CANDIDATE ID: 264

CANDIDATE ID: 264

NUMBER OF GENES: 7
AVERAGE SCORE:    9.9938990e-1 (range=[0.0,1.0])
AVERAGE MINIMUM BLAST P-VAL:   1.5714341e-34

Gene List
List of organisms containing most genes from the group
    Phylogenetic tree highlighting these organisms (opens new page)
List of organisms containing very few or no genes from the group
List of organisms enriched for group
List of organisms depleted for group
Phylogenetic profile similarity with known pathways
Pairwise genome context scores
Pairwise Blast scores
Pathway or protein complex matches in target organism
Genome context matrix
    Genes and their orthologs in genome browser BioCyc pages



GENE LIST:

- G7891 (idnR) (b4264)
   Products of gene:
     - G7891-MONOMER (IdnR transcriptional regulator)
     - MONOMER0-1301 (IdnR-5-ketogluconate transcriptional dual regulator)
       Regulatees:
        TU00228 (gntKU)
        TU0-4682 (idnDOTR)
        TU0-4681 (idnK)

- EG12631 (gntU) (b3435 (obsolete))
   Products of gene:
     - GNTU-MONOMER (GntU gluconate Gnt transporter)
       Reactions:
        D-gluconate[periplasmic space] + H+[periplasmic space]  ->  D-gluconate[cytosol] + H+[cytosol]

- EG12630 (gntR) (b3438)
   Products of gene:
     - PD03585 (GntR transcriptional repressor)
       Regulatees:
        TU0-4682 (idnDOTR)
        TU0-4681 (idnK)
        TU0-4981 (gntXY)
        TU0-4928 (gntT)
        TU0-4927 (gntT)
        TU00227 (edd-eda)
        TU00229 (gntT)
        TU00228 (gntKU)
     - MONOMER-55 (GntR-gluconate)

- EG12629 (gntK) (b3437)
   Products of gene:
     - GLUCONOKINII-MONOMER (GntK)
     - GLUCONOKINII-CPLX (D-gluconate kinase, thermostable)
       Reactions:
        ATP + D-gluconate  ->  ADP + 6-phospho-D-gluconate + 2 H+
         In pathways
         KETOGLUCONMET-PWY (ketogluconate metabolism)
         PWY-5530 (PWY-5530)
         IDNCAT-PWY (L-idonate degradation)
         GLUCONSUPER-PWY (D-gluconate degradation)

- EG12548 (yjhF) (b4296)
   Products of gene:
     - YJHF-MONOMER (YjhF Gnt tranporter)

- EG12539 (idnT) (b4265)
   Products of gene:
     - YJGT-MONOMER (L-idonate / 5-ketogluconate / gluconate transporter)
       Reactions:
        5-dehydro-D-gluconate[periplasmic space] + H+[periplasmic space]  ->  5-dehydro-D-gluconate[cytosol] + H+[cytosol]
        D-gluconate[periplasmic space] + H+[periplasmic space]  ->  D-gluconate[cytosol] + H+[cytosol]
        L-idonate[periplasmic space] + H+[periplasmic space]  ->  L-idonate[cytosol] + H+[cytosol]

- EG12152 (idnK) (b4268)
   Products of gene:
     - GLUCONOKINI-MONOMER (D-gluconate kinase, thermosensitive)
       Reactions:
        ATP + D-gluconate  ->  ADP + 6-phospho-D-gluconate + 2 H+
         In pathways
         KETOGLUCONMET-PWY (ketogluconate metabolism)
         PWY-5530 (PWY-5530)
         IDNCAT-PWY (L-idonate degradation)
         GLUCONSUPER-PWY (D-gluconate degradation)



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ORGANISMS CONTAINING AT LEAST 6 GENES FROM THE GROUP:

Total number of orgs: 100
Effective number of orgs (counting one per cluster within 468 clusters): 53

Organism list
Homologs in each organism in the list
Features enriched in organism list


Follow (ncbi) link, when present, to find the set of organism features for each organism
Org ID  Org Name  # genes in group found in org  
YPSE349747 ncbi Yersinia pseudotuberculosis IP 317587
YPSE273123 ncbi Yersinia pseudotuberculosis IP 329537
YPES386656 ncbi Yersinia pestis Pestoides F7
YPES377628 ncbi Yersinia pestis Nepal5167
YPES360102 ncbi Yersinia pestis Antiqua7
YPES349746 ncbi Yersinia pestis Angola7
YPES214092 ncbi Yersinia pestis CO927
YPES187410 ncbi Yersinia pestis KIM 107
YENT393305 ncbi Yersinia enterocolitica enterocolitica 80817
XAUT78245 ncbi Xanthobacter autotrophicus Py27
VVUL216895 ncbi Vibrio vulnificus CMCP67
VVUL196600 ncbi Vibrio vulnificus YJ0167
VPAR223926 ncbi Vibrio parahaemolyticus RIMD 22106337
VCHO345073 ncbi Vibrio cholerae O3957
VCHO ncbi Vibrio cholerae O1 biovar El Tor str. N169617
STYP99287 ncbi Salmonella enterica enterica serovar Typhimurium str. LT27
SSON300269 ncbi Shigella sonnei Ss0467
SPRO399741 ncbi Serratia proteamaculans 5687
SHIGELLA ncbi Shigella flexneri 2a str. 2457T7
SGLO343509 ncbi Sodalis glossinidius morsitans7
SFLE373384 ncbi Shigella flexneri 5 str. 84017
SFLE198214 ncbi Shigella flexneri 2a str. 3017
SENT454169 ncbi Salmonella enterica enterica serovar Heidelberg str. SL4767
SENT321314 ncbi Salmonella enterica enterica serovar Choleraesuis str. SC-B677
SENT295319 ncbi Salmonella enterica enterica serovar Paratyphi A str. ATCC 91507
SENT220341 ncbi Salmonella enterica enterica serovar Typhi str. CT187
SENT209261 ncbi Salmonella enterica enterica serovar Typhi str. Ty27
SDYS300267 ncbi Shigella dysenteriae Sd1977
SDEG203122 ncbi Saccharophagus degradans 2-407
SCO ncbi Streptomyces coelicolor A3(2)7
SBOY300268 ncbi Shigella boydii Sb2277
SBAL402882 ncbi Shewanella baltica OS1857
SBAL399599 ncbi Shewanella baltica OS1957
SAVE227882 ncbi Streptomyces avermitilis MA-46806
RSOL267608 ncbi Ralstonia solanacearum GMI10007
RMET266264 ncbi Ralstonia metallidurans CH347
REUT381666 ncbi Ralstonia eutropha H167
REUT264198 ncbi Ralstonia eutropha JMP1347
PSYR223283 ncbi Pseudomonas syringae pv. tomato str. DC30007
PSYR205918 ncbi Pseudomonas syringae pv. syringae B728a7
PPUT76869 ncbi Pseudomonas putida GB-17
PPUT351746 ncbi Pseudomonas putida F17
PPUT160488 ncbi Pseudomonas putida KT24407
PMUL272843 ncbi Pasteurella multocida multocida Pm707
PLUM243265 ncbi Photorhabdus luminescens laumondii TTO17
PHAL326442 ncbi Pseudoalteromonas haloplanktis TAC1257
PFLU220664 ncbi Pseudomonas fluorescens Pf-57
PFLU216595 ncbi Pseudomonas fluorescens SBW257
PFLU205922 ncbi Pseudomonas fluorescens Pf0-17
PENT384676 ncbi Pseudomonas entomophila L487
PATL342610 ncbi Pseudoalteromonas atlantica T6c6
PAER208964 ncbi Pseudomonas aeruginosa PAO17
PAER208963 ncbi Pseudomonas aeruginosa UCBPP-PA147
MSUC221988 ncbi Mannheimia succiniciproducens MBEL55E7
MSP400668 ncbi Marinomonas sp. MWYL16
KPNE272620 ncbi Klebsiella pneumoniae pneumoniae MGH 785787
HSOM228400 ncbi Haemophilus somnus 23367
HSOM205914 ncbi Haemophilus somnus 129PT7
ESP42895 Enterobacter sp.7
EFER585054 ncbi Escherichia fergusonii ATCC 354697
ECOO157 ncbi Escherichia coli O157:H7 EDL9337
ECOL83334 Escherichia coli O157:H77
ECOL585397 ncbi Escherichia coli ED1a7
ECOL585057 ncbi Escherichia coli IAI397
ECOL585056 ncbi Escherichia coli UMN0267
ECOL585055 ncbi Escherichia coli 559897
ECOL585035 ncbi Escherichia coli S887
ECOL585034 ncbi Escherichia coli IAI17
ECOL481805 ncbi Escherichia coli ATCC 87397
ECOL469008 ncbi Escherichia coli BL21(DE3)7
ECOL439855 ncbi Escherichia coli SMS-3-57
ECOL413997 ncbi Escherichia coli B str. REL6067
ECOL409438 ncbi Escherichia coli SE117
ECOL405955 ncbi Escherichia coli APEC O17
ECOL364106 ncbi Escherichia coli UTI897
ECOL362663 ncbi Escherichia coli 5367
ECOL331111 ncbi Escherichia coli E24377A7
ECOL316407 ncbi Escherichia coli K-12 substr. W31107
ECOL199310 ncbi Escherichia coli CFT0737
ECAR218491 ncbi Pectobacterium atrosepticum SCRI10437
CSAL290398 ncbi Chromohalobacter salexigens DSM 30437
CJAP155077 Cellvibrio japonicus7
BVIE269482 ncbi Burkholderia vietnamiensis G47
BTHA271848 ncbi Burkholderia thailandensis E2647
BSP36773 Burkholderia sp.7
BPSE320373 ncbi Burkholderia pseudomallei 6687
BPSE320372 ncbi Burkholderia pseudomallei 1710b7
BPSE272560 ncbi Burkholderia pseudomallei K962437
BMAL320389 ncbi Burkholderia mallei NCTC 102477
BMAL320388 ncbi Burkholderia mallei SAVP17
BMAL243160 ncbi Burkholderia mallei ATCC 233447
BCEN331272 ncbi Burkholderia cenocepacia HI24247
BCEN331271 ncbi Burkholderia cenocepacia AU 10547
BAMB398577 ncbi Burkholderia ambifaria MC40-67
BAMB339670 ncbi Burkholderia ambifaria AMMD7
ASP1667 Arthrobacter sp.6
ASAL382245 ncbi Aeromonas salmonicida salmonicida A4497
APLE434271 ncbi Actinobacillus pleuropneumoniae serovar 3 str. JL037
APLE416269 ncbi Actinobacillus pleuropneumoniae L207
AHYD196024 Aeromonas hydrophila dhakensis7


Names of the homologs of the genes in the group in each of these orgs
  G7891   EG12631   EG12630   EG12629   EG12548   EG12539   EG12152   
YPSE349747 YPSIP31758_1473YPSIP31758_4021YPSIP31758_4022YPSIP31758_4020YPSIP31758_4021YPSIP31758_4021YPSIP31758_1469
YPSE273123 YPTB2569YPTB3797YPTB3798YPTB3796YPTB3797YPTB3797YPTB2572
YPES386656 YPDSF_1947YPDSF_3319YPDSF_3320YPDSF_3318YPDSF_3319YPDSF_3319YPDSF_1950
YPES377628 YPN_2132YPN_3603YPN_3604YPN_3602YPN_3603YPN_3603YPN_2135
YPES360102 YPA_2029YPA_3783YPA_3784YPA_3782YPA_3783YPA_3783YPA_2032
YPES349746 YPANGOLA_A1796YPANGOLA_A4105YPANGOLA_A4104YPANGOLA_A4107YPANGOLA_A4105YPANGOLA_A4105YPANGOLA_A1801
YPES214092 YPO2537YPO3954YPO3955YPO3953YPO3954YPO3954YPO2540
YPES187410 Y1650Y3875Y3873Y3876Y3875Y3875Y1646
YENT393305 YE1364YE4021YE4022YE4020YE4021YE4021YE1362
XAUT78245 XAUT_1029XAUT_1234XAUT_1236XAUT_1235XAUT_1234XAUT_1234XAUT_1235
VVUL216895 VV1_1098VV1_1101VV1_1098VV1_1100VV1_1101VV1_1101VV1_1100
VVUL196600 VV0057VV0061VV0057VV0060VV0061VV0061VV0060
VPAR223926 VP0058VP0064VP0058VP0063VP0064VP0064VP0063
VCHO345073 VC0395_A2667VC0395_A2664VC0395_A2667VC0395_A2665VC0395_A2664VC0395_A2664VC0395_A2665
VCHO VC0289VC0286VC0289VC0287VC0286VC0286VC0287
STYP99287 STM4481STM3541STM3543STM3542STM4482STM4482STM4485
SSON300269 SSO_4449SSO_3678SSO_3680SSO_3679SSO_4450SSO_4450SSO_4453
SPRO399741 SPRO_3289SPRO_4498SPRO_4652SPRO_4497SPRO_4651SPRO_4651SPRO_4497
SHIGELLA GNTRGNTUGNTRGNTKGNTTGNTTGNTK
SGLO343509 SG2333SG2332SG2333SG2151SG2332SG2332SG2151
SFLE373384 SFV_3446SFV_3423SFV_3446SFV_3445SFV_3423SFV_3423SFV_3445
SFLE198214 AAN44920.1AAN44918.1AAN44920.1AAN44919.1AAN44899.1AAN44899.1AAN44919.1
SENT454169 SEHA_C4885SEHA_C3850SEHA_C3852SEHA_C3851SEHA_C4886SEHA_C4886SEHA_C4889
SENT321314 SCH_4337SCH_3471SCH_3473SCH_3472SCH_4338SCH_4338SCH_4341
SENT295319 SPA4281SPA3392SPA3394SPA3393SPA4282SPA4282SPA4285
SENT220341 STY4819STY4270STY4268STY4269STY4284STY4284STY4269
SENT209261 T4515T3979T3978T3980T3994T3994T3980
SDYS300267 SDY_3589SDY_3587SDY_3589SDY_3588SDY_3661SDY_3661SDY_3588
SDEG203122 SDE_0905SDE_1892SDE_0905SDE_0904SDE_1892SDE_1892SDE_0904
SCO SCO0360SCO4991SCO0360SCO1679SCO4991SCO4991SCO1679
SBOY300268 SBO_3435SBO_3433SBO_3435SBO_3434SBO_3404SBO_3404SBO_3434
SBAL402882 SHEW185_4058SHEW185_4057SHEW185_4058SHEW185_4056SHEW185_4057SHEW185_4057SHEW185_4056
SBAL399599 SBAL195_4176SBAL195_4175SBAL195_4176SBAL195_4174SBAL195_4175SBAL195_4175SBAL195_4174
SAVE227882 SAV6628SAV5257SAV6629SAV6628SAV6628SAV6629
RSOL267608 RSP1616RSP1189RSC1790RSC0441RSP1189RSP1189RSC0441
RMET266264 RMET_4839RMET_4774RMET_4839RMET_1046RMET_4774RMET_4774RMET_1046
REUT381666 H16_B1599H16_B1207H16_B1599H16_A1179H16_B1207H16_B1207H16_A1179
REUT264198 REUT_B4642REUT_B4018REUT_C6093REUT_A1082REUT_B4018REUT_B4018REUT_A1082
PSYR223283 PSPTO_3563PSPTO_3565PSPTO_3563PSPTO_3564PSPTO_3565PSPTO_3565PSPTO_3564
PSYR205918 PSYR_3336PSYR_3338PSYR_3336PSYR_3337PSYR_3338PSYR_3338PSYR_3337
PPUT76869 PPUTGB1_2525PPUTGB1_2523PPUTGB1_2525PPUTGB1_2524PPUTGB1_2523PPUTGB1_2523PPUTGB1_2524
PPUT351746 PPUT_2347PPUT_2345PPUT_2347PPUT_2346PPUT_2345PPUT_2345PPUT_2346
PPUT160488 PP_3415PP_3417PP_3415PP_3416PP_3417PP_3417PP_3416
PMUL272843 PM0791PM0793PM0791PM0792PM0793PM0793PM0792
PLUM243265 PLU0496PLU0498PLU0496PLU0497PLU1969PLU0498PLU0497
PHAL326442 PSHAB0478PSHAB0479PSHAB0478PSHAB0480PSHAB0479PSHAB0479PSHAB0480
PFLU220664 PFL_4581PFL_4579PFL_4581PFL_4580PFL_4579PFL_4579PFL_4580
PFLU216595 PFLU4812PFLU4810PFLU4812PFLU4811PFLU4810PFLU4810PFLU4811
PFLU205922 PFL_4337PFL_4335PFL_4337PFL_4336PFL_4335PFL_4335PFL_4336
PENT384676 PSEEN2422PSEEN2420PSEEN2422PSEEN2421PSEEN2420PSEEN2420PSEEN2421
PATL342610 PATL_2267PATL_3272PATL_3644PATL_2267PATL_2267PATL_3644
PAER208964 PA2320PA2322PA2320PA2321PA2322PA2322PA2321
PAER208963 PA14_34660PA14_34630PA14_34660PA14_34640PA14_34630PA14_34630PA14_34640
MSUC221988 MS1242MS1977MS1242MS0957MS0688MS1977MS0957
MSP400668 MMWYL1_0694MMWYL1_2554MMWYL1_0694MMWYL1_0695MMWYL1_2554MMWYL1_0695
KPNE272620 GKPORF_B4319GKPORF_B3144GKPORF_B3146GKPORF_B3145GKPORF_B3127GKPORF_B3127GKPORF_B4317
HSOM228400 HSM_0170HSM_0701HSM_0170HSM_0704HSM_0701HSM_0701HSM_0704
HSOM205914 HS_0298HS_0378HS_0298HS_0379HS_1717HS_1717HS_0379
ESP42895 ENT638_3846ENT638_3844ENT638_3846ENT638_3845ENT638_3828ENT638_3828ENT638_3845
EFER585054 EFER_3414EFER_3412EFER_3414EFER_3413EFER_3384EFER_3384EFER_3413
ECOO157 GNTRGNTUGNTRGNTKGNTTGNTTGNTK
ECOL83334 ECS4287ECS4285ECS4287ECS4286ECS4257ECS4257ECS4286
ECOL585397 ECED1_5117ECED1_4110ECED1_4112ECED1_4111ECED1_4076ECED1_4076ECED1_5122
ECOL585057 ECIAI39_4737ECIAI39_3918ECIAI39_3920ECIAI39_3919ECIAI39_4738ECIAI39_4738ECIAI39_4741
ECOL585056 ECUMN_4796ECUMN_3899ECUMN_3901ECUMN_3900ECUMN_4895ECUMN_4797ECUMN_4800
ECOL585055 EC55989_4822EC55989_3845EC55989_3847EC55989_3846EC55989_4823EC55989_4823EC55989_4826
ECOL585035 ECS88_3835ECS88_3833ECS88_3835ECS88_3834ECS88_4907ECS88_3804ECS88_3834
ECOL585034 ECIAI1_3583ECIAI1_3581ECIAI1_3583ECIAI1_3582ECIAI1_3559ECIAI1_3559ECIAI1_3582
ECOL481805 ECOLC_0275ECOLC_0277ECOLC_0275ECOLC_0276ECOLC_0298ECOLC_0298ECOLC_0276
ECOL469008 ECBD_3772ECBD_0307ECBD_0305ECBD_0306ECBD_0330ECBD_3771ECBD_3768
ECOL439855 ECSMS35_4745ECSMS35_3719ECSMS35_3721ECSMS35_3720ECSMS35_4746ECSMS35_4746ECSMS35_4749
ECOL413997 ECB_04130ECB_03287ECB_03289ECB_03288ECB_04131ECB_04131ECB_04134
ECOL409438 ECSE_3706ECSE_3704ECSE_3706ECSE_3705ECSE_3682ECSE_3682ECSE_3705
ECOL405955 APECO1_2130APECO1_3022APECO1_3020APECO1_3021APECO1_2129APECO1_2129APECO1_2126
ECOL364106 UTI89_C4871UTI89_C3944UTI89_C3946UTI89_C3945UTI89_C4872UTI89_C4872UTI89_C4875
ECOL362663 ECP_4513ECP_3531ECP_3533ECP_3532ECP_4514ECP_4514ECP_3532
ECOL331111 ECE24377A_3916ECE24377A_3914ECE24377A_3916ECE24377A_3915ECE24377A_3891ECE24377A_3891ECE24377A_3915
ECOL316407 ECK4257:JW4221:B4264ECK3421:JW5686:B4476ECK3423:JW5946:B3438ECK3422:JW3400:B3437ECK4285:JW4258:B4296ECK4258:JW4222:B4265ECK4261:JW4225:B4268
ECOL199310 C5365C4224C4227C4225C5366C5366C5369
ECAR218491 ECA1838ECA1840ECA1838ECA1839ECA1840ECA1840ECA1839
CSAL290398 CSAL_0927CSAL_0925CSAL_0927CSAL_0926CSAL_0925CSAL_0925CSAL_0926
CJAP155077 CJA_0847CJA_0346CJA_0847CJA_0846CJA_0346CJA_0346CJA_0846
BVIE269482 BCEP1808_5603BCEP1808_0630BCEP1808_5603BCEP1808_0631BCEP1808_0630BCEP1808_0630BCEP1808_0631
BTHA271848 BTH_I2828BTH_I1219BTH_I2828BTH_I1220BTH_I1219BTH_I1219BTH_I1220
BSP36773 BCEP18194_C7624BCEP18194_A3748BCEP18194_A4344BCEP18194_A3749BCEP18194_A3748BCEP18194_A3748BCEP18194_A3749
BPSE320373 BURPS668_1413BURPS668_3404BURPS668_1413BURPS668_3403BURPS668_3404BURPS668_3404BURPS668_3403
BPSE320372 BURPS1710B_A1638BURPS1710B_A3717BURPS1710B_A1638BURPS1710B_A3716BURPS1710B_A3717BURPS1710B_A3717BURPS1710B_A3716
BPSE272560 BPSL1304BPSL2930BPSL1304BPSL2929BPSL2930BPSL2930BPSL2929
BMAL320389 BMA10247_0502BMA10247_2629BMA10247_0502BMA10247_2628BMA10247_2629BMA10247_2629BMA10247_2628
BMAL320388 BMASAVP1_A1216BMASAVP1_A0360BMASAVP1_A1216BMASAVP1_A0359BMASAVP1_A0360BMASAVP1_A0360BMASAVP1_A0359
BMAL243160 BMA_3070BMA_2444BMA_3070BMA_2443BMA_2444BMA_2444BMA_2443
BCEN331272 BCEN2424_6695BCEN2424_0662BCEN2424_6695BCEN2424_0663BCEN2424_0662BCEN2424_0662BCEN2424_0663
BCEN331271 BCEN_6460BCEN_0179BCEN_6460BCEN_0180BCEN_0179BCEN_0179BCEN_0180
BAMB398577 BAMMC406_1382BAMMC406_0583BAMMC406_1117BAMMC406_0584BAMMC406_0583BAMMC406_0583BAMMC406_0584
BAMB339670 BAMB_1342BAMB_0557BAMB_1118BAMB_0558BAMB_0557BAMB_0557BAMB_0558
ASP1667 ARTH_0274ARTH_3688ARTH_0505ARTH_3529ARTH_3529ARTH_0505
ASAL382245 ASA_4107ASA_4111ASA_4107ASA_4110ASA_4111ASA_4111ASA_4110
APLE434271 APJL_1698APJL_1696APJL_1698APJL_1697APJL_1696APJL_1696APJL_1697
APLE416269 APL_1667APL_1665APL_1667APL_1666APL_1665APL_1665APL_1666
AHYD196024 AHA_0290AHA_0286AHA_0290AHA_0287AHA_0286AHA_0286AHA_0287


Organism features enriched in list (features available for 94 out of the 100 orgs in the list)
Feature    Pvalue       Num occurrences in list  Total num occurrences  
Arrangment:Chains 0.0006260592
Arrangment:Pairs 0.009483526112
Arrangment:Singles 0.004467457286
Disease:Bubonic_plague 0.000015366
Disease:Dysentery 0.000015366
Disease:Gastroenteritis 1.388e-61013
Disease:Glanders_and_pneumonia 0.004079733
Disease:Melioidosis 0.004079733
Disease:Plant_rot 0.004079733
Endospores:No 0.000332120211
Endospores:Yes 0.0034712253
GC_Content_Range4:0-40 4.626e-182213
GC_Content_Range4:40-60 6.214e-1063224
GC_Content_Range7:30-40 7.667e-132166
GC_Content_Range7:50-60 7.570e-837107
Genome_Size_Range5:2-4 6.371e-108197
Genome_Size_Range5:4-6 7.036e-1563184
Genome_Size_Range5:6-10 2.816e-82347
Genome_Size_Range9:2-3 0.00003426120
Genome_Size_Range9:3-4 0.0000678277
Genome_Size_Range9:4-5 0.00006722996
Genome_Size_Range9:5-6 1.205e-83488
Genome_Size_Range9:6-8 5.660e-82038
Gram_Stain:Gram_Neg 2.223e-1586333
Gram_Stain:Gram_Pos 3.086e-112150
Habitat:Multiple 0.000613242178
Motility:No 8.338e-77151
Motility:Yes 1.201e-766267
Oxygen_Req:Anaerobic 5.713e-81102
Oxygen_Req:Facultative 1.438e-1263201
Pathogenic_in:Animal 0.00258561966
Pathogenic_in:Human 0.000060451213
Pathogenic_in:No 1.813e-617226
Shape:Coccus 3.050e-6182
Shape:Rod 8.207e-1486347
Temp._range:Mesophilic 7.982e-690473



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ORGANISMS CONTAINING AT MOST 1 GENES FROM THE GROUP:

Total number of orgs: 328
Effective number of orgs (counting one per cluster within 468 clusters): 262

Organism list
Homologs in each organism in the list
Features enriched in organism list


Follow (ncbi) link, when present, to find the set of organism features for each organism
Org ID  Org Name  # genes in group found in org  
XFAS405440 ncbi Xylella fastidiosa M120
XFAS183190 ncbi Xylella fastidiosa Temecula10
XFAS160492 ncbi Xylella fastidiosa 9a5c0
WSUC273121 ncbi Wolinella succinogenes DSM 17400
WPIP955 Wolbachia pipientis0
WPIP80849 Wolbachia endosymbiont of Brugia malayi0
UURE95667 Ureaplasma urealyticum serovar 130
UURE95664 Ureaplasma urealyticum serovar 100
UPAR505682 ncbi Ureaplasma parvum serovar 3 str. ATCC 278150
UMET351160 ncbi uncultured methanogenic archaeon RC-I0
TWHI218496 ncbi Tropheryma whipplei TW08/270
TWHI203267 ncbi Tropheryma whipplei Twist0
TVOL273116 ncbi Thermoplasma volcanium GSS10
TTHE300852 ncbi Thermus thermophilus HB80
TTHE262724 ncbi Thermus thermophilus HB270
TROS309801 ncbi Thermomicrobium roseum DSM 51590
TPEN368408 ncbi Thermofilum pendens Hrk 50
TPAL243276 ncbi Treponema pallidum pallidum Nichols0
TKOD69014 ncbi Thermococcus kodakarensis KOD10
TELO197221 ncbi Thermosynechococcus elongatus BP-10
TDEN326298 ncbi Sulfurimonas denitrificans DSM 12510
TDEN292415 ncbi Thiobacillus denitrificans ATCC 252590
TDEN243275 ncbi Treponema denticola ATCC 354050
TCRU317025 ncbi Thiomicrospira crunogena XCL-20
TACI273075 ncbi Thermoplasma acidophilum DSM 17280
SWOL335541 ncbi Syntrophomonas wolfei wolfei Goettingen0
STRO369723 ncbi Salinispora tropica CNB-4400
STOK273063 ncbi Sulfolobus tokodaii 70
STHE322159 ncbi Streptococcus thermophilus LMD-90
STHE299768 ncbi Streptococcus thermophilus CNRZ10660
STHE264199 ncbi Streptococcus thermophilus LMG 183110
SSUI391296 ncbi Streptococcus suis 98HAH330
SSUI391295 ncbi Streptococcus suis 05ZYH330
SSP94122 ncbi Shewanella sp. ANA-30
SSP84588 ncbi Synechococcus sp. WH 81020
SSP64471 ncbi Synechococcus sp. CC93110
SSP387093 ncbi Sulfurovum sp. NBC37-10
SSP321332 ncbi Synechococcus sp. JA-2-3Ba(2-13)0
SSP321327 ncbi Synechococcus sp. JA-3-3Ab0
SSP1148 ncbi Synechocystis sp. PCC 68030
SSP1131 Synechococcus sp. CC96050
SSOL273057 ncbi Sulfolobus solfataricus P20
SSED425104 ncbi Shewanella sediminis HAW-EB30
SRUB309807 ncbi Salinibacter ruber DSM 138551
SPYO370554 ncbi Streptococcus pyogenes MGAS107500
SPYO370553 ncbi Streptococcus pyogenes MGAS20960
SPYO370552 ncbi Streptococcus pyogenes MGAS102700
SPYO370551 ncbi Streptococcus pyogenes MGAS94290
SPYO319701 ncbi Streptococcus pyogenes MGAS61800
SPYO293653 ncbi Streptococcus pyogenes MGAS50050
SPYO286636 ncbi Streptococcus pyogenes MGAS103940
SPYO198466 ncbi Streptococcus pyogenes MGAS3150
SPYO193567 ncbi Streptococcus pyogenes SSI-10
SPYO186103 ncbi Streptococcus pyogenes MGAS82320
SPYO160490 ncbi Streptococcus pyogenes M1 GAS0
SPNE488221 ncbi Streptococcus pneumoniae 705850
SPNE487214 ncbi Streptococcus pneumoniae Hungary19A-60
SPNE487213 ncbi Streptococcus pneumoniae Taiwan19F-141
SPNE171101 ncbi Streptococcus pneumoniae R60
SPNE170187 ncbi Streptococcus pneumoniae G540
SPNE1313 Streptococcus pneumoniae0
SONE211586 ncbi Shewanella oneidensis MR-10
SMUT210007 ncbi Streptococcus mutans UA1590
SMAR399550 ncbi Staphylothermus marinus F10
SLOI323850 ncbi Shewanella loihica PV-40
SGOR29390 Streptococcus gordonii Challis1
SFUM335543 ncbi Syntrophobacter fumaroxidans MPOB0
SELO269084 ncbi Synechococcus elongatus PCC 63010
SDEN318161 ncbi Shewanella denitrificans OS2170
SARE391037 ncbi Salinispora arenicola CNS-2050
SALA317655 ncbi Sphingopyxis alaskensis RB22560
SAGA211110 ncbi Streptococcus agalactiae NEM3160
SAGA208435 ncbi Streptococcus agalactiae 2603V/R0
SAGA205921 ncbi Streptococcus agalactiae A9090
SACI56780 ncbi Syntrophus aciditrophicus SB0
SACI330779 ncbi Sulfolobus acidocaldarius DSM 6390
RXYL266117 ncbi Rubrobacter xylanophilus DSM 99410
RTYP257363 ncbi Rickettsia typhi Wilmington0
RSP357808 ncbi Roseiflexus sp. RS-10
RRIC452659 ncbi Rickettsia rickettsii Iowa0
RRIC392021 ncbi Rickettsia rickettsii Sheila Smith0
RPRO272947 ncbi Rickettsia prowazekii Madrid E0
RMAS416276 ncbi Rickettsia massiliae MTU50
RFEL315456 ncbi Rickettsia felis URRWXCal20
RCON272944 ncbi Rickettsia conorii Malish 70
RCAS383372 ncbi Roseiflexus castenholzii DSM 139410
RCAN293613 ncbi Rickettsia canadensis McKiel0
RBEL391896 ncbi Rickettsia bellii OSU 85-3890
RBEL336407 ncbi Rickettsia bellii RML369-C0
RALB246199 Ruminococcus albus 80
RAKA293614 ncbi Rickettsia akari Hartford0
PTOR263820 ncbi Picrophilus torridus DSM 97900
PTHE370438 ncbi Pelotomaculum thermopropionicum SI0
PSP56811 Psychrobacter sp.1
PSP312153 ncbi Polynucleobacter necessarius asymbioticus QLW-P1DMWA-10
PSP117 Pirellula sp.1
PRUM264731 ncbi Prevotella ruminicola 230
PMAR93060 ncbi Prochlorococcus marinus MIT 92150
PMAR74547 ncbi Prochlorococcus marinus MIT 93130
PMAR74546 ncbi Prochlorococcus marinus MIT 93120
PMAR59920 ncbi Prochlorococcus marinus NATL2A0
PMAR167555 ncbi Prochlorococcus marinus NATL1A0
PMAR167546 ncbi Prochlorococcus marinus MIT 93010
PMAR167542 ncbi Prochlorococcus marinus MIT 95150
PMAR167540 Prochlorococcus marinus pastoris MED4ax0
PMAR167539 ncbi Prochlorococcus marinus marinus CCMP13750
PMAR146891 ncbi Prochlorococcus marinus AS96010
PLUT319225 ncbi Chlorobium luteolum DSM 2730
PISL384616 ncbi Pyrobaculum islandicum DSM 41840
PINT246198 Prevotella intermedia 171
PHOR70601 ncbi Pyrococcus horikoshii OT30
PGIN242619 ncbi Porphyromonas gingivalis W830
PFUR186497 ncbi Pyrococcus furiosus DSM 36380
PCRY335284 ncbi Psychrobacter cryohalolentis K50
PCAR338963 ncbi Pelobacter carbinolicus DSM 23800
PAST100379 Onion yellows phytoplasma0
PARS340102 ncbi Pyrobaculum arsenaticum DSM 135140
PARC259536 ncbi Psychrobacter arcticus 273-40
PAER178306 ncbi Pyrobaculum aerophilum IM20
PABY272844 ncbi Pyrococcus abyssi GE50
OTSU357244 ncbi Orientia tsutsugamushi Boryong0
NSP387092 ncbi Nitratiruptor sp. SB155-20
NSEN222891 ncbi Neorickettsia sennetsu Miyayama0
NPHA348780 ncbi Natronomonas pharaonis DSM 21600
NOCE323261 ncbi Nitrosococcus oceani ATCC 197070
NMUL323848 ncbi Nitrosospira multiformis ATCC 251960
NEUT335283 ncbi Nitrosomonas eutropha C910
NEUR228410 ncbi Nitrosomonas europaea ATCC 197180
NARO279238 ncbi Novosphingobium aromaticivorans DSM 124440
MTUB419947 ncbi Mycobacterium tuberculosis H37Ra0
MTUB336982 ncbi Mycobacterium tuberculosis F110
MTHE349307 ncbi Methanosaeta thermophila PT0
MTHE187420 ncbi Methanothermobacter thermautotrophicus Delta H0
MTBRV ncbi Mycobacterium tuberculosis H37Rv0
MTBCDC ncbi Mycobacterium tuberculosis CDC15510
MSYN262723 ncbi Mycoplasma synoviae 530
MSTA339860 ncbi Methanosphaera stadtmanae DSM 30910
MSED399549 ncbi Metallosphaera sedula DSM 53480
MPUL272635 ncbi Mycoplasma pulmonis UAB CTIP0
MPNE272634 ncbi Mycoplasma pneumoniae M1290
MPEN272633 ncbi Mycoplasma penetrans HF-20
MMYC272632 ncbi Mycoplasma mycoides mycoides SC str. PG10
MMOB267748 ncbi Mycoplasma mobile 163K0
MMAZ192952 ncbi Methanosarcina mazei Go10
MMAR444158 ncbi Methanococcus maripaludis C60
MMAR426368 ncbi Methanococcus maripaludis C70
MMAR402880 ncbi Methanococcus maripaludis C50
MMAR368407 ncbi Methanoculleus marisnigri JR10
MMAR267377 ncbi Methanococcus maripaludis S20
MMAG342108 ncbi Magnetospirillum magneticum AMB-10
MLEP272631 ncbi Mycobacterium leprae TN0
MLAB410358 ncbi Methanocorpusculum labreanum Z0
MKAN190192 ncbi Methanopyrus kandleri AV190
MJAN243232 ncbi Methanocaldococcus jannaschii DSM 26610
MHYO295358 ncbi Mycoplasma hyopneumoniae 2320
MHYO262722 ncbi Mycoplasma hyopneumoniae 74480
MHYO262719 ncbi Mycoplasma hyopneumoniae J0
MHUN323259 ncbi Methanospirillum hungatei JF-10
MGEN243273 ncbi Mycoplasma genitalium G370
MFLO265311 ncbi Mesoplasma florum L10
MCAP340047 ncbi Mycoplasma capricolum capricolum ATCC 273430
MCAP243233 ncbi Methylococcus capsulatus Bath0
MBUR259564 ncbi Methanococcoides burtonii DSM 62420
MBOV410289 ncbi Mycobacterium bovis BCG str. Pasteur 1173P20
MBOV233413 ncbi Mycobacterium bovis AF2122/970
MBAR269797 ncbi Methanosarcina barkeri Fusaro0
MART243272 ncbi Mycoplasma arthritidis 158L3-10
MAQU351348 ncbi Marinobacter aquaeolei VT80
MAER449447 ncbi Microcystis aeruginosa NIES-8430
MAEO419665 ncbi Methanococcus aeolicus Nankai-30
MACE188937 ncbi Methanosarcina acetivorans C2A0
LXYL281090 ncbi Leifsonia xyli xyli CTCB070
LWEL386043 ncbi Listeria welshimeri serovar 6b str. SLCC53340
LPNE400673 ncbi Legionella pneumophila Corby0
LPNE297246 ncbi Legionella pneumophila Paris0
LPNE297245 ncbi Legionella pneumophila Lens0
LPNE272624 ncbi Legionella pneumophila pneumophila Philadelphia 10
LMON265669 ncbi Listeria monocytogenes 4b F23651
LMON169963 ncbi Listeria monocytogenes EGD-e0
LLAC272623 ncbi Lactococcus lactis lactis Il14031
LLAC272622 ncbi Lactococcus lactis cremoris SK111
LJOH257314 ncbi Lactobacillus johnsonii NCC 5330
LINT363253 ncbi Lawsonia intracellularis PHE/MN1-000
LINT267671 ncbi Leptospira interrogans serovar Copenhageni str. Fiocruz L1-1300
LINT189518 ncbi Leptospira interrogans serovar Lai str. 566010
LINN272626 ncbi Listeria innocua Clip112620
LHEL405566 ncbi Lactobacillus helveticus DPC 45710
LGAS324831 ncbi Lactobacillus gasseri ATCC 333231
LDEL390333 ncbi Lactobacillus delbrueckii bulgaricus ATCC 118420
LDEL321956 ncbi Lactobacillus delbrueckii bulgaricus ATCC BAA-3650
LBOR355277 ncbi Leptospira borgpetersenii serovar Hardjo-bovis JB1970
LBOR355276 ncbi Leptospira borgpetersenii serovar Hardjo-bovis L5500
LBIF456481 ncbi Leptospira biflexa serovar Patoc strain Patoc 1 (Paris)0
LBIF355278 ncbi Leptospira biflexa serovar Patoc strain Patoc 1 (Ames)0
LACI272621 ncbi Lactobacillus acidophilus NCFM0
JSP375286 ncbi Janthinobacterium sp. Marseille0
ILOI283942 ncbi Idiomarina loihiensis L2TR0
IHOS453591 ncbi Ignicoccus hospitalis KIN4/I0
HWAL362976 ncbi Haloquadratum walsbyi DSM 167900
HSP64091 ncbi Halobacterium sp. NRC-10
HSAL478009 ncbi Halobacterium salinarum R10
HPYL85963 ncbi Helicobacter pylori J990
HPYL357544 ncbi Helicobacter pylori HPAG10
HPY ncbi Helicobacter pylori 266950
HNEP81032 Hyphomonas neptunium0
HMUK485914 ncbi Halomicrobium mukohataei DSM 122860
HMAR272569 ncbi Haloarcula marismortui ATCC 430490
HINF374930 ncbi Haemophilus influenzae PittEE1
HINF281310 ncbi Haemophilus influenzae 86-028NP1
HHEP235279 ncbi Helicobacter hepaticus ATCC 514490
HHAL349124 ncbi Halorhodospira halophila SL10
HDUC233412 ncbi Haemophilus ducreyi 35000HP0
HBUT415426 ncbi Hyperthermus butylicus DSM 54560
HARS204773 ncbi Herminiimonas arsenicoxydans0
HACI382638 ncbi Helicobacter acinonychis Sheeba0
GURA351605 ncbi Geobacter uraniireducens Rf40
GSUL243231 ncbi Geobacter sulfurreducens PCA0
GMET269799 ncbi Geobacter metallireducens GS-150
GFOR411154 ncbi Gramella forsetii KT08030
FTUL458234 ncbi Francisella tularensis holarctica FTNF002-000
FTUL418136 ncbi Francisella tularensis tularensis WY96-34180
FTUL401614 ncbi Francisella novicida U1120
FTUL393115 ncbi Francisella tularensis tularensis FSC1980
FTUL393011 ncbi Francisella tularensis holarctica OSU180
FTUL351581 Francisella tularensis holarctica FSC2000
FSUC59374 ncbi Fibrobacter succinogenes succinogenes S850
FSP1855 Frankia sp. EAN1pec0
FSP106370 ncbi Frankia sp. CcI30
FRANT ncbi Francisella tularensis tularensis SCHU S40
FPHI484022 ncbi Francisella philomiragia philomiragia ATCC 250170
FMAG334413 ncbi Finegoldia magna ATCC 293280
FALN326424 ncbi Frankia alni ACN14a0
ERUM302409 ncbi Ehrlichia ruminantium Gardel0
ERUM254945 ncbi Ehrlichia ruminantium Welgevonden0
ELIT314225 ncbi Erythrobacter litoralis HTCC25940
EFAE226185 ncbi Enterococcus faecalis V5831
ECHA205920 ncbi Ehrlichia chaffeensis Arkansas0
ECAN269484 ncbi Ehrlichia canis Jake0
DVUL882 ncbi Desulfovibrio vulgaris Hildenborough0
DSP255470 ncbi Dehalococcoides sp. CBDB10
DSP216389 ncbi Dehalococcoides sp. BAV10
DRED349161 ncbi Desulfotomaculum reducens MI-10
DPSY177439 ncbi Desulfotalea psychrophila LSv540
DOLE96561 ncbi Desulfococcus oleovorans Hxd30
DNOD246195 ncbi Dichelobacter nodosus VCS1703A0
DHAF138119 ncbi Desulfitobacterium hafniense Y510
DETH243164 ncbi Dehalococcoides ethenogenes 1950
DDES207559 ncbi Desulfovibrio desulfuricans desulfuricans G200
DARO159087 ncbi Dechloromonas aromatica RCB0
CVES412965 ncbi Candidatus Vesicomyosocius okutanii HA0
CTRA471473 ncbi Chlamydia trachomatis L2b/UCH-1/proctitis0
CTRA471472 ncbi Chlamydia trachomatis 434/Bu0
CTEP194439 ncbi Chlorobium tepidum TLS0
CSUL444179 ncbi Candidatus Sulcia muelleri GWSS0
CRUT413404 ncbi Candidatus Ruthia magnifica Cm (Calyptogena magnifica)0
CPRO264201 ncbi Candidatus Protochlamydia amoebophila UWE250
CPNE182082 ncbi Chlamydophila pneumoniae TW-1830
CPNE138677 ncbi Chlamydophila pneumoniae J1380
CPNE115713 ncbi Chlamydophila pneumoniae CWL0290
CPNE115711 ncbi Chlamydophila pneumoniae AR390
CPEL335992 ncbi Candidatus Pelagibacter ubique HTCC10620
CMUR243161 ncbi Chlamydia muridarum Nigg0
CMET456442 ncbi Candidatus Methanoregula boonei 6A80
CMAQ397948 ncbi Caldivirga maquilingensis IC-1670
CKOR374847 ncbi Candidatus Korarchaeum cryptofilum OPF80
CJEJ407148 ncbi Campylobacter jejuni jejuni 811160
CJEJ360109 ncbi Campylobacter jejuni doylei 269.970
CJEJ354242 ncbi Campylobacter jejuni jejuni 81-1760
CJEJ195099 ncbi Campylobacter jejuni RM12210
CJEJ192222 ncbi Campylobacter jejuni jejuni NCTC 111680
CHYD246194 ncbi Carboxydothermus hydrogenoformans Z-29010
CHOM360107 ncbi Campylobacter hominis ATCC BAA-3810
CFET360106 ncbi Campylobacter fetus fetus 82-400
CFEL264202 ncbi Chlamydophila felis Fe/C-560
CDES477974 ncbi Candidatus Desulforudis audaxviator MP104C0
CCUR360105 ncbi Campylobacter curvus 525.920
CCON360104 ncbi Campylobacter concisus 138260
CCHL340177 ncbi Chlorobium chlorochromatii CaD30
CCAV227941 ncbi Chlamydophila caviae GPIC0
CBUR434922 ncbi Coxiella burnetii Dugway 5J108-1110
CBUR360115 ncbi Coxiella burnetii RSA 3310
CBUR227377 ncbi Coxiella burnetii RSA 4930
CBLO291272 ncbi Candidatus Blochmannia pennsylvanicus BPEN0
CBLO203907 ncbi Candidatus Blochmannia floridanus0
CAULO ncbi Caulobacter crescentus CB150
CABO218497 ncbi Chlamydophila abortus S26/30
BTUR314724 ncbi Borrelia turicatae 91E1350
BTRI382640 ncbi Bartonella tribocorum CIP 1054760
BTHE226186 ncbi Bacteroides thetaiotaomicron VPI-54820
BSUI470137 ncbi Brucella suis ATCC 234450
BSUI204722 ncbi Brucella suis 13300
BSP107806 ncbi Buchnera aphidicola APS (Acyrthosiphon pisum)0
BQUI283165 ncbi Bartonella quintana Toulouse0
BPER257313 ncbi Bordetella pertussis Tohama I0
BOVI236 Brucella ovis0
BMEL359391 ncbi Brucella melitensis biovar Abortus 23080
BMEL224914 ncbi Brucella melitensis bv. 1 str. 16M0
BHER314723 ncbi Borrelia hermsii DAH0
BHEN283166 ncbi Bartonella henselae Houston-10
BGAR290434 ncbi Borrelia garinii PBi0
BFRA295405 ncbi Bacteroides fragilis YCH461
BFRA272559 ncbi Bacteroides fragilis NCTC 93431
BCIC186490 Candidatus Baumannia cicadellinicola0
BCAN483179 ncbi Brucella canis ATCC 233650
BBUR224326 ncbi Borrelia burgdorferi B310
BBAC360095 ncbi Bartonella bacilliformis KC5830
BBAC264462 ncbi Bdellovibrio bacteriovorus HD1000
BAPH372461 ncbi Buchnera aphidicola Cc (Cinara cedri)0
BAPH198804 ncbi Buchnera aphidicola Sg (Schizaphis graminum)0
BAFZ390236 ncbi Borrelia afzelii PKo0
BABO262698 ncbi Brucella abortus bv. 1 str. 9-9410
AYEL322098 ncbi Aster yellows witches-broom phytoplasma AYWB0
AURANTIMONAS Aurantimonas manganoxydans SI85-9A10
ASP76114 ncbi Aromatoleum aromaticum EbN10
ASP62928 ncbi Azoarcus sp. BH720
APHA212042 ncbi Anaplasma phagocytophilum HZ0
APER272557 ncbi Aeropyrum pernix K10
ANAE240017 Actinomyces oris MG10
AMAR234826 ncbi Anaplasma marginale St. Maries0
ALAI441768 ncbi Acholeplasma laidlawii PG-8A0
AFUL224325 ncbi Archaeoglobus fulgidus DSM 43040
AFER243159 ncbi Acidithiobacillus ferrooxidans ATCC 232700
AEHR187272 ncbi Alkalilimnicola ehrlichii MLHE-10
ADEH290397 ncbi Anaeromyxobacter dehalogenans 2CP-C0
ACEL351607 ncbi Acidothermus cellulolyticus 11B0
ABUT367737 ncbi Arcobacter butzleri RM40180
ABOR393595 ncbi Alcanivorax borkumensis SK20
AAEO224324 ncbi Aquifex aeolicus VF50


Names of the homologs of the genes in the group in each of these orgs
  G7891   EG12631   EG12630   EG12629   EG12548   EG12539   EG12152   
XFAS405440
XFAS183190
XFAS160492
WSUC273121
WPIP955
WPIP80849
UURE95667
UURE95664
UPAR505682
UMET351160
TWHI218496
TWHI203267
TVOL273116
TTHE300852
TTHE262724
TROS309801
TPEN368408
TPAL243276
TKOD69014
TELO197221
TDEN326298
TDEN292415
TDEN243275
TCRU317025
TACI273075
SWOL335541
STRO369723
STOK273063
STHE322159
STHE299768
STHE264199
SSUI391296
SSUI391295
SSP94122
SSP84588
SSP64471
SSP387093
SSP321332
SSP321327
SSP1148
SSP1131
SSOL273057
SSED425104
SRUB309807 SRU_2839
SPYO370554
SPYO370553
SPYO370552
SPYO370551
SPYO319701
SPYO293653
SPYO286636
SPYO198466
SPYO193567
SPYO186103
SPYO160490
SPNE488221
SPNE487214
SPNE487213 SPT_0377
SPNE171101
SPNE170187
SPNE1313
SONE211586
SMUT210007
SMAR399550
SLOI323850
SGOR29390 SGO_0773
SFUM335543
SELO269084
SDEN318161
SARE391037
SALA317655
SAGA211110
SAGA208435
SAGA205921
SACI56780
SACI330779
RXYL266117
RTYP257363
RSP357808
RRIC452659
RRIC392021
RPRO272947
RMAS416276
RFEL315456
RCON272944
RCAS383372
RCAN293613
RBEL391896
RBEL336407
RALB246199
RAKA293614
PTOR263820
PTHE370438
PSP56811 PSYCPRWF_1371
PSP312153
PSP117 RB7625
PRUM264731
PMAR93060
PMAR74547
PMAR74546
PMAR59920
PMAR167555
PMAR167546
PMAR167542
PMAR167540
PMAR167539
PMAR146891
PLUT319225
PISL384616
PINT246198 PIN_A0193
PHOR70601
PGIN242619
PFUR186497
PCRY335284
PCAR338963
PAST100379
PARS340102
PARC259536
PAER178306
PABY272844
OTSU357244
NSP387092
NSEN222891
NPHA348780
NOCE323261
NMUL323848
NEUT335283
NEUR228410
NARO279238
MTUB419947
MTUB336982
MTHE349307
MTHE187420
MTBRV
MTBCDC
MSYN262723
MSTA339860
MSED399549
MPUL272635
MPNE272634
MPEN272633
MMYC272632
MMOB267748
MMAZ192952
MMAR444158
MMAR426368
MMAR402880
MMAR368407
MMAR267377
MMAG342108
MLEP272631
MLAB410358
MKAN190192
MJAN243232
MHYO295358
MHYO262722
MHYO262719
MHUN323259
MGEN243273
MFLO265311
MCAP340047
MCAP243233
MBUR259564
MBOV410289
MBOV233413
MBAR269797
MART243272
MAQU351348
MAER449447
MAEO419665
MACE188937
LXYL281090
LWEL386043
LPNE400673
LPNE297246
LPNE297245
LPNE272624
LMON265669 LMOF2365_0266
LMON169963
LLAC272623 L0143
LLAC272622 LACR_1812
LJOH257314
LINT363253
LINT267671
LINT189518
LINN272626
LHEL405566
LGAS324831 LGAS_0436
LDEL390333
LDEL321956
LBOR355277
LBOR355276
LBIF456481
LBIF355278
LACI272621
JSP375286
ILOI283942
IHOS453591
HWAL362976
HSP64091
HSAL478009
HPYL85963
HPYL357544
HPY
HNEP81032
HMUK485914
HMAR272569
HINF374930 CGSHIEE_00460
HINF281310 NTHI0634
HHEP235279
HHAL349124
HDUC233412
HBUT415426
HARS204773
HACI382638
GURA351605
GSUL243231
GMET269799
GFOR411154
FTUL458234
FTUL418136
FTUL401614
FTUL393115
FTUL393011
FTUL351581
FSUC59374
FSP1855
FSP106370
FRANT
FPHI484022
FMAG334413
FALN326424
ERUM302409
ERUM254945
ELIT314225
EFAE226185 EF_0172
ECHA205920
ECAN269484
DVUL882
DSP255470
DSP216389
DRED349161
DPSY177439
DOLE96561
DNOD246195
DHAF138119
DETH243164
DDES207559
DARO159087
CVES412965
CTRA471473
CTRA471472
CTEP194439
CSUL444179
CRUT413404
CPRO264201
CPNE182082
CPNE138677
CPNE115713
CPNE115711
CPEL335992
CMUR243161
CMET456442
CMAQ397948
CKOR374847
CJEJ407148
CJEJ360109
CJEJ354242
CJEJ195099
CJEJ192222
CHYD246194
CHOM360107
CFET360106
CFEL264202
CDES477974
CCUR360105
CCON360104
CCHL340177
CCAV227941
CBUR434922
CBUR360115
CBUR227377
CBLO291272
CBLO203907
CAULO
CABO218497
BTUR314724
BTRI382640
BTHE226186
BSUI470137
BSUI204722
BSP107806
BQUI283165
BPER257313
BOVI236
BMEL359391
BMEL224914
BHER314723
BHEN283166
BGAR290434
BFRA295405 BF3308
BFRA272559 BF3147
BCIC186490
BCAN483179
BBUR224326
BBAC360095
BBAC264462
BAPH372461
BAPH198804
BAFZ390236
BABO262698
AYEL322098
AURANTIMONAS
ASP76114
ASP62928
APHA212042
APER272557
ANAE240017
AMAR234826
ALAI441768
AFUL224325
AFER243159
AEHR187272
ADEH290397
ACEL351607
ABUT367737
ABOR393595
AAEO224324


Organism features enriched in list (features available for 308 out of the 328 orgs in the list)
Feature    Pvalue       Num occurrences in list  Total num occurrences  
Arrangment:Clusters 0.0000438117
Arrangment:Pairs 5.287e-932112
Disease:Pharyngitis 0.005810388
Disease:Wide_range_of_infections 0.00082121111
Disease:bronchitis_and_pneumonitis 0.005810388
Endospores:No 0.0000344134211
Endospores:Yes 3.409e-10753
GC_Content_Range4:0-40 3.947e-10148213
GC_Content_Range4:60-100 5.516e-1143145
GC_Content_Range7:30-40 7.608e-8116166
GC_Content_Range7:60-70 1.786e-1039134
Genome_Size_Range5:0-2 2.599e-41148155
Genome_Size_Range5:2-4 0.0014079120197
Genome_Size_Range5:4-6 4.257e-2738184
Genome_Size_Range5:6-10 9.232e-14247
Genome_Size_Range9:0-1 1.877e-82727
Genome_Size_Range9:1-2 5.776e-31121128
Genome_Size_Range9:2-3 0.007675574120
Genome_Size_Range9:4-5 1.069e-92496
Genome_Size_Range9:5-6 8.899e-151488
Genome_Size_Range9:6-8 1.091e-10238
Gram_Stain:Gram_Pos 0.000022458150
Habitat:Aquatic 0.00024896391
Habitat:Host-associated 0.0002688128206
Habitat:Multiple 3.867e-962178
Habitat:Specialized 0.00007784153
Habitat:Terrestrial 2.235e-6431
Motility:No 0.005172792151
Motility:Yes 6.380e-9107267
Optimal_temp.:30-37 0.0013408318
Oxygen_Req:Anaerobic 0.000353769102
Oxygen_Req:Facultative 4.412e-681201
Oxygen_Req:Microaerophilic 0.00109541618
Shape:Irregular_coccus 0.00001571717
Shape:Pleomorphic 0.005810388
Shape:Rod 2.797e-22127347
Shape:Sphere 0.00063271719
Shape:Spiral 5.179e-93334
Temp._range:Hyperthermophilic 0.00205091923
Temp._range:Mesophilic 3.701e-6229473
Temp._range:Thermophilic 0.00426682635



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ORGANISMS ENRICHED FOR GROUP:




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ORGANISMS DEPLETED FOR GROUP:




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PHYLOGENETIC PROFILE SIMILARITY WITH KNOWN PATHWAYS:

Pathways or complexes with absolute value of Pearson coefficient with respect to candidate larger than 0.4 are listed below
The candidate is assumed to exist in orgs listed in section List of organisms containing most genes from the group


Pathway or complex  # Orgs containing it  # of those orgs also containing candidate  Pearson Coeff  
GALACTITOLCAT-PWY (galactitol degradation)73610.6700
AST-PWY (arginine degradation II (AST pathway))120730.5959
LIPA-CORESYN-PWY (Lipid A-core biosynthesis)176890.5900
PWY0-1241 (ADP-L-glycero-β-D-manno-heptose biosynthesis)218950.5502
PWY0-981 (taurine degradation IV)106620.5235
PWY0-1182 (trehalose degradation II (trehalase))70480.5090
ECASYN-PWY (enterobacterial common antigen biosynthesis)191840.5059
GLUCARDEG-PWY (D-glucarate degradation I)152740.5050
GLUCONSUPER-PWY (D-gluconate degradation)229920.5010
PWY-5861 (superpathway of demethylmenaquinone-8 biosynthesis)50390.4985
GLYCOCAT-PWY (glycogen degradation I)246950.4966
PWY0-1315 (L-lactaldehyde degradation (anaerobic))45360.4861
PWY0-1329 (succinate to cytochrome bo oxidase electron transfer)96550.4795
COBALSYN-PWY (adenosylcobalamin salvage from cobinamide I)195820.4781
LPSSYN-PWY (superpathway of lipopolysaccharide biosynthesis)91530.4754
ENTNER-DOUDOROFF-PWY (Entner-Doudoroff pathway I)249930.4734
GLYCOLYSIS-E-D (superpathway of glycolysis and Entner-Doudoroff)249930.4734
PWY-5755 (4-hydroxybenzoate biosynthesis II (bacteria and fungi))81490.4680
PWY-46 (putrescine biosynthesis III)138660.4617
GLUTDEG-PWY (glutamate degradation II)194800.4614
PWY-6196 (serine racemization)102550.4565
4AMINOBUTMETAB-PWY (superpathway of 4-aminobutyrate degradation)212830.4519
IDNCAT-PWY (L-idonate degradation)246900.4519
HEXITOLDEGSUPER-PWY (superpathway of hexitol degradation)37300.4451
3-HYDROXYPHENYLACETATE-DEGRADATION-PWY (4-hydroxyphenylacetate degradation)149670.4416
PWY-5148 (acyl-CoA hydrolysis)227850.4413
PWY0-1335 (NADH to cytochrome bo oxidase electron transfer)112560.4330
SORBDEG-PWY (sorbitol degradation II)53360.4309
GLUTAMINDEG-PWY (glutamine degradation I)191750.4205
KDO-LIPASYN-PWY (KDO2-lipid A biosynthesis I)225820.4177
LACTOSEUTIL-PWY (lactose degradation II)53350.4152
GALACTCAT-PWY (D-galactonate degradation)104520.4140
GDPRHAMSYN-PWY (GDP-D-rhamnose biosynthesis)156650.4033
PWY0-1338 (biosynthesis of 4-amino-4-deoxy-L-arabinose-modified lipid A)21200.4029
PWY0-1355 (formate to trimethylamine N-oxide electron transfer)31250.4027
THREONINE-DEG2-PWY (threonine degradation II)214780.4019
PWY-5111 (CMP-KDO biosynthesis II (from D-arabinose 5-phosphate))300940.4012



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PAIRWISE GENOME CONTEXT SCORE MATRIX:

  EG12631   EG12630   EG12629   EG12548   EG12539   EG12152   
G78910.9987580.9998080.99940.9987220.9988070.999488
EG126310.999160.9995720.9998550.9998570.999488
EG126300.9994960.9988650.9989390.999375
EG126290.9994470.9994510.999908
EG125480.9999030.999442
EG125390.999447
EG12152



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PAIRWISE BLAST SCORES:

  G7891   EG12631   EG12630   EG12629   EG12548   EG12539   EG12152   
G78910.0f0-8.4e-70----
EG12631-0.0f0--1.5e-333.9e-40-
EG126303.6e-69-0.0f0----
EG12629---0.0f0--1.1e-33
EG12548-5.9e-30--0.0f03.8e-74-
EG12539-3.1e-47--1.6e-910.0f0-
EG12152---3.5e-39--0.0f0



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PATHWAYS OR PROTEIN COMPLEX MATCHES IN TARGET ORG:

For each case, all genes involved in the pathway or complex are listed. For each gene we list: a tag indicating whether the gene is part of the candidate list or not, the average and the minimum scores of the gene to the candidate list, the gene name, and its product names.

- GLUCONSUPER-PWY (D-gluconate degradation) (degree of match pw to cand: 1.000, degree of match cand to pw: 0.286, average score: 1.000)
  Genes in pathway or complex:
   *in cand* 0.9996 0.9994 EG12152 (idnK) GLUCONOKINI-MONOMER (D-gluconate kinase, thermosensitive)
   *in cand* 0.9996 0.9994 EG12629 (gntK) GLUCONOKINII-MONOMER (GntK)
  Genes in candidate but not in this pathway or complex:
   *in cand* 0.9995 0.9988 EG12539 (idnT) YJGT-MONOMER (L-idonate / 5-ketogluconate / gluconate transporter)
   *in cand* 0.9995 0.9987 EG12548 (yjhF) YJHF-MONOMER (YjhF Gnt tranporter)
   *in cand* 0.9994 0.9989 EG12630 (gntR) PD03585 (GntR transcriptional repressor)
   *in cand* 0.9995 0.9988 EG12631 (gntU) GNTU-MONOMER (GntU gluconate Gnt transporter)
   *in cand* 0.9993 0.9987 G7891 (idnR) G7891-MONOMER (IdnR transcriptional regulator)



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GENOME CONTEXT INFORMATION:

Each row corresponds to a replicon in an organism, each column to a gene in the candidate. The second column indicates whether the organims was included in the list used to compute the genome context scores or not. Some organisms are not included because they are phylogenetically too similar to others already in the list.
The number in the matrix indicate the position of the homolog of the gene in the replicon. All numbers are relative to the smaller one, which is assigned a position of zero. Two columns with the same number indicate that the two genes matched the same gene in that organism.

Genome browser links for gene clusters

The links below opens a genome browser BioCyc page for each cluster of genes in the target genome. These pages shows the central gene of the cluster in the target genome and its best homolog in the reference genomes, for the genomes that contain homologs for at least 75% of the genes in the group. Only one genome per phylogenetic cluster of organisms is shown, to keep the list smaller.

EG12629 EG12630 EG12631 (centered at EG12629)
EG12539 G7891 (centered at EG12539)
EG12152 (centered at EG12152)
EG12548 (centered at EG12548)


ORG:REPLICON:CIRC?\GENE  IN REF LIST  G7891   EG12631   EG12630   EG12629   EG12548   EG12539   EG12152   
215/623199/623197/623186/623203/623199/623186/623
AAUR290340:2:Tyes-3457-0213521350
AAVE397945:0:Tyes1-8100--0
ABAC204669:0:Tyes---0--0
ABAU360910:0:Tyes0-0----
ACAU438753:0:Tyes0-0----
ACRY349163:8:Tyes1172-11720--0
AHYD196024:0:Tyes4041001
AMAR329726:9:Tyes---0--0
AMET293826:0:Tyes0-0----
AORE350688:0:Tyes-860-8686-
APLE416269:0:Tyes2021001
APLE434271:0:Tno2021001
ASAL382245:5:Tyes0403443
ASP1667:3:Tyes-0344423232853285232
ASP232721:2:Tyes1-10--0
ASP62977:0:Tyes-0-1001
AVAR240292:3:Tyes0--2694--2694
BAMB339670:3:Tno80205761001
BAMB398577:3:Tno80605421001
BAMY326423:0:Tyes40040-00-
BANT260799:0:Tno50204440-00-
BANT261594:2:Tno46704388-00-
BANT568206:2:Tyes362904633-00-
BANT592021:2:Tno49604618-00-
BBRO257310:0:Tyes0-0----
BCEN331271:0:Tno0-0----
BCEN331271:2:Tno-0-1001
BCEN331272:1:Tyes0-0----
BCEN331272:3:Tyes-0-1001
BCER226900:1:Tyes015403933-15401540-
BCER288681:0:Tno4580458-00-
BCER315749:1:Tyes010640-10641064-
BCER405917:1:Tyes014870-14871487-
BCER572264:1:Tno4280428-00-
BCLA66692:0:Tyes168502399-00-
BFRA272559:1:Tyes0------
BFRA295405:0:Tno0------
BHAL272558:0:Tyes247301073-00-
BJAP224911:0:Fyes0-02870--2870
BLIC279010:0:Tyes-1060-106106-
BLON206672:0:Tyes---0--0
BMAL243160:1:Tno56915690110
BMAL320388:1:Tno83718370110
BMAL320389:1:Tyes0208402083208420842083
BPAR257311:0:Tno0-0----
BPET94624:0:Tyes0-0----
BPSE272560:1:Tyes0163501634163516351634
BPSE320372:1:Tno0196401963196419641963
BPSE320373:1:Tno0191601915191619161915
BPUM315750:0:Tyes-40--00-
BSP36773:0:Tyes0------
BSP36773:2:Tyes-06091001
BSP376:0:Tyes0-02577--2577
BSUB:0:Tyes-0--00-
BTHA271848:1:Tno1575015751001
BTHU281309:1:Tno4080408-00-
BTHU412694:1:Tno4490449-00-
BVIE269482:5:Tyes0-0----
BVIE269482:7:Tyes-0-1001
BWEI315730:4:Tyes015010-15011501-
BXEN266265:1:Tyes09390-939939-
CACE272562:1:Tyes05740-574574-
CBEI290402:0:Tyes0-678----
CBOT36826:1:Tno020700-20702070-
CBOT441770:0:Tyes019640-19641964-
CBOT441771:0:Tno0-0----
CBOT441772:1:Tno020450-20452045-
CBOT498213:1:Tno020890-20892089-
CBOT508765:1:Tyes011580-11581158-
CBOT515621:2:Tyes022240-22242224-
CBOT536232:0:Tno021800-21802180-
CDIF272563:1:Tyes025610-25612561-
CDIP257309:0:Tyes-0-1001
CEFF196164:0:Fyes-0-1810001810
CGLU196627:0:Tyes-430-04304300
CHUT269798:0:Tyes-0-1001
CJAP155077:0:Tyes485048548400484
CJEI306537:0:Tyes---0--0
CKLU431943:1:Tyes0-0----
CMIC31964:2:Tyes-546-05465460
CMIC443906:2:Tyes-650-06506500
CNOV386415:0:Tyes909-00-
CPER195102:1:Tyes0-0----
CPER195103:0:Tno0-0----
CPER289380:3:Tyes0-0----
CPHY357809:0:Tyes-0--00-
CPSY167879:0:Tyes---0--0
CSAL290398:0:Tyes2021001
CSP501479:5:Fyes0-0----
CSP78:2:Tyes0-01657--1657
CTET212717:0:Tyes0-0----
CVIO243365:0:Tyes0-01--1
DGEO319795:0:Tyes157-0----
DRAD243230:3:Tyes---0--0
DSHI398580:0:Tyes--0----
DSHI398580:5:Tyes0------
ECAR218491:0:Tyes0201221
ECOL199310:0:Tno1125031112611261129
ECOL316407:0:Tno413201442414417
ECOL331111:6:Tno252325240024
ECOL362663:0:Tno9660219679671
ECOL364106:1:Tno918021919919922
ECOL405955:2:Tyes922021923923926
ECOL409438:6:Tyes242224230023
ECOL413997:0:Tno862021863863866
ECOL439855:4:Tno985021986986989
ECOL469008:0:Tno34542012234533450
ECOL481805:0:Tno020123231
ECOL585034:0:Tno242224230023
ECOL585035:0:Tno292729281043028
ECOL585055:0:Tno943021944944947
ECOL585056:2:Tno882021970883886
ECOL585057:0:Tno812021813813816
ECOL585397:0:Tno1005333534001008
ECOL83334:0:Tno302830290029
ECOLI:0:Tno845021876846849
ECOO157:0:Tno312931300030
EFAE226185:3:Tyes0------
EFER585054:1:Tyes302830290029
ESP42895:1:Tyes181618170017
FJOH376686:0:Tyes-0--00-
FNOD381764:0:Tyes----00-
FNUC190304:0:Tyes-0--00-
GBET391165:0:Tyes---0--0
GKAU235909:1:Tyes0-0----
GOXY290633:5:Tyes-479-04794790
GTHE420246:1:Tyes86501325-00-
GVIO251221:0:Tyes---0--0
HAUR316274:2:Tyes---0--0
HCHE349521:0:Tyes1-10--0
HINF281310:0:Tyes0------
HINF374930:0:Tyes0------
HINF71421:0:Tno0504--504504-
HMOD498761:0:Tyes-0--00-
HSOM205914:1:Tyes0820831416141683
HSOM228400:0:Tno05390542539539542
JSP290400:1:Tyes0-0----
KPNE272620:2:Tyes1152171918001150
KRAD266940:2:Fyes-1231-0123112310
LBRE387344:2:Tyes-0--99-
LCAS321967:1:Tyes-0--00-
LCHO395495:0:Tyes1-10--0
LGAS324831:0:Tyes0------
LLAC272622:5:Tyes0------
LLAC272623:0:Tyes0------
LMES203120:1:Tyes-0--00-
LMON265669:0:Tyes--0----
LPLA220668:0:Tyes-0--00-
LREU557436:0:Tyes----00-
LSAK314315:0:Tyes-01555-00-
LSPH444177:1:Tyes-5410-541541-
MABS561007:1:Tyes-0-1001
MAVI243243:0:Tyes---0--0
MEXT419610:0:Tyes---0--0
MFLA265072:0:Tyes0-0----
MGIL350054:3:Tyes-1-0110
MLOT266835:2:Tyes5-50--0
MMAR394221:0:Tyes-0-3003
MPET420662:1:Tyes0-0----
MSME246196:0:Tyes-3313-0331333130
MSP164756:1:Tno-1-01-0
MSP164757:0:Tno-1-01-0
MSP189918:2:Tyes-1-01-0
MSP266779:3:Tyes---0--0
MSP400668:0:Tyes01887011887-1
MSP409:2:Tyes0-0----
MSUC221988:0:Tyes571133057128301330283
MTHE264732:0:Tyes5300--00-
MVAN350058:0:Tyes-1-0110
MXAN246197:0:Tyes---0--0
NFAR247156:2:Tyes---0--0
NGON242231:0:Tyes-1-0110
NHAM323097:2:Tyes---0--0
NMEN122586:0:Tno-0-1001
NMEN122587:0:Tyes-1-0110
NMEN272831:0:Tno-0-1001
NMEN374833:0:Tno-1-0110
NSP103690:6:Tyes---0--0
NSP35761:1:Tyes---0--0
NWIN323098:0:Tyes---0--0
OANT439375:4:Tyes-510-05105100
OCAR504832:0:Tyes---0--0
OIHE221109:0:Tyes-010-976976-
PACN267747:0:Tyes-0-1001
PAER208963:0:Tyes2021001
PAER208964:0:Tno0201221
PATL342610:0:Tyes-010281399001399
PDIS435591:0:Tyes-0--00-
PENT384676:0:Tyes2021001
PFLU205922:0:Tyes2021001
PFLU216595:1:Tyes2021001
PFLU220664:0:Tyes2021001
PHAL326442:0:Tyes0102112
PING357804:0:Tyes0-03--3
PINT246198:1:Tyes0------
PLUM243265:0:Fyes0201151921
PMEN399739:0:Tyes0-03--3
PMOB403833:0:Tyes2990--00-
PMUL272843:1:Tyes0201221
PNAP365044:8:Tyes1-10--0
PPEN278197:0:Tyes-0--00-
PPRO298386:2:Tyes0-0----
PPUT160488:0:Tno0201221
PPUT351746:0:Tyes2021001
PPUT76869:0:Tno2021001
PSP117:0:Tyes-----0-
PSP296591:2:Tyes0-0106--106
PSP56811:2:Tyes----0--
PSTU379731:0:Tyes0-03--3
PSYR205918:0:Tyes0201221
PSYR223283:2:Tyes0201221
RDEN375451:4:Tyes3269-0----
RETL347834:2:Tyes---0---
RETL347834:5:Tyes1038-1038---0
REUT264198:1:Tyes--0----
REUT264198:2:Tyes6180--00-
REUT264198:3:Tyes---0--0
REUT381666:1:Tyes3870387-00-
REUT381666:2:Tyes---0--0
RFER338969:1:Tyes1-10--0
RLEG216596:3:Tyes---0---
RLEG216596:6:Tyes1216-1216---0
RMET266264:1:Tyes65065-00-
RMET266264:2:Tyes---0--0
RPAL258594:0:Tyes---0--0
RPAL316055:0:Tyes---0--0
RPAL316056:0:Tyes---0--0
RPAL316057:0:Tyes---0--0
RPAL316058:0:Tyes---0--0
RPOM246200:0:Tyes0-0----
RRUB269796:1:Tyes-0--00-
RSAL288705:0:Tyes-162-1001
RSOL267608:0:Tyes4250--00-
RSOL267608:1:Tyes--13850--0
RSP101510:3:Fyes-102-93500935
RSPH272943:4:Tyes0-0----
RSPH349101:2:Tno0-0----
RSPH349102:5:Tyes0-0----
SAUR158878:1:Tno-0--00-
SAUR158879:1:Tno-0--00-
SAUR196620:0:Tno0797--797797-
SAUR273036:0:Tno0805--805805-
SAUR282458:0:Tno0789--789789-
SAUR282459:0:Tno0777--777777-
SAUR359786:1:Tno0777--777777-
SAUR359787:1:Tno0733--733733-
SAUR367830:3:Tno0701--701701-
SAUR418127:0:Tyes-0--00-
SAUR426430:0:Tno0822--822822-
SAUR93061:0:Fno0957--957957-
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