CANDIDATE ID: 267

CANDIDATE ID: 267

NUMBER OF GENES: 7
AVERAGE SCORE:    9.9919914e-1 (range=[0.0,1.0])
AVERAGE MINIMUM BLAST P-VAL:    1.0000000e+0

Gene List
List of organisms containing most genes from the group
    Phylogenetic tree highlighting these organisms (opens new page)
List of organisms containing very few or no genes from the group
List of organisms enriched for group
List of organisms depleted for group
Phylogenetic profile similarity with known pathways
Pairwise genome context scores
Pairwise Blast scores
Pathway or protein complex matches in target organism
Genome context matrix
    Genes and their orthologs in genome browser BioCyc pages



GENE LIST:

- G7531 (yggW) (b2955)
   Products of gene:
     - G7531-MONOMER (predicted oxidoreductase)

- G7530 (rdgB) (b2954)
   Products of gene:
     - G7530-MONOMER (RdgB)
     - CPLX0-7826 (dITP/XTP pyrophosphatase)
       Reactions:
        ITP + H2O  ->  inosine-5'-phosphate + diphosphate + H+
        dITP + H2O  ->  dIMP + diphosphate + H+
        XTP + H2O  ->  xanthosine-5-phosphate + diphosphate + H+

- G7529 (yggU) (b2953)
   Products of gene:
     - G7529-MONOMER (conserved protein)

- G7528 (yggT) (b2952)
   Products of gene:
     - G7528-MONOMER (predicted inner membrane protein)

- G7527 (yggS) (b2951)
   Products of gene:
     - G7527-MONOMER (predicted enzyme)

- G7526 (yggR) (b2950)
   Products of gene:
     - G7526-MONOMER (predicted transporter)

- EG11779 (trmI) (b2960)
   Products of gene:
     - EG11779-MONOMER (tRNA (m7G46) methyltransferase)
       Reactions:
        all-tRNAs + S-adenosyl-L-methionine  =  a tRNA containing N7-methylguanine + S-adenosyl-L-homocysteine



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ORGANISMS CONTAINING AT LEAST 6 GENES FROM THE GROUP:

Total number of orgs: 154
Effective number of orgs (counting one per cluster within 468 clusters): 111

Organism list
Homologs in each organism in the list
Features enriched in organism list


Follow (ncbi) link, when present, to find the set of organism features for each organism
Org ID  Org Name  # genes in group found in org  
YPSE349747 ncbi Yersinia pseudotuberculosis IP 317587
YPSE273123 ncbi Yersinia pseudotuberculosis IP 329537
YPES386656 ncbi Yersinia pestis Pestoides F7
YPES377628 ncbi Yersinia pestis Nepal5167
YPES360102 ncbi Yersinia pestis Antiqua7
YPES349746 ncbi Yersinia pestis Angola7
YPES214092 ncbi Yersinia pestis CO927
YPES187410 ncbi Yersinia pestis KIM 107
YENT393305 ncbi Yersinia enterocolitica enterocolitica 80817
VVUL216895 ncbi Vibrio vulnificus CMCP67
VVUL196600 ncbi Vibrio vulnificus YJ0167
VPAR223926 ncbi Vibrio parahaemolyticus RIMD 22106337
VFIS312309 ncbi Vibrio fischeri ES1146
VEIS391735 ncbi Verminephrobacter eiseniae EF01-26
VCHO345073 ncbi Vibrio cholerae O3957
VCHO ncbi Vibrio cholerae O1 biovar El Tor str. N169617
TTUR377629 ncbi Teredinibacter turnerae T79017
TERY203124 ncbi Trichodesmium erythraeum IMS1016
TELO197221 ncbi Thermosynechococcus elongatus BP-17
TDEN292415 ncbi Thiobacillus denitrificans ATCC 252597
TCRU317025 ncbi Thiomicrospira crunogena XCL-26
SWOL335541 ncbi Syntrophomonas wolfei wolfei Goettingen6
STYP99287 ncbi Salmonella enterica enterica serovar Typhimurium str. LT27
SSP94122 ncbi Shewanella sp. ANA-37
SSP321332 ncbi Synechococcus sp. JA-2-3Ba(2-13)6
SSP321327 ncbi Synechococcus sp. JA-3-3Ab6
SSON300269 ncbi Shigella sonnei Ss0467
SSED425104 ncbi Shewanella sediminis HAW-EB37
SPRO399741 ncbi Serratia proteamaculans 5687
SPEA398579 ncbi Shewanella pealeana ATCC 7003457
SONE211586 ncbi Shewanella oneidensis MR-17
SLOI323850 ncbi Shewanella loihica PV-47
SHIGELLA ncbi Shigella flexneri 2a str. 2457T7
SHAL458817 ncbi Shewanella halifaxensis HAW-EB47
SGLO343509 ncbi Sodalis glossinidius morsitans6
SFLE373384 ncbi Shigella flexneri 5 str. 84017
SFLE198214 ncbi Shigella flexneri 2a str. 3017
SENT454169 ncbi Salmonella enterica enterica serovar Heidelberg str. SL4767
SENT321314 ncbi Salmonella enterica enterica serovar Choleraesuis str. SC-B677
SENT295319 ncbi Salmonella enterica enterica serovar Paratyphi A str. ATCC 91507
SENT220341 ncbi Salmonella enterica enterica serovar Typhi str. CT187
SENT209261 ncbi Salmonella enterica enterica serovar Typhi str. Ty27
SDYS300267 ncbi Shigella dysenteriae Sd1977
SDEN318161 ncbi Shewanella denitrificans OS2176
SDEG203122 ncbi Saccharophagus degradans 2-406
SBOY300268 ncbi Shigella boydii Sb2277
SBAL402882 ncbi Shewanella baltica OS1857
SBAL399599 ncbi Shewanella baltica OS1957
RSOL267608 ncbi Ralstonia solanacearum GMI10006
RRUB269796 ncbi Rhodospirillum rubrum ATCC 111706
RMET266264 ncbi Ralstonia metallidurans CH346
RFER338969 ncbi Rhodoferax ferrireducens T1187
REUT381666 ncbi Ralstonia eutropha H166
REUT264198 ncbi Ralstonia eutropha JMP1346
PTHE370438 ncbi Pelotomaculum thermopropionicum SI6
PSYR223283 ncbi Pseudomonas syringae pv. tomato str. DC30006
PSYR205918 ncbi Pseudomonas syringae pv. syringae B728a6
PSTU379731 ncbi Pseudomonas stutzeri A15016
PSP56811 Psychrobacter sp.6
PSP296591 ncbi Polaromonas sp. JS6667
PPUT76869 ncbi Pseudomonas putida GB-16
PPUT351746 ncbi Pseudomonas putida F16
PPUT160488 ncbi Pseudomonas putida KT24406
PPRO298386 ncbi Photobacterium profundum SS97
PNAP365044 ncbi Polaromonas naphthalenivorans CJ27
PMUL272843 ncbi Pasteurella multocida multocida Pm706
PMEN399739 ncbi Pseudomonas mendocina ymp7
PLUM243265 ncbi Photorhabdus luminescens laumondii TTO16
PING357804 ncbi Psychromonas ingrahamii 377
PHAL326442 ncbi Pseudoalteromonas haloplanktis TAC1256
PFLU220664 ncbi Pseudomonas fluorescens Pf-57
PFLU216595 ncbi Pseudomonas fluorescens SBW256
PFLU205922 ncbi Pseudomonas fluorescens Pf0-17
PENT384676 ncbi Pseudomonas entomophila L486
PCRY335284 ncbi Psychrobacter cryohalolentis K56
PCAR338963 ncbi Pelobacter carbinolicus DSM 23807
PATL342610 ncbi Pseudoalteromonas atlantica T6c7
PARC259536 ncbi Psychrobacter arcticus 273-46
PAER208964 ncbi Pseudomonas aeruginosa PAO16
PAER208963 ncbi Pseudomonas aeruginosa UCBPP-PA147
NSP103690 ncbi Nostoc sp. PCC 71207
NOCE323261 ncbi Nitrosococcus oceani ATCC 197077
NMUL323848 ncbi Nitrosospira multiformis ATCC 251966
NEUT335283 ncbi Nitrosomonas eutropha C917
NEUR228410 ncbi Nitrosomonas europaea ATCC 197187
MSUC221988 ncbi Mannheimia succiniciproducens MBEL55E6
MFLA265072 ncbi Methylobacillus flagellatus KT6
MCAP243233 ncbi Methylococcus capsulatus Bath6
MAQU351348 ncbi Marinobacter aquaeolei VT86
LPNE400673 ncbi Legionella pneumophila Corby6
LPNE297246 ncbi Legionella pneumophila Paris7
LPNE297245 ncbi Legionella pneumophila Lens7
LPNE272624 ncbi Legionella pneumophila pneumophila Philadelphia 17
LCHO395495 ncbi Leptothrix cholodnii SP-66
KPNE272620 ncbi Klebsiella pneumoniae pneumoniae MGH 785787
JSP375286 ncbi Janthinobacterium sp. Marseille6
ILOI283942 ncbi Idiomarina loihiensis L2TR6
HSOM228400 ncbi Haemophilus somnus 23366
HSOM205914 ncbi Haemophilus somnus 129PT6
HHAL349124 ncbi Halorhodospira halophila SL17
HDUC233412 ncbi Haemophilus ducreyi 35000HP6
HCHE349521 ncbi Hahella chejuensis KCTC 23967
HARS204773 ncbi Herminiimonas arsenicoxydans6
GURA351605 ncbi Geobacter uraniireducens Rf47
GTHE420246 ncbi Geobacillus thermodenitrificans NG80-26
GSUL243231 ncbi Geobacter sulfurreducens PCA7
GMET269799 ncbi Geobacter metallireducens GS-157
GKAU235909 ncbi Geobacillus kaustophilus HTA4266
ESP42895 Enterobacter sp.7
EFER585054 ncbi Escherichia fergusonii ATCC 354697
ECOO157 ncbi Escherichia coli O157:H7 EDL9337
ECOL83334 Escherichia coli O157:H77
ECOL585397 ncbi Escherichia coli ED1a7
ECOL585057 ncbi Escherichia coli IAI397
ECOL585056 ncbi Escherichia coli UMN0267
ECOL585055 ncbi Escherichia coli 559897
ECOL585035 ncbi Escherichia coli S887
ECOL585034 ncbi Escherichia coli IAI17
ECOL481805 ncbi Escherichia coli ATCC 87397
ECOL469008 ncbi Escherichia coli BL21(DE3)7
ECOL439855 ncbi Escherichia coli SMS-3-57
ECOL413997 ncbi Escherichia coli B str. REL6067
ECOL409438 ncbi Escherichia coli SE117
ECOL405955 ncbi Escherichia coli APEC O17
ECOL364106 ncbi Escherichia coli UTI897
ECOL362663 ncbi Escherichia coli 5367
ECOL331111 ncbi Escherichia coli E24377A7
ECOL316407 ncbi Escherichia coli K-12 substr. W31107
ECOL199310 ncbi Escherichia coli CFT0737
ECAR218491 ncbi Pectobacterium atrosepticum SCRI10437
DRED349161 ncbi Desulfotomaculum reducens MI-16
DPSY177439 ncbi Desulfotalea psychrophila LSv546
DOLE96561 ncbi Desulfococcus oleovorans Hxd36
DARO159087 ncbi Dechloromonas aromatica RCB7
CVIO243365 ncbi Chromobacterium violaceum ATCC 124726
CSAL290398 ncbi Chromohalobacter salexigens DSM 30436
CPSY167879 ncbi Colwellia psychrerythraea 34H6
CJAP155077 Cellvibrio japonicus7
BBRO257310 ncbi Bordetella bronchiseptica RB506
AVAR240292 ncbi Anabaena variabilis ATCC 294137
ASP76114 ncbi Aromatoleum aromaticum EbN17
ASP62977 ncbi Acinetobacter sp. ADP16
ASP62928 ncbi Azoarcus sp. BH727
ASP232721 ncbi Acidovorax sp. JS426
ASAL382245 ncbi Aeromonas salmonicida salmonicida A4497
APLE434271 ncbi Actinobacillus pleuropneumoniae serovar 3 str. JL036
APLE416269 ncbi Actinobacillus pleuropneumoniae L206
AMAR329726 ncbi Acaryochloris marina MBIC110176
AHYD196024 Aeromonas hydrophila dhakensis7
AFER243159 ncbi Acidithiobacillus ferrooxidans ATCC 232707
AEHR187272 ncbi Alkalilimnicola ehrlichii MLHE-16
ADEH290397 ncbi Anaeromyxobacter dehalogenans 2CP-C6
ABOR393595 ncbi Alcanivorax borkumensis SK26
AAVE397945 ncbi Acidovorax citrulli AAC00-16


Names of the homologs of the genes in the group in each of these orgs
  G7531   G7530   G7529   G7528   G7527   G7526   EG11779   
YPSE349747 YPSIP31758_0825YPSIP31758_0826YPSIP31758_0827YPSIP31758_0828YPSIP31758_0830YPSIP31758_0831YPSIP31758_0820
YPSE273123 YPTB3218YPTB3217YPTB3216YPTB3215YPTB3213YPTB3212YPTB3223
YPES386656 YPDSF_0569YPDSF_0570YPDSF_0571YPDSF_0572YPDSF_0574YPDSF_0575YPDSF_0563
YPES377628 YPN_3143YPN_3142YPN_3141YPN_3140YPN_3138YPN_3137YPN_3149
YPES360102 YPA_0319YPA_0320YPA_0321YPA_0322YPA_0324YPA_0325YPA_0313
YPES349746 YPANGOLA_A0143YPANGOLA_A0142YPANGOLA_A0141YPANGOLA_A0140YPANGOLA_A0138YPANGOLA_A3337YPANGOLA_A0149
YPES214092 YPO0946YPO0945YPO0944YPO0943YPO0941YPO0940YPO0951
YPES187410 Y3332Y3331Y3330Y3329Y3327Y3326Y3338
YENT393305 YE3438YE3437YE3436YE3435YE3433YE3432YE3442
VVUL216895 VV1_1519VV1_1520VV1_1522VV1_1523VV1_1525VV1_1526VV1_1516
VVUL196600 VV2880VV2879VV2877VV2876VV2873VV2874VV2883
VPAR223926 VP2622VP2621VP2619VP2618VP2616VP2615VP2625
VFIS312309 VF0424VF0425VF0427VF0428VF0430VF0431
VEIS391735 VEIS_4155VEIS_4156VEIS_4865VEIS_1687VEIS_1688VEIS_1672
VCHO345073 VC0395_A0007VC0395_A0008VC0395_A0010VC0395_A0011VC0395_A0013VC0395_A0014VC0395_A0005
VCHO VC0455VC0456VC0458VC0459VC0461VC0462VC0453
TTUR377629 TERTU_0214TERTU_0216TERTU_0220TERTU_0221TERTU_0223TERTU_0225TERTU_0253
TERY203124 TERY_1194TERY_1005TERY_2189TERY_4903TERY_1747TERY_0871
TELO197221 TLL1192TLL1797TSR1994TSR0534TLL1037TLL0121TLL1983
TDEN292415 TBD_0479TBD_0478TBD_2620TBD_2416TBD_0668TBD_2419TBD_2125
TCRU317025 TCR_0117TCR_2054TCR_1838TCR_1834TCR_1750TCR_0119
SWOL335541 SWOL_1582SWOL_0454SWOL_0959SWOL_0956SWOL_0953SWOL_0532
STYP99287 STM3104STM3103STM3102STM3101STM3100STM3099STM3109
SSP94122 SHEWANA3_1188SHEWANA3_1189SHEWANA3_1191SHEWANA3_1192SHEWANA3_1194SHEWANA3_1195SHEWANA3_1182
SSP321332 CYB_0890CYB_0830CYB_1940CYB_1746CYB_2142CYB_2166
SSP321327 CYA_0785CYA_2828CYA_2736CYA_0860CYA_1966CYA_2671
SSON300269 SSO_3109SSO_3108SSO_3107SSO_3106SSO_3104SSO_3105SSO_3236
SSED425104 SSED_1226SSED_1227SSED_1229SSED_1230SSED_1232SSED_1233SSED_1220
SPRO399741 SPRO_4035SPRO_4034SPRO_4033SPRO_4032SPRO_4030SPRO_4029SPRO_4042
SPEA398579 SPEA_1121SPEA_1122SPEA_1124SPEA_1125SPEA_1127SPEA_1128SPEA_1109
SONE211586 SO_3359SO_3358SO_3356SO_3355SO_3352SO_3351SO_3367
SLOI323850 SHEW_1131SHEW_1132SHEW_1134SHEW_1135SHEW_1137SHEW_1138SHEW_1124
SHIGELLA YGGWYGGVYGGUYGGTYGGSYGGRYGGH
SHAL458817 SHAL_1166SHAL_1167SHAL_1169SHAL_1170SHAL_1172SHAL_1173SHAL_1155
SGLO343509 SG2032SG2031SG2030SG2029SG2027SG2034
SFLE373384 SFV_3009SFV_3008SFV_3007SFV_3006SFV_3005SFV_3004SFV_3018
SFLE198214 AAN44427.1AAN44426.1AAN44425.1AAN44424.1AAN44423.1AAN44422.1AAN44438.1
SENT454169 SEHA_C3343SEHA_C3342SEHA_C3341SEHA_C3340SEHA_C3339SEHA_C3338SEHA_C3349
SENT321314 SCH_3044SCH_3043SCH_3042SCH_3041SCH_3040SCH_3039SCH_3050
SENT295319 SPA2967SPA2966SPA2965SPA2964SPA2963SPA2962SPA2972
SENT220341 STY3257STY3256STY3255STY3254STY3253STY3252STY3264
SENT209261 T3016T3015T3014T3013T3012T3011T3022
SDYS300267 SDY_3117SDY_3118SDY_3119SDY_3120SDY_3122SDY_3121SDY_3112
SDEN318161 SDEN_2687SDEN_2686SDEN_2684SDEN_2682SDEN_2681SDEN_2697
SDEG203122 SDE_3651SDE_3647SDE_3643SDE_3641SDE_3640SDE_3592
SBOY300268 SBO_3035SBO_3036SBO_3037SBO_3038SBO_3040SBO_3039SBO_3030
SBAL402882 SHEW185_3046SHEW185_3045SHEW185_3043SHEW185_3042SHEW185_3040SHEW185_3039SHEW185_3052
SBAL399599 SBAL195_3189SBAL195_3188SBAL195_3186SBAL195_3185SBAL195_3183SBAL195_3182SBAL195_3195
RSOL267608 RSC2161RSC2160RSP1385RSC2683RSC2682RSC0703
RRUB269796 RRU_A3639RRU_A3640RRU_A3526RRU_A1141RRU_A0118RRU_A3777
RMET266264 RMET_0850RMET_0851RMET_3642RMET_2937RMET_2936RMET_2704
RFER338969 RFER_1631RFER_1630RFER_0749RFER_1785RFER_3879RFER_3878RFER_1896
REUT381666 H16_A0947H16_A0948H16_B0171H16_A3105H16_A3104H16_A2870
REUT264198 REUT_A2479REUT_A2478REUT_B5573REUT_A2801REUT_A2800REUT_A0758
PTHE370438 PTH_0874PTH_0792PTH_1821PTH_1825PTH_1828PTH_1146
PSYR223283 PSPTO_5052PSPTO_5051PSPTO_5048PSPTO_5046PSPTO_5045PSPTO_0435
PSYR205918 PSYR_0471PSYR_0472PSYR_0475PSYR_0477PSYR_0478PSYR_4739
PSTU379731 PST_3974PST_3973PST_3968PST_3966PST_3965PST_3982
PSP56811 PSYCPRWF_1655PSYCPRWF_0308PSYCPRWF_0338PSYCPRWF_1883PSYCPRWF_1884PSYCPRWF_1763
PSP296591 BPRO_1341BPRO_1340BPRO_2664BPRO_2699BPRO_0397BPRO_0396BPRO_2905
PPUT76869 PPUTGB1_5151PPUTGB1_5150PPUTGB1_5146PPUTGB1_5144PPUTGB1_5143PPUTGB1_5153
PPUT351746 PPUT_4974PPUT_4973PPUT_4969PPUT_4967PPUT_4966PPUT_4976
PPUT160488 PP_5101PP_5100PP_5096PP_5094PP_5093PP_5103
PPRO298386 PBPRA3149PBPRA3148PBPRA3146PBPRA3145PBPRA3143PBPRA3142PBPRA3152
PNAP365044 PNAP_0816PNAP_0815PNAP_0379PNAP_2437PNAP_0280PNAP_0278PNAP_2936
PMUL272843 PM1669PM1666PM1313PM1314PM0112PM1317
PMEN399739 PMEN_4159PMEN_4158PMEN_4153PMEN_4152PMEN_4150PMEN_4149PMEN_4166
PLUM243265 PLU1176PLU1177PLU1178PLU1180PLU1181PLU1170
PING357804 PING_3046PING_3045PING_3043PING_3042PING_3040PING_3039PING_0377
PHAL326442 PSHAA2609PSHAA2608PSHAA2606PSHAA2604PSHAA2603PSHAA0553
PFLU220664 PFL_5846PFL_5845PFL_5841PFL_5840PFL_5838PFL_5837PFL_5849
PFLU216595 PFLU5770PFLU5769PFLU5765PFLU5763PFLU5762PFLU5772
PFLU205922 PFL_5327PFL_5326PFL_5322PFL_5321PFL_5319PFL_5318PFL_5329
PENT384676 PSEEN0311PSEEN0312PSEEN0316PSEEN0318PSEEN0319PSEEN0308
PCRY335284 PCRYO_1168PCRYO_2232PCRYO_0178PCRYO_0294PCRYO_0293PCRYO_2013
PCAR338963 PCAR_0110PCAR_2029PCAR_0617PCAR_0615PCAR_0403PCAR_0871PCAR_0761
PATL342610 PATL_3288PATL_3287PATL_0407PATL_3720PATL_3718PATL_3717PATL_0078
PARC259536 PSYC_1224PSYC_1939PSYC_0166PSYC_0268PSYC_0267PSYC_1731
PAER208964 PA0386PA0387PA0392PA0394PA0395PA0382
PAER208963 PA14_05040PA14_05050PA14_05120PA14_05130PA14_05160PA14_05180PA14_05000
NSP103690 ALL4956ALL5088ASL3196ASL2061ALR0486ALL2443ALR1845
NOCE323261 NOC_2444NOC_2443NOC_3000NOC_3001NOC_3003NOC_3004NOC_1026
NMUL323848 NMUL_A0068NMUL_A0067NMUL_A0579NMUL_A0580NMUL_A2732NMUL_A0069
NEUT335283 NEUT_0310NEUT_0309NEUT_2146NEUT_2147NEUT_2339NEUT_2338NEUT_0322
NEUR228410 NE0278NE0277NE0395NE0394NE0966NE0965NE0283
MSUC221988 MS1746MS1747MS0322MS0321MS1705MS0318
MFLA265072 MFLA_0040MFLA_0042MFLA_2110MFLA_2108MFLA_2107MFLA_0231
MCAP243233 MCA_3079MCA_3023MCA_1534MCA_1536MCA_1537MCA_1532
MAQU351348 MAQU_0528MAQU_0529MAQU_0534MAQU_0536MAQU_0537MAQU_0526
LPNE400673 LPC_1823LPC_1994LPC_1500LPC_1498LPC_1497LPC_2863
LPNE297246 LPP2303LPP2548PLPP0102LPP1998LPP1996LPP1995LPP0545
LPNE297245 LPL2276LPL2404LPL2644LPL1993LPL1991LPL1990LPL0521
LPNE272624 LPG2354LPG2484LPG2716LPG2016LPG2014LPG2013LPG0481
LCHO395495 LCHO_0703LCHO_0704LCHO_0384LCHO_1630LCHO_1631LCHO_1911
KPNE272620 GKPORF_B2734GKPORF_B2733GKPORF_B2732GKPORF_B2731GKPORF_B2730GKPORF_B2729GKPORF_B2737
JSP375286 MMA_1334MMA_1333MMA_2976MMA_0341MMA_0340MMA_2928
ILOI283942 IL1980IL1979IL1976IL1974IL1973IL1981
HSOM228400 HSM_2009HSM_2010HSM_1819HSM_1820HSM_0348HSM_1828
HSOM205914 HS_0124HS_0125HS_1657HS_1658HS_1215HS_1666
HHAL349124 HHAL_0971HHAL_0972HHAL_0948HHAL_0947HHAL_0945HHAL_0316HHAL_2398
HDUC233412 HD_1668HD_1348HD_0778HD_0777HD_0298HD_0775
HCHE349521 HCH_06363HCH_06362HCH_06357HCH_06356HCH_06353HCH_06352HCH_06365
HARS204773 HEAR2124HEAR2125HEAR2767HEAR0290HEAR0289HEAR2695
GURA351605 GURA_0208GURA_2255GURA_1167GURA_1165GURA_3685GURA_4274GURA_0955
GTHE420246 GTNG_2443GTNG_2593GTNG_0998GTNG_0996GTNG_2558GTNG_2728
GSUL243231 GSU_0030GSU_1794GSU_0864GSU_0866GSU_2544GSU_0436GSU_0521
GMET269799 GMET_3535GMET_1875GMET_1164GMET_1166GMET_0896GMET_3400GMET_3034
GKAU235909 GK2507GK2665GK1133GK1131GK2628GK2823
ESP42895 ENT638_3361ENT638_3360ENT638_3359ENT638_3358ENT638_3357ENT638_3356ENT638_3365
EFER585054 EFER_2894EFER_2893EFER_2892EFER_2891EFER_2890EFER_2889EFER_2902
ECOO157 YGGWYGGVYGGUYGGTYGGSYGGRYGGH
ECOL83334 ECS3831ECS3830ECS3829ECS3828ECS3826ECS3827ECS3836
ECOL585397 ECED1_3418ECED1_3417ECED1_3416ECED1_3415ECED1_3414ECED1_3413ECED1_3423
ECOL585057 ECIAI39_3373ECIAI39_3372ECIAI39_3371ECIAI39_3370ECIAI39_3369ECIAI39_3368ECIAI39_3384
ECOL585056 ECUMN_3307ECUMN_3306ECUMN_3305ECUMN_3304ECUMN_3303ECUMN_3302ECUMN_3315
ECOL585055 EC55989_3248EC55989_3247EC55989_3246EC55989_3245EC55989_3244EC55989_3243EC55989_3253
ECOL585035 ECS88_3237ECS88_3236ECS88_3235ECS88_3234ECS88_3233ECS88_3232ECS88_3242
ECOL585034 ECIAI1_3088ECIAI1_3087ECIAI1_3086ECIAI1_3085ECIAI1_3084ECIAI1_3083ECIAI1_3093
ECOL481805 ECOLC_0759ECOLC_0760ECOLC_0761ECOLC_0762ECOLC_0763ECOLC_0764ECOLC_0754
ECOL469008 ECBD_0785ECBD_0786ECBD_0787ECBD_0788ECBD_0789ECBD_0790ECBD_0779
ECOL439855 ECSMS35_3097ECSMS35_3096ECSMS35_3095ECSMS35_3094ECSMS35_3093ECSMS35_3092ECSMS35_3103
ECOL413997 ECB_02785ECB_02784ECB_02783ECB_02782ECB_02781ECB_02780ECB_02790
ECOL409438 ECSE_3223ECSE_3222ECSE_3221ECSE_3220ECSE_3219ECSE_3218ECSE_3229
ECOL405955 APECO1_3566APECO1_3567APECO1_3568APECO1_3569APECO1_3570APECO1_3571APECO1_3561
ECOL364106 UTI89_C3344UTI89_C3343UTI89_C3342UTI89_C3341UTI89_C3340UTI89_C3339UTI89_C3350
ECOL362663 ECP_2949ECP_2948ECP_2947ECP_2946ECP_2945ECP_2944ECP_2954
ECOL331111 ECE24377A_3299ECE24377A_3298ECE24377A_3297ECE24377A_3296ECE24377A_3295ECE24377A_3294ECE24377A_3305
ECOL316407 ECK2950:JW2922:B2955ECK2949:JW2921:B2954ECK2948:JW5479:B2953ECK2947:JW2919:B2952ECK2946:JW2918:B2951ECK2945:JW2917:B2950ECK2955:JW2927:B2960
ECOL199310 C3541C3540C3539C3538C3537C3536C3547
ECAR218491 ECA3632ECA3631ECA3630ECA3629ECA3627ECA3626ECA0977
DRED349161 DRED_2500DRED_2683DRED_0717DRED_0714DRED_0712DRED_1035
DPSY177439 DP0716DP0707DP0789DP0787DP2780DP1694
DOLE96561 DOLE_3018DOLE_0374DOLE_0289DOLE_3054DOLE_1179DOLE_3053
DARO159087 DARO_3853DARO_3852DARO_3887DARO_3886DARO_3884DARO_3883DARO_3860
CVIO243365 CV_0927CV_0926CV_0176CV_0178CV_0179CV_3786
CSAL290398 CSAL_3308CSAL_3307CSAL_3056CSAL_3054CSAL_3053CSAL_3145
CPSY167879 CPS_3668CPS_3667CPS_3665CPS_3663CPS_3662CPS_4146
CJAP155077 CJA_0123CJA_0122CJA_0091CJA_0090CJA_0088CJA_0087CJA_3495
BBRO257310 BB2955BB2956BB4379BB2871BB0791BB0510
AVAR240292 AVA_2223AVA_2368AVA_3894AVA_3109AVA_2899AVA_0375AVA_4784
ASP76114 C1A39C1A234EBA1762EBA1764EBA1768EBA1770C1A43
ASP62977 ACIAD0432ACIAD0526ACIAD3031ACIAD0913ACIAD0912ACIAD1302
ASP62928 AZO3965AZO3964AZO3464AZO3465AZO3467AZO3468AZO3968
ASP232721 AJS_0921AJS_0922AJS_3242AJS_0421AJS_0420AJS_1981
ASAL382245 ASA_3447ASA_3446ASA_3628ASA_3629ASA_3631ASA_3632ASA_0835
APLE434271 APJL_0858APJL_0491APJL_1398APJL_1399APJL_0052APJL_1401
APLE416269 APL_0847APL_0464APL_1380APL_1381APL_0052APL_1383
AMAR329726 AM1_1283AM1_4672AM1_1489AM1_5365AM1_0418AM1_1930
AHYD196024 AHA_0845AHA_0846AHA_3661AHA_3662AHA_3664AHA_3665AHA_3482
AFER243159 AFE_0755AFE_0759AFE_2768AFE_2767AFE_2765AFE_2764AFE_2757
AEHR187272 MLG_2448MLG_2447MLG_0339MLG_0341MLG_0342MLG_0033
ADEH290397 ADEH_0241ADEH_3360ADEH_1087ADEH_2503ADEH_0623ADEH_3785
ABOR393595 ABO_2580ABO_2578ABO_2667ABO_2669ABO_2670ABO_2573
AAVE397945 AAVE_3577AAVE_3578AAVE_1212AAVE_0638AAVE_0637AAVE_3033


Organism features enriched in list (features available for 149 out of the 154 orgs in the list)
Feature    Pvalue       Num occurrences in list  Total num occurrences  
Arrangment:Chains 0.0000325992
Disease:Bubonic_plague 0.000258366
Disease:Dysentery 0.000258366
Disease:Gastroenteritis 0.00011711013
Disease:Legionnaire's_disease 0.004139344
Endospores:No 4.348e-632211
Endospores:Yes 0.0015843553
GC_Content_Range4:0-40 1.367e-2110213
GC_Content_Range4:40-60 1.932e-20105224
GC_Content_Range7:30-40 8.395e-1410166
GC_Content_Range7:40-50 0.000097546117
GC_Content_Range7:50-60 1.864e-1359107
Genome_Size_Range5:0-2 1.463e-221155
Genome_Size_Range5:4-6 5.453e-1789184
Genome_Size_Range9:1-2 7.337e-181128
Genome_Size_Range9:2-3 0.003668420120
Genome_Size_Range9:4-5 1.127e-74696
Genome_Size_Range9:5-6 1.655e-74388
Genome_Size_Range9:6-8 0.00402731738
Gram_Stain:Gram_Neg 1.186e-19130333
Gram_Stain:Gram_Pos 1.130e-183150
Habitat:Host-associated 0.001058138206
Habitat:Multiple 0.001043660178
Motility:No 7.308e-1111151
Motility:Yes 1.319e-12105267
Oxygen_Req:Anaerobic 0.000113012102
Oxygen_Req:Facultative 1.002e-1084201
Shape:Coccus 1.793e-7482
Shape:Rod 7.023e-11121347
Temp._range:Psychrophilic 3.869e-699



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ORGANISMS CONTAINING AT MOST 1 GENES FROM THE GROUP:

Total number of orgs: 130
Effective number of orgs (counting one per cluster within 468 clusters): 114

Organism list
Homologs in each organism in the list
Features enriched in organism list


Follow (ncbi) link, when present, to find the set of organism features for each organism
Org ID  Org Name  # genes in group found in org  
WPIP955 Wolbachia pipientis1
WPIP80849 Wolbachia endosymbiont of Brugia malayi0
UURE95667 Ureaplasma urealyticum serovar 130
UURE95664 Ureaplasma urealyticum serovar 100
UPAR505682 ncbi Ureaplasma parvum serovar 3 str. ATCC 278150
UMET351160 ncbi uncultured methanogenic archaeon RC-I0
TWHI218496 ncbi Tropheryma whipplei TW08/270
TWHI203267 ncbi Tropheryma whipplei Twist0
TVOL273116 ncbi Thermoplasma volcanium GSS10
TPEN368408 ncbi Thermofilum pendens Hrk 50
TPAL243276 ncbi Treponema pallidum pallidum Nichols1
TKOD69014 ncbi Thermococcus kodakarensis KOD11
TACI273075 ncbi Thermoplasma acidophilum DSM 17280
STOK273063 ncbi Sulfolobus tokodaii 70
SSOL273057 ncbi Sulfolobus solfataricus P20
SMAR399550 ncbi Staphylothermus marinus F11
SACI330779 ncbi Sulfolobus acidocaldarius DSM 6390
RCAN293613 ncbi Rickettsia canadensis McKiel1
PTOR263820 ncbi Picrophilus torridus DSM 97900
PRUM264731 ncbi Prevotella ruminicola 230
PMAR93060 ncbi Prochlorococcus marinus MIT 92150
PMAR74546 ncbi Prochlorococcus marinus MIT 93121
PMAR59920 ncbi Prochlorococcus marinus NATL2A1
PMAR167555 ncbi Prochlorococcus marinus NATL1A1
PMAR167546 ncbi Prochlorococcus marinus MIT 93011
PMAR167542 ncbi Prochlorococcus marinus MIT 95150
PMAR167540 Prochlorococcus marinus pastoris MED4ax0
PMAR146891 ncbi Prochlorococcus marinus AS96010
PISL384616 ncbi Pyrobaculum islandicum DSM 41840
PINT246198 Prevotella intermedia 171
PHOR70601 ncbi Pyrococcus horikoshii OT30
PGIN242619 ncbi Porphyromonas gingivalis W831
PFUR186497 ncbi Pyrococcus furiosus DSM 36381
PDIS435591 ncbi Parabacteroides distasonis ATCC 85031
PAST100379 Onion yellows phytoplasma0
PARS340102 ncbi Pyrobaculum arsenaticum DSM 135140
PAER178306 ncbi Pyrobaculum aerophilum IM20
PABY272844 ncbi Pyrococcus abyssi GE51
OTSU357244 ncbi Orientia tsutsugamushi Boryong0
NSEN222891 ncbi Neorickettsia sennetsu Miyayama1
NPHA348780 ncbi Natronomonas pharaonis DSM 21600
MTHE349307 ncbi Methanosaeta thermophila PT0
MTHE187420 ncbi Methanothermobacter thermautotrophicus Delta H0
MSYN262723 ncbi Mycoplasma synoviae 530
MSTA339860 ncbi Methanosphaera stadtmanae DSM 30910
MSED399549 ncbi Metallosphaera sedula DSM 53480
MPUL272635 ncbi Mycoplasma pulmonis UAB CTIP0
MPNE272634 ncbi Mycoplasma pneumoniae M1290
MPEN272633 ncbi Mycoplasma penetrans HF-20
MMYC272632 ncbi Mycoplasma mycoides mycoides SC str. PG10
MMOB267748 ncbi Mycoplasma mobile 163K1
MMAZ192952 ncbi Methanosarcina mazei Go11
MMAR444158 ncbi Methanococcus maripaludis C60
MMAR426368 ncbi Methanococcus maripaludis C70
MMAR402880 ncbi Methanococcus maripaludis C50
MMAR368407 ncbi Methanoculleus marisnigri JR10
MMAR267377 ncbi Methanococcus maripaludis S20
MLAB410358 ncbi Methanocorpusculum labreanum Z0
MKAN190192 ncbi Methanopyrus kandleri AV190
MJAN243232 ncbi Methanocaldococcus jannaschii DSM 26610
MHYO295358 ncbi Mycoplasma hyopneumoniae 2320
MHYO262722 ncbi Mycoplasma hyopneumoniae 74481
MHYO262719 ncbi Mycoplasma hyopneumoniae J1
MHUN323259 ncbi Methanospirillum hungatei JF-10
MGEN243273 ncbi Mycoplasma genitalium G370
MFLO265311 ncbi Mesoplasma florum L10
MCAP340047 ncbi Mycoplasma capricolum capricolum ATCC 273430
MBUR259564 ncbi Methanococcoides burtonii DSM 62420
MBAR269797 ncbi Methanosarcina barkeri Fusaro0
MART243272 ncbi Mycoplasma arthritidis 158L3-10
MAEO419665 ncbi Methanococcus aeolicus Nankai-30
MACE188937 ncbi Methanosarcina acetivorans C2A0
LPLA220668 ncbi Lactobacillus plantarum WCFS11
LMES203120 ncbi Leuconostoc mesenteroides mesenteroides ATCC 82931
LBRE387344 ncbi Lactobacillus brevis ATCC 3671
LBIF456481 ncbi Leptospira biflexa serovar Patoc strain Patoc 1 (Paris)0
LBIF355278 ncbi Leptospira biflexa serovar Patoc strain Patoc 1 (Ames)0
IHOS453591 ncbi Ignicoccus hospitalis KIN4/I0
HWAL362976 ncbi Haloquadratum walsbyi DSM 167900
HSP64091 ncbi Halobacterium sp. NRC-10
HSAL478009 ncbi Halobacterium salinarum R10
HPYL85963 ncbi Helicobacter pylori J991
HPYL357544 ncbi Helicobacter pylori HPAG11
HPY ncbi Helicobacter pylori 266951
HMUK485914 ncbi Halomicrobium mukohataei DSM 122860
HMAR272569 ncbi Haloarcula marismortui ATCC 430490
HBUT415426 ncbi Hyperthermus butylicus DSM 54560
HACI382638 ncbi Helicobacter acinonychis Sheeba1
FMAG334413 ncbi Finegoldia magna ATCC 293281
FJOH376686 ncbi Flavobacterium johnsoniae UW1011
ERUM302409 ncbi Ehrlichia ruminantium Gardel0
ERUM254945 ncbi Ehrlichia ruminantium Welgevonden0
ECHA205920 ncbi Ehrlichia chaffeensis Arkansas0
ECAN269484 ncbi Ehrlichia canis Jake0
CTRA471473 ncbi Chlamydia trachomatis L2b/UCH-1/proctitis1
CTRA471472 ncbi Chlamydia trachomatis 434/Bu1
CSUL444179 ncbi Candidatus Sulcia muelleri GWSS0
CMUR243161 ncbi Chlamydia muridarum Nigg0
CMIC31964 ncbi Clavibacter michiganensis sepedonicus1
CMET456442 ncbi Candidatus Methanoregula boonei 6A80
CMAQ397948 ncbi Caldivirga maquilingensis IC-1670
CKOR374847 ncbi Candidatus Korarchaeum cryptofilum OPF81
CJEJ407148 ncbi Campylobacter jejuni jejuni 811161
CJEJ360109 ncbi Campylobacter jejuni doylei 269.971
CJEJ354242 ncbi Campylobacter jejuni jejuni 81-1761
CJEJ195099 ncbi Campylobacter jejuni RM12211
CJEJ192222 ncbi Campylobacter jejuni jejuni NCTC 111681
CFET360106 ncbi Campylobacter fetus fetus 82-401
CFEL264202 ncbi Chlamydophila felis Fe/C-561
CCHL340177 ncbi Chlorobium chlorochromatii CaD31
CBLO291272 ncbi Candidatus Blochmannia pennsylvanicus BPEN0
CBLO203907 ncbi Candidatus Blochmannia floridanus0
BXEN266265 ncbi Burkholderia xenovorans LB4000
BTUR314724 ncbi Borrelia turicatae 91E1350
BTHE226186 ncbi Bacteroides thetaiotaomicron VPI-54821
BHER314723 ncbi Borrelia hermsii DAH0
BGAR290434 ncbi Borrelia garinii PBi0
BFRA295405 ncbi Bacteroides fragilis YCH461
BFRA272559 ncbi Bacteroides fragilis NCTC 93431
BCIC186490 Candidatus Baumannia cicadellinicola1
BBUR224326 ncbi Borrelia burgdorferi B310
BAPH372461 ncbi Buchnera aphidicola Cc (Cinara cedri)1
BAFZ390236 ncbi Borrelia afzelii PKo0
AYEL322098 ncbi Aster yellows witches-broom phytoplasma AYWB0
AURANTIMONAS Aurantimonas manganoxydans SI85-9A10
APHA212042 ncbi Anaplasma phagocytophilum HZ0
APER272557 ncbi Aeropyrum pernix K10
AMAR234826 ncbi Anaplasma marginale St. Maries0
ALAI441768 ncbi Acholeplasma laidlawii PG-8A0
AFUL224325 ncbi Archaeoglobus fulgidus DSM 43040


Names of the homologs of the genes in the group in each of these orgs
  G7531   G7530   G7529   G7528   G7527   G7526   EG11779   
WPIP955 WD_1091
WPIP80849
UURE95667
UURE95664
UPAR505682
UMET351160
TWHI218496
TWHI203267
TVOL273116
TPEN368408
TPAL243276 TP_0464
TKOD69014 TK0768
TACI273075
STOK273063
SSOL273057
SMAR399550 SMAR_0527
SACI330779
RCAN293613 A1E_00965
PTOR263820
PRUM264731
PMAR93060
PMAR74546 PMT9312_1188
PMAR59920 PMN2A_1645
PMAR167555 NATL1_03591
PMAR167546 P9301ORF_0706
PMAR167542
PMAR167540
PMAR146891
PISL384616
PINT246198 PIN_A1352
PHOR70601
PGIN242619 PG_2126
PFUR186497 PF1765
PDIS435591 BDI_0544
PAST100379
PARS340102
PAER178306
PABY272844 PAB7122
OTSU357244
NSEN222891 NSE_0922
NPHA348780
MTHE349307
MTHE187420
MSYN262723
MSTA339860
MSED399549
MPUL272635
MPNE272634
MPEN272633
MMYC272632
MMOB267748 MMOB4960
MMAZ192952 MM1675
MMAR444158
MMAR426368
MMAR402880
MMAR368407
MMAR267377
MLAB410358
MKAN190192
MJAN243232
MHYO295358
MHYO262722 MHP7448_0465
MHYO262719 MHJ_0462
MHUN323259
MGEN243273
MFLO265311
MCAP340047
MBUR259564
MBAR269797
MART243272
MAEO419665
MACE188937
LPLA220668 LP_2267
LMES203120 LEUM_0610
LBRE387344 LVIS_1213
LBIF456481
LBIF355278
IHOS453591
HWAL362976
HSP64091
HSAL478009
HPYL85963 JHP0684
HPYL357544 HPAG1_0732
HPY HP0747
HMUK485914
HMAR272569
HBUT415426
HACI382638 HAC_0671
FMAG334413 FMG_0636
FJOH376686 FJOH_3449
ERUM302409
ERUM254945
ECHA205920
ECAN269484
CTRA471473 CTLON_0303
CTRA471472 CTL0308
CSUL444179
CMUR243161
CMIC31964 CMS1377
CMET456442
CMAQ397948
CKOR374847 KCR_0466
CJEJ407148 C8J_0791
CJEJ360109 JJD26997_0993
CJEJ354242 CJJ81176_0860
CJEJ195099 CJE_0931
CJEJ192222 CJ0844C
CFET360106 CFF8240_1145
CFEL264202 CF0239
CCHL340177 CAG_1350
CBLO291272
CBLO203907
BXEN266265
BTUR314724
BTHE226186 BT_1332
BHER314723
BGAR290434
BFRA295405 BF2949
BFRA272559 BF2825
BCIC186490 BCI_0479
BBUR224326
BAPH372461 BCC_361
BAFZ390236
AYEL322098
AURANTIMONAS
APHA212042
APER272557
AMAR234826
ALAI441768
AFUL224325


Organism features enriched in list (features available for 121 out of the 130 orgs in the list)
Feature    Pvalue       Num occurrences in list  Total num occurrences  
Arrangment:Chains 0.00355681092
Arrangment:Pairs 0.00004619112
Arrangment:Singles 0.000121177286
Endospores:No 8.378e-971211
GC_Content_Range4:0-40 3.754e-768213
GC_Content_Range4:60-100 4.509e-89145
GC_Content_Range7:0-30 3.900e-82647
GC_Content_Range7:40-50 0.009162333117
GC_Content_Range7:50-60 0.000930811107
GC_Content_Range7:60-70 1.132e-78134
Genome_Size_Range5:0-2 9.578e-2882155
Genome_Size_Range5:2-4 0.002994429197
Genome_Size_Range5:4-6 3.189e-147184
Genome_Size_Range5:6-10 0.0041140347
Genome_Size_Range9:0-1 9.435e-152427
Genome_Size_Range9:1-2 2.663e-1358128
Genome_Size_Range9:4-5 7.062e-7496
Genome_Size_Range9:5-6 6.578e-7388
Genome_Size_Range9:6-8 0.0058603238
Gram_Stain:Gram_Neg 0.001234955333
Gram_Stain:Gram_Pos 2.518e-98150
Habitat:Aquatic 0.00246372991
Habitat:Multiple 2.025e-617178
Habitat:Specialized 0.00051322153
Habitat:Terrestrial 0.0051567131
Optimal_temp.:100 0.008764933
Optimal_temp.:35-40 0.008764933
Optimal_temp.:85 0.001783244
Oxygen_Req:Aerobic 0.001001925185
Oxygen_Req:Anaerobic 1.115e-640102
Oxygen_Req:Facultative 0.000016423201
Oxygen_Req:Microaerophilic 0.0038051918
Pathogenic_in:Ruminant 0.008764933
Salinity:Extreme_halophilic 0.004832457
Shape:Irregular_coccus 2.493e-91517
Shape:Pleomorphic 0.001297668
Shape:Rod 9.150e-1732347
Shape:Sphere 2.708e-91619
Shape:Spiral 0.00001481834
Temp._range:Hyperthermophilic 2.843e-81723
Temp._range:Mesophilic 0.000029582473



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ORGANISMS ENRICHED FOR GROUP:

Total number of orgs: 1
Effective number of orgs (counting one per cluster within 468 clusters): 1

Organism list
Homologs in each organism in the list
Features enriched in organism list


Follow (ncbi) link, when present, to find the set of organism features for each organism
Org ID  Org Name    Pvalue       # genes in tgt genome found in org  # genes in group found in org  
TELO197221 ncbi Thermosynechococcus elongatus BP-1 0.00324018747


Names of the homologs of the genes in the group in each of these orgs
  G7531   G7530   G7529   G7528   G7527   G7526   EG11779   
TELO197221 TLL1192TLL1797TSR1994TSR0534TLL1037TLL0121TLL1983


Organism features enriched in list (features available for 1 out of the 1 orgs in the list)
Feature    Pvalue       Num occurrences in list  Total num occurrences  
Optimal_temp.:55 0.003430512



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ORGANISMS DEPLETED FOR GROUP:




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PHYLOGENETIC PROFILE SIMILARITY WITH KNOWN PATHWAYS:

Pathways or complexes with absolute value of Pearson coefficient with respect to candidate larger than 0.4 are listed below
The candidate is assumed to exist in orgs listed in section List of organisms containing most genes from the group


Pathway or complex  # Orgs containing it  # of those orgs also containing candidate  Pearson Coeff  
PWY0-1241 (ADP-L-glycero-β-D-manno-heptose biosynthesis)2181280.5782
COBALSYN-PWY (adenosylcobalamin salvage from cobinamide I)1951150.5360
AST-PWY (arginine degradation II (AST pathway))120850.5221
GLYCOCAT-PWY (glycogen degradation I)2461290.5191
ECASYN-PWY (enterobacterial common antigen biosynthesis)1911090.4986
PWY-5918 (heme biosynthesis I)2721330.4934
PWY-5111 (CMP-KDO biosynthesis II (from D-arabinose 5-phosphate))3001390.4829
PWY-5913 (TCA cycle variation IV)3011380.4735
LIPA-CORESYN-PWY (Lipid A-core biosynthesis)1761000.4669
HEME-BIOSYNTHESIS-II (heme biosynthesis from uroporphyrinogen-III I)2861330.4652
PWY-5755 (4-hydroxybenzoate biosynthesis II (bacteria and fungi))81610.4534
PWY-1269 (CMP-KDO biosynthesis I)3251410.4519
NAGLIPASYN-PWY (lipid IVA biosynthesis)3481460.4494
PWY-5386 (methylglyoxal degradation I)3051350.4437
PHOSLIPSYN-PWY (phospholipid biosynthesis I)2901310.4425
PWY4FS-7 (phosphatidylglycerol biosynthesis I (plastidic))2911310.4405
PWY0-1319 (CDP-diacylglycerol biosynthesis II)2961320.4384
KDO-LIPASYN-PWY (KDO2-lipid A biosynthesis I)2251120.4368
GLUTATHIONESYN-PWY (glutathione biosynthesis)3391420.4348
PWY-4041 (γ-glutamyl cycle)2791260.4268
PWY-5861 (superpathway of demethylmenaquinone-8 biosynthesis)50430.4196
ENTNER-DOUDOROFF-PWY (Entner-Doudoroff pathway I)2491150.4060
GLYCOLYSIS-E-D (superpathway of glycolysis and Entner-Doudoroff)2491150.4060
GALACTITOLCAT-PWY (galactitol degradation)73530.4044
GLUCONSUPER-PWY (D-gluconate degradation)2291090.4043
P184-PWY (protocatechuate degradation I (meta-cleavage pathway))94620.4030
PWY-6196 (serine racemization)102650.4001



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PAIRWISE GENOME CONTEXT SCORE MATRIX:

  G7530   G7529   G7528   G7527   G7526   EG11779   
G75310.9998250.999020.9991960.9992320.9990860.999135
G75300.999120.9992310.9990030.9989660.998971
G75290.9996360.9993520.9991770.998902
G75280.9996720.9994990.999118
G75270.9997330.998582
G75260.998726
EG11779



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PAIRWISE BLAST SCORES:

  G7531   G7530   G7529   G7528   G7527   G7526   EG11779   
G75310.0f0------
G7530-0.0f0-----
G7529--0.0f0----
G7528---0.0f0---
G7527----0.0f0--
G7526-----0.0f0-
EG11779------0.0f0



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PATHWAYS OR PROTEIN COMPLEX MATCHES IN TARGET ORG:

For each case, all genes involved in the pathway or complex are listed. For each gene we list: a tag indicating whether the gene is part of the candidate list or not, the average and the minimum scores of the gene to the candidate list, the gene name, and its product names.



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GENOME CONTEXT INFORMATION:

Each row corresponds to a replicon in an organism, each column to a gene in the candidate. The second column indicates whether the organims was included in the list used to compute the genome context scores or not. Some organisms are not included because they are phylogenetically too similar to others already in the list.
The number in the matrix indicate the position of the homolog of the gene in the replicon. All numbers are relative to the smaller one, which is assigned a position of zero. Two columns with the same number indicate that the two genes matched the same gene in that organism.

Genome browser links for gene clusters

The links below opens a genome browser BioCyc page for each cluster of genes in the target genome. These pages shows the central gene of the cluster in the target genome and its best homolog in the reference genomes, for the genomes that contain homologs for at least 75% of the genes in the group. Only one genome per phylogenetic cluster of organisms is shown, to keep the list smaller.

G7526 G7527 G7528 G7529 G7530 G7531 (centered at G7529)
EG11779 (centered at EG11779)


ORG:REPLICON:CIRC?\GENE  IN REF LIST  G7531   G7530   G7529   G7528   G7527   G7526   EG11779   
420/623406/623154/623246/623396/623241/623406/623
AAEO224324:0:Tyes-101--1534810
AAUR290340:2:Tyes-0----976
AAVE397945:0:Tyes28872888-562102359
ABAC204669:0:Tyes-13552838-28370-
ABAU360910:0:Tyes14771478-25401148-0
ABOR393595:0:Tyes75-9496970
ABUT367737:0:Tyes---3450-131
ACAU438753:0:Tyes4332--3340265-0
ACEL351607:0:Tyes0901--233539-
ACRY349163:8:Tyes639---1006-0
ADEH290397:0:Tyes03150851-22813853580
AEHR187272:0:Tyes23962395-3023043050
AFER243159:0:Tyes0419871986198419831976
AHYD196024:0:Tyes0127212722272427252560
AMAR329726:9:Tyes8534213-1056489701491
AMET293826:0:Tyes20460--18062469-
ANAE240017:0:Tyes-0--168-157
AORE350688:0:Tyes6680-8468441073-
APLE416269:0:Tyes802420135113520-1354
APLE434271:0:Tno778427134313440-1346
ASAL382245:5:Tyes2500249926792680268226830
ASP1667:3:Tyes-1010--0-2217
ASP232721:2:Tyes492493-2732101508
ASP62928:0:Tyes5025010134505
ASP62977:0:Tyes081-2420454453824
ASP76114:2:Tyes3393380134341
AVAR240292:3:Tyes1857200335332743253404424
BABO262698:1:Tno0--17271555-1887
BAMB339670:3:Tno238239-1880-175
BAMB398577:3:Tno218219-1690-159
BAMY326423:0:Tyes8581021--0-1179
BANT260799:0:Tno465626-02-843
BANT261594:2:Tno487648-02-868
BANT568206:2:Tyes39034070-20-4298
BANT592021:2:Tno490657-02-883
BAPH198804:0:Tyes1---0-2
BAPH372461:0:Tyes0------
BBAC264462:0:Tyes--0-33134-
BBAC360095:0:Tyes1148-209-0-1063
BBRO257310:0:Tyes24592460-390923752800
BCAN483179:1:Tno0--17941602-1954
BCEN331271:2:Tno271272-2220-191
BCEN331272:3:Tyes264265-2170-187
BCER226900:1:Tyes410588-02-787
BCER288681:0:Tno405576-02-790
BCER315749:1:Tyes486640--0-794
BCER405917:1:Tyes436613-02-862
BCER572264:1:Tno418583-02-807
BCIC186490:0:Tyes0------
BCLA66692:0:Tyes01013--696-1138
BFRA272559:1:Tyes----0--
BFRA295405:0:Tno----0--
BHAL272558:0:Tyes01742-12091211-1936
BHEN283166:0:Tyes0-108-1369-158
BJAP224911:0:Fyes124--075-242
BLIC279010:0:Tyes9571194-0---
BLON206672:0:Tyes5550----1391
BMAL243160:1:Tno10-52287-58
BMAL320388:1:Tno477478-4190-412
BMAL320389:1:Tyes10-59622-67
BMEL224914:1:Tno1564---0-1763
BMEL359391:1:Tno0--16611498-1817
BOVI236:1:Tyes0---1401-1700
BPAR257311:0:Tno23562357-32522276-0
BPER257313:0:Tyes249247-15030-2154
BPET94624:0:Tyes17071706-02337-3786
BPSE272560:1:Tyes10-72283-79
BPSE320372:1:Tno10-61307-68
BPSE320373:1:Tno10-71335-98
BPUM315750:0:Tyes8351036-20-1179
BQUI283165:0:Tyes0-98971035-147
BSP107806:2:Tyes1---0-2
BSP36773:2:Tyes288289-2320-204
BSP376:0:Tyes123--219133-0
BSUB:0:Tyes10541350-20-1507
BSUI204722:1:Tyes0--17511576-1918
BSUI470137:0:Tno----0--
BSUI470137:1:Tno0--1606--1768
BTHA271848:1:Tno289290-2320-224
BTHE226186:0:Tyes----0--
BTHU281309:1:Tno412573-02-785
BTHU412694:1:Tno366527--0-718
BTRI382640:1:Tyes0-113-1900-165
BVIE269482:7:Tyes219220-1730-157
BWEI315730:4:Tyes436592-02-795
CABO218497:0:Tyes--0---489
CACE272562:1:Tyes01391--829406-
CAULO:0:Tyes97-3628-3751-0
CBEI290402:0:Tyes4670--1218754-
CBOT36826:1:Tno14971788--01072-
CBOT441770:0:Tyes14081767--0904-
CBOT441771:0:Tno13261625--0871-
CBOT441772:1:Tno14301798--01024-
CBOT498213:1:Tno14931783--0980-
CBOT508765:1:Tyes4340--1969729-
CBOT515621:2:Tyes16281916--01187-
CBOT536232:0:Tno16061906--01108-
CBUR227377:1:Tyes5320-19661968--
CBUR360115:1:Tno5280-19541956--
CBUR434922:2:Tno336900010271029--
CCAV227941:1:Tyes--0---521
CCHL340177:0:Tyes----0--
CCON360104:2:Tyes-----1210
CCUR360105:0:Tyes---146-0110
CDES477974:0:Tyes-547-4504530-
CDIF272563:1:Tyes0848--1581050-
CDIP257309:0:Tyes0133--23-452
CEFF196164:0:Fyes-0----308
CFEL264202:1:Tyes------0
CFET360106:0:Tyes-----0-
CGLU196627:0:Tyes0214----586
CHOM360107:1:Tyes---92-3380
CHUT269798:0:Tyes0---2458--
CHYD246194:0:Tyes-0-16781681302-
CJAP155077:0:Tyes363543103342
CJEI306537:0:Tyes476368----0
CJEJ192222:0:Tyes---0---
CJEJ195099:0:Tno---0---
CJEJ354242:2:Tyes---0---
CJEJ360109:0:Tyes---0---
CJEJ407148:0:Tno---0---
CKLU431943:1:Tyes02527--284428-
CKOR374847:0:Tyes--0----
CMIC31964:2:Tyes----0--
CMIC443906:2:Tyes-0--578--
CNOV386415:0:Tyes551878--0321-
CPEL335992:0:Tyes----2870-
CPER195102:1:Tyes275530--870-
CPER195103:0:Tno263472--840-
CPER289380:3:Tyes265463--850-
CPHY357809:0:Tyes19240--1972--
CPNE115711:1:Tyes117-0----
CPNE115713:0:Tno0-114----
CPNE138677:0:Tno0-116----
CPNE182082:0:Tno0-124----
CPRO264201:0:Fyes612-0-1259-803
CPSY167879:0:Tyes65-310470
CRUT413404:0:Tyes-0--3-716
CSAL290398:0:Tyes258257-31094
CSP501479:7:Fyes312-0----
CSP501479:8:Fyes----0-2632
CSP78:2:Tyes146145--5044-0
CTEP194439:0:Tyes--18-0--
CTET212717:0:Tyes8401164--4700-
CTRA471472:0:Tyes0------
CTRA471473:0:Tno0------
CVES412965:0:Tyes10--4-646
CVIO243365:0:Tyes765764-0233707
DARO159087:0:Tyes10353432318
DDES207559:0:Tyes320169616983141--
DETH243164:0:Tyes93447--0156-
DGEO319795:1:Tyes-1936---01817
DHAF138119:0:Tyes755844--5030-
DNOD246195:0:Tyes0521--715331074
DOLE96561:0:Tyes276385028009012799-
DPSY177439:2:Tyes110959321361023-
DRAD243230:3:Tyes-0---17521474
DRED349161:0:Tyes17901979520319-
DSHI398580:5:Tyes3461---0-999
DSP216389:0:Tyes97365--0128-
DSP255470:0:Tno98363--0129-
DVUL882:1:Tyes299130871317-01205-
ECAR218491:0:Tyes2696269526942693269126900
ECOL199310:0:Tno54321011
ECOL316407:0:Tno54321010
ECOL331111:6:Tno54321011
ECOL362663:0:Tno54321010
ECOL364106:1:Tno54321011
ECOL405955:2:Tyes54321010
ECOL409438:6:Tyes54321011
ECOL413997:0:Tno54321010
ECOL439855:4:Tno54321011
ECOL469008:0:Tno678910110
ECOL481805:0:Tno56789100
ECOL585034:0:Tno54321010
ECOL585035:0:Tno54321010
ECOL585055:0:Tno54321010
ECOL585056:2:Tno54321013
ECOL585057:0:Tno54321014
ECOL585397:0:Tno54321010
ECOL83334:0:Tno54321010
ECOLI:0:Tno54321010
ECOO157:0:Tno54321010
EFAE226185:3:Tyes1760-----
EFER585054:1:Tyes54321013
ELIT314225:0:Tyes01--1180-1663
ESP42895:1:Tyes5432109
FALN326424:0:Tyes4870--681--
FJOH376686:0:Tyes----0--
FMAG334413:1:Tyes----0--
FNOD381764:0:Tyes----0124874
FNUC190304:0:Tyes1076---10770-
FPHI484022:1:Tyes330554-0-334636
FRANT:0:Tno01381-85-4-
FSP106370:0:Tyes-0--555--
FSP1855:0:Tyes-562--0--
FSUC59374:0:Tyes----3340-
FTUL351581:0:Tno10790-1206---
FTUL393011:0:Tno9560-1067--66
FTUL393115:0:Tyes01354-83-4-
FTUL401614:0:Tyes14631306-0-14591239
FTUL418136:0:Tno0167-1460-4-
FTUL458234:0:Tno9920-1103--67
GBET391165:0:Tyes0--2502315-2370
GFOR411154:0:Tyes0---593-49
GKAU235909:1:Tyes13961554-2015171712
GMET269799:1:Tyes2641987263265025072140
GOXY290633:5:Tyes3070--309--
GSUL243231:0:Tyes017538298312502403487
GTHE420246:1:Tyes14141564-2015291699
GURA351605:0:Tyes0204796496234624044744
GVIO251221:0:Tyes258403347-1732162-
HACI382638:1:Tyes------0
HARS204773:0:Tyes17201721-2334102267
HAUR316274:2:Tyes530--609--
HCHE349521:0:Tyes109431012
HDUC233412:0:Tyes12009174224210-419
HHAL349124:0:Tyes66466564164063802098
HHEP235279:0:Tyes---01122--
HINF281310:0:Tyes385177-9400-262
HINF374930:0:Tyes0204-1080375-119
HINF71421:0:Tno356159-9230-236
HMOD498761:0:Tyes212701765-1759216-
HNEP81032:0:Tyes31473148--3388-0
HPY:0:Tno------0
HPYL357544:1:Tyes------0
HPYL85963:0:Tno------0
HSOM205914:1:Tyes01153415351099-1543
HSOM228400:0:Tno16771678148714880-1494
ILOI283942:0:Tyes76-3108
JSP290400:1:Tyes0---214-509
JSP375286:0:Tyes10111010-2673102625
KPNE272620:2:Tyes5432108
KRAD266940:2:Fyes3590--58075540
LACI272621:0:Tyes-0----1127
LBOR355276:1:Tyes-0----2509
LBOR355277:1:Tno-2448----0
LBRE387344:2:Tyes-0-----
LCAS321967:1:Tyes7480-----
LCHO395495:0:Tyes3223230-125112521542
LDEL321956:0:Tyes-46----0
LDEL390333:0:Tyes-51----0
LGAS324831:0:Tyes-0----965
LHEL405566:0:Tyes-0----957
LINN272626:1:Tno3110--961-454
LINT189518:1:Tyes24433553----0
LINT267671:1:Tno1267416----0
LINT363253:3:Tyes17436--0--
LJOH257314:0:Tyes-0----979
LLAC272622:5:Tyes428569----0
LLAC272623:0:Tyes390532----0
LMES203120:1:Tyes-0-----
LMON169963:0:Tno2380----377
LMON265669:0:Tyes2460----388
LPLA220668:0:Tyes-0-----
LPNE272624:0:Tno1870199922301532153015290
LPNE297245:1:Fno1757188121211468146614650
LPNE297246:0:Fyes--0----
LPNE297246:1:Fyes17642004-1455145314520
LPNE400673:0:Tno317486-3101336
LREU557436:0:Tyes-0--679-751
LSAK314315:0:Tyes8700-----
LSPH444177:1:Tyes22292465--0-2628
LWEL386043:0:Tyes2970----437
LXYL281090:0:Tyes509415--558-0
MABS561007:1:Tyes1830--531-3031
MAER449447:0:Tyes1755412--522504250
MAQU351348:2:Tyes23-810110
MAVI243243:0:Tyes2240--771-3368
MBOV233413:0:Tno22181177--1977-0
MBOV410289:0:Tno21741170--1933-0
MCAP243233:0:Tyes14801424-2450
MEXT419610:0:Tyes0-173933841189-2919
MFLA265072:0:Tyes02-206620642063191
MGIL350054:3:Tyes22461913----0
MHYO262719:0:Tyes------0
MHYO262722:0:Tno------0
MLEP272631:0:Tyes-161--0-1019
MLOT266835:2:Tyes418---0-1165
MMAG342108:0:Tyes447844774353-0-4448
MMAR394221:0:Tyes-58--0-87
MMAZ192952:0:Tyes----0--
MMOB267748:0:Tyes------0
MPET420662:1:Tyes01--10551056147
MSME246196:0:Tyes42434611--1769-0
MSP164756:1:Tno33123686----0
MSP164757:0:Tno-3662----0
MSP189918:2:Tyes33553740----0
MSP266779:3:Tyes810---0-720
MSP400668:0:Tyes38593858-20-220
MSP409:2:Tyes0--37301316-5057
MSUC221988:0:Tyes14831484431437-0
MTBCDC:0:Tno23381226--2074-0
MTBRV:0:Tno22021150--1958-0
MTHE264732:0:Tyes620-3283251012-
MTUB336982:0:Tno21891161--1956-0
MTUB419947:0:Tyes22751176--2014-0
MVAN350058:0:Tyes36154048----0
MXAN246197:0:Tyes0833--144844844487
NARO279238:0:Tyes17811780----0
NEUR228410:0:Tyes101231227037026
NEUT335283:2:Tyes10180918101999199810
NFAR247156:2:Tyes3310--685-4434
NGON242231:0:Tyes130--15471548334
NHAM323097:2:Tyes122--57969-0
NMEN122586:0:Tno589564--101227
NMEN122587:0:Tyes608593--011225
NMEN272831:0:Tno524494--101094
NMEN374833:0:Tno552521--101171
NMUL323848:3:Tyes105115122643-2
NOCE323261:1:Tyes1391139019431944194619470
NSEN222891:0:Tyes------0
NSP103690:6:Tyes4514464927351587019751366
NSP35761:1:Tyes-197--194402805
NSP387092:0:Tyes--75746-4200
NWIN323098:0:Tyes174--46870-0
OANT439375:4:Tyes----0--
OANT439375:5:Tyes0--809--570
OCAR504832:0:Tyes100--050-203
OIHE221109:0:Tyes498634--0-823
PABY272844:0:Tyes--0----
PACN267747:0:Tyes0766--70-895
PAER208963:0:Tyes45101113140
PAER208964:0:Tno45-1012130
PARC259536:0:Tyes10621788-01061051578
PATL342610:0:Tyes324032393303671366936680
PCAR338963:0:Tyes01941514512300773665
PCRY335284:1:Tyes9872047-01161151828
PDIS435591:0:Tyes----0--
PENT384676:0:Tyes23-79100
PFLU205922:0:Tyes98431011
PFLU216595:1:Tyes87-31010
PFLU220664:0:Tyes98431012
PFUR186497:0:Tyes--0----
PGIN242619:0:Tyes----0--
PHAL326442:1:Tyes20962095-2093209120900
PING357804:0:Tyes2514251325112510250825070
PINT246198:1:Tyes----0--
PLUM243265:0:Fyes67-810110
PLUT319225:0:Tyes--0-140--
PMAR167539:0:Tyes---674--0
PMAR167546:0:Tyes-----0-
PMAR167555:0:Tyes-0-----
PMAR59920:0:Tno-0-----
PMAR74546:0:Tyes-----0-
PMAR74547:0:Tyes-1897-6811970-
PMEN399739:0:Tyes109431017
PMOB403833:0:Tyes----0-29
PMUL272843:1:Tyes15571554120112020-1205
PNAP365044:8:Tyes5425411012177202673
PPEN278197:0:Tyes-554----0
PPRO298386:2:Tyes76431010
PPUT160488:0:Tno87-31010
PPUT351746:0:Tyes87-31010
PPUT76869:0:Tno87-31010
PSP117:0:Tyes-01757--42251518
PSP296591:2:Tyes94194022502285102493
PSP312153:0:Tyes8368351788-1542-0
PSP56811:2:Tyes13590-30159515961469
PSTU379731:0:Tyes98-31017
PSYR205918:0:Tyes01-4674287
PSYR223283:2:Tyes45644563-4560455845570
PTHE370438:0:Tyes890105910631066378-
RAKA293614:0:Fyes0-----993
RALB246199:0:Tyes-0--1168108-
RBEL336407:0:Tyes0-----101
RBEL391896:0:Fno125-----0
RCAN293613:0:Fyes0------
RCAS383372:0:Tyes-322--0--
RCON272944:0:Tno0-----1124
RDEN375451:4:Tyes361---0-3626
RETL347834:5:Tyes0--35173720-9
REUT264198:2:Tyes---0---
REUT264198:3:Tyes17391738--206420630
REUT381666:1:Tyes---0---
REUT381666:2:Tyes01--208820871854
RFEL315456:2:Tyes0-----249
RFER338969:1:Tyes88288101036313031291147
RLEG216596:6:Tyes0-4132-4358-11
RMAS416276:1:Tyes0-----786
RMET266264:1:Tyes---0---
RMET266264:2:Tyes01--207420731841
RPAL258594:0:Tyes0---2482-117
RPAL316055:0:Tyes154---191-0
RPAL316056:0:Tyes265--0224-418
RPAL316057:0:Tyes164--4652088-0
RPAL316058:0:Tyes318--0278-494
RPOM246200:0:Tyes------0
RPOM246200:1:Tyes0-911-3348--
RPRO272947:0:Tyes0-----657
RRIC392021:0:Fno0-----1080
RRIC452659:0:Tyes0-----1108
RRUB269796:1:Tyes351035113397-101903648
RSAL288705:0:Tyes-0----415
RSOL267608:0:Tyes---0---
RSOL267608:1:Tyes14981497--202420230
RSP101510:3:Fyes-349--0-4080
RSP357808:0:Tyes-0--997--
RSPH272943:3:Tyes------0
RSPH272943:4:Tyes385---0--
RSPH349101:1:Tno------0
RSPH349101:2:Tno388---0--
RSPH349102:4:Tyes------0
RSPH349102:5:Tyes2263-0-2730--
RTYP257363:0:Tno0-----668
RXYL266117:0:Tyes----3220858
SACI56780:0:Tyes-7719059042730-
SAGA205921:0:Tno5401124--119-0
SAGA208435:0:Tno5041193----0
SAGA211110:0:Tyes4901222--124-0
SALA317655:1:Tyes10--2797-2911
SARE391037:0:Tyes275002347-2352-710
SAUR158878:1:Tno4320----597
SAUR158879:1:Tno4290----591
SAUR196620:0:Tno5020----658
SAUR273036:0:Tno4290----580
SAUR282458:0:Tno-0----692
SAUR282459:0:Tno-0----595
SAUR359786:1:Tno-0----585
SAUR359787:1:Tno4370----596
SAUR367830:3:Tno-0----639
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SAUR426430:0:Tno-0----578
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