomarina loihiensis L2TR0
IHOS453591 ncbi Ignicoccus hospitalis KIN4/I0
HSP64091 ncbi Halobacterium sp. NRC-10
HSOM228400 ncbi Haemophilus somnus 23360
HSOM205914 ncbi Haemophilus somnus 129PT0
HSAL478009 ncbi Halobacterium salinarum R10
HPYL85963 ncbi Helicobacter pylori J990
HPYL357544 ncbi Helicobacter pylori HPAG10
HPY ncbi Helicobacter pylori 266950
HMUK485914 ncbi Halomicrobium mukohataei DSM 122860
HINF71421 ncbi Haemophilus influenzae Rd KW200
HINF374930 ncbi Haemophilus influenzae PittEE0
HINF281310 ncbi Haemophilus influenzae 86-028NP0
HHEP235279 ncbi Helicobacter hepaticus ATCC 514490
HHAL349124 ncbi Halorhodospira halophila SL10
HDUC233412 ncbi Haemophilus ducreyi 35000HP0
HBUT415426 ncbi Hyperthermus butylicus DSM 54560
HAUR316274 ncbi Herpetosiphon aurantiacus ATCC 237790
HACI382638 ncbi Helicobacter acinonychis Sheeba0
GVIO251221 ncbi Gloeobacter violaceus PCC 74210
GSUL243231 ncbi Geobacter sulfurreducens PCA1
FTUL458234 ncbi Francisella tularensis holarctica FTNF002-000
FTUL418136 ncbi Francisella tularensis tularensis WY96-34180
FTUL401614 ncbi Francisella novicida U1120
FTUL393115 ncbi Francisella tularensis tularensis FSC1980
FTUL393011 ncbi Francisella tularensis holarctica OSU180
FTUL351581 Francisella tularensis holarctica FSC2000
FSUC59374 ncbi Fibrobacter succinogenes succinogenes S850
FRANT ncbi Francisella tularensis tularensis SCHU S40
FPHI484022 ncbi Francisella philomiragia philomiragia ATCC 250170
FNUC190304 ncbi Fusobacterium nucleatum nucleatum ATCC 255860
FNOD381764 ncbi Fervidobacterium nodosum Rt17-B10
ESP42895 Enterobacter sp.0
ERUM302409 ncbi Ehrlichia ruminantium Gardel0
ERUM254945 ncbi Ehrlichia ruminantium Welgevonden0
ECHA205920 ncbi Ehrlichia chaffeensis Arkansas0
ECAR218491 ncbi Pectobacterium atrosepticum SCRI10430
ECAN269484 ncbi Ehrlichia canis Jake0
DSP255470 ncbi Dehalococcoides sp. CBDB10
DSP216389 ncbi Dehalococcoides sp. BAV10
DOLE96561 ncbi Desulfococcus oleovorans Hxd30
DNOD246195 ncbi Dichelobacter nodosus VCS1703A0
DETH243164 ncbi Dehalococcoides ethenogenes 1950
CVES412965 ncbi Candidatus Vesicomyosocius okutanii HA0
CTRA471473 ncbi Chlamydia trachomatis L2b/UCH-1/proctitis0
CTRA471472 ncbi Chlamydia trachomatis 434/Bu0
CTEP194439 ncbi Chlorobium tepidum TLS0
CSUL444179 ncbi Candidatus Sulcia muelleri GWSS0
CRUT413404 ncbi Candidatus Ruthia magnifica Cm (Calyptogena magnifica)0
CPRO264201 ncbi Candidatus Protochlamydia amoebophila UWE250
CPNE182082 ncbi Chlamydophila pneumoniae TW-1830
CPNE138677 ncbi Chlamydophila pneumoniae J1380
CPNE115713 ncbi Chlamydophila pneumoniae CWL0290
CPNE115711 ncbi Chlamydophila pneumoniae AR390
CPER289380 ncbi Clostridium perfringens SM1010
CPER195103 ncbi Clostridium perfringens ATCC 131240
CPER195102 ncbi Clostridium perfringens 130
CPEL335992 ncbi Candidatus Pelagibacter ubique HTCC10620
CNOV386415 ncbi Clostridium novyi NT0
CMUR243161 ncbi Chlamydia muridarum Nigg0
CMET456442 ncbi Candidatus Methanoregula boonei 6A80
CMAQ397948 ncbi Caldivirga maquilingensis IC-1670
CKOR374847 ncbi Candidatus Korarchaeum cryptofilum OPF80
CKLU431943 ncbi Clostridium kluyveri DSM 5550
CJEJ407148 ncbi Campylobacter jejuni jejuni 811160
CJEJ360109 ncbi Campylobacter jejuni doylei 269.970
CJEJ354242 ncbi Campylobacter jejuni jejuni 81-1760
CJEJ195099 ncbi Campylobacter jejuni RM12210
CJEJ192222 ncbi Campylobacter jejuni jejuni NCTC 111680
CJEI306537 ncbi Corynebacterium jeikeium K4110
CJAP155077 Cellvibrio japonicus1
CHUT269798 ncbi Cytophaga hutchinsonii ATCC 334060
CHOM360107 ncbi Campylobacter hominis ATCC BAA-3810
CGLU196627 ncbi Corynebacterium glutamicum ATCC 130320
CFET360106 ncbi Campylobacter fetus fetus 82-400
CFEL264202 ncbi Chlamydophila felis Fe/C-560
CEFF196164 ncbi Corynebacterium efficiens YS-3140
CDIP257309 ncbi Corynebacterium diphtheriae NCTC 131290
CDES477974 ncbi Candidatus Desulforudis audaxviator MP104C0
CCUR360105 ncbi Campylobacter curvus 525.920
CCON360104 ncbi Campylobacter concisus 138260
CCHL340177 ncbi Chlorobium chlorochromatii CaD30
CCAV227941 ncbi Chlamydophila caviae GPIC0
CBUR434922 ncbi Coxiella burnetii Dugway 5J108-1110
CBUR360115 ncbi Coxiella burnetii RSA 3310
CBUR227377 ncbi Coxiella burnetii RSA 4930
CBLO291272 ncbi Candidatus Blochmannia pennsylvanicus BPEN0
CBLO203907 ncbi Candidatus Blochmannia floridanus0
CACE272562 ncbi Clostridium acetobutylicum ATCC 8240
CABO218497 ncbi Chlamydophila abortus S26/30
BWEI315730 ncbi Bacillus weihenstephanensis KBAB40
BTUR314724 ncbi Borrelia turicatae 91E1350
BTRI382640 ncbi Bartonella tribocorum CIP 1054760
BTHU412694 ncbi Bacillus thuringiensis Al Hakam0
BTHU281309 ncbi Bacillus thuringiensis serovar konkukian str. 97-270
BTHE226186 ncbi Bacteroides thetaiotaomicron VPI-54820
BSUI204722 ncbi Brucella suis 13301
BSP107806 ncbi Buchnera aphidicola APS (Acyrthosiphon pisum)0
BQUI283165 ncbi Bartonella quintana Toulouse0
BPUM315750 ncbi Bacillus pumilus SAFR-0320
BOVI236 Brucella ovis1
BMEL359391 ncbi Brucella melitensis biovar Abortus 23080
BMEL224914 ncbi Brucella melitensis bv. 1 str. 16M1
BLON206672 ncbi Bifidobacterium longum NCC27050
BLIC279010 ncbi Bacillus licheniformis ATCC 145800
BHER314723 ncbi Borrelia hermsii DAH0
BHEN283166 ncbi Bartonella henselae Houston-10
BGAR290434 ncbi Borrelia garinii PBi0
BFRA295405 ncbi Bacteroides fragilis YCH460
BFRA272559 ncbi Bacteroides fragilis NCTC 93430
BCIC186490 Candidatus Baumannia cicadellinicola0
BCER572264 ncbi Bacillus cereus 03BB1020
BCER405917 Bacillus cereus W0
BCER315749 ncbi Bacillus cytotoxicus NVH 391-980
BCER288681 ncbi Bacillus cereus E33L0
BBUR224326 ncbi Borrelia burgdorferi B310
BBAC360095 ncbi Bartonella bacilliformis KC5830
BBAC264462 ncbi Bdellovibrio bacteriovorus HD1001
BAPH372461 ncbi Buchnera aphidicola Cc (Cinara cedri)0
BAPH198804 ncbi Buchnera aphidicola Sg (Schizaphis graminum)0
BANT592021 ncbi Bacillus anthracis A02480
BANT568206 ncbi Bacillus anthracis CDC 6840
BANT261594 ncbi Bacillus anthracis Ames Ancestor0
BANT260799 ncbi Bacillus anthracis Sterne0
BAFZ390236 ncbi Borrelia afzelii PKo0
BABO262698 ncbi Brucella abortus bv. 1 str. 9-9410
AYEL322098 ncbi Aster yellows witches-broom phytoplasma AYWB0
AURANTIMONAS Aurantimonas manganoxydans SI85-9A10
ASP62977 ncbi Acinetobacter sp. ADP11
ASAL382245 ncbi Aeromonas salmonicida salmonicida A4490
APLE434271 ncbi Actinobacillus pleuropneumoniae serovar 3 str. JL030
APLE416269 ncbi Actinobacillus pleuropneumoniae L200
APHA212042 ncbi Anaplasma phagocytophilum HZ0
ANAE240017 Actinomyces oris MG10
AMAR329726 ncbi Acaryochloris marina MBIC110171
AMAR234826 ncbi Anaplasma marginale St. Maries0
ALAI441768 ncbi Acholeplasma laidlawii PG-8A0
AFUL224325 ncbi Archaeoglobus fulgidus DSM 43040
ABUT367737 ncbi Arcobacter butzleri RM40180
ABOR393595 ncbi Alcanivorax borkumensis SK20
AAEO224324 ncbi Aquifex aeolicus VF50


Names of the homologs of the genes in the group in each of these orgs
  G7494   G7487   G7485   G6157   G6156   G6155   G6154   
ZMOB264203
YPSE349747
YPSE273123
YPES386656
YPES377628
YPES360102
YPES349746
YPES214092
YPES187410
YENT393305
XORY360094
XORY342109
XORY291331
XFAS405440
XFAS183190
XFAS160492
WSUC273121
WPIP955
WPIP80849
VVUL216895
VVUL196600
VPAR223926
VFIS312309
VCHO345073
VCHO
UURE95667
UURE95664
UPAR505682
UMET351160
TWHI218496
TWHI203267
TVOL273116
TTHE300852
TTHE262724
TTEN273068
TSP28240
TSP1755
TPSE340099
TPET390874
TPEN368408
TPAL243276
TMAR243274
TLET416591
TKOD69014
TFUS269800 TFU_2587
TERY203124
TELO197221
TDEN326298
TDEN292415
TDEN243275
TCRU317025
TACI273075
STYP99287
STRO369723
STHE322159
STHE299768
STHE292459 STH2206
STHE264199
SSUI391296
SSUI391295
SSP94122
SSP84588
SSP64471
SSP387093
SSP321332 CYB_0330
SSP321327
SSP1148
SSP1131
SSED425104
SSAP342451
SRUB309807
SPYO370554
SPYO370553
SPYO370552
SPYO370551
SPYO319701
SPYO293653
SPYO286636
SPYO198466
SPYO193567
SPYO186103
SPYO160490
SPNE488221
SPNE487214
SPNE487213
SPNE171101
SPNE170187
SPNE1313
SPEA398579
SONE211586
SMUT210007
SLOI323850
SHAE279808
SGOR29390
SGLO343509
SEPI176280
SEPI176279
SENT454169
SENT321314
SENT295319
SENT220341
SENT209261
SELO269084
SDYS300267
SDEN318161
SBAL402882
SBAL399599
SAUR93062
SAUR93061
SAUR426430
SAUR418127
SAUR367830
SAUR359787
SAUR359786
SAUR282459
SAUR282458
SAUR273036
SAUR196620
SAUR158879
SAUR158878
SALA317655
SAGA211110
SAGA208435
SAGA205921
SACI56780 SYN_01045
RTYP257363
RSAL288705
RRIC452659
RRIC392021
RPRO272947
RMAS416276
RFEL315456
RCON272944
RCAN293613
RBEL391896
RBEL336407
RALB246199
RAKA293614
PSP117
PRUM264731
PPEN278197
PMUL272843
PMAR93060
PMAR74547
PMAR74546
PMAR59920
PMAR167555
PMAR167546
PMAR167542
PMAR167540
PMAR167539
PMAR146891
PLUT319225
PLUM243265
PINT246198
PING357804 PING_1831
PHOR70601
PHAL326442
PGIN242619
PFUR186497
PDIS435591
PAST100379
PARC259536
PACN267747
PABY272844
OTSU357244
OIHE221109
NSP387092
NSP103690
NSEN222891
NPHA348780
NOCE323261
NMUL323848
NMEN374833
NMEN272831
NMEN122587
NMEN122586
NGON242231
NEUT335283
NEUR228410
MTHE349307
MTHE187420
MSYN262723
MSUC221988
MSTA339860
MPUL272635
MPNE272634
MPEN272633
MMYC272632
MMOB267748
MMAZ192952
MMAR444158
MMAR426368
MMAR402880
MMAR394221
MMAR368407
MMAR267377
MLEP272631
MLAB410358
MKAN190192
MJAN243232
MHYO295358
MHYO262722
MHYO262719
MHUN323259 MHUN_2013
MGEN243273
MFLO265311
MCAP340047
MCAP243233
MBUR259564
MBAR269797
MAVI243243
MART243272
MAER449447
MAEO419665
MACE188937
LXYL281090
LWEL386043
LSPH444177
LSAK314315
LREU557436
LPNE400673
LPNE297246
LPNE297245
LPNE272624
LPLA220668
LMON265669
LMON169963
LMES203120
LLAC272623
LLAC272622
LJOH257314
LINT363253
LINT267671
LINT189518
LINN272626
LHEL405566
LGAS324831
LDEL390333
LDEL321956
LCAS321967
LBRE387344
LBOR355277
LBOR355276
LBIF456481
LBIF355278
LACI272621
KPNE272620
ILOI283942
IHOS453591
HSP64091
HSOM228400
HSOM205914
HSAL478009
HPYL85963
HPYL357544
HPY
HMUK485914
HINF71421
HINF374930
HINF281310
HHEP235279
HHAL349124
HDUC233412
HBUT415426
HAUR316274
HACI382638
GVIO251221
GSUL243231 GSU_0202
FTUL458234
FTUL418136
FTUL401614
FTUL393115
FTUL393011
FTUL351581
FSUC59374
FRANT
FPHI484022
FNUC190304
FNOD381764
ESP42895
ERUM302409
ERUM254945
ECHA205920
ECAR218491
ECAN269484
DSP255470
DSP216389
DOLE96561
DNOD246195
DETH243164
CVES412965
CTRA471473
CTRA471472
CTEP194439
CSUL444179
CRUT413404
CPRO264201
CPNE182082
CPNE138677
CPNE115713
CPNE115711
CPER289380
CPER195103
CPER195102
CPEL335992
CNOV386415
CMUR243161
CMET456442
CMAQ397948
CKOR374847
CKLU431943
CJEJ407148
CJEJ360109
CJEJ354242
CJEJ195099
CJEJ192222
CJEI306537
CJAP155077 CJA_0548
CHUT269798
CHOM360107
CGLU196627
CFET360106
CFEL264202
CEFF196164
CDIP257309
CDES477974
CCUR360105
CCON360104
CCHL340177
CCAV227941
CBUR434922
CBUR360115
CBUR227377
CBLO291272
CBLO203907
CACE272562
CABO218497
BWEI315730
BTUR314724
BTRI382640
BTHU412694
BTHU281309
BTHE226186
BSUI204722 BR_0350
BSP107806
BQUI283165
BPUM315750
BOVI236 GBOORF0382
BMEL359391
BMEL224914 BMEI1574
BLON206672
BLIC279010
BHER314723
BHEN283166
BGAR290434
BFRA295405
BFRA272559
BCIC186490
BCER572264
BCER405917
BCER315749
BCER288681
BBUR224326
BBAC360095
BBAC264462 BD2635
BAPH372461
BAPH198804
BANT592021
BANT568206
BANT261594
BANT260799
BAFZ390236
BABO262698
AYEL322098
AURANTIMONAS
ASP62977 ACIAD2466
ASAL382245
APLE434271
APLE416269
APHA212042
ANAE240017
AMAR329726 AM1_0249
AMAR234826
ALAI441768
AFUL224325
ABUT367737
ABOR393595
AAEO224324


Organism features enriched in list (features available for 366 out of the 389 orgs in the list)
Feature    Pvalue       Num occurrences in list  Total num occurrences  
Arrangment:Chains 0.00493676892
Arrangment:Clusters 0.00334251617
Arrangment:Filaments 0.0061800210
Disease:Toxic-shock_syndrome_and_staphylococcal_scarlet_fever 0.00563981111
Disease:Wide_range_of_infections 0.00563981111
Endospores:No 0.0001526152211
Endospores:Yes 0.00051662253
GC_Content_Range4:0-40 3.923e-24188213
GC_Content_Range4:60-100 1.347e-3429145
GC_Content_Range7:0-30 0.00723403747
GC_Content_Range7:30-40 1.832e-21151166
GC_Content_Range7:40-50 1.026e-695117
GC_Content_Range7:50-60 0.000718653107
GC_Content_Range7:60-70 6.602e-2929134
Genome_Size_Range5:0-2 3.894e-30150155
Genome_Size_Range5:2-4 0.0000359145197
Genome_Size_Range5:4-6 1.041e-1966184
Genome_Size_Range5:6-10 1.315e-14547
Genome_Size_Range9:0-1 2.396e-62727
Genome_Size_Range9:1-2 6.814e-23123128
Genome_Size_Range9:2-3 8.533e-9101120
Genome_Size_Range9:4-5 2.405e-83696
Genome_Size_Range9:5-6 2.200e-93088
Genome_Size_Range9:6-8 6.441e-12438
Genome_Size_Range9:8-10 0.001943719
Gram_Stain:Gram_Neg 0.0078365197333
Habitat:Host-associated 4.081e-10163206
Habitat:Multiple 0.000023690178
Habitat:Terrestrial 0.00103281131
Motility:No 0.0000545114151
Motility:Yes 3.663e-9134267
Optimal_temp.:25-30 1.461e-7119
Optimal_temp.:30 0.0036722415
Optimal_temp.:30-37 0.00218851718
Oxygen_Req:Aerobic 8.321e-790185
Oxygen_Req:Facultative 0.0074159138201
Pathogenic_in:Animal 0.00062765366
Pathogenic_in:Human 2.298e-6159213
Pathogenic_in:No 2.437e-6116226
Shape:Coccus 0.00003966782
Shape:Irregular_coccus 0.00334251617
Shape:Rod 2.320e-13177347
Shape:Sphere 0.00142691819
Shape:Spiral 0.00011863134



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ORGANISMS ENRICHED FOR GROUP:

Total number of orgs: 11
Effective number of orgs (counting one per cluster within 468 clusters): 9

Organism list
Homologs in each organism in the list
Features enriched in organism list


Follow (ncbi) link, when present, to find the set of organism features for each organism
Org ID  Org Name    Pvalue       # genes in tgt genome found in org  # genes in group found in org  
APER272557 ncbi Aeropyrum pernix K1 0.00016972986
STOK273063 ncbi Sulfolobus tokodaii 7 0.00052673606
SACI330779 ncbi Sulfolobus acidocaldarius DSM 639 0.00053553616
MSED399549 ncbi Metallosphaera sedula DSM 5348 0.00060063686
SSOL273057 ncbi Sulfolobus solfataricus P2 0.00111254086
MTBRV ncbi Mycobacterium tuberculosis H37Rv 0.00303758667
ACEL351607 ncbi Acidothermus cellulolyticus 11B 0.00311218697
MTUB336982 ncbi Mycobacterium tuberculosis F11 0.00313748707
MTUB419947 ncbi Mycobacterium tuberculosis H37Ra 0.00316288717
SMAR399550 ncbi Staphylothermus marinus F1 0.00484582735
GFOR411154 ncbi Gramella forsetii KT0803 0.00560789457


Names of the homologs of the genes in the group in each of these orgs
  G7494   G7487   G7485   G6157   G6156   G6155   G6154   
APER272557 APE2227APE2213APE2216APE2213APE2219APE0708
STOK273063 ST0121ST0561ST1781ST1782ST1783ST2339
SACI330779 SACI_1021SACI_2270SACI_2271SACI_0917SACI_2269SACI_1009
MSED399549 MSED_1387MSED_0298MSED_0297MSED_0298MSED_0609MSED_0297
SSOL273057 SSO1292SSO2433SSO2639SSO2433SSO2636SSO3239
MTBRV RV0376CRV0374CRV0373CRV0374CRV0375CRV0373CRV0376C
ACEL351607 ACEL_1631ACEL_1637ACEL_1642ACEL_1637ACEL_1638ACEL_1642ACEL_1631
MTUB336982 TBFG_10381TBFG_10379TBFG_10378TBFG_10379TBFG_10380TBFG_10378TBFG_10381
MTUB419947 MRA_0385MRA_0383MRA_0382MRA_0383MRA_0384MRA_0382MRA_0385
SMAR399550 SMAR_0033SMAR_0356SMAR_0357SMAR_0356SMAR_0357
GFOR411154 GFO_0448GFO_0441GFO_0443GFO_0441GFO_0442GFO_0443GFO_0448


Organism features enriched in list (features available for 11 out of the 11 orgs in the list)
Feature    Pvalue       Num occurrences in list  Total num occurrences  
Disease:Tuberculosis 0.000957523
Endospores:No 0.00220089211
Gram_Stain:Gram_Neg 0.00833702333
Habitat:Specialized 0.0001303653
Motility:No 0.00122948151
Oxygen_Req:Aerobic 0.000066710185
Shape:Coccus 0.0096515582
Temp._range:Hyperthermophilic 0.0004850423
Temp._range:Mesophilic 0.00011923473



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ORGANISMS DEPLETED FOR GROUP:

Total number of orgs: 4
Effective number of orgs (counting one per cluster within 468 clusters): 1

Organism list
Homologs in each organism in the list
Features enriched in organism list


Follow (ncbi) link, when present, to find the set of organism features for each organism
Org ID  Org Name    Pvalue       # genes in tgt genome found in org  # genes in group found in org  
SENT220341 ncbi Salmonella enterica enterica serovar Typhi str. CT18 0.009198034750
SENT321314 ncbi Salmonella enterica enterica serovar Choleraesuis str. SC-B67 0.008884334800
STYP99287 ncbi Salmonella enterica enterica serovar Typhimurium str. LT2 0.005607835440
SENT454169 ncbi Salmonella enterica enterica serovar Heidelberg str. SL476 0.004470935740


Organism features enriched in list (features available for 4 out of the 4 orgs in the list)
Feature    Pvalue       Num occurrences in list  Total num occurrences  
Disease:Gastroenteritis_and_food_poisoning 0.006861111
Disease:Salmonellosis_and_swine_paratyphoid 0.006861111
GC_Content_Range7:50-60 0.00108324107
Genome_Size_Range5:4-6 0.00970114184



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PHYLOGENETIC PROFILE SIMILARITY WITH KNOWN PATHWAYS:

Pathways or complexes with absolute value of Pearson coefficient with respect to candidate larger than 0.4 are listed below
The candidate is assumed to exist in orgs listed in section List of organisms containing most genes from the group


Pathway or complex  # Orgs containing it  # of those orgs also containing candidate  Pearson Coeff  
TRESYN-PWY (trehalose biosynthesis I)171920.4443
P108-PWY (pyruvate fermentation to propionate I)160880.4413
P344-PWY (acrylonitrile degradation)2101010.4188
GLYSYN-THR-PWY (glycine biosynthesis IV)2151010.4072
PWY0-321 (phenylacetate degradation I (aerobic))155820.4035



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PAIRWISE GENOME CONTEXT SCORE MATRIX:

  G7487   G7485   G6157   G6156   G6155   G6154   
G74940.9992060.9992590.9991870.998760.999180.999769
G74870.9996260.9996790.9995350.9996350.999055
G74850.999360.9992240.999660.998816
G61570.9997210.9997120.999122
G61560.9997180.998743
G61550.998999
G6154



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PAIRWISE BLAST SCORES:

  G7494   G7487   G7485   G6157   G6156   G6155   G6154   
G74940.0f0-----4.7e-7
G7487-0.0f0-7.6e-21---
G7485--0.0f0--1.9e-48-
G6157---0.0f0---
G6156----0.0f0--
G6155--3.6e-30--0.0f0-
G61544.0e-5-----0.0f0



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PATHWAYS OR PROTEIN COMPLEX MATCHES IN TARGET ORG:

For each case, all genes involved in the pathway or complex are listed. For each gene we list: a tag indicating whether the gene is part of the candidate list or not, the average and the minimum scores of the gene to the candidate list, the gene name, and its product names.

- SALVADEHYPOX-PWY (salvage pathways of adenine, hypoxanthine, and their nucleosides) (degree of match pw to cand: 0.182, degree of match cand to pw: 0.286, average score: 0.555)
  Genes in pathway or complex:
             0.5711 0.3831 EG10039 (amn) AMP-NUCLEOSID-MONOMER (Amn)
             0.8271 0.7060 EG10051 (apt) ADENPRIBOSYLTRAN-MONOMER (Apt)
             0.2772 0.0942 G85 (xapA) XANTHOSINEPHOSPHORY-MONOMER (XapA)
             0.4120 0.2661 EG10222 (deoD) DEOD-MONOMER (DeoD)
             0.2767 0.1229 EG10030 (add) ADENODEAMIN-MONOMER (deoxyadenosine deaminase / adenosine deaminase)
             0.3957 0.1319 EG11102 (gsk) GSK-MONOMER (Gsk)
   *in cand* 0.9995 0.9991 G7487 (xdhC) G7487-MONOMER (putative xanthine dehydrogenase, Fe-S subunit)
             0.9990 0.9969 G7486 (xdhB) G7486-MONOMER (putative xanthine dehydrogenase subunit, FAD-binding domain)
   *in cand* 0.9994 0.9988 G7485 (xdhA) G7485-MONOMER (xanthine dehydrogenase subunit with putative molybdenum cofactor-binding domain)
             0.6424 0.2894 EG20098 (hpt) HYPOXANPRIBOSYLTRAN-MONOMER (hypoxanthine-guanine phosphoribosyltransferase)
             0.7298 0.1514 EG10414 (gpt) GPT-MONOMER (Gpt)
  Genes in candidate but not in this pathway or complex:
   *in cand* 0.9992 0.9987 G6154 (yagQ) G6154-MONOMER (conserved protein)
   *in cand* 0.9996 0.9990 G6155 (yagR) G6155-MONOMER (aldehyde ferredoxin oxidoreductase: molybdenum cofactor-binding subunit)
   *in cand* 0.9994 0.9987 G6156 (yagS) G6156-MONOMER (aldehyde ferredoxin oxidoreductase, FAD-binding subunit)
   *in cand* 0.9995 0.9991 G6157 (yagT) G6157-MONOMER (aldehyde ferredoxin oxidoreductase, Fe-S subunit)
   *in cand* 0.9993 0.9988 G7494 (yqeB) G7494-MONOMER (conserved protein with NAD(P)-binding Rossman fold)

- CPLX0-7805 (aldehyde ferredoxin oxidoreductase) (degree of match pw to cand: 1.000, degree of match cand to pw: 0.429, average score: 1.000)
  Genes in pathway or complex:
   *in cand* 0.9996 0.9990 G6155 (yagR) G6155-MONOMER (aldehyde ferredoxin oxidoreductase: molybdenum cofactor-binding subunit)
   *in cand* 0.9994 0.9987 G6156 (yagS) G6156-MONOMER (aldehyde ferredoxin oxidoreductase, FAD-binding subunit)
   *in cand* 0.9995 0.9991 G6157 (yagT) G6157-MONOMER (aldehyde ferredoxin oxidoreductase, Fe-S subunit)
  Genes in candidate but not in this pathway or complex:
   *in cand* 0.9992 0.9987 G6154 (yagQ) G6154-MONOMER (conserved protein)
   *in cand* 0.9994 0.9988 G7485 (xdhA) G7485-MONOMER (xanthine dehydrogenase subunit with putative molybdenum cofactor-binding domain)
   *in cand* 0.9995 0.9991 G7487 (xdhC) G7487-MONOMER (putative xanthine dehydrogenase, Fe-S subunit)
   *in cand* 0.9993 0.9988 G7494 (yqeB) G7494-MONOMER (conserved protein with NAD(P)-binding Rossman fold)

- CPLX0-761 (xanthine dehydrogenase) (degree of match pw to cand: 0.667, degree of match cand to pw: 0.286, average score: 1.000)
  Genes in pathway or complex:
   *in cand* 0.9995 0.9991 G7487 (xdhC) G7487-MONOMER (putative xanthine dehydrogenase, Fe-S subunit)
             0.9990 0.9969 G7486 (xdhB) G7486-MONOMER (putative xanthine dehydrogenase subunit, FAD-binding domain)
   *in cand* 0.9994 0.9988 G7485 (xdhA) G7485-MONOMER (xanthine dehydrogenase subunit with putative molybdenum cofactor-binding domain)
  Genes in candidate but not in this pathway or complex:
   *in cand* 0.9992 0.9987 G6154 (yagQ) G6154-MONOMER (conserved protein)
   *in cand* 0.9996 0.9990 G6155 (yagR) G6155-MONOMER (aldehyde ferredoxin oxidoreductase: molybdenum cofactor-binding subunit)
   *in cand* 0.9994 0.9987 G6156 (yagS) G6156-MONOMER (aldehyde ferredoxin oxidoreductase, FAD-binding subunit)
   *in cand* 0.9995 0.9991 G6157 (yagT) G6157-MONOMER (aldehyde ferredoxin oxidoreductase, Fe-S subunit)
   *in cand* 0.9993 0.9988 G7494 (yqeB) G7494-MONOMER (conserved protein with NAD(P)-binding Rossman fold)



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GENOME CONTEXT INFORMATION:

Each row corresponds to a replicon in an organism, each column to a gene in the candidate. The second column indicates whether the organims was included in the list used to compute the genome context scores or not. Some organisms are not included because they are phylogenetically too similar to others already in the list.
The number in the matrix indicate the position of the homolog of the gene in the replicon. All numbers are relative to the smaller one, which is assigned a position of zero. Two columns with the same number indicate that the two genes matched the same gene in that organism.

Genome browser links for gene clusters

The links below opens a genome browser BioCyc page for each cluster of genes in the target genome. These pages shows the central gene of the cluster in the target genome and its best homolog in the reference genomes, for the genomes that contain homologs for at least 75% of the genes in the group. Only one genome per phylogenetic cluster of organisms is shown, to keep the list smaller.

G7485 G7487 (centered at G7487)
G7494 (centered at G7494)
G6154 G6155 G6156 G6157 (centered at G6156)


ORG:REPLICON:CIRC?\GENE  IN REF LIST  G7494   G7487   G7485   G6157   G6156   G6155   G6154   
237/623198/623190/623179/623146/623181/623180/623
AAUR290340:2:Tyes144514431443--01445
AAVE397945:0:Tyes28292746028323543532829
ABAC204669:0:Tyes18981176-2364101898
ABAU360910:0:Tyes1828115211511152115311510
ACAU438753:0:Tyes0190936223513503491900
ACEL351607:0:Tyes061167110
ACRY349163:8:Tyes03714993736350
ADEH290397:0:Tyes2791---0-2791
AEHR187272:0:Tyes358010---
AFER243159:0:Tyes303435021-
AHYD196024:0:Tyes01210-1110-
AMAR329726:9:Tyes0------
AMET293826:0:Tyes40544061040612072094055
AORE350688:0:Tyes16094984990497499-
APER272557:0:Tyes158315691572156915750-
ASP1667:3:Tyes1406714047814040
ASP232721:2:Tyes0-1903----
ASP62928:0:Tyes202239---2
ASP62977:0:Tyes0------
ASP76114:2:Tyes0892891892890891889
AVAR240292:1:Tyes0313210
BAMB339670:1:Tno--0----
BAMB339670:3:Tno1032-210103
BAMB398577:1:Tno--0----
BAMB398577:3:Tno1062-210106
BAMY326423:0:Tyes402--2-
BBAC264462:0:Tyes0------
BBRO257310:0:Tyes2046121022046
BCAN483179:1:Tno1-0----
BCEN331271:2:Tno10220210102
BCEN331272:3:Tyes10420210104
BCER226900:1:Tyes0-3----
BCLA66692:0:Tyes4010-1-
BHAL272558:0:Tyes1249101-01249
BJAP224911:0:Fyes4600961012461
BMAL243160:0:Tno---0---
BMAL243160:1:Tno0-----0
BMAL320388:1:Tno0-----0
BMAL320389:0:Tyes---0---
BMAL320389:1:Tyes0-----0
BMEL224914:1:Tno0------
BOVI236:1:Tyes0------
BPAR257311:0:Tno9211-10-921
BPER257313:0:Tyes1283010-11283
BPET94624:0:Tyes01495-1495149414930
BPSE272560:0:Tyes---0---
BPSE272560:1:Tyes0-----0
BPSE320372:0:Tno---0---
BPSE320372:1:Tno0-----0
BPSE320373:0:Tno---0---
BPSE320373:1:Tno0-----0
BSP36773:1:Tyes---0---
BSP36773:2:Tyes2525-0--5612525
BSP376:0:Tyes3526468001081108210831060
BSUB:0:Tyes4010-1-
BSUI204722:1:Tyes--0----
BSUI470137:1:Tno1-0----
BTHA271848:0:Tno---0---
BTHA271848:1:Tno0-1191---0
BVIE269482:7:Tyes2351225102251225022492351
BXEN266265:0:Tyes0----1123-
BXEN266265:1:Tyes-23990304303--
CAULO:0:Tyes36070----3607
CBEI290402:0:Tyes052----
CBOT36826:1:Tno1601202-0-
CBOT441770:0:Tyes1516202-0-
CBOT441771:0:Tno1439202-0-
CBOT441772:1:Tno154120--0-
CBOT498213:1:Tno162120--0-
CBOT508765:1:Tyes8202-0-
CBOT515621:2:Tyes1785202-0-
CBOT536232:0:Tno179220--0-
CDIF272563:1:Tyes1938540525540-5510
CHYD246194:0:Tyes4010-1-
CJAP155077:0:Tyes0------
CMIC31964:2:Tyes022--20
CMIC443906:2:Tyes200--02
CPHY357809:0:Tyes0930--30-
CPSY167879:0:Tyes4461-44600---
CSAL290398:0:Tyes1284020124
CSP501479:4:Fyes---0-2-
CSP501479:5:Fyes-0--1--
CSP501479:8:Fyes0-855---0
CSP78:2:Tyes36851359-3573-13600
CTET212717:0:Tyes0-546----
CVIO243365:0:Tyes0-----0
DARO159087:0:Tyes20-0---
DDES207559:0:Tyes700--07
DGEO319795:0:Tyes0----1-
DGEO319795:1:Tyes-1554-15541552-0
DHAF138119:0:Tyes5011460211139
DPSY177439:2:Tyes1659232823272328150923270
DRAD243230:2:Tyes01019799989749
DRED349161:0:Tyes0247412001199-12001
DSHI398580:0:Tyes-12-0--
DSHI398580:5:Tyes0--1463-17631154
DVUL882:1:Tyes077--7-
ECOL199310:0:Tno920-109
ECOL316407:0:Tno2595258825863210
ECOL331111:6:Tno2784277727753210
ECOL362663:0:Tno920-109
ECOL364106:1:Tno920-109
ECOL405955:2:Tyes8-0-108
ECOL409438:6:Tyes2890288328813210
ECOL413997:0:Tno2478247124693210
ECOL439855:4:Tno920-109
ECOL469008:0:Tno0792493249424952496
ECOL481805:0:Tno0792510251125122513
ECOL585034:0:Tno2680267326713210
ECOL585035:0:Tno920-109
ECOL585055:0:Tno2843283628343210
ECOL585056:2:Tno292229152913-210
ECOL585057:0:Tno920--09
ECOL585397:0:Tno920-109
ECOL83334:0:Tno3515350835063210
ECOLI:0:Tno2651264426423210
ECOO157:0:Tno3532352535233210
EFAE226185:3:Tyes077---8
EFER585054:1:Tyes3-20123
ELIT314225:0:Tyes21970-2200-21992197
FALN326424:0:Tyes0229722982297-22960
FJOH376686:0:Tyes52-2105
FMAG334413:1:Tyes93-0--0-
FSP106370:0:Tyes15530---11553
FSP1855:0:Tyes2944146420146514533
GBET391165:0:Tyes0-----0
GFOR411154:0:Tyes7020127
GKAU235909:0:Tyes50-01-5
GKAU235909:1:Tyes--0----
GMET269799:1:Tyes412102-
GOXY290633:5:Tyes0103620310361035-0
GSUL243231:0:Tyes0------
GTHE420246:1:Tyes402----
GURA351605:0:Tyes7-00--7
HARS204773:0:Tyes20-0--2
HCHE349521:0:Tyes0--3788-1475
HMAR272569:7:Tyes0565-60
HMOD498761:0:Tyes08108910-
HNEP81032:0:Tyes0313210
HWAL362976:1:Tyes-2-21-0
JSP290400:1:Tyes33621208340121040
JSP375286:0:Tyes265277275267-0265
KRAD266940:2:Fyes011--10
LCHO395495:0:Tyes02771-444--0
MABS561007:1:Tyes0-1--10
MAQU351348:2:Tyes4650-0---
MBOV233413:0:Tno31012-3
MBOV410289:0:Tno31012-3
MEXT419610:0:Tyes2340910284028412842233
MFLA265072:0:Tyes0--2--0
MGIL350054:3:Tyes1292128812910121292
MHUN323259:0:Tyes0------
MLOT266835:2:Tyes1172237301447144814490
MMAG342108:0:Tyes0203211702032117111701172
MPET420662:1:Tyes482--0--482
MSED399549:0:Tyes10731013100-
MSME246196:0:Tyes59515360621059
MSP164756:1:Tno5141915421051
MSP164757:0:Tno5345595621053
MSP189918:2:Tyes5242625521052
MSP266779:1:Tyes--0----
MSP266779:3:Tyes12470-5265255241247
MSP400668:0:Tyes0---2--
MSP409:2:Tyes3082226415950124963
MTBCDC:0:Tno-10120-
MTBRV:0:Tno3101203
MTHE264732:0:Tyes4202313945
MTUB336982:0:Tno3101203
MTUB419947:0:Tyes3101203
MVAN350058:0:Tyes3100310431991203100
MXAN246197:0:Tyes0--1629--2876
NARO279238:0:Tyes-1614-2--0
NFAR247156:2:Tyes0-511--5110
NHAM323097:2:Tyes152203910121523
NSP35761:1:Tyes391403913930124740383739
NWIN323098:0:Tyes11341139011391138-1135
OANT439375:5:Tyes--0--0-
OCAR504832:0:Tyes01331311331321310
PAER178306:0:Tyes5424100-4100-
PAER208963:0:Tyes4312-2101795
PAER208964:0:Tno0414-4144154163137
PARS340102:0:Tyes017401739--1739-
PATL342610:0:Tyes0--185--93
PCAR338963:0:Tyes7--0--7
PCRY335284:1:Tyes6616640664663662661
PENT384676:0:Tyes0-----393
PFLU205922:0:Tyes03253233253243232394
PFLU216595:1:Tyes17320732731730120
PFLU220664:0:Tyes101-----0
PING357804:0:Tyes---0---
PISL384616:0:Tyes-30-40-
PMEN399739:0:Tyes41624152102165
PMOB403833:0:Tyes2307-02
PNAP365044:8:Tyes2000-02
PPRO298386:2:Tyes5280--0-
PPUT160488:0:Tno9610-012908
PPUT351746:0:Tyes0834-83483383246
PPUT76869:0:Tno15481285-1285--0
PSP296591:2:Tyes0628096450
PSP312153:0:Tyes0269----0
PSP56811:2:Tyes3020123
PSTU379731:0:Tyes0221452340
PSYR205918:0:Tyes02484-24842483576577
PSYR223283:2:Tyes98519672011992002010
PTHE370438:0:Tyes8799248839248858830
PTOR263820:0:Tyes3930-----
RCAS383372:0:Tyes40123101203101401
RDEN375451:3:Tyes-----0-
RDEN375451:4:Tyes1350134801348--1350
RETL347834:5:Tyes1-0----
REUT264198:1:Tyes0-----0
REUT264198:2:Tyes-0-905906907-
REUT264198:3:Tyes--0----
REUT381666:1:Tyes-0-113611371138-
REUT381666:2:Tyes0-2857---0
RFER338969:1:Tyes2--0--2
RLEG216596:0:Tyes-01----
RLEG216596:5:Tyes0--3210
RMET266264:2:Tyes06564-0
RPAL258594:0:Tyes3989013150213146
RPAL316055:0:Tyes3745226013941026011061
RPAL316056:0:Tyes330610117116115624
RPAL316057:0:Tyes146615614210877
RPAL316058:0:Tyes0347334763571357035692733
RPOM246200:0:Tyes-0---1-
RPOM246200:1:Tyes1531-015351536-1768
RRUB269796:1:Tyes61-1320
RSOL267608:1:Tyes06-64-0
RSP101510:3:Fyes3348482548610125077
RSP357808:0:Tyes1550208602793155
RSPH272943:3:Tyes--2012-
RSPH272943:4:Tyes0966----0
RSPH349101:1:Tno--2012-
RSPH349101:2:Tno0942----0
RSPH349102:4:Tyes--713012-
RSPH349102:5:Tyes0806----0
RXYL266117:0:Tyes0270727091755175317540
SACI330779:0:Tyes102130413050130390-
SACI56780:0:Tyes0------
SARE391037:0:Tyes0313210
SAVE227882:1:Fyes036565344593359346056
SBOY300268:1:Tyes079-890
SCO:2:Fyes4382272227144104395537
SDEG203122:0:Tyes0142-142--0
SERY405948:0:Tyes034374286388338843885709
SFLE198214:0:Tyes-20--0-
SFLE373384:0:Tno-20-10-
SFUM335543:0:Tyes0686687117911811180-
SHAL458817:0:Tyes0-12--12-
SHIGELLA:0:Tno-20--0-
SLAC55218:1:Fyes2885273031882742722885
SMAR399550:0:Tyes0322323322-323-
SMED366394:1:Tyes---1-0-
SMED366394:2:Tyes-10-720--
SMED366394:3:Tyes0-----0
SMEL266834:0:Tyes---012-
SMEL266834:1:Tyes-01----
SMEL266834:2:Tyes0-----0
SPRO399741:1:Tyes1191013-01739
SSOL273057:0:Tyes010411222104112201793-
SSON300269:1:Tyes820--0-
SSP292414:1:Tyes---0---
SSP292414:2:Tyes012891227--12881291
SSP321332:0:Tyes0------
SSP644076:4:Fyes---0---
SSP644076:6:Fyes--0----
SSP644076:7:Fyes651654---0651
STHE292459:0:Tyes0------
STOK273063:0:Tyes05061835183618372420-
SWOL335541:0:Tyes0172817271728-1727-
TFUS269800:0:Tyes----0--
TROS309801:0:Tyes1677070707497331-
TROS309801:1:Tyes------0
TTUR377629:0:Tyes02368123682-642
VEIS391735:1:Tyes010458108-0
XAUT78245:1:Tyes011671167409952011673796
XAXO190486:0:Tyes1702017041706170517041703
XCAM190485:0:Tyes1633016341636163516341633
XCAM314565:0:Tno3177320124093
XCAM316273:0:Tno1752017531755175417531752
XCAM487884:0:Tno3183820123



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