CANDIDATE ID: 262

NUMBER OF GENES: 7
AVERAGE SCORE:    9.9901829e-1 (range=[0.0,1.0])
AVERAGE MINIMUM BLAST P-VAL:    4.2857143e-1

Gene List
List of organisms containing most genes from the group
    Phylogenetic tree highlighting these organisms (opens new page)
List of organisms containing very few or no genes from the group
List of organisms enriched for group
List of organisms depleted for group
Phylogenetic profile similarity with known pathways
Pairwise genome context scores
Pairwise Blast scores
Pathway or protein complex matches in target organism
Genome context matrix
    Genes and their orthologs in genome browser BioCyc pages

GENE LIST:

- G7859 (ulaE) (b4197)
   Products of gene:
     - G7859-MONOMER (L-xylulose 5-phosphate 3-epimerase)
       Reactions:
        L-xylulose-5-phosphate  ->  L-ribulose-5-phosphate
         In pathways
         PWY-5257 (PWY-5257)
         PWY0-301 (L-ascorbate degradation, anaerobic)
         LYXMET-PWY (L-lyxose degradation)

- G7858 (ulaD) (b4196)
   Products of gene:
     - G7858-MONOMER (3-keto-L-gulonate 6-phosphate decarboxylase)
     - CPLX0-7744 (3-keto-L-gulonate 6-phosphate decarboxylase)
       Reactions:
        3-keto-L-gulonate 6-phosphate + H+  ->  L-xylulose-5-phosphate + CO2
         In pathways
         PWY0-301 (L-ascorbate degradation, anaerobic)

- G7856 (ulaA) (b4193)
   Products of gene:
     - SGAT-MONOMER (UlaA)
     - EIISGA (L-ascorbate transporting phosphotransferase system)
       Reactions:
        phosphoenolpyruvate + L-ascorbate-6-phosphate[periplasmic space]  ->  L-ascorbate-6-phosphate[cytosol] + pyruvate

- EG12495 (ulaC) (b4195)
   Products of gene:
     - YJFU-MONOMER (UlaC)
     - EIISGA (L-ascorbate transporting phosphotransferase system)
       Reactions:
        phosphoenolpyruvate + L-ascorbate-6-phosphate[periplasmic space]  ->  L-ascorbate-6-phosphate[cytosol] + pyruvate

- EG12494 (ulaB) (b4194)
   Products of gene:
     - YJFT-MONOMER (UlaB)
     - EIISGA (L-ascorbate transporting phosphotransferase system)
       Reactions:
        phosphoenolpyruvate + L-ascorbate-6-phosphate[periplasmic space]  ->  L-ascorbate-6-phosphate[cytosol] + pyruvate

- EG12286 (sgbU) (b3582)
   Products of gene:
     - EG12286-MONOMER (predicted L-xylulose 5-phosphate 3-epimerase)
       Reactions:
        L-xylulose-5-phosphate  ->  L-ribulose-5-phosphate
         In pathways
         PWY-5257 (PWY-5257)
         PWY0-301 (L-ascorbate degradation, anaerobic)
         LYXMET-PWY (L-lyxose degradation)

- EG12285 (sgbH) (b3581)
   Products of gene:
     - EG12285-MONOMER (3-keto-L-gulonate 6-phosphate decarboxylase)
       Reactions:
        3-keto-L-gulonate 6-phosphate + H+  ->  L-xylulose-5-phosphate + CO2
         In pathways
         PWY0-301 (L-ascorbate degradation, anaerobic)

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ORGANISMS CONTAINING AT LEAST 6 GENES FROM THE GROUP:

Total number of orgs: 79
Effective number of orgs (counting one per cluster within 468 clusters): 35

Organism list
Homologs in each organism in the list
Features enriched in organism list

Follow (ncbi) link, when present, to find the set of organism features for each organism

Org ID	Org Name	# genes in group found in org
VVUL216895 ncbi	Vibrio vulnificus CMCP6	7
VVUL196600 ncbi	Vibrio vulnificus YJ016	7
VCHO345073 ncbi	Vibrio cholerae O395	7
VCHO ncbi	Vibrio cholerae O1 biovar El Tor str. N16961	7
STYP99287 ncbi	Salmonella enterica enterica serovar Typhimurium str. LT2	7
SSUI391296 ncbi	Streptococcus suis 98HAH33	7
SSUI391295 ncbi	Streptococcus suis 05ZYH33	7
SSON300269 ncbi	Shigella sonnei Ss046	6
SPYO370554 ncbi	Streptococcus pyogenes MGAS10750	7
SPYO370553 ncbi	Streptococcus pyogenes MGAS2096	7
SPYO370552 ncbi	Streptococcus pyogenes MGAS10270	7
SPYO370551 ncbi	Streptococcus pyogenes MGAS9429	7
SPYO319701 ncbi	Streptococcus pyogenes MGAS6180	7
SPYO293653 ncbi	Streptococcus pyogenes MGAS5005	7
SPYO286636 ncbi	Streptococcus pyogenes MGAS10394	7
SPYO198466 ncbi	Streptococcus pyogenes MGAS315	7
SPYO193567 ncbi	Streptococcus pyogenes SSI-1	7
SPYO186103 ncbi	Streptococcus pyogenes MGAS8232	7
SPYO160490 ncbi	Streptococcus pyogenes M1 GAS	7
SPRO399741 ncbi	Serratia proteamaculans 568	6
SPNE488221 ncbi	Streptococcus pneumoniae 70585	7
SPNE487214 ncbi	Streptococcus pneumoniae Hungary19A-6	7
SPNE487213 ncbi	Streptococcus pneumoniae Taiwan19F-14	7
SPNE171101 ncbi	Streptococcus pneumoniae R6	7
SPNE170187 ncbi	Streptococcus pneumoniae G54	7
SPNE1313	Streptococcus pneumoniae	7
SMUT210007 ncbi	Streptococcus mutans UA159	7
SHIGELLA ncbi	Shigella flexneri 2a str. 2457T	7
SFLE373384 ncbi	Shigella flexneri 5 str. 8401	7
SFLE198214 ncbi	Shigella flexneri 2a str. 301	7
SENT454169 ncbi	Salmonella enterica enterica serovar Heidelberg str. SL476	7
SENT321314 ncbi	Salmonella enterica enterica serovar Choleraesuis str. SC-B67	7
SENT295319 ncbi	Salmonella enterica enterica serovar Paratyphi A str. ATCC 9150	7
SENT220341 ncbi	Salmonella enterica enterica serovar Typhi str. CT18	7
SENT209261 ncbi	Salmonella enterica enterica serovar Typhi str. Ty2	7
SBOY300268 ncbi	Shigella boydii Sb227	7
SAGA211110 ncbi	Streptococcus agalactiae NEM316	7
SAGA208435 ncbi	Streptococcus agalactiae 2603V/R	7
SAGA205921 ncbi	Streptococcus agalactiae A909	7
PPRO298386 ncbi	Photobacterium profundum SS9	7
PMUL272843 ncbi	Pasteurella multocida multocida Pm70	7
PACN267747 ncbi	Propionibacterium acnes KPA171202	6
OIHE221109 ncbi	Oceanobacillus iheyensis HTE831	7
MSYN262723 ncbi	Mycoplasma synoviae 53	7
MSUC221988 ncbi	Mannheimia succiniciproducens MBEL55E	7
MPUL272635 ncbi	Mycoplasma pulmonis UAB CTIP	7
MPNE272634 ncbi	Mycoplasma pneumoniae M129	7
MPEN272633 ncbi	Mycoplasma penetrans HF-2	7
MHYO295358 ncbi	Mycoplasma hyopneumoniae 232	7
MHYO262722 ncbi	Mycoplasma hyopneumoniae 7448	7
MHYO262719 ncbi	Mycoplasma hyopneumoniae J	7
LMES203120 ncbi	Leuconostoc mesenteroides mesenteroides ATCC 8293	6
LCAS321967 ncbi	Lactobacillus casei ATCC 334	6
KPNE272620 ncbi	Klebsiella pneumoniae pneumoniae MGH 78578	7
HDUC233412 ncbi	Haemophilus ducreyi 35000HP	7
EFER585054 ncbi	Escherichia fergusonii ATCC 35469	7
EFAE226185 ncbi	Enterococcus faecalis V583	7
ECOO157 ncbi	Escherichia coli O157:H7 EDL933	7
ECOL83334	Escherichia coli O157:H7	7
ECOL585397 ncbi	Escherichia coli ED1a	7
ECOL585057 ncbi	Escherichia coli IAI39	7
ECOL585056 ncbi	Escherichia coli UMN026	7
ECOL585055 ncbi	Escherichia coli 55989	7
ECOL585035 ncbi	Escherichia coli S88	7
ECOL585034 ncbi	Escherichia coli IAI1	7
ECOL481805 ncbi	Escherichia coli ATCC 8739	7
ECOL469008 ncbi	Escherichia coli BL21(DE3)	7
ECOL439855 ncbi	Escherichia coli SMS-3-5	7
ECOL413997 ncbi	Escherichia coli B str. REL606	7
ECOL409438 ncbi	Escherichia coli SE11	7
ECOL405955 ncbi	Escherichia coli APEC O1	6
ECOL364106 ncbi	Escherichia coli UTI89	7
ECOL362663 ncbi	Escherichia coli 536	7
ECOL331111 ncbi	Escherichia coli E24377A	7
ECOL316407 ncbi	Escherichia coli K-12 substr. W3110	7
ECOL199310 ncbi	Escherichia coli CFT073	7
BCLA66692 ncbi	Bacillus clausii KSM-K16	7
APLE434271 ncbi	Actinobacillus pleuropneumoniae serovar 3 str. JL03	7
APLE416269 ncbi	Actinobacillus pleuropneumoniae L20	7

Names of the homologs of the genes in the group in each of these orgs

	G7859	G7858	G7856	EG12495	EG12494	EG12286	EG12285
VVUL216895	VV2_1085	VV2_1084	VV2_1080	VV2_1081	VV2_1080	VV2_1085	VV2_1084
VVUL196600	VVA1609	VVA1608	VVA1604	VVA1605	VVA1604	VVA1609	VVA1608
VCHO345073	VC0395_0988	VC0395_0987	VC0395_0983	VC0395_0984	VC0395_0983	VC0395_0988	VC0395_0987
VCHO	VCA0241	VCA0242	VCA0246	VCA0245	VCA0246	VCA0241	VCA0242
STYP99287	STM4387	STM4386	STM4383	STM4385	STM4384	STM3676	STM3675
SSUI391296	SSU98_2062	SSU98_2063	SSU98_2066	SSU98_2064	SSU98_2065	SSU98_2062	SSU98_2063
SSUI391295	SSU05_2059	SSU05_2060	SSU05_2063	SSU05_2061	SSU05_2062	SSU05_2059	SSU05_2060
SSON300269	SSO_4379	SSO_4378		SSO_4377	SSO_4376	SSO_4379	SSO_4378
SPYO370554	MGAS10750_SPY0158	MGAS10750_SPY0157	MGAS10750_SPY0154	MGAS10750_SPY0156	MGAS10750_SPY0155	MGAS10750_SPY0158	MGAS10750_SPY0157
SPYO370553	MGAS2096_SPY0160	MGAS2096_SPY0159	MGAS2096_SPY0156	MGAS2096_SPY0158	MGAS2096_SPY0157	MGAS2096_SPY0160	MGAS2096_SPY0159
SPYO370552	MGAS10270_SPY0154	MGAS10270_SPY0153	MGAS10270_SPY0150	MGAS10270_SPY0152	MGAS10270_SPY0151	MGAS10270_SPY0154	MGAS10270_SPY0153
SPYO370551	MGAS9429_SPY0154	MGAS9429_SPY0153	MGAS9429_SPY0150	MGAS9429_SPY0152	MGAS9429_SPY0151	MGAS9429_SPY0154	MGAS9429_SPY0153
SPYO319701	M28_SPY0150	M28_SPY0149	M28_SPY0146	M28_SPY0148	M28_SPY0147	M28_SPY0150	M28_SPY0149
SPYO293653	M5005_SPY0152	M5005_SPY0151	M5005_SPY0148	M5005_SPY0150	M5005_SPY0149	M5005_SPY0152	M5005_SPY0151
SPYO286636	M6_SPY0198	M6_SPY0197	M6_SPY0194	M6_SPY0196	M6_SPY0195	M6_SPY0198	M6_SPY0197
SPYO198466	SPYM3_0139	SPYM3_0138	SPYM3_0135	SPYM3_0137	SPYM3_0136	SPYM3_0139	SPYM3_0138
SPYO193567	SPS0142	SPS0141	SPS0138	SPS0140	SPS0139	SPS0142	SPS0141
SPYO186103	SPYM18_0177	SPYM18_0176	SPYM18_0173	SPYM18_0175	SPYM18_0174	SPYM18_0177	SPYM18_0176
SPYO160490	SPY0178	SPY0177	SPY0174	SPY0176	SPY0175	SPY0178	SPY0177
SPRO399741	SPRO_3938	SPRO_3937	SPRO_2256	SPRO_2253		SPRO_3938	SPRO_3937
SPNE488221	SP70585_2120	SP70585_2121	SP70585_2124	SP70585_2122	SP70585_2123	SP70585_2120	SP70585_2121
SPNE487214	SPH_2187	SPH_2188	SPH_2191	SPH_2189	SPH_2190	SPH_2187	SPH_2188
SPNE487213	SPT_2029	SPT_2030	SPT_2033	SPT_2031	SPT_2032	SPT_2029	SPT_2030
SPNE171101	SPR1845	SPR1846	SPR1849	SPR1847	SPR1848	SPR1845	SPR1846
SPNE170187	SPN20051	SPN20050	SPN20046	SPN20049	SPN20047	SPN20051	SPN20050
SPNE1313	SPJ_2040	SPJ_2041	SPJ_2044	SPJ_2042	SPJ_2043	SPJ_2040	SPJ_2041
SMUT210007	SMU_274	SMU_273	SMU_270	SMU_272	SMU_271	SMU_274	SMU_273
SHIGELLA	SGAU	SGAH	SGAT	PTXA	SGAB	SGAU	SGAH
SFLE373384	SFV_4353	SFV_4352	SFV_4349	SFV_4351	SFV_4350	SFV_3957	SFV_3958
SFLE198214	AAN45769.1	AAN45768.1	AAN45765.1	AAN45767.1	AAN45766.1	AAN45769.1	AAN45768.1
SENT454169	SEHA_C4805	SEHA_C4804	SEHA_C4801	SEHA_C4803	SEHA_C4802	SEHA_C3999	SEHA_C3998
SENT321314	SCH_4261	SCH_4260	SCH_4257	SCH_4259	SCH_4258	SCH_3602	SCH_3601
SENT295319	SPA4204	SPA4203	SPA4200	SPA4202	SPA4201	SPA3527	SPA3526
SENT220341	STY4743	STY4742	STY4739	STY4741	STY4740	STY4120	STY4121
SENT209261	T4438	T4437	T4434	T4436	T4435	T3843	T3844
SBOY300268	SBO_4258	SBO_4259	SBO_4262	SBO_4260	SBO_4261	SBO_4258	SBO_4259
SAGA211110	GBS1852	GBS1853	GBS1856	GBS1854	GBS1855	GBS1852	GBS1853
SAGA208435	SAG_1811	SAG_1812	SAG_1815	SAG_1813	SAG_1814	SAG_1811	SAG_1812
SAGA205921	SAK_1831	SAK_1832	SAK_1835	SAK_1833	SAK_1834	SAK_1831	SAK_1832
PPRO298386	PBPRB0269	PBPRB0276	PBPRB0273	PBPRB0274	PBPRB0273	PBPRB0269	PBPRB0276
PMUL272843	PM1245	PM1246	PM0764	PM0765	PM0764	PM1245	PM1246
PACN267747	PPA0881	PPA0880	PPA0446	PPA0447		PPA0881	PPA0880
OIHE221109	OB3400	OB2806	OB3414	OB3416	OB3415	OB3419	OB2806
MSYN262723	MS53_0030	MS53_0029	MS53_0026	MS53_0028	MS53_0682	MS53_0030	MS53_0029
MSUC221988	MS0047	MS0056	MS0022	MS0021	MS0022	MS0047	MS0020
MPUL272635	MYPU_5980	MYPU_5970	MYPU_5940	MYPU_5960	MYPU_5950	MYPU_5980	MYPU_5970
MPNE272634	MPN492	MPN493	MPN496	MPN494	MPN495	MPN492	MPN493
MPEN272633	MYPE7170	MYPE7180	MYPE7220	MYPE7190	MYPE7200	MYPE7170	MYPE7180
MHYO295358	MHP440	MHP441	MHP388	MHP386	MHP387	MHP440	MHP441
MHYO262722	MHP7448_0437	MHP7448_0438	MHP7448_0376	MHP7448_0374	MHP7448_0375	MHP7448_0437	MHP7448_0438
MHYO262719	MHJ_0435	MHJ_0436	MHJ_0372	MHJ_0370	MHJ_0371	MHJ_0435	MHJ_0436
LMES203120	LEUM_1993	LEUM_1994	LEUM_1996	LEUM_1997		LEUM_1993	LEUM_1994
LCAS321967	LSEI_2733	LSEI_2735	LSEI_2737	LSEI_0324		LSEI_2733	LSEI_2735
KPNE272620	GKPORF_B3950	GKPORF_B3949	GKPORF_B3946	GKPORF_B3948	GKPORF_B3947	GKPORF_B3297	GKPORF_B3296
HDUC233412	HD_1864	HD_1857	HD_1860	HD_1859	HD_1860	HD_1864	HD_1857
EFER585054	EFER_4250	EFER_4249	EFER_4246	EFER_4248	EFER_4247	EFER_3580	EFER_3579
EFAE226185	EF_1130	EF_1129	EF_1127	EF_2966	EF_1128	EF_1130	EF_1129
ECOO157	SGAU	SGAH	SGAT	PTXA	SGAB	SGAU	SGAH
ECOL83334	ECS5173	ECS5172	ECS5169	ECS5171	ECS5170	ECS5173	ECS5172
ECOL585397	ECED1_5047	ECED1_4983	ECED1_4980	ECED1_4982	ECED1_4981	ECED1_4271	ECED1_4270
ECOL585057	ECIAI39_4662	ECIAI39_4661	ECIAI39_4658	ECIAI39_4660	ECIAI39_4659	ECIAI39_4094	ECIAI39_4093
ECOL585056	ECUMN_4730	ECUMN_4729	ECUMN_4726	ECUMN_4728	ECUMN_4727	ECUMN_4095	ECUMN_4094
ECOL585055	EC55989_4754	EC55989_4753	EC55989_4750	EC55989_4752	EC55989_4751	EC55989_4039	EC55989_4038
ECOL585035	ECS88_4783	ECS88_4782	ECS88_4779	ECS88_4781	ECS88_4780	ECS88_4002	ECS88_4001
ECOL585034	ECIAI1_4430	ECIAI1_4429	ECIAI1_4426	ECIAI1_4428	ECIAI1_4427	ECIAI1_3749	ECIAI1_3748
ECOL481805	ECOLC_3816	ECOLC_3817	ECOLC_3820	ECOLC_3818	ECOLC_3819	ECOLC_0132	ECOLC_0133
ECOL469008	ECBD_3837	ECBD_3838	ECBD_3841	ECBD_3839	ECBD_3840	ECBD_0152	ECBD_0153
ECOL439855	ECSMS35_4668	ECSMS35_4667	ECSMS35_4664	ECSMS35_4666	ECSMS35_4665	ECSMS35_3905	ECSMS35_3904
ECOL413997	ECB_04064	ECB_04063	ECB_04060	ECB_04062	ECB_04061	ECB_03434	ECB_03433
ECOL409438	ECSE_4495	ECSE_4494	ECSE_4491	ECSE_4493	ECSE_4492	ECSE_3858	ECSE_3857
ECOL405955	APECO1_2195	APECO1_2196	APECO1_2199	APECO1_3596		APECO1_2868	APECO1_2869
ECOL364106	UTI89_C4797	UTI89_C4796	UTI89_C4793	UTI89_C4795	UTI89_C4794	UTI89_C4126	UTI89_C4125
ECOL362663	ECP_4442	ECP_4441	ECP_4438	ECP_4440	ECP_4439	ECP_3687	ECP_3686
ECOL331111	ECE24377A_4758	ECE24377A_4757	ECE24377A_4753	ECE24377A_4755	ECE24377A_4754	ECE24377A_4079	ECE24377A_4078
ECOL316407	ECK4193:JW4155:B4197	ECK4192:JW4154:B4196	ECK4189:JW5744:B4193	ECK4191:JW4153:B4195	ECK4190:JW4152:B4194	ECK3571:JW5650:B3582	ECK3570:JW3553:B3581
ECOL199310	C5287	C5285	C5281	C5284	C5283	C4405	C4404
BCLA66692	ABC3437	ABC3351	ABC0947	ABC0884	ABC0946	ABC3437	ABC3351
APLE434271	APJL_1735	APJL_1730	APJL_1732	APJL_1731	APJL_1732	APJL_1735	APJL_1730
APLE416269	APL_1703	APL_1698	APL_1700	APL_1699	APL_1700	APL_1703	APL_1698

Organism features enriched in list (features available for 77 out of the 79 orgs in the list)

Feature	Pvalue	Num occurrences in list	Total num occurrences
Arrangment:Chains	2.425e-7	29	92
Arrangment:Pairs	0.0001961	27	112
Disease:Dysentery	0.0001881	5	6
Disease:Gastroenteritis	0.0030378	6	13
Disease:None	0.0081334	2	58
Disease:Urinary_tract_infection	0.0002841	4	4
Disease:Wide_range_of_infections	1.109e-10	11	11
Disease:endocarditis	0.0077693	3	4
Disease:pneumonia	0.0002269	7	12
Endospores:No	0.0000308	44	211
GC_Content_Range4:40-60	0.0000259	46	224
GC_Content_Range7:50-60	1.749e-7	32	107
Genome_Size_Range5:4-6	0.0005104	37	184
Genome_Size_Range5:6-10	0.0074893	1	47
Genome_Size_Range9:3-4	0.0007279	2	77
Habitat:Aquatic	0.0005558	3	91
Habitat:Host-associated	5.073e-7	47	206
Motility:No	0.0051682	29	151
Optimal_temp.:-	0.0047657	24	257
Optimal_temp.:20-30	0.0066307	4	7
Optimal_temp.:30-35	0.0000274	6	7
Optimal_temp.:37	6.867e-9	34	106
Oxygen_Req:Aerobic	5.527e-13	1	185
Oxygen_Req:Anaerobic	0.0001282	3	102
Oxygen_Req:Facultative	1.055e-31	72	201
Pathogenic_in:Human	1.960e-11	55	213
Pathogenic_in:No	4.804e-10	7	226
Pathogenic_in:Swine	0.0000358	5	5
Salinity:Non-halophilic	7.082e-6	29	106
Shape:Coccus	0.0000167	24	82
Shape:Sphere	0.0057493	7	19
Temp._range:Mesophilic	6.190e-6	75	473

ORGANISMS CONTAINING AT MOST 1 GENES FROM THE GROUP:

Total number of orgs: 414
Effective number of orgs (counting one per cluster within 468 clusters): 336

Organism list
Homologs in each organism in the list
Features enriched in organism list

Follow (ncbi) link, when present, to find the set of organism features for each organism

Org ID	Org Name	# genes in group found in org
ZMOB264203 ncbi	Zymomonas mobilis mobilis ZM4	0
XORY360094 ncbi	Xanthomonas oryzae pv. oryzae PXO99A	0
XORY342109 ncbi	Xanthomonas oryzae pv. oryzae MAFF 311018	0
XORY291331 ncbi	Xanthomonas oryzae pv. oryzae KACC10331	0
XFAS405440 ncbi	Xylella fastidiosa M12	0
XFAS183190 ncbi	Xylella fastidiosa Temecula1	0
XFAS160492 ncbi	Xylella fastidiosa 9a5c	0
XCAM487884	Xanthomonas campestris pv. paulliniae	0
XCAM316273 ncbi	Xanthomonas campestris pv. vesicatoria str. 85-10	0
XCAM314565 ncbi	Xanthomonas campestris pv. campestris str. 8004	0
XCAM190485 ncbi	Xanthomonas campestris pv. campestris str. ATCC 33913	0
XAXO190486 ncbi	Xanthomonas axonopodis pv. citri str. 306	0
XAUT78245 ncbi	Xanthobacter autotrophicus Py2	0
WSUC273121 ncbi	Wolinella succinogenes DSM 1740	0
WPIP955	Wolbachia pipientis	0
WPIP80849	Wolbachia endosymbiont of Brugia malayi	0
VEIS391735 ncbi	Verminephrobacter eiseniae EF01-2	0
UURE95667	Ureaplasma urealyticum serovar 13	0
UURE95664	Ureaplasma urealyticum serovar 10	0
UPAR505682 ncbi	Ureaplasma parvum serovar 3 str. ATCC 27815	0
TVOL273116 ncbi	Thermoplasma volcanium GSS1	0
TTUR377629 ncbi	Teredinibacter turnerae T7901	0
TTHE300852 ncbi	Thermus thermophilus HB8	0
TTHE262724 ncbi	Thermus thermophilus HB27	0
TSP28240	Thermotoga sp.	0
TROS309801 ncbi	Thermomicrobium roseum DSM 5159	0
TPET390874 ncbi	Thermotoga petrophila RKU-1	0
TPEN368408 ncbi	Thermofilum pendens Hrk 5	1
TPAL243276 ncbi	Treponema pallidum pallidum Nichols	0
TMAR243274 ncbi	Thermotoga maritima MSB8	0
TLET416591 ncbi	Thermotoga lettingae TMO	0
TFUS269800 ncbi	Thermobifida fusca YX	0
TERY203124 ncbi	Trichodesmium erythraeum IMS101	0
TELO197221 ncbi	Thermosynechococcus elongatus BP-1	0
TDEN326298 ncbi	Sulfurimonas denitrificans DSM 1251	0
TDEN292415 ncbi	Thiobacillus denitrificans ATCC 25259	0
TDEN243275 ncbi	Treponema denticola ATCC 35405	0
TCRU317025 ncbi	Thiomicrospira crunogena XCL-2	0
TACI273075 ncbi	Thermoplasma acidophilum DSM 1728	0
SWOL335541 ncbi	Syntrophomonas wolfei wolfei Goettingen	0
STRO369723 ncbi	Salinispora tropica CNB-440	0
STHE322159 ncbi	Streptococcus thermophilus LMD-9	0
STHE299768 ncbi	Streptococcus thermophilus CNRZ1066	0
STHE264199 ncbi	Streptococcus thermophilus LMG 18311	0
SSP94122 ncbi	Shewanella sp. ANA-3	0
SSP84588 ncbi	Synechococcus sp. WH 8102	0
SSP64471 ncbi	Synechococcus sp. CC9311	0
SSP644076	Silicibacter sp. TrichCH4B	0
SSP387093 ncbi	Sulfurovum sp. NBC37-1	0
SSP321332 ncbi	Synechococcus sp. JA-2-3Ba(2-13)	0
SSP321327 ncbi	Synechococcus sp. JA-3-3Ab	0
SSP292414 ncbi	Ruegeria sp. TM1040	0
SSP1148 ncbi	Synechocystis sp. PCC 6803	0
SSP1131	Synechococcus sp. CC9605	0
SSED425104 ncbi	Shewanella sediminis HAW-EB3	0
SRUB309807 ncbi	Salinibacter ruber DSM 13855	0
SPEA398579 ncbi	Shewanella pealeana ATCC 700345	0
SONE211586 ncbi	Shewanella oneidensis MR-1	0
SMEL266834 ncbi	Sinorhizobium meliloti 1021	0
SMED366394 ncbi	Sinorhizobium medicae WSM419	0
SMAR399550 ncbi	Staphylothermus marinus F1	1
SLOI323850 ncbi	Shewanella loihica PV-4	0
SLAC55218	Ruegeria lacuscaerulensis	0
SHAL458817 ncbi	Shewanella halifaxensis HAW-EB4	0
SGLO343509 ncbi	Sodalis glossinidius morsitans	1
SFUM335543 ncbi	Syntrophobacter fumaroxidans MPOB	1
SERY405948 ncbi	Saccharopolyspora erythraea NRRL 2338	1
SELO269084 ncbi	Synechococcus elongatus PCC 6301	0
SDEN318161 ncbi	Shewanella denitrificans OS217	0
SDEG203122 ncbi	Saccharophagus degradans 2-40	0
SBAL402882 ncbi	Shewanella baltica OS185	0
SBAL399599 ncbi	Shewanella baltica OS195	0
SAVE227882 ncbi	Streptomyces avermitilis MA-4680	0
SARE391037 ncbi	Salinispora arenicola CNS-205	0
SALA317655 ncbi	Sphingopyxis alaskensis RB2256	0
SACI56780 ncbi	Syntrophus aciditrophicus SB	0
RXYL266117 ncbi	Rubrobacter xylanophilus DSM 9941	0
RTYP257363 ncbi	Rickettsia typhi Wilmington	0
RSPH349102 ncbi	Rhodobacter sphaeroides ATCC 17025	0
RSPH349101 ncbi	Rhodobacter sphaeroides ATCC 17029	0
RSPH272943 ncbi	Rhodobacter sphaeroides 2.4.1	0
RSP357808 ncbi	Roseiflexus sp. RS-1	0
RSOL267608 ncbi	Ralstonia solanacearum GMI1000	0
RSAL288705 ncbi	Renibacterium salmoninarum ATCC 33209	0
RRUB269796 ncbi	Rhodospirillum rubrum ATCC 11170	0
RRIC452659 ncbi	Rickettsia rickettsii Iowa	0
RRIC392021 ncbi	Rickettsia rickettsii Sheila Smith	0
RPRO272947 ncbi	Rickettsia prowazekii Madrid E	0
RPOM246200 ncbi	Ruegeria pomeroyi DSS-3	0
RPAL316058 ncbi	Rhodopseudomonas palustris HaA2	0
RPAL316057 ncbi	Rhodopseudomonas palustris BisB5	0
RPAL316056 ncbi	Rhodopseudomonas palustris BisB18	0
RPAL316055 ncbi	Rhodopseudomonas palustris BisA53	0
RPAL258594 ncbi	Rhodopseudomonas palustris CGA009	0
RMET266264 ncbi	Ralstonia metallidurans CH34	0
RMAS416276 ncbi	Rickettsia massiliae MTU5	0
RLEG216596 ncbi	Rhizobium leguminosarum bv. viciae 3841	0
RFER338969 ncbi	Rhodoferax ferrireducens T118	0
RFEL315456 ncbi	Rickettsia felis URRWXCal2	0
REUT381666 ncbi	Ralstonia eutropha H16	0
REUT264198 ncbi	Ralstonia eutropha JMP134	0
RETL347834 ncbi	Rhizobium etli CFN 42	0
RDEN375451 ncbi	Roseobacter denitrificans OCh 114	0
RCON272944 ncbi	Rickettsia conorii Malish 7	0
RCAS383372 ncbi	Roseiflexus castenholzii DSM 13941	0
RCAN293613 ncbi	Rickettsia canadensis McKiel	0
RBEL391896 ncbi	Rickettsia bellii OSU 85-389	0
RBEL336407 ncbi	Rickettsia bellii RML369-C	0
RALB246199	Ruminococcus albus 8	0
RAKA293614 ncbi	Rickettsia akari Hartford	0
PTOR263820 ncbi	Picrophilus torridus DSM 9790	0
PTHE370438 ncbi	Pelotomaculum thermopropionicum SI	0
PSYR223283 ncbi	Pseudomonas syringae pv. tomato str. DC3000	0
PSYR205918 ncbi	Pseudomonas syringae pv. syringae B728a	0
PSTU379731 ncbi	Pseudomonas stutzeri A1501	0
PSP56811	Psychrobacter sp.	0
PSP312153 ncbi	Polynucleobacter necessarius asymbioticus QLW-P1DMWA-1	0
PSP296591 ncbi	Polaromonas sp. JS666	0
PRUM264731 ncbi	Prevotella ruminicola 23	0
PPUT76869 ncbi	Pseudomonas putida GB-1	0
PPUT351746 ncbi	Pseudomonas putida F1	0
PPUT160488 ncbi	Pseudomonas putida KT2440	0
PPEN278197 ncbi	Pediococcus pentosaceus ATCC 25745	0
PNAP365044 ncbi	Polaromonas naphthalenivorans CJ2	0
PMOB403833 ncbi	Petrotoga mobilis SJ95	0
PMEN399739 ncbi	Pseudomonas mendocina ymp	0
PMAR93060 ncbi	Prochlorococcus marinus MIT 9215	0
PMAR74547 ncbi	Prochlorococcus marinus MIT 9313	0
PMAR74546 ncbi	Prochlorococcus marinus MIT 9312	0
PMAR59920 ncbi	Prochlorococcus marinus NATL2A	0
PMAR167555 ncbi	Prochlorococcus marinus NATL1A	0
PMAR167546 ncbi	Prochlorococcus marinus MIT 9301	0
PMAR167542 ncbi	Prochlorococcus marinus MIT 9515	0
PMAR167540	Prochlorococcus marinus pastoris MED4ax	0
PMAR167539 ncbi	Prochlorococcus marinus marinus CCMP1375	0
PMAR146891 ncbi	Prochlorococcus marinus AS9601	0
PLUT319225 ncbi	Chlorobium luteolum DSM 273	0
PINT246198	Prevotella intermedia 17	0
PHAL326442 ncbi	Pseudoalteromonas haloplanktis TAC125	0
PGIN242619 ncbi	Porphyromonas gingivalis W83	0
PFLU220664 ncbi	Pseudomonas fluorescens Pf-5	0
PFLU216595 ncbi	Pseudomonas fluorescens SBW25	0
PFLU205922 ncbi	Pseudomonas fluorescens Pf0-1	0
PENT384676 ncbi	Pseudomonas entomophila L48	0
PDIS435591 ncbi	Parabacteroides distasonis ATCC 8503	0
PCRY335284 ncbi	Psychrobacter cryohalolentis K5	0
PCAR338963 ncbi	Pelobacter carbinolicus DSM 2380	0
PATL342610 ncbi	Pseudoalteromonas atlantica T6c	0
PAST100379	Onion yellows phytoplasma	0
PARC259536 ncbi	Psychrobacter arcticus 273-4	0
PAER208964 ncbi	Pseudomonas aeruginosa PAO1	0
PAER208963 ncbi	Pseudomonas aeruginosa UCBPP-PA14	0
OTSU357244 ncbi	Orientia tsutsugamushi Boryong	0
OCAR504832 ncbi	Oligotropha carboxidovorans OM5	0
OANT439375 ncbi	Ochrobactrum anthropi ATCC 49188	1
NWIN323098 ncbi	Nitrobacter winogradskyi Nb-255	0
NSP387092 ncbi	Nitratiruptor sp. SB155-2	0
NSP35761	Nocardioides sp.	0
NSP103690 ncbi	Nostoc sp. PCC 7120	0
NSEN222891 ncbi	Neorickettsia sennetsu Miyayama	0
NPHA348780 ncbi	Natronomonas pharaonis DSM 2160	0
NOCE323261 ncbi	Nitrosococcus oceani ATCC 19707	0
NMUL323848 ncbi	Nitrosospira multiformis ATCC 25196	0
NMEN374833 ncbi	Neisseria meningitidis 053442	0
NMEN272831 ncbi	Neisseria meningitidis FAM18	0
NMEN122587 ncbi	Neisseria meningitidis Z2491	0
NMEN122586 ncbi	Neisseria meningitidis MC58	0
NHAM323097 ncbi	Nitrobacter hamburgensis X14	0
NGON242231 ncbi	Neisseria gonorrhoeae FA 1090	0
NFAR247156 ncbi	Nocardia farcinica IFM 10152	0
NEUT335283 ncbi	Nitrosomonas eutropha C91	0
NEUR228410 ncbi	Nitrosomonas europaea ATCC 19718	0
NARO279238 ncbi	Novosphingobium aromaticivorans DSM 12444	0
MXAN246197 ncbi	Myxococcus xanthus DK 1622	0
MVAN350058 ncbi	Mycobacterium vanbaalenii PYR-1	1
MTUB419947 ncbi	Mycobacterium tuberculosis H37Ra	0
MTUB336982 ncbi	Mycobacterium tuberculosis F11	0
MTHE264732 ncbi	Moorella thermoacetica ATCC 39073	0
MTBRV ncbi	Mycobacterium tuberculosis H37Rv	0
MTBCDC ncbi	Mycobacterium tuberculosis CDC1551	0
MSTA339860 ncbi	Methanosphaera stadtmanae DSM 3091	0
MSP409	Methylobacterium sp.	1
MSP400668 ncbi	Marinomonas sp. MWYL1	0
MSP266779 ncbi	Chelativorans sp. BNC1	0
MSP189918 ncbi	Mycobacterium sp. KMS	0
MSP164757 ncbi	Mycobacterium sp. JLS	0
MSP164756 ncbi	Mycobacterium sp. MCS	0
MSME246196 ncbi	Mycobacterium smegmatis MC2 155	0
MPET420662 ncbi	Methylibium petroleiphilum PM1	0
MMOB267748 ncbi	Mycoplasma mobile 163K	0
MMAR394221 ncbi	Maricaulis maris MCS10	0
MMAG342108 ncbi	Magnetospirillum magneticum AMB-1	0
MLEP272631 ncbi	Mycobacterium leprae TN	0
MKAN190192 ncbi	Methanopyrus kandleri AV19	1
MGIL350054 ncbi	Mycobacterium gilvum PYR-GCK	1
MGEN243273 ncbi	Mycoplasma genitalium G37	0
MFLO265311 ncbi	Mesoplasma florum L1	1
MEXT419610 ncbi	Methylobacterium extorquens PA1	1
MBOV410289 ncbi	Mycobacterium bovis BCG str. Pasteur 1173P2	0
MBOV233413 ncbi	Mycobacterium bovis AF2122/97	0
MAVI243243 ncbi	Mycobacterium avium 104	0
MART243272 ncbi	Mycoplasma arthritidis 158L3-1	0
MAQU351348 ncbi	Marinobacter aquaeolei VT8	0
MAER449447 ncbi	Microcystis aeruginosa NIES-843	0
MABS561007 ncbi	Mycobacterium abscessus ATCC 19977	0
LSAK314315 ncbi	Lactobacillus sakei sakei 23K	0
LREU557436 ncbi	Lactobacillus reuteri DSM 20016	0
LPNE400673 ncbi	Legionella pneumophila Corby	0
LPNE297246 ncbi	Legionella pneumophila Paris	0
LPNE297245 ncbi	Legionella pneumophila Lens	0
LPNE272624 ncbi	Legionella pneumophila pneumophila Philadelphia 1	0
LLAC272623 ncbi	Lactococcus lactis lactis Il1403	0
LJOH257314 ncbi	Lactobacillus johnsonii NCC 533	0
LINT363253 ncbi	Lawsonia intracellularis PHE/MN1-00	0
LINT267671 ncbi	Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130	0
LINT189518 ncbi	Leptospira interrogans serovar Lai str. 56601	0
LHEL405566 ncbi	Lactobacillus helveticus DPC 4571	1
LGAS324831 ncbi	Lactobacillus gasseri ATCC 33323	0
LDEL390333 ncbi	Lactobacillus delbrueckii bulgaricus ATCC 11842	0
LDEL321956 ncbi	Lactobacillus delbrueckii bulgaricus ATCC BAA-365	0
LCHO395495 ncbi	Leptothrix cholodnii SP-6	0
LBOR355277 ncbi	Leptospira borgpetersenii serovar Hardjo-bovis JB197	0
LBOR355276 ncbi	Leptospira borgpetersenii serovar Hardjo-bovis L550	0
LBIF456481 ncbi	Leptospira biflexa serovar Patoc strain Patoc 1 (Paris)	0
LBIF355278 ncbi	Leptospira biflexa serovar Patoc strain Patoc 1 (Ames)	0
LACI272621 ncbi	Lactobacillus acidophilus NCFM	1
KRAD266940 ncbi	Kineococcus radiotolerans SRS30216	1
JSP375286 ncbi	Janthinobacterium sp. Marseille	0
JSP290400 ncbi	Jannaschia sp. CCS1	0
ILOI283942 ncbi	Idiomarina loihiensis L2TR	0
HWAL362976 ncbi	Haloquadratum walsbyi DSM 16790	0
HSP64091 ncbi	Halobacterium sp. NRC-1	0
HSAL478009 ncbi	Halobacterium salinarum R1	0
HPYL85963 ncbi	Helicobacter pylori J99	0
HPYL357544 ncbi	Helicobacter pylori HPAG1	0
HPY ncbi	Helicobacter pylori 26695	0
HNEP81032	Hyphomonas neptunium	0
HMUK485914 ncbi	Halomicrobium mukohataei DSM 12286	0
HMOD498761 ncbi	Heliobacterium modesticaldum Ice1	0
HMAR272569 ncbi	Haloarcula marismortui ATCC 43049	0
HINF374930 ncbi	Haemophilus influenzae PittEE	0
HINF281310 ncbi	Haemophilus influenzae 86-028NP	0
HHEP235279 ncbi	Helicobacter hepaticus ATCC 51449	0
HHAL349124 ncbi	Halorhodospira halophila SL1	0
HCHE349521 ncbi	Hahella chejuensis KCTC 2396	0
HAUR316274 ncbi	Herpetosiphon aurantiacus ATCC 23779	1
HARS204773 ncbi	Herminiimonas arsenicoxydans	0
HACI382638 ncbi	Helicobacter acinonychis Sheeba	0
GVIO251221 ncbi	Gloeobacter violaceus PCC 7421	0
GURA351605 ncbi	Geobacter uraniireducens Rf4	0
GSUL243231 ncbi	Geobacter sulfurreducens PCA	0
GOXY290633 ncbi	Gluconobacter oxydans 621H	0
GMET269799 ncbi	Geobacter metallireducens GS-15	0
GFOR411154 ncbi	Gramella forsetii KT0803	0
GBET391165 ncbi	Granulibacter bethesdensis CGDNIH1	0
FTUL458234 ncbi	Francisella tularensis holarctica FTNF002-00	0
FTUL418136 ncbi	Francisella tularensis tularensis WY96-3418	0
FTUL401614 ncbi	Francisella novicida U112	0
FTUL393115 ncbi	Francisella tularensis tularensis FSC198	0
FTUL393011 ncbi	Francisella tularensis holarctica OSU18	0
FTUL351581	Francisella tularensis holarctica FSC200	0
FSUC59374 ncbi	Fibrobacter succinogenes succinogenes S85	0
FSP1855	Frankia sp. EAN1pec	0
FSP106370 ncbi	Frankia sp. CcI3	0
FRANT ncbi	Francisella tularensis tularensis SCHU S4	0
FPHI484022 ncbi	Francisella philomiragia philomiragia ATCC 25017	0
FNUC190304 ncbi	Fusobacterium nucleatum nucleatum ATCC 25586	0
FNOD381764 ncbi	Fervidobacterium nodosum Rt17-B1	0
FJOH376686 ncbi	Flavobacterium johnsoniae UW101	0
FALN326424 ncbi	Frankia alni ACN14a	0
ERUM302409 ncbi	Ehrlichia ruminantium Gardel	0
ERUM254945 ncbi	Ehrlichia ruminantium Welgevonden	0
ELIT314225 ncbi	Erythrobacter litoralis HTCC2594	0
ECHA205920 ncbi	Ehrlichia chaffeensis Arkansas	0
ECAN269484 ncbi	Ehrlichia canis Jake	0
DVUL882 ncbi	Desulfovibrio vulgaris Hildenborough	0
DSP255470 ncbi	Dehalococcoides sp. CBDB1	0
DSP216389 ncbi	Dehalococcoides sp. BAV1	0
DSHI398580 ncbi	Dinoroseobacter shibae DFL 12	0
DRED349161 ncbi	Desulfotomaculum reducens MI-1	0
DRAD243230 ncbi	Deinococcus radiodurans R1	0
DPSY177439 ncbi	Desulfotalea psychrophila LSv54	0
DOLE96561 ncbi	Desulfococcus oleovorans Hxd3	0
DNOD246195 ncbi	Dichelobacter nodosus VCS1703A	0
DHAF138119 ncbi	Desulfitobacterium hafniense Y51	0
DGEO319795 ncbi	Deinococcus geothermalis DSM 11300	0
DETH243164 ncbi	Dehalococcoides ethenogenes 195	0
DDES207559 ncbi	Desulfovibrio desulfuricans desulfuricans G20	0
DARO159087 ncbi	Dechloromonas aromatica RCB	0
CVIO243365 ncbi	Chromobacterium violaceum ATCC 12472	0
CVES412965 ncbi	Candidatus Vesicomyosocius okutanii HA	0
CTRA471473 ncbi	Chlamydia trachomatis L2b/UCH-1/proctitis	0
CTRA471472 ncbi	Chlamydia trachomatis 434/Bu	0
CTET212717 ncbi	Clostridium tetani E88	1
CTEP194439 ncbi	Chlorobium tepidum TLS	0
CSUL444179 ncbi	Candidatus Sulcia muelleri GWSS	0
CSP501479	Citreicella sp. SE45	1
CSAL290398 ncbi	Chromohalobacter salexigens DSM 3043	1
CRUT413404 ncbi	Candidatus Ruthia magnifica Cm (Calyptogena magnifica)	0
CPSY167879 ncbi	Colwellia psychrerythraea 34H	0
CPRO264201 ncbi	Candidatus Protochlamydia amoebophila UWE25	0
CPNE182082 ncbi	Chlamydophila pneumoniae TW-183	0
CPNE138677 ncbi	Chlamydophila pneumoniae J138	0
CPNE115713 ncbi	Chlamydophila pneumoniae CWL029	0
CPNE115711 ncbi	Chlamydophila pneumoniae AR39	0
CPHY357809 ncbi	Clostridium phytofermentans ISDg	0
CPEL335992 ncbi	Candidatus Pelagibacter ubique HTCC1062	0
CNOV386415 ncbi	Clostridium novyi NT	1
CMUR243161 ncbi	Chlamydia muridarum Nigg	0
CKLU431943 ncbi	Clostridium kluyveri DSM 555	0
CJEJ407148 ncbi	Campylobacter jejuni jejuni 81116	0
CJEJ360109 ncbi	Campylobacter jejuni doylei 269.97	0
CJEJ354242 ncbi	Campylobacter jejuni jejuni 81-176	0
CJEJ195099 ncbi	Campylobacter jejuni RM1221	0
CJEJ192222 ncbi	Campylobacter jejuni jejuni NCTC 11168	0
CJEI306537 ncbi	Corynebacterium jeikeium K411	0
CJAP155077	Cellvibrio japonicus	0
CHYD246194 ncbi	Carboxydothermus hydrogenoformans Z-2901	0
CHUT269798 ncbi	Cytophaga hutchinsonii ATCC 33406	0
CHOM360107 ncbi	Campylobacter hominis ATCC BAA-381	0
CFET360106 ncbi	Campylobacter fetus fetus 82-40	0
CFEL264202 ncbi	Chlamydophila felis Fe/C-56	0
CEFF196164 ncbi	Corynebacterium efficiens YS-314	0
CDES477974 ncbi	Candidatus Desulforudis audaxviator MP104C	0
CCUR360105 ncbi	Campylobacter curvus 525.92	0
CCON360104 ncbi	Campylobacter concisus 13826	0
CCHL340177 ncbi	Chlorobium chlorochromatii CaD3	0
CCAV227941 ncbi	Chlamydophila caviae GPIC	0
CBUR434922 ncbi	Coxiella burnetii Dugway 5J108-111	0
CBUR360115 ncbi	Coxiella burnetii RSA 331	0
CBUR227377 ncbi	Coxiella burnetii RSA 493	0
CBLO291272 ncbi	Candidatus Blochmannia pennsylvanicus BPEN	0
CBLO203907 ncbi	Candidatus Blochmannia floridanus	0
CAULO ncbi	Caulobacter crescentus CB15	0
CABO218497 ncbi	Chlamydophila abortus S26/3	0
BXEN266265 ncbi	Burkholderia xenovorans LB400	0
BWEI315730 ncbi	Bacillus weihenstephanensis KBAB4	0
BVIE269482 ncbi	Burkholderia vietnamiensis G4	0
BTUR314724 ncbi	Borrelia turicatae 91E135	0
BTRI382640 ncbi	Bartonella tribocorum CIP 105476	0
BTHU412694 ncbi	Bacillus thuringiensis Al Hakam	0
BTHU281309 ncbi	Bacillus thuringiensis serovar konkukian str. 97-27	0
BTHE226186 ncbi	Bacteroides thetaiotaomicron VPI-5482	0
BTHA271848 ncbi	Burkholderia thailandensis E264	0
BSUI470137 ncbi	Brucella suis ATCC 23445	0
BSUI204722 ncbi	Brucella suis 1330	0
BSP376	Bradyrhizobium sp.	0
BSP36773	Burkholderia sp.	0
BSP107806 ncbi	Buchnera aphidicola APS (Acyrthosiphon pisum)	0
BQUI283165 ncbi	Bartonella quintana Toulouse	0
BPSE320373 ncbi	Burkholderia pseudomallei 668	0
BPSE320372 ncbi	Burkholderia pseudomallei 1710b	0
BPSE272560 ncbi	Burkholderia pseudomallei K96243	0
BPET94624	Bordetella petrii	0
BPER257313 ncbi	Bordetella pertussis Tohama I	0
BPAR257311 ncbi	Bordetella parapertussis 12822	0
BOVI236	Brucella ovis	0
BMEL359391 ncbi	Brucella melitensis biovar Abortus 2308	0
BMEL224914 ncbi	Brucella melitensis bv. 1 str. 16M	0
BMAL320389 ncbi	Burkholderia mallei NCTC 10247	0
BMAL320388 ncbi	Burkholderia mallei SAVP1	0
BMAL243160 ncbi	Burkholderia mallei ATCC 23344	0
BLON206672 ncbi	Bifidobacterium longum NCC2705	0
BJAP224911 ncbi	Bradyrhizobium japonicum USDA 110	1
BHER314723 ncbi	Borrelia hermsii DAH	0
BHEN283166 ncbi	Bartonella henselae Houston-1	0
BGAR290434 ncbi	Borrelia garinii PBi	0
BFRA295405 ncbi	Bacteroides fragilis YCH46	0
BFRA272559 ncbi	Bacteroides fragilis NCTC 9343	0
BCIC186490	Candidatus Baumannia cicadellinicola	0
BCER572264 ncbi	Bacillus cereus 03BB102	0
BCER226900 ncbi	Bacillus cereus ATCC 14579	0
BCEN331272 ncbi	Burkholderia cenocepacia HI2424	0
BCEN331271 ncbi	Burkholderia cenocepacia AU 1054	0
BCAN483179 ncbi	Brucella canis ATCC 23365	0
BBUR224326 ncbi	Borrelia burgdorferi B31	0
BBRO257310 ncbi	Bordetella bronchiseptica RB50	0
BBAC360095 ncbi	Bartonella bacilliformis KC583	0
BBAC264462 ncbi	Bdellovibrio bacteriovorus HD100	0
BAPH372461 ncbi	Buchnera aphidicola Cc (Cinara cedri)	0
BAPH198804 ncbi	Buchnera aphidicola Sg (Schizaphis graminum)	0
BANT592021 ncbi	Bacillus anthracis A0248	0
BANT568206 ncbi	Bacillus anthracis CDC 684	0
BANT261594 ncbi	Bacillus anthracis Ames Ancestor	0
BANT260799 ncbi	Bacillus anthracis Sterne	0
BAMB398577 ncbi	Burkholderia ambifaria MC40-6	0
BAMB339670 ncbi	Burkholderia ambifaria AMMD	0
BAFZ390236 ncbi	Borrelia afzelii PKo	0
BABO262698 ncbi	Brucella abortus bv. 1 str. 9-941	0
AYEL322098 ncbi	Aster yellows witches-broom phytoplasma AYWB	0
AVAR240292 ncbi	Anabaena variabilis ATCC 29413	0
AURANTIMONAS	Aurantimonas manganoxydans SI85-9A1	0
ASP76114 ncbi	Aromatoleum aromaticum EbN1	0
ASP62977 ncbi	Acinetobacter sp. ADP1	0
ASP62928 ncbi	Azoarcus sp. BH72	0
ASP232721 ncbi	Acidovorax sp. JS42	0
APHA212042 ncbi	Anaplasma phagocytophilum HZ	0
AORE350688 ncbi	Alkaliphilus oremlandii OhILAs	0
ANAE240017	Actinomyces oris MG1	0
AMET293826 ncbi	Alkaliphilus metalliredigens QYMF	0
AMAR329726 ncbi	Acaryochloris marina MBIC11017	0
AMAR234826 ncbi	Anaplasma marginale St. Maries	0
ALAI441768 ncbi	Acholeplasma laidlawii PG-8A	0
AFER243159 ncbi	Acidithiobacillus ferrooxidans ATCC 23270	0
AEHR187272 ncbi	Alkalilimnicola ehrlichii MLHE-1	0
ADEH290397 ncbi	Anaeromyxobacter dehalogenans 2CP-C	0
ACRY349163 ncbi	Acidiphilium cryptum JF-5	0
ACEL351607 ncbi	Acidothermus cellulolyticus 11B	0
ACAU438753 ncbi	Azorhizobium caulinodans ORS 571	0
ABUT367737 ncbi	Arcobacter butzleri RM4018	0
ABOR393595 ncbi	Alcanivorax borkumensis SK2	0
ABAU360910 ncbi	Bordetella avium 197N	0
AAVE397945 ncbi	Acidovorax citrulli AAC00-1	0
AAEO224324 ncbi	Aquifex aeolicus VF5	0

Names of the homologs of the genes in the group in each of these orgs

	G7859	G7858	G7856	EG12495	EG12494	EG12286	EG12285
ZMOB264203
XORY360094
XORY342109
XORY291331
XFAS405440
XFAS183190
XFAS160492
XCAM487884
XCAM316273
XCAM314565
XCAM190485
XAXO190486
XAUT78245
WSUC273121
WPIP955
WPIP80849
VEIS391735
UURE95667
UURE95664
UPAR505682
TVOL273116
TTUR377629
TTHE300852
TTHE262724
TSP28240
TROS309801
TPET390874
TPEN368408		TPEN_0372
TPAL243276
TMAR243274
TLET416591
TFUS269800
TERY203124
TELO197221
TDEN326298
TDEN292415
TDEN243275
TCRU317025
TACI273075
SWOL335541
STRO369723
STHE322159
STHE299768
STHE264199
SSP94122
SSP84588
SSP64471
SSP644076
SSP387093
SSP321332
SSP321327
SSP292414
SSP1148
SSP1131
SSED425104
SRUB309807
SPEA398579
SONE211586
SMEL266834
SMED366394
SMAR399550		SMAR_0492
SLOI323850
SLAC55218
SHAL458817
SGLO343509				SG2041
SFUM335543						SFUM_1980
SERY405948	SACE_2995
SELO269084
SDEN318161
SDEG203122
SBAL402882
SBAL399599
SAVE227882
SARE391037
SALA317655
SACI56780
RXYL266117
RTYP257363
RSPH349102
RSPH349101
RSPH272943
RSP357808
RSOL267608
RSAL288705
RRUB269796
RRIC452659
RRIC392021
RPRO272947
RPOM246200
RPAL316058
RPAL316057
RPAL316056
RPAL316055
RPAL258594
RMET266264
RMAS416276
RLEG216596
RFER338969
RFEL315456
REUT381666
REUT264198
RETL347834
RDEN375451
RCON272944
RCAS383372
RCAN293613
RBEL391896
RBEL336407
RALB246199
RAKA293614
PTOR263820
PTHE370438
PSYR223283
PSYR205918
PSTU379731
PSP56811
PSP312153
PSP296591
PRUM264731
PPUT76869
PPUT351746
PPUT160488
PPEN278197
PNAP365044
PMOB403833
PMEN399739
PMAR93060
PMAR74547
PMAR74546
PMAR59920
PMAR167555
PMAR167546
PMAR167542
PMAR167540
PMAR167539
PMAR146891
PLUT319225
PINT246198
PHAL326442
PGIN242619
PFLU220664
PFLU216595
PFLU205922
PENT384676
PDIS435591
PCRY335284
PCAR338963
PATL342610
PAST100379
PARC259536
PAER208964
PAER208963
OTSU357244
OCAR504832
OANT439375				OANT_4120
NWIN323098
NSP387092
NSP35761
NSP103690
NSEN222891
NPHA348780
NOCE323261
NMUL323848
NMEN374833
NMEN272831
NMEN122587
NMEN122586
NHAM323097
NGON242231
NFAR247156
NEUT335283
NEUR228410
NARO279238
MXAN246197
MVAN350058				MVAN_5589
MTUB419947
MTUB336982
MTHE264732
MTBRV
MTBCDC
MSTA339860
MSP409	M446_2286
MSP400668
MSP266779
MSP189918
MSP164757
MSP164756
MSME246196
MPET420662
MMOB267748
MMAR394221
MMAG342108
MLEP272631
MKAN190192							MK0153
MGIL350054				MFLV_1219
MGEN243273
MFLO265311			MFL643
MEXT419610	MEXT_2684
MBOV410289
MBOV233413
MAVI243243
MART243272
MAQU351348
MAER449447
MABS561007
LSAK314315
LREU557436
LPNE400673
LPNE297246
LPNE297245
LPNE272624
LLAC272623
LJOH257314
LINT363253
LINT267671
LINT189518
LHEL405566				LHV_1844
LGAS324831
LDEL390333
LDEL321956
LCHO395495
LBOR355277
LBOR355276
LBIF456481
LBIF355278
LACI272621				LBA1777
KRAD266940	KRAD_3593
JSP375286
JSP290400
ILOI283942
HWAL362976
HSP64091
HSAL478009
HPYL85963
HPYL357544
HPY
HNEP81032
HMUK485914
HMOD498761
HMAR272569
HINF374930
HINF281310
HHEP235279
HHAL349124
HCHE349521
HAUR316274				HAUR_1527
HARS204773
HACI382638
GVIO251221
GURA351605
GSUL243231
GOXY290633
GMET269799
GFOR411154
GBET391165
FTUL458234
FTUL418136
FTUL401614
FTUL393115
FTUL393011
FTUL351581
FSUC59374
FSP1855
FSP106370
FRANT
FPHI484022
FNUC190304
FNOD381764
FJOH376686
FALN326424
ERUM302409
ERUM254945
ELIT314225
ECHA205920
ECAN269484
DVUL882
DSP255470
DSP216389
DSHI398580
DRED349161
DRAD243230
DPSY177439
DOLE96561
DNOD246195
DHAF138119
DGEO319795
DETH243164
DDES207559
DARO159087
CVIO243365
CVES412965
CTRA471473
CTRA471472
CTET212717				CTC_00277
CTEP194439
CSUL444179
CSP501479	CSE45_1189
CSAL290398				CSAL_2648
CRUT413404
CPSY167879
CPRO264201
CPNE182082
CPNE138677
CPNE115713
CPNE115711
CPHY357809
CPEL335992
CNOV386415				NT01CX_1443
CMUR243161
CKLU431943
CJEJ407148
CJEJ360109
CJEJ354242
CJEJ195099
CJEJ192222
CJEI306537
CJAP155077
CHYD246194
CHUT269798
CHOM360107
CFET360106
CFEL264202
CEFF196164
CDES477974
CCUR360105
CCON360104
CCHL340177
CCAV227941
CBUR434922
CBUR360115
CBUR227377
CBLO291272
CBLO203907
CAULO
CABO218497
BXEN266265
BWEI315730
BVIE269482
BTUR314724
BTRI382640
BTHU412694
BTHU281309
BTHE226186
BTHA271848
BSUI470137
BSUI204722
BSP376
BSP36773
BSP107806
BQUI283165
BPSE320373
BPSE320372
BPSE272560
BPET94624
BPER257313
BPAR257311
BOVI236
BMEL359391
BMEL224914
BMAL320389
BMAL320388
BMAL243160
BLON206672
BJAP224911	BLR5974
BHER314723
BHEN283166
BGAR290434
BFRA295405
BFRA272559
BCIC186490
BCER572264
BCER226900
BCEN331272
BCEN331271
BCAN483179
BBUR224326
BBRO257310
BBAC360095
BBAC264462
BAPH372461
BAPH198804
BANT592021
BANT568206
BANT261594
BANT260799
BAMB398577
BAMB339670
BAFZ390236
BABO262698
AYEL322098
AVAR240292
AURANTIMONAS
ASP76114
ASP62977
ASP62928
ASP232721
APHA212042
AORE350688
ANAE240017
AMET293826
AMAR329726
AMAR234826
ALAI441768
AFER243159
AEHR187272
ADEH290397
ACRY349163
ACEL351607
ACAU438753
ABUT367737
ABOR393595
ABAU360910
AAVE397945
AAEO224324

Organism features enriched in list (features available for 386 out of the 414 orgs in the list)

Feature	Pvalue	Num occurrences in list	Total num occurrences
Arrangment:Chains	1.809e-6	41	92
Arrangment:Clusters	3.725e-6	2	17
Arrangment:Pairs	2.659e-12	42	112
Arrangment:Singles	0.0045463	176	286
Disease:Gastroenteritis	0.0014501	3	13
Disease:None	0.0093434	46	58
Disease:Pneumonia	0.0004976	2	12
Endospores:No	6.455e-10	106	211
Endospores:Yes	0.0030445	26	53
GC_Content_Range4:0-40	0.0017956	126	213
GC_Content_Range4:40-60	5.591e-6	124	224
GC_Content_Range4:60-100	6.602e-18	135	145
GC_Content_Range7:40-50	0.0066186	67	117
GC_Content_Range7:50-60	0.0007720	57	107
GC_Content_Range7:60-70	1.134e-18	127	134
Genome_Size_Range5:6-10	0.0000266	43	47
Genome_Size_Range9:2-3	0.0003752	64	120
Genome_Size_Range9:4-5	0.0013183	51	96
Genome_Size_Range9:6-8	0.0000182	36	38
Gram_Stain:Gram_Neg	1.735e-9	254	333
Gram_Stain:Gram_Pos	3.967e-11	66	150
Motility:No	2.891e-6	77	151
Optimal_temp.:-	2.440e-9	203	257
Optimal_temp.:25-30	0.0003394	19	19
Optimal_temp.:30-35	0.0066241	1	7
Optimal_temp.:30-37	7.453e-8	1	18
Optimal_temp.:37	0.0000102	51	106
Oxygen_Req:Aerobic	5.550e-13	159	185
Oxygen_Req:Anaerobic	0.0051102	57	102
Oxygen_Req:Facultative	1.582e-21	81	201
Pathogenic_in:Human	4.111e-9	109	213
Pathogenic_in:No	0.0009133	166	226
Salinity:Non-halophilic	0.0001348	54	106
Shape:Coccus	5.144e-10	29	82
Shape:Irregular_coccus	3.725e-6	2	17
Shape:Spiral	4.865e-7	34	34
Temp._range:Hyperthermophilic	0.0012931	8	23

ORGANISMS ENRICHED FOR GROUP:

Total number of orgs: 30
Effective number of orgs (counting one per cluster within 468 clusters): 13

Organism list
Homologs in each organism in the list
Features enriched in organism list

Follow (ncbi) link, when present, to find the set of organism features for each organism

Org ID	Org Name	Pvalue	# genes in tgt genome found in org	# genes in group found in org
MPNE272634 ncbi	Mycoplasma pneumoniae M129	4.395e-10	94	7
MHYO295358 ncbi	Mycoplasma hyopneumoniae 232	7.386e-10	101	7
MHYO262719 ncbi	Mycoplasma hyopneumoniae J	8.508e-10	103	7
MHYO262722 ncbi	Mycoplasma hyopneumoniae 7448	9.122e-10	104	7
MSYN262723 ncbi	Mycoplasma synoviae 53	1.046e-9	106	7
MPUL272635 ncbi	Mycoplasma pulmonis UAB CTIP	4.536e-9	130	7
MPEN272633 ncbi	Mycoplasma penetrans HF-2	1.830e-8	158	7
SPYO370553 ncbi	Streptococcus pyogenes MGAS2096	0.0005847	685	7
SPYO193567 ncbi	Streptococcus pyogenes SSI-1	0.0006154	690	7
SPYO198466 ncbi	Streptococcus pyogenes MGAS315	0.0006947	702	7
SPYO370551 ncbi	Streptococcus pyogenes MGAS9429	0.0007158	705	7
SPYO160490 ncbi	Streptococcus pyogenes M1 GAS	0.0007597	711	7
SPYO186103 ncbi	Streptococcus pyogenes MGAS8232	0.0007597	711	7
SPYO293653 ncbi	Streptococcus pyogenes MGAS5005	0.0007903	715	7
SPYO286636 ncbi	Streptococcus pyogenes MGAS10394	0.0008139	718	7
SPYO370554 ncbi	Streptococcus pyogenes MGAS10750	0.0008798	726	7
SPYO319701 ncbi	Streptococcus pyogenes MGAS6180	0.0008884	727	7
SPYO370552 ncbi	Streptococcus pyogenes MGAS10270	0.0009412	733	7
SSUI391295 ncbi	Streptococcus suis 05ZYH33	0.0010650	746	7
SPNE170187 ncbi	Streptococcus pneumoniae G54	0.0012945	767	7
SSUI391296 ncbi	Streptococcus suis 98HAH33	0.0014832	782	7
SPNE487213 ncbi	Streptococcus pneumoniae Taiwan19F-14	0.0014966	783	7
SPNE1313	Streptococcus pneumoniae	0.0015790	789	7
SPNE171101 ncbi	Streptococcus pneumoniae R6	0.0016361	793	7
SMUT210007 ncbi	Streptococcus mutans UA159	0.0016507	794	7
SPNE488221 ncbi	Streptococcus pneumoniae 70585	0.0017100	798	7
SPNE487214 ncbi	Streptococcus pneumoniae Hungary19A-6	0.0018183	805	7
SAGA211110 ncbi	Streptococcus agalactiae NEM316	0.0030375	866	7
SAGA208435 ncbi	Streptococcus agalactiae 2603V/R	0.0031121	869	7
SAGA205921 ncbi	Streptococcus agalactiae A909	0.0031374	870	7

Names of the homologs of the genes in the group in each of these orgs

	G7859	G7858	G7856	EG12495	EG12494	EG12286	EG12285
MPNE272634	MPN492	MPN493	MPN496	MPN494	MPN495	MPN492	MPN493
MHYO295358	MHP440	MHP441	MHP388	MHP386	MHP387	MHP440	MHP441
MHYO262719	MHJ_0435	MHJ_0436	MHJ_0372	MHJ_0370	MHJ_0371	MHJ_0435	MHJ_0436
MHYO262722	MHP7448_0437	MHP7448_0438	MHP7448_0376	MHP7448_0374	MHP7448_0375	MHP7448_0437	MHP7448_0438
MSYN262723	MS53_0030	MS53_0029	MS53_0026	MS53_0028	MS53_0682	MS53_0030	MS53_0029
MPUL272635	MYPU_5980	MYPU_5970	MYPU_5940	MYPU_5960	MYPU_5950	MYPU_5980	MYPU_5970
MPEN272633	MYPE7170	MYPE7180	MYPE7220	MYPE7190	MYPE7200	MYPE7170	MYPE7180
SPYO370553	MGAS2096_SPY0160	MGAS2096_SPY0159	MGAS2096_SPY0156	MGAS2096_SPY0158	MGAS2096_SPY0157	MGAS2096_SPY0160	MGAS2096_SPY0159
SPYO193567	SPS0142	SPS0141	SPS0138	SPS0140	SPS0139	SPS0142	SPS0141
SPYO198466	SPYM3_0139	SPYM3_0138	SPYM3_0135	SPYM3_0137	SPYM3_0136	SPYM3_0139	SPYM3_0138
SPYO370551	MGAS9429_SPY0154	MGAS9429_SPY0153	MGAS9429_SPY0150	MGAS9429_SPY0152	MGAS9429_SPY0151	MGAS9429_SPY0154	MGAS9429_SPY0153
SPYO160490	SPY0178	SPY0177	SPY0174	SPY0176	SPY0175	SPY0178	SPY0177
SPYO186103	SPYM18_0177	SPYM18_0176	SPYM18_0173	SPYM18_0175	SPYM18_0174	SPYM18_0177	SPYM18_0176
SPYO293653	M5005_SPY0152	M5005_SPY0151	M5005_SPY0148	M5005_SPY0150	M5005_SPY0149	M5005_SPY0152	M5005_SPY0151
SPYO286636	M6_SPY0198	M6_SPY0197	M6_SPY0194	M6_SPY0196	M6_SPY0195	M6_SPY0198	M6_SPY0197
SPYO370554	MGAS10750_SPY0158	MGAS10750_SPY0157	MGAS10750_SPY0154	MGAS10750_SPY0156	MGAS10750_SPY0155	MGAS10750_SPY0158	MGAS10750_SPY0157
SPYO319701	M28_SPY0150	M28_SPY0149	M28_SPY0146	M28_SPY0148	M28_SPY0147	M28_SPY0150	M28_SPY0149
SPYO370552	MGAS10270_SPY0154	MGAS10270_SPY0153	MGAS10270_SPY0150	MGAS10270_SPY0152	MGAS10270_SPY0151	MGAS10270_SPY0154	MGAS10270_SPY0153
SSUI391295	SSU05_2059	SSU05_2060	SSU05_2063	SSU05_2061	SSU05_2062	SSU05_2059	SSU05_2060
SPNE170187	SPN20051	SPN20050	SPN20046	SPN20049	SPN20047	SPN20051	SPN20050
SSUI391296	SSU98_2062	SSU98_2063	SSU98_2066	SSU98_2064	SSU98_2065	SSU98_2062	SSU98_2063
SPNE487213	SPT_2029	SPT_2030	SPT_2033	SPT_2031	SPT_2032	SPT_2029	SPT_2030
SPNE1313	SPJ_2040	SPJ_2041	SPJ_2044	SPJ_2042	SPJ_2043	SPJ_2040	SPJ_2041
SPNE171101	SPR1845	SPR1846	SPR1849	SPR1847	SPR1848	SPR1845	SPR1846
SMUT210007	SMU_274	SMU_273	SMU_270	SMU_272	SMU_271	SMU_274	SMU_273
SPNE488221	SP70585_2120	SP70585_2121	SP70585_2124	SP70585_2122	SP70585_2123	SP70585_2120	SP70585_2121
SPNE487214	SPH_2187	SPH_2188	SPH_2191	SPH_2189	SPH_2190	SPH_2187	SPH_2188
SAGA211110	GBS1852	GBS1853	GBS1856	GBS1854	GBS1855	GBS1852	GBS1853
SAGA208435	SAG_1811	SAG_1812	SAG_1815	SAG_1813	SAG_1814	SAG_1811	SAG_1812
SAGA205921	SAK_1831	SAK_1832	SAK_1835	SAK_1833	SAK_1834	SAK_1831	SAK_1832

Organism features enriched in list (features available for 29 out of the 30 orgs in the list)

Feature	Pvalue	Num occurrences in list	Total num occurrences
Arrangment:Chains	1.354e-13	22	92
Disease:Enzootic_pneumonia	0.0023931	2	2
Disease:Meningitis	0.0032384	3	7
Disease:Wide_range_of_infections	5.742e-16	11	11
Disease:and_meningitis	0.0023931	2	2
Disease:pneumonia	6.463e-6	6	12
Disease:septicemia_and_arthritis	0.0023931	2	2
Endospores:No	4.278e-14	29	211
GC_Content_Range4:0-40	9.242e-11	27	213
GC_Content_Range4:40-60	0.0000917	2	224
GC_Content_Range7:30-40	5.203e-7	21	166
Genome_Size_Range5:0-2	1.001e-6	20	155
Genome_Size_Range9:0-1	0.0011088	6	27
Genome_Size_Range9:1-2	0.0008756	14	128
Gram_Stain:Gram_Neg	0.0001851	7	333
Gram_Stain:Gram_Pos	7.237e-8	21	150
Habitat:Host-associated	5.090e-6	22	206
Motility:No	5.490e-15	27	151
Motility:Yes	3.615e-6	2	267
Optimal_temp.:30-35	6.007e-8	6	7
Optimal_temp.:35	0.0032384	3	7
Optimal_temp.:37	0.0004749	13	106
Oxygen_Req:Facultative	9.416e-15	29	201
Pathogenic_in:Human	1.545e-6	23	213
Pathogenic_in:Swine	2.153e-7	5	5
Salinity:Non-halophilic	7.119e-10	20	106
Shape:Coccus	8.588e-15	22	82
Shape:Sphere	0.0000112	7	19
Temp._range:Mesophilic	0.0019660	29	473

ORGANISMS DEPLETED FOR GROUP:

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PHYLOGENETIC PROFILE SIMILARITY WITH KNOWN PATHWAYS:

Pathways or complexes with absolute value of Pearson coefficient with respect to candidate larger than 0.4 are listed below
The candidate is assumed to exist in orgs listed in section List of organisms containing most genes from the group

Pathway or complex	# Orgs containing it	# of those orgs also containing candidate	Pearson Coeff
PWY0-301 (L-ascorbate degradation, anaerobic)	84	67	0.7958
LYXMET-PWY (L-lyxose degradation)	87	58	0.6536
GLCMANNANAUT-PWY (superpathway of N-acetylglucosamine, N-acetylmannosamine and N-acetylneuraminate degradation)	134	65	0.5636
PWY0-1324 (N-acetylneuraminate and N-acetylmannosamine degradation)	135	65	0.5606
P441-PWY (superpathway of N-acetylneuraminate degradation)	63	42	0.5442
PWY-1861 (formaldehyde assimilation II (RuMP Cycle))	71	42	0.5009
RUMP-PWY (formaldehyde oxidation I)	68	40	0.4854
HEXITOLDEGSUPER-PWY (superpathway of hexitol degradation)	37	28	0.4757
PWY0-1315 (L-lactaldehyde degradation (anaerobic))	45	31	0.4713
SORBDEG-PWY (sorbitol degradation II)	53	32	0.4371
TREDEGLOW-PWY (trehalose degradation I (low osmolarity))	121	51	0.4348
MANNIDEG-PWY (mannitol degradation I)	99	45	0.4281
GLYCEROLMETAB-PWY (glycerol degradation V)	116	49	0.4249
PWY0-1355 (formate to trimethylamine N-oxide electron transfer)	31	23	0.4230
PWY-5861 (superpathway of demethylmenaquinone-8 biosynthesis)	50	30	0.4201
FUC-RHAMCAT-PWY (superpathway of fucose and rhamnose degradation)	19	17	0.4093
PWY-5480 (pyruvate fermentation to ethanol I)	109	46	0.4085
PWY-6038 (citrate degradation)	101	44	0.4083
RHAMCAT-PWY (rhamnose degradation)	91	41	0.4024

PAIRWISE GENOME CONTEXT SCORE MATRIX:

	G7858	G7856	EG12495	EG12494	EG12286	EG12285
G7859	0.999281	0.998887	0.998859	0.998861	0.999401	0.999099
G7858		0.998876	0.998953	0.998902	0.999114	0.999733
G7856			0.99962	0.999474	0.998517	0.998577
EG12495				0.999414	0.998544	0.998726
EG12494					0.998603	0.99866
EG12286						0.999283
EG12285

PAIRWISE BLAST SCORES:

	G7859	G7858	G7856	EG12495	EG12494	EG12286	EG12285
G7859	0.0f0	-	-	-	-	2.3e-83	-
G7858	-	0.0f0	-	-	-	-	8.7e-52
G7856	-	-	0.0f0	-	-	-	-
EG12495	-	-	-	0.0f0	-	-	-
EG12494	-	-	-	-	0.0f0	-	-
EG12286	2.3e-83	-	-	-	-	0.0f0	-
EG12285	-	3.6e-46	-	-	-	-	0.0f0

PATHWAYS OR PROTEIN COMPLEX MATCHES IN TARGET ORG:

For each case, all genes involved in the pathway or complex are listed. For each gene we list: a tag indicating whether the gene is part of the candidate list or not, the average and the minimum scores of the gene to the candidate list, the gene name, and its product names.

- PWY0-301 (L-ascorbate degradation, anaerobic) (degree of match pw to cand: 0.500, degree of match cand to pw: 0.286, average score: 0.999)
  Genes in pathway or complex:
   *in cand* 0.9992 0.9989 G7859 (ulaE) G7859-MONOMER (L-xylulose 5-phosphate 3-epimerase)
   *in cand* 0.9993 0.9989 G7858 (ulaD) G7858-MONOMER (3-keto-L-gulonate 6-phosphate decarboxylase)
             0.9988 0.9984 G7860 (ulaF) G7860-MONOMER (L-ribulose 5-phosphate 4-epimerase)
             0.9987 0.9983 G7855 (ulaG) G7855-MONOMER (L-ascorbate 6-phosphate lactonase)
  Genes in candidate but not in this pathway or complex:
   *in cand* 0.9992 0.9986 EG12285 (sgbH) EG12285-MONOMER (3-keto-L-gulonate 6-phosphate decarboxylase)
   *in cand* 0.9991 0.9985 EG12286 (sgbU) EG12286-MONOMER (predicted L-xylulose 5-phosphate 3-epimerase)
   *in cand* 0.9991 0.9986 EG12494 (ulaB) YJFT-MONOMER (UlaB)
   *in cand* 0.9992 0.9985 EG12495 (ulaC) YJFU-MONOMER (UlaC)
   *in cand* 0.9991 0.9985 G7856 (ulaA) SGAT-MONOMER (UlaA)

- EIISGA (L-ascorbate transporting phosphotransferase system) (degree of match pw to cand: 0.600, degree of match cand to pw: 0.429, average score: 0.502)
  Genes in pathway or complex:
   *in cand* 0.9992 0.9985 EG12495 (ulaC) YJFU-MONOMER (UlaC)
   *in cand* 0.9991 0.9986 EG12494 (ulaB) YJFT-MONOMER (UlaB)
             0.1705 0.0395 EG10788 (ptsH) PTSH-MONOMER (HPr)
             0.2398 0.1111 EG10789 (ptsI) PTSI-MONOMER (PTS enzyme I)
   *in cand* 0.9991 0.9985 G7856 (ulaA) SGAT-MONOMER (UlaA)
  Genes in candidate but not in this pathway or complex:
   *in cand* 0.9992 0.9986 EG12285 (sgbH) EG12285-MONOMER (3-keto-L-gulonate 6-phosphate decarboxylase)
   *in cand* 0.9991 0.9985 EG12286 (sgbU) EG12286-MONOMER (predicted L-xylulose 5-phosphate 3-epimerase)
   *in cand* 0.9993 0.9989 G7858 (ulaD) G7858-MONOMER (3-keto-L-gulonate 6-phosphate decarboxylase)
   *in cand* 0.9992 0.9989 G7859 (ulaE) G7859-MONOMER (L-xylulose 5-phosphate 3-epimerase)

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GENOME CONTEXT INFORMATION:

Each row corresponds to a replicon in an organism, each column to a gene in the candidate. The second column indicates whether the organims was included in the list used to compute the genome context scores or not. Some organisms are not included because they are phylogenetically too similar to others already in the list.
The number in the matrix indicate the position of the homolog of the gene in the replicon. All numbers are relative to the smaller one, which is assigned a position of zero. Two columns with the same number indicate that the two genes matched the same gene in that organism.

Genome browser links for gene clusters

The links below opens a genome browser BioCyc page for each cluster of genes in the target genome. These pages shows the central gene of the cluster in the target genome and its best homolog in the reference genomes, for the genomes that contain homologs for at least 75% of the genes in the group. Only one genome per phylogenetic cluster of organisms is shown, to keep the list smaller.

EG12494 EG12495 G7856 G7858 G7859 (centered at EG12495)
EG12285 EG12286 (centered at EG12286)

ORG:REPLICON:CIRC?\GENE	IN REF LIST	G7859	G7858	G7856	EG12495	EG12494	EG12286	EG12285
		112/623	155/623	149/623	162/623	97/623	102/623	154/623
AAUR290340:2:T	yes	1362	0	-	-	-	-	0
ABAC204669:0:T	yes	0	-	-	-	-	0	-
AFUL224325:0:T	yes	-	0	-	-	-	-	0
AHYD196024:0:T	yes	-	-	0	2	-	-	-
APER272557:0:T	yes	-	0	-	-	-	-	0
APLE416269:0:T	yes	5	0	2	1	2	5	0
APLE434271:0:T	no	5	0	2	1	2	5	0
ASAL382245:5:T	yes	-	-	2	0	-	-	-
ASP1667:3:T	yes	-	0	-	-	-	-	0
BAMY326423:0:T	yes	-	0	-	-	-	-	0
BCER288681:0:T	no	-	-	0	2	1	-	-
BCER315749:1:T	yes	-	-	0	2	-	-	-
BCER405917:1:T	yes	-	-	0	-	1	-	-
BCLA66692:0:T	yes	2581	2495	63	0	62	2581	2495
BHAL272558:0:T	yes	-	-	3	0	2	-	-
BJAP224911:0:F	yes	0	-	-	-	-	-	-
BLIC279010:0:T	yes	-	2253	2	0	-	-	2253
BPUM315750:0:T	yes	-	574	0	2	1	-	574
BSUB:0:T	yes	-	0	-	-	-	-	0
CACE272562:1:T	yes	-	0	-	-	-	-	0
CBEI290402:0:T	yes	-	1867	1	0	2	-	1867
CBOT36826:1:T	no	0	-	6	8	-	-	-
CBOT441770:0:T	yes	0	-	6	8	-	-	-
CBOT441771:0:T	no	0	-	5	7	-	-	-
CBOT441772:1:T	no	-	-	0	2	-	-	-
CBOT498213:1:T	no	-	-	0	2	-	-	-
CBOT508765:1:T	yes	0	-	4	230	3	0	-
CBOT515621:2:T	yes	-	-	0	2	-	-	-
CBOT536232:0:T	no	0	-	6	8	-	-	-
CDIF272563:1:T	yes	-	-	1313	1315	0	-	-
CDIP257309:0:T	yes	-	-	1	0	-	-	-
CGLU196627:0:T	yes	-	-	0	1	-	-	-
CKOR374847:0:T	yes	-	0	-	-	-	-	0
CMAQ397948:0:T	yes	0	373	-	-	-	0	373
CMET456442:0:T	yes	-	69	-	-	-	-	0
CMIC31964:2:T	yes	-	809	-	0	-	-	809
CMIC443906:2:T	yes	-	143	-	0	-	-	143
CNOV386415:0:T	yes	-	-	-	0	-	-	-
CPER195102:1:T	yes	-	-	2	0	1	-	-
CPER195103:0:T	no	147	-	143	0	144	147	-
CPER289380:3:T	yes	-	-	2	0	1	-	-
CSAL290398:0:T	yes	-	-	-	0	-	-	-
CSP501479:8:F	yes	0	-	-	-	-	-	-
CSP78:2:T	yes	0	-	-	-	-	0	-
CTET212717:0:T	yes	-	-	-	0	-	-	-
ECAR218491:0:T	yes	-	-	0	2	-	-	-
ECOL199310:0:T	no	868	866	862	865	864	1	0
ECOL316407:0:T	no	498	497	494	496	495	0	1
ECOL331111:6:T	no	645	643	640	642	641	1	0
ECOL362663:0:T	no	743	742	739	741	740	1	0
ECOL364106:1:T	no	663	662	659	661	660	1	0
ECOL405955:2:T	yes	1408	1407	1404	0	-	712	711
ECOL409438:6:T	yes	670	669	666	668	667	1	0
ECOL413997:0:T	no	653	652	649	651	650	1	0
ECOL439855:4:T	no	725	724	721	723	722	1	0
ECOL469008:0:T	no	3671	3672	3675	3673	3674	0	1
ECOL481805:0:T	no	3695	3696	3699	3697	3698	0	1
ECOL585034:0:T	no	650	649	646	648	647	1	0
ECOL585035:0:T	no	738	737	734	736	735	1	0
ECOL585055:0:T	no	695	694	691	693	692	1	0
ECOL585056:2:T	no	631	630	627	629	628	1	0
ECOL585057:0:T	no	569	568	565	567	566	1	0
ECOL585397:0:T	no	750	699	696	698	697	1	0
ECOL83334:0:T	no	4	3	0	2	1	4	3
ECOLI:0:T	no	629	628	625	627	626	1	0
ECOO157:0:T	no	4	3	0	2	1	4	3
EFAE226185:3:T	yes	3	2	0	1733	1	3	2
EFER585054:1:T	yes	643	642	639	641	640	1	0
ESP42895:1:T	yes	-	-	0	2	-	-	-
FMAG334413:1:T	yes	-	-	0	2	-	-	-
GKAU235909:1:T	yes	-	-	0	2	-	-	-
GTHE420246:1:T	yes	-	0	-	345	-	-	0
HAUR316274:2:T	yes	-	-	-	0	-	-	-
HBUT415426:0:T	yes	-	0	-	-	-	-	0
HDUC233412:0:T	yes	5	0	2	1	2	5	0
HINF71421:0:T	no	2	0	-	-	-	2	0
HSOM205914:1:T	yes	1	0	-	-	-	1	0
HSOM228400:0:T	no	1	0	-	-	-	1	0
IHOS453591:0:T	yes	-	0	-	-	-	-	0
KPNE272620:2:T	yes	623	622	619	621	620	1	0
KRAD266940:2:F	yes	0	-	-	-	-	-	-
LACI272621:0:T	yes	-	-	-	0	-	-	-
LBRE387344:2:T	yes	-	0	-	-	-	-	0
LCAS321967:1:T	yes	2334	2336	2338	0	-	2334	2336
LHEL405566:0:T	yes	-	-	-	0	-	-	-
LINN272626:1:T	no	-	-	0	2	1	-	-
LLAC272622:5:T	yes	-	-	0	2	-	-	-
LMES203120:1:T	yes	0	1	3	4	-	0	1
LMON169963:0:T	no	-	-	707	0	708	-	-
LMON265669:0:T	yes	-	-	0	2	1	-	-
LPLA220668:0:T	yes	-	-	0	313	-	-	-
LSPH444177:1:T	yes	-	-	0	2	-	-	-
LWEL386043:0:T	yes	-	-	0	2	1	-	-
LXYL281090:0:T	yes	-	-	-	0	1	-	-
MACE188937:0:T	yes	-	0	-	-	-	-	0
MAEO419665:0:T	yes	-	0	-	-	-	-	0
MBAR269797:1:T	yes	-	0	-	-	-	-	0
MBUR259564:0:T	yes	-	0	-	-	-	-	0
MCAP243233:0:T	yes	-	0	-	-	-	-	0
MCAP340047:0:T	yes	-	-	0	1	-	-	-
MEXT419610:0:T	yes	0	-	-	-	-	-	-
MFLA265072:0:T	yes	-	0	-	-	-	-	1401
MFLO265311:0:T	yes	-	-	0	-	-	-	-
MGIL350054:3:T	yes	-	-	-	0	-	-	-
MHUN323259:0:T	yes	-	0	-	-	-	-	0
MHYO262719:0:T	yes	65	66	2	0	1	65	66
MHYO262722:0:T	no	62	63	2	0	1	62	63
MHYO295358:0:T	no	55	56	2	0	1	55	56
MJAN243232:2:T	yes	-	0	-	-	-	-	1227
MKAN190192:0:T	yes	-	-	-	-	-	-	0
MLAB410358:0:T	yes	-	0	-	-	-	-	0
MLOT266835:2:T	yes	0	-	-	-	-	0	-
MMAR267377:0:T	yes	-	0	-	-	-	-	0
MMAR368407:0:T	yes	-	0	-	-	-	-	0
MMAR402880:1:T	yes	-	0	-	-	-	-	0
MMAR426368:0:T	yes	-	0	-	-	-	-	0
MMAR444158:0:T	yes	-	0	-	-	-	-	0
MMAZ192952:0:T	yes	-	0	-	-	-	-	66
MMYC272632:0:T	yes	-	-	1	0	-	-	-
MPEN272633:0:T	yes	0	1	5	2	3	0	1
MPNE272634:0:T	yes	0	1	4	2	3	0	1
MPUL272635:0:T	yes	4	3	0	2	1	4	3
MSED399549:0:T	yes	-	0	-	-	-	-	0
MSP409:2:T	yes	0	-	-	-	-	-	-
MSUC221988:0:T	yes	27	36	2	1	2	27	0
MSYN262723:0:T	yes	4	3	0	2	670	4	3
MTHE187420:0:T	yes	-	0	-	-	-	-	1344
MTHE349307:0:T	yes	-	0	-	-	-	-	0
MVAN350058:0:T	yes	-	-	-	0	-	-	-
OANT439375:4:T	yes	-	-	-	0	-	-	-
OIHE221109:0:T	yes	594	0	608	610	609	613	0
PABY272844:0:T	yes	-	0	-	-	-	-	0
PACN267747:0:T	yes	448	447	0	1	-	448	447
PAER178306:0:T	yes	-	0	-	-	-	-	0
PARS340102:0:T	yes	-	0	-	-	-	-	0
PFUR186497:0:T	yes	-	0	-	-	-	-	0
PHOR70601:0:T	yes	-	0	-	-	-	-	0
PING357804:0:T	yes	-	-	0	2	-	-	-
PISL384616:0:T	yes	-	0	-	-	-	-	0
PLUM243265:0:F	yes	-	-	2	0	-	-	-
PMUL272843:1:T	yes	481	482	0	1	0	481	482
PPRO298386:1:T	yes	0	7	4	5	4	0	7
PSP117:0:T	yes	0	2152	-	-	-	0	2152
RSP101510:0:F	yes	-	0	-	-	-	-	-
RSP101510:3:F	yes	-	-	-	-	-	-	0
SACI330779:0:T	yes	-	0	-	-	-	-	0
SAGA205921:0:T	no	0	1	4	2	3	0	1
SAGA208435:0:T	no	0	1	4	2	3	0	1
SAGA211110:0:T	yes	0	1	4	2	3	0	1
SAUR158878:1:T	no	-	258	0	2	-	-	258
SAUR158879:1:T	no	-	236	0	2	-	-	236
SAUR196620:0:T	no	-	239	0	2	-	-	239
SAUR273036:0:T	no	-	245	0	2	-	-	245
SAUR282458:0:T	no	-	258	0	2	-	-	258
SAUR282459:0:T	no	-	246	0	2	-	-	246
SAUR359786:0:T	no	-	0	-	-	-	-	-
SAUR359786:1:T	no	-	-	0	2	-	-	233
SAUR359787:0:T	no	-	0	-	-	-	-	-
SAUR359787:1:T	no	-	-	0	2	-	-	215
SAUR367830:3:T	no	-	214	0	2	-	-	214
SAUR418127:0:T	yes	-	259	0	2	-	-	259
SAUR426430:0:T	no	-	227	0	2	-	-	227
SAUR93061:0:F	no	-	234	0	2	-	-	234
SAUR93062:1:T	no	-	212	0	2	-	-	212
SBOY300268:1:T	yes	0	1	4	2	3	0	1
SCO:2:F	yes	6474	-	0	-	-	6474	-
SDYS300267:1:T	yes	-	3	0	2	1	-	3
SENT209261:0:T	no	568	567	564	566	565	0	1
SENT220341:0:T	no	578	577	574	576	575	0	1
SENT295319:0:T	no	647	646	643	645	644	1	0
SENT321314:2:T	no	681	680	677	679	678	1	0
SENT454169:2:T	no	761	760	757	759	758	1	0
SEPI176279:1:T	yes	-	0	-	-	-	-	0
SEPI176280:0:T	no	-	0	-	-	-	-	0
SERY405948:0:T	yes	0	-	-	-	-	-	-
SFLE198214:0:T	yes	4	3	0	2	1	4	3
SFLE373384:0:T	no	374	373	370	372	371	0	1
SFUM335543:0:T	yes	-	-	-	-	-	0	-
SGLO343509:3:T	yes	-	-	-	0	-	-	-
SGOR29390:0:T	yes	-	-	2	0	-	-	-
SHAE279808:0:T	yes	-	0	-	-	-	-	0
SHIGELLA:0:T	no	4	3	0	2	1	4	3
SMAR399550:0:T	yes	-	0	-	-	-	-	-
SMUT210007:0:T	yes	4	3	0	2	1	4	3
SPNE1313:0:T	yes	0	1	4	2	3	0	1
SPNE170187:0:T	yes	0	1	4	2	3	0	1
SPNE171101:0:T	no	0	1	4	2	3	0	1
SPNE487213:0:T	no	0	1	4	2	3	0	1
SPNE487214:0:T	no	0	1	4	2	3	0	1
SPNE488221:0:T	no	0	1	4	2	3	0	1
SPRO399741:1:T	yes	1705	1704	3	0	-	1705	1704
SPYO160490:0:T	no	4	3	0	2	1	4	3
SPYO186103:0:T	no	4	3	0	2	1	4	3
SPYO193567:0:T	no	4	3	0	2	1	4	3
SPYO198466:0:T	no	4	3	0	2	1	4	3
SPYO286636:0:T	no	4	3	0	2	1	4	3
SPYO293653:0:T	no	4	3	0	2	1	4	3
SPYO319701:0:T	yes	4	3	0	2	1	4	3
SPYO370551:0:T	no	4	3	0	2	1	4	3
SPYO370552:0:T	no	4	3	0	2	1	4	3
SPYO370553:0:T	no	4	3	0	2	1	4	3
SPYO370554:0:T	yes	4	3	0	2	1	4	3
SSAP342451:2:T	yes	-	938	-	0	-	-	938
SSOL273057:0:T	yes	-	0	-	-	-	-	0
SSON300269:1:T	yes	3	2	-	1	0	3	2
SSUI391295:0:T	yes	0	1	4	2	3	0	1
SSUI391296:0:T	yes	0	1	4	2	3	0	1
STHE292459:0:T	yes	-	-	0	4	1	-	-
STOK273063:0:T	yes	-	0	-	-	-	-	0
STYP99287:1:T	yes	705	704	701	703	702	1	0
TKOD69014:0:T	yes	-	0	-	-	-	-	0
TPEN368408:1:T	yes	-	0	-	-	-	-	-
TPSE340099:0:T	yes	-	-	1	2	0	-	-
TSP1755:0:T	yes	-	-	1	0	2	-	-
TTEN273068:0:T	yes	-	-	1	0	2	-	-
TWHI203267:0:T	yes	0	1	-	-	-	0	1
TWHI218496:0:T	no	0	1	-	-	-	0	1
UMET351160:0:T	yes	-	0	-	-	-	-	0
VCHO:1:F	yes	0	1	5	4	5	0	1
VCHO345073:0:T	no	5	4	0	1	0	5	4
VFIS312309:1:T	yes	-	-	69	0	68	-	-
VPAR223926:0:T	yes	-	-	0	2	1	-	-
VVUL196600:1:T	yes	5	4	0	1	0	5	4
VVUL216895:0:T	no	5	4	0	1	0	5	4
YENT393305:1:T	yes	-	-	0	2	-	-	-
YPES187410:5:T	no	0	-	767	770	-	0	-
YPES214092:3:T	no	721	-	205	0	-	721	-
YPES349746:2:T	no	558	-	2	0	-	558	-
YPES360102:3:T	yes	765	-	2	0	-	765	-
YPES377628:2:T	no	0	-	1428	1424	-	0	-
YPES386656:2:T	no	1054	-	2	0	-	1054	-
YPSE273123:2:T	no	0	-	1821	1819	-	0	-
YPSE349747:2:T	no	1812	-	0	3	-	1812	-