CANDIDATE ID: 268

CANDIDATE ID: 268

NUMBER OF GENES: 7
AVERAGE SCORE:    9.9911238e-1 (range=[0.0,1.0])
AVERAGE MINIMUM BLAST P-VAL:    1.0000000e+0

Gene List
List of organisms containing most genes from the group
    Phylogenetic tree highlighting these organisms (opens new page)
List of organisms containing very few or no genes from the group
List of organisms enriched for group
List of organisms depleted for group
Phylogenetic profile similarity with known pathways
Pairwise genome context scores
Pairwise Blast scores
Pathway or protein complex matches in target organism
Genome context matrix
    Genes and their orthologs in genome browser BioCyc pages



GENE LIST:

- G7530 (rdgB) (b2954)
   Products of gene:
     - G7530-MONOMER (RdgB)
     - CPLX0-7826 (dITP/XTP pyrophosphatase)
       Reactions:
        ITP + H2O  ->  inosine-5'-phosphate + diphosphate + H+
        dITP + H2O  ->  dIMP + diphosphate + H+
        XTP + H2O  ->  xanthosine-5-phosphate + diphosphate + H+

- G7529 (yggU) (b2953)
   Products of gene:
     - G7529-MONOMER (conserved protein)

- G7528 (yggT) (b2952)
   Products of gene:
     - G7528-MONOMER (predicted inner membrane protein)

- G7527 (yggS) (b2951)
   Products of gene:
     - G7527-MONOMER (predicted enzyme)

- G7526 (yggR) (b2950)
   Products of gene:
     - G7526-MONOMER (predicted transporter)

- G7524 (yqgE) (b2948)
   Products of gene:
     - G7524-MONOMER (predicted protein)

- EG11779 (trmI) (b2960)
   Products of gene:
     - EG11779-MONOMER (tRNA (m7G46) methyltransferase)
       Reactions:
        all-tRNAs + S-adenosyl-L-methionine  =  a tRNA containing N7-methylguanine + S-adenosyl-L-homocysteine



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ORGANISMS CONTAINING AT LEAST 6 GENES FROM THE GROUP:

Total number of orgs: 145
Effective number of orgs (counting one per cluster within 468 clusters): 102

Organism list
Homologs in each organism in the list
Features enriched in organism list


Follow (ncbi) link, when present, to find the set of organism features for each organism
Org ID  Org Name  # genes in group found in org  
YPSE349747 ncbi Yersinia pseudotuberculosis IP 317587
YPSE273123 ncbi Yersinia pseudotuberculosis IP 329537
YPES386656 ncbi Yersinia pestis Pestoides F7
YPES377628 ncbi Yersinia pestis Nepal5167
YPES360102 ncbi Yersinia pestis Antiqua7
YPES349746 ncbi Yersinia pestis Angola7
YPES214092 ncbi Yersinia pestis CO927
YPES187410 ncbi Yersinia pestis KIM 107
YENT393305 ncbi Yersinia enterocolitica enterocolitica 80817
VVUL216895 ncbi Vibrio vulnificus CMCP67
VVUL196600 ncbi Vibrio vulnificus YJ0167
VPAR223926 ncbi Vibrio parahaemolyticus RIMD 22106337
VFIS312309 ncbi Vibrio fischeri ES1146
VEIS391735 ncbi Verminephrobacter eiseniae EF01-26
VCHO345073 ncbi Vibrio cholerae O3957
VCHO ncbi Vibrio cholerae O1 biovar El Tor str. N169617
TTUR377629 ncbi Teredinibacter turnerae T79017
TELO197221 ncbi Thermosynechococcus elongatus BP-16
TDEN292415 ncbi Thiobacillus denitrificans ATCC 252597
TCRU317025 ncbi Thiomicrospira crunogena XCL-26
STYP99287 ncbi Salmonella enterica enterica serovar Typhimurium str. LT27
SSP94122 ncbi Shewanella sp. ANA-37
SSON300269 ncbi Shigella sonnei Ss0467
SSED425104 ncbi Shewanella sediminis HAW-EB37
SPRO399741 ncbi Serratia proteamaculans 5687
SPEA398579 ncbi Shewanella pealeana ATCC 7003457
SONE211586 ncbi Shewanella oneidensis MR-17
SLOI323850 ncbi Shewanella loihica PV-47
SHIGELLA ncbi Shigella flexneri 2a str. 2457T7
SHAL458817 ncbi Shewanella halifaxensis HAW-EB47
SGLO343509 ncbi Sodalis glossinidius morsitans6
SFLE373384 ncbi Shigella flexneri 5 str. 84017
SFLE198214 ncbi Shigella flexneri 2a str. 3017
SENT454169 ncbi Salmonella enterica enterica serovar Heidelberg str. SL4767
SENT321314 ncbi Salmonella enterica enterica serovar Choleraesuis str. SC-B677
SENT295319 ncbi Salmonella enterica enterica serovar Paratyphi A str. ATCC 91507
SENT220341 ncbi Salmonella enterica enterica serovar Typhi str. CT187
SENT209261 ncbi Salmonella enterica enterica serovar Typhi str. Ty27
SDYS300267 ncbi Shigella dysenteriae Sd1977
SDEN318161 ncbi Shewanella denitrificans OS2176
SDEG203122 ncbi Saccharophagus degradans 2-406
SBOY300268 ncbi Shigella boydii Sb2277
SBAL402882 ncbi Shewanella baltica OS1857
SBAL399599 ncbi Shewanella baltica OS1957
RSOL267608 ncbi Ralstonia solanacearum GMI10006
RRUB269796 ncbi Rhodospirillum rubrum ATCC 111706
RMET266264 ncbi Ralstonia metallidurans CH346
RFER338969 ncbi Rhodoferax ferrireducens T1187
REUT381666 ncbi Ralstonia eutropha H166
REUT264198 ncbi Ralstonia eutropha JMP1346
PSYR223283 ncbi Pseudomonas syringae pv. tomato str. DC30006
PSYR205918 ncbi Pseudomonas syringae pv. syringae B728a6
PSTU379731 ncbi Pseudomonas stutzeri A15016
PSP56811 Psychrobacter sp.6
PSP296591 ncbi Polaromonas sp. JS6667
PPUT76869 ncbi Pseudomonas putida GB-16
PPUT351746 ncbi Pseudomonas putida F16
PPUT160488 ncbi Pseudomonas putida KT24406
PPRO298386 ncbi Photobacterium profundum SS97
PNAP365044 ncbi Polaromonas naphthalenivorans CJ27
PMUL272843 ncbi Pasteurella multocida multocida Pm706
PMEN399739 ncbi Pseudomonas mendocina ymp7
PLUM243265 ncbi Photorhabdus luminescens laumondii TTO16
PING357804 ncbi Psychromonas ingrahamii 377
PHAL326442 ncbi Pseudoalteromonas haloplanktis TAC1256
PFLU220664 ncbi Pseudomonas fluorescens Pf-57
PFLU216595 ncbi Pseudomonas fluorescens SBW256
PFLU205922 ncbi Pseudomonas fluorescens Pf0-17
PENT384676 ncbi Pseudomonas entomophila L486
PCRY335284 ncbi Psychrobacter cryohalolentis K56
PCAR338963 ncbi Pelobacter carbinolicus DSM 23806
PATL342610 ncbi Pseudoalteromonas atlantica T6c7
PARC259536 ncbi Psychrobacter arcticus 273-46
PAER208964 ncbi Pseudomonas aeruginosa PAO16
PAER208963 ncbi Pseudomonas aeruginosa UCBPP-PA147
NSP103690 ncbi Nostoc sp. PCC 71206
NOCE323261 ncbi Nitrosococcus oceani ATCC 197077
NMUL323848 ncbi Nitrosospira multiformis ATCC 251966
NEUT335283 ncbi Nitrosomonas eutropha C917
NEUR228410 ncbi Nitrosomonas europaea ATCC 197187
MSUC221988 ncbi Mannheimia succiniciproducens MBEL55E6
MFLA265072 ncbi Methylobacillus flagellatus KT6
MCAP243233 ncbi Methylococcus capsulatus Bath6
MAQU351348 ncbi Marinobacter aquaeolei VT86
LPNE400673 ncbi Legionella pneumophila Corby6
LPNE297246 ncbi Legionella pneumophila Paris7
LPNE297245 ncbi Legionella pneumophila Lens7
LPNE272624 ncbi Legionella pneumophila pneumophila Philadelphia 17
LCHO395495 ncbi Leptothrix cholodnii SP-66
KPNE272620 ncbi Klebsiella pneumoniae pneumoniae MGH 785787
JSP375286 ncbi Janthinobacterium sp. Marseille6
ILOI283942 ncbi Idiomarina loihiensis L2TR6
HSOM228400 ncbi Haemophilus somnus 23366
HSOM205914 ncbi Haemophilus somnus 129PT6
HHAL349124 ncbi Halorhodospira halophila SL17
HDUC233412 ncbi Haemophilus ducreyi 35000HP6
HCHE349521 ncbi Hahella chejuensis KCTC 23967
HARS204773 ncbi Herminiimonas arsenicoxydans6
GURA351605 ncbi Geobacter uraniireducens Rf46
GSUL243231 ncbi Geobacter sulfurreducens PCA6
GMET269799 ncbi Geobacter metallireducens GS-156
ESP42895 Enterobacter sp.7
EFER585054 ncbi Escherichia fergusonii ATCC 354697
ECOO157 ncbi Escherichia coli O157:H7 EDL9337
ECOL83334 Escherichia coli O157:H77
ECOL585397 ncbi Escherichia coli ED1a7
ECOL585057 ncbi Escherichia coli IAI397
ECOL585056 ncbi Escherichia coli UMN0267
ECOL585055 ncbi Escherichia coli 559897
ECOL585035 ncbi Escherichia coli S887
ECOL585034 ncbi Escherichia coli IAI17
ECOL481805 ncbi Escherichia coli ATCC 87397
ECOL469008 ncbi Escherichia coli BL21(DE3)7
ECOL439855 ncbi Escherichia coli SMS-3-57
ECOL413997 ncbi Escherichia coli B str. REL6067
ECOL409438 ncbi Escherichia coli SE117
ECOL405955 ncbi Escherichia coli APEC O17
ECOL364106 ncbi Escherichia coli UTI897
ECOL362663 ncbi Escherichia coli 5367
ECOL331111 ncbi Escherichia coli E24377A7
ECOL316407 ncbi Escherichia coli K-12 substr. W31107
ECOL199310 ncbi Escherichia coli CFT0737
ECAR218491 ncbi Pectobacterium atrosepticum SCRI10437
DPSY177439 ncbi Desulfotalea psychrophila LSv546
DOLE96561 ncbi Desulfococcus oleovorans Hxd36
DARO159087 ncbi Dechloromonas aromatica RCB7
CVIO243365 ncbi Chromobacterium violaceum ATCC 124726
CSAL290398 ncbi Chromohalobacter salexigens DSM 30436
CPSY167879 ncbi Colwellia psychrerythraea 34H6
CJAP155077 Cellvibrio japonicus7
BBRO257310 ncbi Bordetella bronchiseptica RB506
AVAR240292 ncbi Anabaena variabilis ATCC 294136
ASP76114 ncbi Aromatoleum aromaticum EbN17
ASP62977 ncbi Acinetobacter sp. ADP16
ASP62928 ncbi Azoarcus sp. BH727
ASP232721 ncbi Acidovorax sp. JS426
ASAL382245 ncbi Aeromonas salmonicida salmonicida A4497
APLE434271 ncbi Actinobacillus pleuropneumoniae serovar 3 str. JL036
APLE416269 ncbi Actinobacillus pleuropneumoniae L206
AHYD196024 Aeromonas hydrophila dhakensis7
AFER243159 ncbi Acidithiobacillus ferrooxidans ATCC 232707
AEHR187272 ncbi Alkalilimnicola ehrlichii MLHE-16
ADEH290397 ncbi Anaeromyxobacter dehalogenans 2CP-C6
ABOR393595 ncbi Alcanivorax borkumensis SK26
AAVE397945 ncbi Acidovorax citrulli AAC00-16


Names of the homologs of the genes in the group in each of these orgs
  G7530   G7529   G7528   G7527   G7526   G7524   EG11779   
YPSE349747 YPSIP31758_0826YPSIP31758_0827YPSIP31758_0828YPSIP31758_0830YPSIP31758_0831YPSIP31758_0835YPSIP31758_0820
YPSE273123 YPTB3217YPTB3216YPTB3215YPTB3213YPTB3212YPTB3208YPTB3223
YPES386656 YPDSF_0570YPDSF_0571YPDSF_0572YPDSF_0574YPDSF_0575YPDSF_0579YPDSF_0563
YPES377628 YPN_3142YPN_3141YPN_3140YPN_3138YPN_3137YPN_3133YPN_3149
YPES360102 YPA_0320YPA_0321YPA_0322YPA_0324YPA_0325YPA_0329YPA_0313
YPES349746 YPANGOLA_A0142YPANGOLA_A0141YPANGOLA_A0140YPANGOLA_A0138YPANGOLA_A3337YPANGOLA_A3341YPANGOLA_A0149
YPES214092 YPO0945YPO0944YPO0943YPO0941YPO0940YPO0936YPO0951
YPES187410 Y3331Y3330Y3329Y3327Y3326Y3322Y3338
YENT393305 YE3437YE3436YE3435YE3433YE3432YE3428YE3442
VVUL216895 VV1_1520VV1_1522VV1_1523VV1_1525VV1_1526VV1_1529VV1_1516
VVUL196600 VV2879VV2877VV2876VV2873VV2874VV2869VV2883
VPAR223926 VP2621VP2619VP2618VP2616VP2615VP2612VP2625
VFIS312309 VF0425VF0427VF0428VF0430VF0431VF0434
VEIS391735 VEIS_4156VEIS_4865VEIS_1687VEIS_1688VEIS_1517VEIS_1672
VCHO345073 VC0395_A0008VC0395_A0010VC0395_A0011VC0395_A0013VC0395_A0014VC0395_A0019VC0395_A0005
VCHO VC0456VC0458VC0459VC0461VC0462VC0467VC0453
TTUR377629 TERTU_0216TERTU_0220TERTU_0221TERTU_0223TERTU_0225TERTU_0228TERTU_0253
TELO197221 TLL1797TSR1994TSR0534TLL1037TLL0121TLL1983
TDEN292415 TBD_0478TBD_2620TBD_2416TBD_0668TBD_2419TBD_2579TBD_2125
TCRU317025 TCR_2054TCR_1838TCR_1834TCR_1750TCR_1827TCR_0119
STYP99287 STM3103STM3102STM3101STM3100STM3099STM3096STM3109
SSP94122 SHEWANA3_1189SHEWANA3_1191SHEWANA3_1192SHEWANA3_1194SHEWANA3_1195SHEWANA3_1200SHEWANA3_1182
SSON300269 SSO_3108SSO_3107SSO_3106SSO_3104SSO_3105SSO_3102SSO_3236
SSED425104 SSED_1227SSED_1229SSED_1230SSED_1232SSED_1233SSED_1237SSED_1220
SPRO399741 SPRO_4034SPRO_4033SPRO_4032SPRO_4030SPRO_4029SPRO_4027SPRO_4042
SPEA398579 SPEA_1122SPEA_1124SPEA_1125SPEA_1127SPEA_1128SPEA_1132SPEA_1109
SONE211586 SO_3358SO_3356SO_3355SO_3352SO_3351SO_3346SO_3367
SLOI323850 SHEW_1132SHEW_1134SHEW_1135SHEW_1137SHEW_1138SHEW_1144SHEW_1124
SHIGELLA YGGVYGGUYGGTYGGSYGGRYQGEYGGH
SHAL458817 SHAL_1167SHAL_1169SHAL_1170SHAL_1172SHAL_1173SHAL_1177SHAL_1155
SGLO343509 SG2031SG2030SG2029SG2027SG2023SG2034
SFLE373384 SFV_3008SFV_3007SFV_3006SFV_3005SFV_3004SFV_3002SFV_3018
SFLE198214 AAN44426.1AAN44425.1AAN44424.1AAN44423.1AAN44422.1AAN44420.1AAN44438.1
SENT454169 SEHA_C3342SEHA_C3341SEHA_C3340SEHA_C3339SEHA_C3338SEHA_C3335SEHA_C3349
SENT321314 SCH_3043SCH_3042SCH_3041SCH_3040SCH_3039SCH_3036SCH_3050
SENT295319 SPA2966SPA2965SPA2964SPA2963SPA2962SPA2959SPA2972
SENT220341 STY3256STY3255STY3254STY3253STY3252STY3249STY3264
SENT209261 T3015T3014T3013T3012T3011T3008T3022
SDYS300267 SDY_3118SDY_3119SDY_3120SDY_3122SDY_3121SDY_3124SDY_3112
SDEN318161 SDEN_2686SDEN_2684SDEN_2682SDEN_2681SDEN_2674SDEN_2697
SDEG203122 SDE_3647SDE_3643SDE_3641SDE_3640SDE_3637SDE_3592
SBOY300268 SBO_3036SBO_3037SBO_3038SBO_3040SBO_3039SBO_3042SBO_3030
SBAL402882 SHEW185_3045SHEW185_3043SHEW185_3042SHEW185_3040SHEW185_3039SHEW185_3034SHEW185_3052
SBAL399599 SBAL195_3188SBAL195_3186SBAL195_3185SBAL195_3183SBAL195_3182SBAL195_3177SBAL195_3195
RSOL267608 RSC2160RSP1385RSC2683RSC2682RSC0675RSC0703
RRUB269796 RRU_A3640RRU_A3526RRU_A1141RRU_A0118RRU_A3059RRU_A3777
RMET266264 RMET_0851RMET_3642RMET_2937RMET_2936RMET_2743RMET_2704
RFER338969 RFER_1630RFER_0749RFER_1785RFER_3879RFER_3878RFER_1377RFER_1896
REUT381666 H16_A0948H16_B0171H16_A3105H16_A3104H16_A2916H16_A2870
REUT264198 REUT_A2478REUT_B5573REUT_A2801REUT_A2800REUT_A0705REUT_A0758
PSYR223283 PSPTO_5051PSPTO_5048PSPTO_5046PSPTO_5045PSPTO_5037PSPTO_0435
PSYR205918 PSYR_0472PSYR_0475PSYR_0477PSYR_0478PSYR_0485PSYR_4739
PSTU379731 PST_3973PST_3968PST_3966PST_3965PST_3956PST_3982
PSP56811 PSYCPRWF_0308PSYCPRWF_0338PSYCPRWF_1883PSYCPRWF_1884PSYCPRWF_0144PSYCPRWF_1763
PSP296591 BPRO_1340BPRO_2664BPRO_2699BPRO_0397BPRO_0396BPRO_1142BPRO_2905
PPUT76869 PPUTGB1_5150PPUTGB1_5146PPUTGB1_5144PPUTGB1_5143PPUTGB1_5045PPUTGB1_5153
PPUT351746 PPUT_4973PPUT_4969PPUT_4967PPUT_4966PPUT_4869PPUT_4976
PPUT160488 PP_5100PP_5096PP_5094PP_5093PP_4995PP_5103
PPRO298386 PBPRA3148PBPRA3146PBPRA3145PBPRA3143PBPRA3142PBPRA3139PBPRA3152
PNAP365044 PNAP_0815PNAP_0379PNAP_2437PNAP_0280PNAP_0278PNAP_3348PNAP_2936
PMUL272843 PM1666PM1313PM1314PM0112PM1869PM1317
PMEN399739 PMEN_4158PMEN_4153PMEN_4152PMEN_4150PMEN_4149PMEN_0400PMEN_4166
PLUM243265 PLU1177PLU1178PLU1180PLU1181PLU1183PLU1170
PING357804 PING_3045PING_3043PING_3042PING_3040PING_3039PING_1286PING_0377
PHAL326442 PSHAA2608PSHAA2606PSHAA2604PSHAA2603PSHAA2600PSHAA0553
PFLU220664 PFL_5845PFL_5841PFL_5840PFL_5838PFL_5837PFL_5830PFL_5849
PFLU216595 PFLU5769PFLU5765PFLU5763PFLU5762PFLU5755PFLU5772
PFLU205922 PFL_5326PFL_5322PFL_5321PFL_5319PFL_5318PFL_5311PFL_5329
PENT384676 PSEEN0312PSEEN0316PSEEN0318PSEEN0319PSEEN5058PSEEN0308
PCRY335284 PCRYO_2232PCRYO_0178PCRYO_0294PCRYO_0293PCRYO_0062PCRYO_2013
PCAR338963 PCAR_2029PCAR_0617PCAR_0615PCAR_0403PCAR_0871PCAR_0761
PATL342610 PATL_3287PATL_0407PATL_3720PATL_3718PATL_3717PATL_1153PATL_0078
PARC259536 PSYC_1939PSYC_0166PSYC_0268PSYC_0267PSYC_0057PSYC_1731
PAER208964 PA0387PA0392PA0394PA0395PA0405PA0382
PAER208963 PA14_05050PA14_05120PA14_05130PA14_05160PA14_05180PA14_05290PA14_05000
NSP103690 ALL5088ASL3196ASL2061ALR0486ALL2443ALR1845
NOCE323261 NOC_2443NOC_3000NOC_3001NOC_3003NOC_3004NOC_0368NOC_1026
NMUL323848 NMUL_A0067NMUL_A0579NMUL_A0580NMUL_A2732NMUL_A2478NMUL_A0069
NEUT335283 NEUT_0309NEUT_2146NEUT_2147NEUT_2339NEUT_2338NEUT_0448NEUT_0322
NEUR228410 NE0277NE0395NE0394NE0966NE0965NE1668NE0283
MSUC221988 MS1747MS0322MS0321MS1705MS0260MS0318
MFLA265072 MFLA_0042MFLA_2110MFLA_2108MFLA_2107MFLA_2099MFLA_0231
MCAP243233 MCA_3023MCA_1534MCA_1536MCA_1537MCA_2336MCA_1532
MAQU351348 MAQU_0529MAQU_0534MAQU_0536MAQU_0537MAQU_3764MAQU_0526
LPNE400673 LPC_1994LPC_1500LPC_1498LPC_1497LPC_2717LPC_2863
LPNE297246 LPP2548PLPP0102LPP1998LPP1996LPP1995LPP0636LPP0545
LPNE297245 LPL2404LPL2644LPL1993LPL1991LPL1990LPL0620LPL0521
LPNE272624 LPG2484LPG2716LPG2016LPG2014LPG2013LPG0586LPG0481
LCHO395495 LCHO_0704LCHO_0384LCHO_1630LCHO_1631LCHO_3962LCHO_1911
KPNE272620 GKPORF_B2733GKPORF_B2732GKPORF_B2731GKPORF_B2730GKPORF_B2729GKPORF_B2726GKPORF_B2737
JSP375286 MMA_1333MMA_2976MMA_0341MMA_0340MMA_2950MMA_2928
ILOI283942 IL1979IL1976IL1974IL1973IL2218IL1981
HSOM228400 HSM_2010HSM_1819HSM_1820HSM_0348HSM_1900HSM_1828
HSOM205914 HS_0125HS_1657HS_1658HS_1215HS_0009HS_1666
HHAL349124 HHAL_0972HHAL_0948HHAL_0947HHAL_0945HHAL_0316HHAL_0938HHAL_2398
HDUC233412 HD_1348HD_0778HD_0777HD_0298HD_1794HD_0775
HCHE349521 HCH_06362HCH_06357HCH_06356HCH_06353HCH_06352HCH_00550HCH_06365
HARS204773 HEAR2125HEAR2767HEAR0290HEAR0289HEAR2740HEAR2695
GURA351605 GURA_2255GURA_1167GURA_1165GURA_3685GURA_4274GURA_0955
GSUL243231 GSU_1794GSU_0864GSU_0866GSU_2544GSU_0436GSU_0521
GMET269799 GMET_1875GMET_1164GMET_1166GMET_0896GMET_3400GMET_3034
ESP42895 ENT638_3360ENT638_3359ENT638_3358ENT638_3357ENT638_3356ENT638_3352ENT638_3365
EFER585054 EFER_2893EFER_2892EFER_2891EFER_2890EFER_2889EFER_2887EFER_2902
ECOO157 YGGVYGGUYGGTYGGSYGGRYQGEYGGH
ECOL83334 ECS3830ECS3829ECS3828ECS3826ECS3827ECS3824ECS3836
ECOL585397 ECED1_3417ECED1_3416ECED1_3415ECED1_3414ECED1_3413ECED1_3411ECED1_3423
ECOL585057 ECIAI39_3372ECIAI39_3371ECIAI39_3370ECIAI39_3369ECIAI39_3368ECIAI39_3366ECIAI39_3384
ECOL585056 ECUMN_3306ECUMN_3305ECUMN_3304ECUMN_3303ECUMN_3302ECUMN_3300ECUMN_3315
ECOL585055 EC55989_3247EC55989_3246EC55989_3245EC55989_3244EC55989_3243EC55989_3241EC55989_3253
ECOL585035 ECS88_3236ECS88_3235ECS88_3234ECS88_3233ECS88_3232ECS88_3230ECS88_3242
ECOL585034 ECIAI1_3087ECIAI1_3086ECIAI1_3085ECIAI1_3084ECIAI1_3083ECIAI1_3081ECIAI1_3093
ECOL481805 ECOLC_0760ECOLC_0761ECOLC_0762ECOLC_0763ECOLC_0764ECOLC_0766ECOLC_0754
ECOL469008 ECBD_0786ECBD_0787ECBD_0788ECBD_0789ECBD_0790ECBD_0792ECBD_0779
ECOL439855 ECSMS35_3096ECSMS35_3095ECSMS35_3094ECSMS35_3093ECSMS35_3092ECSMS35_3090ECSMS35_3103
ECOL413997 ECB_02784ECB_02783ECB_02782ECB_02781ECB_02780ECB_02778ECB_02790
ECOL409438 ECSE_3222ECSE_3221ECSE_3220ECSE_3219ECSE_3218ECSE_3216ECSE_3229
ECOL405955 APECO1_3567APECO1_3568APECO1_3569APECO1_3570APECO1_3571APECO1_3573APECO1_3561
ECOL364106 UTI89_C3343UTI89_C3342UTI89_C3341UTI89_C3340UTI89_C3339UTI89_C3337UTI89_C3350
ECOL362663 ECP_2948ECP_2947ECP_2946ECP_2945ECP_2944ECP_2942ECP_2954
ECOL331111 ECE24377A_3298ECE24377A_3297ECE24377A_3296ECE24377A_3295ECE24377A_3294ECE24377A_3291ECE24377A_3305
ECOL316407 ECK2949:JW2921:B2954ECK2948:JW5479:B2953ECK2947:JW2919:B2952ECK2946:JW2918:B2951ECK2945:JW2917:B2950ECK2943:JW2915:B2948ECK2955:JW2927:B2960
ECOL199310 C3540C3539C3538C3537C3536C3534C3547
ECAR218491 ECA3631ECA3630ECA3629ECA3627ECA3626ECA3925ECA0977
DPSY177439 DP0707DP0789DP0787DP2780DP1694DP2218
DOLE96561 DOLE_0374DOLE_0289DOLE_3054DOLE_1179DOLE_3053DOLE_1574
DARO159087 DARO_3852DARO_3887DARO_3886DARO_3884DARO_3883DARO_3893DARO_3860
CVIO243365 CV_0926CV_0176CV_0178CV_0179CV_3909CV_3786
CSAL290398 CSAL_3307CSAL_3056CSAL_3054CSAL_3053CSAL_0058CSAL_3145
CPSY167879 CPS_3667CPS_3665CPS_3663CPS_3662CPS_1252CPS_4146
CJAP155077 CJA_0122CJA_0091CJA_0090CJA_0088CJA_0087CJA_0083CJA_3495
BBRO257310 BB2956BB4379BB2871BB0791BB4405BB0510
AVAR240292 AVA_2368AVA_3894AVA_3109AVA_2899AVA_0375AVA_4784
ASP76114 C1A234EBA1762EBA1764EBA1768EBA1770EBA1753C1A43
ASP62977 ACIAD0526ACIAD3031ACIAD0913ACIAD0912ACIAD0353ACIAD1302
ASP62928 AZO3964AZO3464AZO3465AZO3467AZO3468AZO3459AZO3968
ASP232721 AJS_0922AJS_3242AJS_0421AJS_0420AJS_3573AJS_1981
ASAL382245 ASA_3446ASA_3628ASA_3629ASA_3631ASA_3632ASA_1195ASA_0835
APLE434271 APJL_0491APJL_1398APJL_1399APJL_0052APJL_0237APJL_1401
APLE416269 APL_0464APL_1380APL_1381APL_0052APL_0232APL_1383
AHYD196024 AHA_0846AHA_3661AHA_3662AHA_3664AHA_3665AHA_3130AHA_3482
AFER243159 AFE_0759AFE_2768AFE_2767AFE_2765AFE_2764AFE_0048AFE_2757
AEHR187272 MLG_2447MLG_0339MLG_0341MLG_0342MLG_0349MLG_0033
ADEH290397 ADEH_3360ADEH_1087ADEH_2503ADEH_0623ADEH_3962ADEH_3785
ABOR393595 ABO_2578ABO_2667ABO_2669ABO_2670ABO_0112ABO_2573
AAVE397945 AAVE_3578AAVE_1212AAVE_0638AAVE_0637AAVE_0907AAVE_3033


Organism features enriched in list (features available for 140 out of the 145 orgs in the list)
Feature    Pvalue       Num occurrences in list  Total num occurrences  
Arrangment:Chains 0.0001204992
Arrangment:Pairs 0.008461436112
Disease:Bubonic_plague 0.000176566
Disease:Dysentery 0.000176566
Disease:Gastroenteritis 0.00006541013
Disease:Legionnaire's_disease 0.003217744
Endospores:No 0.000022131211
Endospores:Yes 4.058e-6153
GC_Content_Range4:0-40 1.722e-209213
GC_Content_Range4:40-60 2.105e-1898224
GC_Content_Range7:30-40 3.203e-139166
GC_Content_Range7:40-50 0.000447942117
GC_Content_Range7:50-60 7.994e-1356107
Genome_Size_Range5:0-2 6.713e-211155
Genome_Size_Range5:2-4 0.001839234197
Genome_Size_Range5:4-6 9.282e-2089184
Genome_Size_Range9:1-2 1.490e-161128
Genome_Size_Range9:2-3 0.000628616120
Genome_Size_Range9:4-5 1.077e-84696
Genome_Size_Range9:5-6 1.845e-84388
Genome_Size_Range9:6-8 0.00535711638
Gram_Stain:Gram_Neg 7.432e-23127333
Habitat:Host-associated 0.005269038206
Habitat:Multiple 0.000288159178
Motility:No 2.071e-1010151
Motility:Yes 3.666e-13101267
Oxygen_Req:Anaerobic 0.00001389102
Oxygen_Req:Facultative 3.991e-1181201
Shape:Coccus 8.105e-7482
Shape:Rod 1.425e-11116347
Temp._range:Psychrophilic 2.173e-699
Temp._range:Thermophilic 0.0032966235



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ORGANISMS CONTAINING AT MOST 1 GENES FROM THE GROUP:

Total number of orgs: 140
Effective number of orgs (counting one per cluster within 468 clusters): 116

Organism list
Homologs in each organism in the list
Features enriched in organism list


Follow (ncbi) link, when present, to find the set of organism features for each organism
Org ID  Org Name  # genes in group found in org  
WPIP955 Wolbachia pipientis1
WPIP80849 Wolbachia endosymbiont of Brugia malayi0
UURE95667 Ureaplasma urealyticum serovar 130
UURE95664 Ureaplasma urealyticum serovar 100
UPAR505682 ncbi Ureaplasma parvum serovar 3 str. ATCC 278150
UMET351160 ncbi uncultured methanogenic archaeon RC-I0
TWHI218496 ncbi Tropheryma whipplei TW08/270
TWHI203267 ncbi Tropheryma whipplei Twist0
TVOL273116 ncbi Thermoplasma volcanium GSS10
TPEN368408 ncbi Thermofilum pendens Hrk 50
TPAL243276 ncbi Treponema pallidum pallidum Nichols1
TKOD69014 ncbi Thermococcus kodakarensis KOD11
TACI273075 ncbi Thermoplasma acidophilum DSM 17280
STOK273063 ncbi Sulfolobus tokodaii 70
SSUI391296 ncbi Streptococcus suis 98HAH331
SSUI391295 ncbi Streptococcus suis 05ZYH331
SSOL273057 ncbi Sulfolobus solfataricus P20
SPYO370554 ncbi Streptococcus pyogenes MGAS107501
SPYO370553 ncbi Streptococcus pyogenes MGAS20961
SPYO370552 ncbi Streptococcus pyogenes MGAS102701
SPYO370551 ncbi Streptococcus pyogenes MGAS94291
SPYO319701 ncbi Streptococcus pyogenes MGAS61801
SPYO293653 ncbi Streptococcus pyogenes MGAS50051
SPYO286636 ncbi Streptococcus pyogenes MGAS103941
SPYO198466 ncbi Streptococcus pyogenes MGAS3151
SPYO193567 ncbi Streptococcus pyogenes SSI-11
SPYO186103 ncbi Streptococcus pyogenes MGAS82321
SPYO160490 ncbi Streptococcus pyogenes M1 GAS1
SMAR399550 ncbi Staphylothermus marinus F11
SGOR29390 Streptococcus gordonii Challis1
SACI330779 ncbi Sulfolobus acidocaldarius DSM 6390
RCAN293613 ncbi Rickettsia canadensis McKiel1
PTOR263820 ncbi Picrophilus torridus DSM 97900
PRUM264731 ncbi Prevotella ruminicola 230
PMAR93060 ncbi Prochlorococcus marinus MIT 92150
PMAR74546 ncbi Prochlorococcus marinus MIT 93121
PMAR59920 ncbi Prochlorococcus marinus NATL2A1
PMAR167555 ncbi Prochlorococcus marinus NATL1A1
PMAR167546 ncbi Prochlorococcus marinus MIT 93011
PMAR167542 ncbi Prochlorococcus marinus MIT 95150
PMAR167540 Prochlorococcus marinus pastoris MED4ax0
PMAR146891 ncbi Prochlorococcus marinus AS96010
PISL384616 ncbi Pyrobaculum islandicum DSM 41840
PINT246198 Prevotella intermedia 171
PHOR70601 ncbi Pyrococcus horikoshii OT30
PGIN242619 ncbi Porphyromonas gingivalis W831
PFUR186497 ncbi Pyrococcus furiosus DSM 36381
PAST100379 Onion yellows phytoplasma0
PARS340102 ncbi Pyrobaculum arsenaticum DSM 135140
PAER178306 ncbi Pyrobaculum aerophilum IM20
PABY272844 ncbi Pyrococcus abyssi GE51
OTSU357244 ncbi Orientia tsutsugamushi Boryong0
NSEN222891 ncbi Neorickettsia sennetsu Miyayama1
NPHA348780 ncbi Natronomonas pharaonis DSM 21600
MTHE349307 ncbi Methanosaeta thermophila PT0
MTHE187420 ncbi Methanothermobacter thermautotrophicus Delta H0
MSYN262723 ncbi Mycoplasma synoviae 530
MSTA339860 ncbi Methanosphaera stadtmanae DSM 30910
MSED399549 ncbi Metallosphaera sedula DSM 53480
MPUL272635 ncbi Mycoplasma pulmonis UAB CTIP0
MPNE272634 ncbi Mycoplasma pneumoniae M1290
MPEN272633 ncbi Mycoplasma penetrans HF-20
MMYC272632 ncbi Mycoplasma mycoides mycoides SC str. PG10
MMOB267748 ncbi Mycoplasma mobile 163K1
MMAZ192952 ncbi Methanosarcina mazei Go11
MMAR444158 ncbi Methanococcus maripaludis C60
MMAR426368 ncbi Methanococcus maripaludis C70
MMAR402880 ncbi Methanococcus maripaludis C50
MMAR368407 ncbi Methanoculleus marisnigri JR10
MMAR267377 ncbi Methanococcus maripaludis S20
MLAB410358 ncbi Methanocorpusculum labreanum Z0
MKAN190192 ncbi Methanopyrus kandleri AV190
MJAN243232 ncbi Methanocaldococcus jannaschii DSM 26610
MHYO295358 ncbi Mycoplasma hyopneumoniae 2320
MHYO262722 ncbi Mycoplasma hyopneumoniae 74481
MHYO262719 ncbi Mycoplasma hyopneumoniae J1
MHUN323259 ncbi Methanospirillum hungatei JF-10
MGEN243273 ncbi Mycoplasma genitalium G370
MFLO265311 ncbi Mesoplasma florum L10
MCAP340047 ncbi Mycoplasma capricolum capricolum ATCC 273430
MBUR259564 ncbi Methanococcoides burtonii DSM 62420
MBAR269797 ncbi Methanosarcina barkeri Fusaro0
MART243272 ncbi Mycoplasma arthritidis 158L3-10
MAEO419665 ncbi Methanococcus aeolicus Nankai-30
MACE188937 ncbi Methanosarcina acetivorans C2A0
LSAK314315 ncbi Lactobacillus sakei sakei 23K1
LPLA220668 ncbi Lactobacillus plantarum WCFS11
LMES203120 ncbi Leuconostoc mesenteroides mesenteroides ATCC 82931
LCAS321967 ncbi Lactobacillus casei ATCC 3341
LBRE387344 ncbi Lactobacillus brevis ATCC 3671
LBIF456481 ncbi Leptospira biflexa serovar Patoc strain Patoc 1 (Paris)1
LBIF355278 ncbi Leptospira biflexa serovar Patoc strain Patoc 1 (Ames)1
IHOS453591 ncbi Ignicoccus hospitalis KIN4/I0
HWAL362976 ncbi Haloquadratum walsbyi DSM 167900
HSP64091 ncbi Halobacterium sp. NRC-10
HSAL478009 ncbi Halobacterium salinarum R10
HPYL85963 ncbi Helicobacter pylori J991
HPYL357544 ncbi Helicobacter pylori HPAG11
HPY ncbi Helicobacter pylori 266951
HMUK485914 ncbi Halomicrobium mukohataei DSM 122860
HMAR272569 ncbi Haloarcula marismortui ATCC 430490
HBUT415426 ncbi Hyperthermus butylicus DSM 54560
HACI382638 ncbi Helicobacter acinonychis Sheeba1
FMAG334413 ncbi Finegoldia magna ATCC 293281
ERUM302409 ncbi Ehrlichia ruminantium Gardel0
ERUM254945 ncbi Ehrlichia ruminantium Welgevonden0
EFAE226185 ncbi Enterococcus faecalis V5831
ECHA205920 ncbi Ehrlichia chaffeensis Arkansas0
ECAN269484 ncbi Ehrlichia canis Jake0
CTRA471473 ncbi Chlamydia trachomatis L2b/UCH-1/proctitis1
CTRA471472 ncbi Chlamydia trachomatis 434/Bu1
CSUL444179 ncbi Candidatus Sulcia muelleri GWSS0
CMUR243161 ncbi Chlamydia muridarum Nigg1
CMIC31964 ncbi Clavibacter michiganensis sepedonicus1
CMET456442 ncbi Candidatus Methanoregula boonei 6A80
CMAQ397948 ncbi Caldivirga maquilingensis IC-1670
CKOR374847 ncbi Candidatus Korarchaeum cryptofilum OPF81
CJEJ407148 ncbi Campylobacter jejuni jejuni 811161
CJEJ360109 ncbi Campylobacter jejuni doylei 269.971
CJEJ354242 ncbi Campylobacter jejuni jejuni 81-1761
CJEJ195099 ncbi Campylobacter jejuni RM12211
CJEJ192222 ncbi Campylobacter jejuni jejuni NCTC 111681
CFET360106 ncbi Campylobacter fetus fetus 82-401
CBLO291272 ncbi Candidatus Blochmannia pennsylvanicus BPEN1
CBLO203907 ncbi Candidatus Blochmannia floridanus1
BXEN266265 ncbi Burkholderia xenovorans LB4000
BTUR314724 ncbi Borrelia turicatae 91E1350
BHER314723 ncbi Borrelia hermsii DAH0
BGAR290434 ncbi Borrelia garinii PBi0
BCIC186490 Candidatus Baumannia cicadellinicola1
BBUR224326 ncbi Borrelia burgdorferi B310
BAPH372461 ncbi Buchnera aphidicola Cc (Cinara cedri)0
BAFZ390236 ncbi Borrelia afzelii PKo0
AYEL322098 ncbi Aster yellows witches-broom phytoplasma AYWB0
AURANTIMONAS Aurantimonas manganoxydans SI85-9A10
APHA212042 ncbi Anaplasma phagocytophilum HZ0
APER272557 ncbi Aeropyrum pernix K10
AMAR234826 ncbi Anaplasma marginale St. Maries0
ALAI441768 ncbi Acholeplasma laidlawii PG-8A0
AFUL224325 ncbi Archaeoglobus fulgidus DSM 43040


Names of the homologs of the genes in the group in each of these orgs
  G7530   G7529   G7528   G7527   G7526   G7524   EG11779   
WPIP955 WD_1091
WPIP80849
UURE95667
UURE95664
UPAR505682
UMET351160
TWHI218496
TWHI203267
TVOL273116
TPEN368408
TPAL243276 TP_0464
TKOD69014 TK0768
TACI273075
STOK273063
SSUI391296 SSU98_1717
SSUI391295 SSU05_1705
SSOL273057
SPYO370554 MGAS10750_SPY0298
SPYO370553 MGAS2096_SPY0321
SPYO370552 MGAS10270_SPY0299
SPYO370551 MGAS9429_SPY0303
SPYO319701 M28_SPY0293
SPYO293653 M5005_SPY0304
SPYO286636 M6_SPY0330
SPYO198466 SPYM3_0263
SPYO193567 SPS1596
SPYO186103 SPYM18_0412
SPYO160490 SPY0362
SMAR399550 SMAR_0527
SGOR29390 SGO_1675
SACI330779
RCAN293613 A1E_00140
PTOR263820
PRUM264731
PMAR93060
PMAR74546 PMT9312_1188
PMAR59920 PMN2A_1645
PMAR167555 NATL1_03591
PMAR167546 P9301ORF_0706
PMAR167542
PMAR167540
PMAR146891
PISL384616
PINT246198 PIN_A1352
PHOR70601
PGIN242619 PG_2126
PFUR186497 PF1765
PAST100379
PARS340102
PAER178306
PABY272844 PAB7122
OTSU357244
NSEN222891 NSE_0922
NPHA348780
MTHE349307
MTHE187420
MSYN262723
MSTA339860
MSED399549
MPUL272635
MPNE272634
MPEN272633
MMYC272632
MMOB267748 MMOB4960
MMAZ192952 MM1675
MMAR444158
MMAR426368
MMAR402880
MMAR368407
MMAR267377
MLAB410358
MKAN190192
MJAN243232
MHYO295358
MHYO262722 MHP7448_0465
MHYO262719 MHJ_0462
MHUN323259
MGEN243273
MFLO265311
MCAP340047
MBUR259564
MBAR269797
MART243272
MAEO419665
MACE188937
LSAK314315 LSA0406
LPLA220668 LP_2267
LMES203120 LEUM_0610
LCAS321967 LSEI_0799
LBRE387344 LVIS_1213
LBIF456481 LEPBI_I3376
LBIF355278 LBF_3262
IHOS453591
HWAL362976
HSP64091
HSAL478009
HPYL85963 JHP0684
HPYL357544 HPAG1_0732
HPY HP0747
HMUK485914
HMAR272569
HBUT415426
HACI382638 HAC_0671
FMAG334413 FMG_0636
ERUM302409
ERUM254945
EFAE226185 EF_1122
ECHA205920
ECAN269484
CTRA471473 CTLON_0458
CTRA471472 CTL0463
CSUL444179
CMUR243161 TC_0483
CMIC31964 CMS1377
CMET456442
CMAQ397948
CKOR374847 KCR_0466
CJEJ407148 C8J_0791
CJEJ360109 JJD26997_0993
CJEJ354242 CJJ81176_0860
CJEJ195099 CJE_0931
CJEJ192222 CJ0844C
CFET360106 CFF8240_1145
CBLO291272 BPEN_258
CBLO203907 BFL251
BXEN266265
BTUR314724
BHER314723
BGAR290434
BCIC186490 BCI_0481
BBUR224326
BAPH372461
BAFZ390236
AYEL322098
AURANTIMONAS
APHA212042
APER272557
AMAR234826
ALAI441768
AFUL224325


Organism features enriched in list (features available for 130 out of the 140 orgs in the list)
Feature    Pvalue       Num occurrences in list  Total num occurrences  
Arrangment:Pairs 0.000288812112
Arrangment:Singles 0.004134876286
Disease:Wide_range_of_infections 4.823e-81111
Endospores:No 8.557e-1382211
GC_Content_Range4:0-40 3.693e-1078213
GC_Content_Range4:60-100 3.687e-99145
GC_Content_Range7:0-30 2.048e-72647
GC_Content_Range7:30-40 0.000456352166
GC_Content_Range7:50-60 0.000255011107
GC_Content_Range7:60-70 1.129e-88134
Genome_Size_Range5:0-2 4.896e-3693155
Genome_Size_Range5:2-4 0.003418132197
Genome_Size_Range5:4-6 2.562e-194184
Genome_Size_Range5:6-10 0.0000603147
Genome_Size_Range9:0-1 5.962e-142427
Genome_Size_Range9:1-2 7.181e-2069128
Genome_Size_Range9:4-5 1.534e-8396
Genome_Size_Range9:5-6 8.447e-10188
Gram_Stain:Gram_Neg 2.288e-749333
Gram_Stain:Gram_Pos 0.005024823150
Habitat:Host-associated 0.009440756206
Habitat:Multiple 5.012e-620178
Habitat:Specialized 0.00051882253
Habitat:Terrestrial 0.0030111131
Motility:No 0.009938343151
Motility:Yes 0.008704749267
Optimal_temp.:85 0.002384244
Oxygen_Req:Aerobic 0.000065824185
Oxygen_Req:Anaerobic 0.000819335102
Oxygen_Req:Microaerophilic 0.0062027918
Pathogenic_in:Animal 0.0020313666
Pathogenic_in:Swine 0.000518955
Salinity:Extreme_halophilic 0.006689557
Salinity:Non-halophilic 0.000392437106
Shape:Coccus 0.00295432882
Shape:Irregular_coccus 7.503e-91517
Shape:Pleomorphic 0.001935668
Shape:Rod 1.186e-2427347
Shape:Sphere 8.670e-91619
Shape:Spiral 0.00004301834
Temp._range:Hyperthermophilic 9.310e-81723
Temp._range:Mesophilic 0.000181791473



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ORGANISMS ENRICHED FOR GROUP:




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ORGANISMS DEPLETED FOR GROUP:




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PHYLOGENETIC PROFILE SIMILARITY WITH KNOWN PATHWAYS:

Pathways or complexes with absolute value of Pearson coefficient with respect to candidate larger than 0.4 are listed below
The candidate is assumed to exist in orgs listed in section List of organisms containing most genes from the group


Pathway or complex  # Orgs containing it  # of those orgs also containing candidate  Pearson Coeff  
PWY0-1241 (ADP-L-glycero-β-D-manno-heptose biosynthesis)2181280.6153
COBALSYN-PWY (adenosylcobalamin salvage from cobinamide I)1951150.5702
GLYCOCAT-PWY (glycogen degradation I)2461280.5497
AST-PWY (arginine degradation II (AST pathway))120850.5497
ECASYN-PWY (enterobacterial common antigen biosynthesis)1911090.5317
PWY-5111 (CMP-KDO biosynthesis II (from D-arabinose 5-phosphate))3001380.5183
LIPA-CORESYN-PWY (Lipid A-core biosynthesis)1761000.4981
PWY-5918 (heme biosynthesis I)2721280.4955
PWY-5913 (TCA cycle variation IV)3011340.4860
PHOSLIPSYN-PWY (phospholipid biosynthesis I)2901310.4836
PWY-1269 (CMP-KDO biosynthesis I)3251390.4818
PWY4FS-7 (phosphatidylglycerol biosynthesis I (plastidic))2911310.4817
PWY0-1319 (CDP-diacylglycerol biosynthesis II)2961320.4800
PWY-5755 (4-hydroxybenzoate biosynthesis II (bacteria and fungi))81610.4760
KDO-LIPASYN-PWY (KDO2-lipid A biosynthesis I)2251120.4716
HEME-BIOSYNTHESIS-II (heme biosynthesis from uroporphyrinogen-III I)2861280.4683
NAGLIPASYN-PWY (lipid IVA biosynthesis)3481420.4667
PWY-5386 (methylglyoxal degradation I)3051310.4560
GLUTATHIONESYN-PWY (glutathione biosynthesis)3391380.4507
PWY-5861 (superpathway of demethylmenaquinone-8 biosynthesis)50430.4385
PWY-4041 (γ-glutamyl cycle)2791220.4359
P184-PWY (protocatechuate degradation I (meta-cleavage pathway))94620.4258
GALACTITOLCAT-PWY (galactitol degradation)73530.4253
GLUCONSUPER-PWY (D-gluconate degradation)2291060.4152
3-HYDROXYPHENYLACETATE-DEGRADATION-PWY (4-hydroxyphenylacetate degradation)149810.4125
PWY-5148 (acyl-CoA hydrolysis)2271050.4117
PWY-5857 (ubiquinone-10 biosynthesis (prokaryotic))183910.4037
ENTNER-DOUDOROFF-PWY (Entner-Doudoroff pathway I)2491100.4036
GLYCOLYSIS-E-D (superpathway of glycolysis and Entner-Doudoroff)2491100.4036



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PAIRWISE GENOME CONTEXT SCORE MATRIX:

  G7529   G7528   G7527   G7526   G7524   EG11779   
G75300.999120.9992310.9990030.9989660.9988750.998971
G75290.9996360.9993520.9991770.9986730.998902
G75280.9996720.9994990.9991660.999118
G75270.9997330.9990220.998582
G75260.9991670.998726
G75240.998769
EG11779



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PAIRWISE BLAST SCORES:

  G7530   G7529   G7528   G7527   G7526   G7524   EG11779   
G75300.0f0------
G7529-0.0f0-----
G7528--0.0f0----
G7527---0.0f0---
G7526----0.0f0--
G7524-----0.0f0-
EG11779------0.0f0



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PATHWAYS OR PROTEIN COMPLEX MATCHES IN TARGET ORG:

For each case, all genes involved in the pathway or complex are listed. For each gene we list: a tag indicating whether the gene is part of the candidate list or not, the average and the minimum scores of the gene to the candidate list, the gene name, and its product names.



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GENOME CONTEXT INFORMATION:

Each row corresponds to a replicon in an organism, each column to a gene in the candidate. The second column indicates whether the organims was included in the list used to compute the genome context scores or not. Some organisms are not included because they are phylogenetically too similar to others already in the list.
The number in the matrix indicate the position of the homolog of the gene in the replicon. All numbers are relative to the smaller one, which is assigned a position of zero. Two columns with the same number indicate that the two genes matched the same gene in that organism.

Genome browser links for gene clusters

The links below opens a genome browser BioCyc page for each cluster of genes in the target genome. These pages shows the central gene of the cluster in the target genome and its best homolog in the reference genomes, for the genomes that contain homologs for at least 75% of the genes in the group. Only one genome per phylogenetic cluster of organisms is shown, to keep the list smaller.

G7524 G7526 G7527 G7528 G7529 G7530 (centered at G7528)
EG11779 (centered at EG11779)


ORG:REPLICON:CIRC?\GENE  IN REF LIST  G7530   G7529   G7528   G7527   G7526   G7524   EG11779   
406/623154/623246/623396/623241/623316/623406/623
AAEO224324:0:Tyes101--153481-0
AAUR290340:2:Tyes0-----976
AAVE397945:0:Tyes2888-562102642359
ABAC204669:0:Tyes13552838-28370--
ABAU360910:0:Tyes1478-25401148-25660
ABOR393595:0:Tyes2508-25972599260002503
ABUT367737:0:Tyes--3450--131
ACAU438753:0:Tyes--3340265-4760
ACEL351607:0:Tyes668--0306689-
ACRY349163:8:Tyes---1006--0
ADEH290397:0:Tyes2765466-1896033733195
AEHR187272:0:Tyes2395-3023043053120
AFER243159:0:Tyes698268126802678267702670
AHYD196024:0:Tyes0272027212723272422332559
AMAR329726:9:Tyes4213-105648970-1491
AMET293826:0:Tyes0--18062469--
ANAE240017:0:Tyes0--168--157
AORE350688:0:Tyes0-8468441073--
APLE416269:0:Tyes420135113520-1851354
APLE434271:0:Tno427134313440-1881346
ASAL382245:5:Tyes249926792680268226833440
ASP1667:3:Tyes1010--0--2217
ASP232721:2:Tyes493-27321030551508
ASP62928:0:Tyes50656890510
ASP62977:0:Tyes154-24935275260897
ASP76114:2:Tyes34356890346
AVAR240292:3:Tyes20033533274325340-4424
BABO262698:1:Tno--14131241-01573
BAMB339670:3:Tno239-1880-117175
BAMB398577:3:Tno219-1690-107159
BAMY326423:0:Tyes1021--0--1179
BANT260799:0:Tno626-02--843
BANT261594:2:Tno648-02--868
BANT568206:2:Tyes4070-20--4298
BANT592021:2:Tno657-02--883
BAPH198804:0:Tyes---0--2
BBAC264462:0:Tyes-0-33134--
BBAC360095:0:Tyes-209-0--1063
BBRO257310:0:Tyes2460-3909237528039350
BCAN483179:1:Tno--15031311-01663
BCEN331271:2:Tno272-2220-134191
BCEN331272:3:Tyes265-2170-133187
BCER226900:1:Tyes588-02--787
BCER288681:0:Tno576-02--790
BCER315749:1:Tyes640--0--794
BCER405917:1:Tyes613-02--862
BCER572264:1:Tno583-02--807
BCIC186490:0:Tyes-----0-
BCLA66692:0:Tyes317--0--442
BFRA272559:1:Tyes---727-0-
BFRA295405:0:Tno---915-0-
BHAL272558:0:Tyes533-02--727
BHEN283166:0:Tyes-0-1261-26450
BJAP224911:0:Fyes--075-956242
BLIC279010:0:Tyes1194-0----
BLON206672:0:Tyes0-----1391
BMAL243160:1:Tno85-137372-0143
BMAL320388:1:Tno478-4190-577412
BMAL320389:1:Tyes103-162725-0170
BMEL224914:1:Tno---0-12431763
BMEL359391:1:Tno--13641201-01520
BOVI236:1:Tyes---1122-01421
BPAR257311:0:Tno2357-32522276-32780
BPER257313:0:Tyes1147-2403900-03054
BPET94624:0:Tyes1725-192356-03805
BPSE272560:1:Tyes0-72283-13079
BPSE320372:1:Tno0-61307-12268
BPSE320373:1:Tno0-71335-15298
BPUM315750:0:Tyes1036-20--1179
BQUI283165:0:Tyes-10938-18450
BSP107806:2:Tyes---0--2
BSP36773:2:Tyes289-2320-144204
BSP376:0:Tyes--219133-9720
BSUB:0:Tyes1350-20--1507
BSUI204722:1:Tyes--14591284-01626
BSUI470137:0:Tno---0---
BSUI470137:1:Tno--1286--01448
BTHA271848:1:Tno290-2320-173224
BTHE226186:0:Tyes---262-0-
BTHU281309:1:Tno573-02--785
BTHU412694:1:Tno527--0--718
BTRI382640:1:Tyes-0-1787-42652
BVIE269482:7:Tyes220-1730-106157
BWEI315730:4:Tyes592-02--795
CABO218497:0:Tyes-0---344489
CACE272562:1:Tyes985--4230--
CAULO:0:Tyes-3628-3751-33920
CBEI290402:0:Tyes0--1218754--
CBLO203907:0:Tyes-----0-
CBLO291272:0:Tno-----0-
CBOT36826:1:Tno1788--01072--
CBOT441770:0:Tyes1767--0904--
CBOT441771:0:Tno1625--0871--
CBOT441772:1:Tno1798--01024--
CBOT498213:1:Tno1783--0980--
CBOT508765:1:Tyes0--1969729--
CBOT515621:2:Tyes1916--01187--
CBOT536232:0:Tno1906--01108--
CBUR227377:1:Tyes0-19661968-1970-
CBUR360115:1:Tno0-19541956-1959-
CBUR434922:2:Tno900010271029-1032-
CCAV227941:1:Tyes-0---377521
CCHL340177:0:Tyes---0-253-
CCON360104:2:Tyes----121-0
CCUR360105:0:Tyes--146-0-110
CDES477974:0:Tyes547-4504530--
CDIF272563:1:Tyes690--0892--
CDIP257309:0:Tyes110--0-608429
CEFF196164:0:Fyes0-----308
CFEL264202:1:Tyes-----1410
CFET360106:0:Tyes----0--
CGLU196627:0:Tyes0----598372
CHOM360107:1:Tyes--92-338-0
CHUT269798:0:Tyes---873-0-
CHYD246194:0:Tyes0-16781681302--
CJAP155077:0:Tyes39875403346
CJEI306537:0:Tyes368-----0
CJEJ192222:0:Tyes--0----
CJEJ195099:0:Tno--0----
CJEJ354242:2:Tyes--0----
CJEJ360109:0:Tyes--0----
CJEJ407148:0:Tno--0----
CKLU431943:1:Tyes2243--0144--
CKOR374847:0:Tyes-0-----
CMIC31964:2:Tyes---0---
CMIC443906:2:Tyes0--578---
CMUR243161:1:Tyes-----0-
CNOV386415:0:Tyes878--0321--
CPEL335992:0:Tyes---2870--
CPER195102:1:Tyes530--870--
CPER195103:0:Tno472--840--
CPER289380:3:Tyes463--850--
CPHY357809:0:Tyes0--1972---
CPNE115711:1:Tyes-0---369-
CPNE115713:0:Tno-355---0-
CPNE138677:0:Tno-364---0-
CPNE182082:0:Tno-383---0-
CPRO264201:0:Fyes-0-1259-1279803
CPSY167879:0:Tyes2341-23392337233602806
CRUT413404:0:Tyes0--3--716
CSAL290398:0:Tyes3304-30503048304703141
CSP501479:7:Fyes-0---540-
CSP501479:8:Fyes---0--2632
CSP78:2:Tyes145--5044-44990
CTEP194439:0:Tyes-1152-1134-0-
CTET212717:0:Tyes1164--4700--
CTRA471472:0:Tyes-----0-
CTRA471473:0:Tno-----0-
CVES412965:0:Tyes0--4--646
CVIO243365:0:Tyes764-02338303707
DARO159087:0:Tyes035343231418
DDES207559:0:Tyes0169616983141---
DETH243164:0:Tyes447--0156--
DGEO319795:1:Tyes1936---01621817
DHAF138119:0:Tyes844--5030--
DNOD246195:0:Tyes450--0462-1003
DOLE96561:0:Tyes850280090127991298-
DPSY177439:2:Tyes09593213610231559-
DRAD243230:3:Tyes0---17521721474
DRED349161:0:Tyes1979520319--
DSHI398580:5:Tyes---0-3082999
DSP216389:0:Tyes365--0128--
DSP255470:0:Tno363--0129--
DVUL882:1:Tyes30871317-01205--
ECAR218491:0:Tyes2695269426932691269029900
ECOL199310:0:Tno65432013
ECOL316407:0:Tno65432012
ECOL331111:6:Tno76543014
ECOL362663:0:Tno65432012
ECOL364106:1:Tno65432013
ECOL405955:2:Tyes65432012
ECOL409438:6:Tyes65432013
ECOL413997:0:Tno65432012
ECOL439855:4:Tno65432013
ECOL469008:0:Tno7891011130
ECOL481805:0:Tno678910120
ECOL585034:0:Tno65432012
ECOL585035:0:Tno65432012
ECOL585055:0:Tno65432012
ECOL585056:2:Tno65432015
ECOL585057:0:Tno65432016
ECOL585397:0:Tno65432012
ECOL83334:0:Tno65432012
ECOLI:0:Tno65432012
ECOO157:0:Tno65432012
EFAE226185:3:Tyes0------
EFER585054:1:Tyes65432015
ELIT314225:0:Tyes0--1179--1662
ESP42895:1:Tyes87654013
FALN326424:0:Tyes0--681---
FJOH376686:0:Tyes---3342-0-
FMAG334413:1:Tyes---0---
FNOD381764:0:Tyes---0124-874
FNUC190304:0:Tyes---10770--
FPHI484022:1:Tyes554-0-3341117636
FRANT:0:Tno1377-81-0838-
FSP106370:0:Tyes0--555---
FSP1855:0:Tyes562--0---
FSUC59374:0:Tyes---3340--
FTUL351581:0:Tno0-1206--580-
FTUL393011:0:Tno0-1067--53166
FTUL393115:0:Tyes1350-79-0827-
FTUL401614:0:Tyes1306-0-14597091239
FTUL418136:0:Tno163-1456-0623-
FTUL458234:0:Tno0-1103--54367
GBET391165:0:Tyes--02065-16012120
GFOR411154:0:Tyes---544-13220
GKAU235909:1:Tyes1554-201517-1712
GMET269799:1:Tyes98726326502507-2140
GOXY290633:5:Tyes0--309-175-
GSUL243231:0:Tyes135042642820990-84
GTHE420246:1:Tyes1564-201529-1699
GURA351605:0:Tyes130322021827183300-0
GVIO251221:0:Tyes03347-1732162--
HACI382638:1:Tyes------0
HARS204773:0:Tyes1721-23341023082267
HAUR316274:2:Tyes0--609---
HCHE349521:0:Tyes5617561256115609560805620
HDUC233412:0:Tyes9174224210-1306419
HHAL349124:0:Tyes66564164063806312098
HHEP235279:0:Tyes--01122---
HINF281310:0:Tyes177-9400-222262
HINF374930:0:Tyes85-961256-400
HINF71421:0:Tno159-9230-203236
HMOD498761:0:Tyes01765-1759216--
HNEP81032:0:Tyes3148--3388-9280
HPY:0:Tno------0
HPYL357544:1:Tyes------0
HPYL85963:0:Tno------0
HSOM205914:1:Tyes115164816491213-01657
HSOM228400:0:Tno1678148714880-15681494
ILOI283942:0:Tyes6-3102478
JSP290400:1:Tyes---0-3522295
JSP375286:0:Tyes1010-26731026472625
KPNE272620:2:Tyes76543011
KRAD266940:2:Fyes12--592767052
LACI272621:0:Tyes0-----1127
LBIF355278:2:Tyes-----0-
LBIF456481:2:Tno-----0-
LBOR355276:1:Tyes0----22162509
LBOR355277:1:Tno2448----2840
LBRE387344:2:Tyes0------
LCAS321967:1:Tyes0------
LCHO395495:0:Tyes3230-1251125236071542
LDEL321956:0:Tyes46-----0
LDEL390333:0:Tyes51-----0
LGAS324831:0:Tyes0-----965
LHEL405566:0:Tyes0-----957
LINN272626:1:Tno0--961--454
LINT189518:1:Tyes3553----35970
LINT267671:1:Tno416----3880
LINT363253:3:Tyes36--0---
LJOH257314:0:Tyes0-----979
LLAC272622:5:Tyes569-----0
LLAC272623:0:Tyes532-----0
LMES203120:1:Tyes0------
LMON169963:0:Tno0-----377
LMON265669:0:Tyes0-----388
LPLA220668:0:Tyes0------
LPNE272624:0:Tno199922301532153015291040
LPNE297245:1:Fno188121211468146614651030
LPNE297246:0:Fyes-0-----
LPNE297246:1:Fyes2004-145514531452980
LPNE400673:0:Tno486-31011931336
LREU557436:0:Tyes0--679--751
LSAK314315:0:Tyes0------
LSPH444177:1:Tyes2465--0--2628
LWEL386043:0:Tyes0-----437
LXYL281090:0:Tyes415--558--0
MABS561007:1:Tyes0--531-34523031
MAER449447:0:Tyes412--52250-4250
MAQU351348:2:Tyes3-8101132060
MAVI243243:0:Tyes1481--2252-04849
MBOV233413:0:Tno1350--2150-0173
MBOV410289:0:Tno1342--2105-0172
MCAP243233:0:Tyes1424-2457650
MEXT419610:0:Tyes-55021950-10181730
MFLA265072:0:Tyes0-2064206220612053189
MGIL350054:3:Tyes1913----3890
MHYO262719:0:Tyes------0
MHYO262722:0:Tno------0
MLEP272631:0:Tyes727--566-01585
MLOT266835:2:Tyes---0-27861165
MMAG342108:0:Tyes44774353-0-8624448
MMAR394221:0:Tyes776--718-0805
MMAZ192952:0:Tyes---0---
MMOB267748:0:Tyes------0
MPET420662:1:Tyes1993--3047304802139
MSME246196:0:Tyes4611--1769-66070
MSP164756:1:Tno3686----52500
MSP164757:0:Tno3662----56100
MSP189918:2:Tyes3740----53190
MSP266779:3:Tyes---2471-03191
MSP400668:0:Tyes3864-86-0226
MSP409:2:Tyes--24140-46813741
MSUC221988:0:Tyes154464631497-060
MTBCDC:0:Tno1399--2247-0173
MTBRV:0:Tno1319--2127-0169
MTHE264732:0:Tyes0-3283251012--
MTUB336982:0:Tno1334--2129-0173
MTUB419947:0:Tyes1350--2188-0174
MVAN350058:0:Tyes4048----58160
MXAN246197:0:Tyes0--6153651103654
NARO279238:0:Tyes1780----3800
NEUR228410:0:Tyes012312270370214136
NEUT335283:2:Tyes0180918101999199813510
NFAR247156:2:Tyes0--685-44614434
NGON242231:0:Tyes0--15471548328334
NHAM323097:2:Tyes--57969-34050
NMEN122586:0:Tno564--1012351227
NMEN122587:0:Tyes593--0112331225
NMEN272831:0:Tno494--1011001094
NMEN374833:0:Tno521--1011771171
NMUL323848:3:Tyes05115122643-23912
NOCE323261:1:Tyes203825912592259425950648
NSEN222891:0:Tyes------0
NSP103690:6:Tyes46492735158701975-1366
NSP35761:1:Tyes197--194401622805
NSP387092:0:Tyes-75746-420-0
NWIN323098:0:Tyes--46870-27640
OANT439375:4:Tyes---0---
OANT439375:5:Tyes--387--0148
OCAR504832:0:Tyes--050-3013203
OIHE221109:0:Tyes634--0--823
PABY272844:0:Tyes-0-----
PACN267747:0:Tyes696--0-363825
PAER208963:0:Tyes510111314240
PAER208964:0:Tno5-101213230
PARC259536:0:Tyes1898-11021621501688
PATL342610:0:Tyes323933036713669366810790
PCAR338963:0:Tyes16412142120473-365
PCRY335284:1:Tyes2163-11623223101944
PDIS435591:0:Tyes---0-880-
PENT384676:0:Tyes3-791044660
PFLU205922:0:Tyes15111087018
PFLU216595:1:Tyes14-1087017
PFLU220664:0:Tyes15111087019
PFUR186497:0:Tyes-0-----
PGIN242619:0:Tyes---0---
PHAL326442:1:Tyes2095-20932091209020870
PING357804:0:Tyes251325112510250825078790
PINT246198:1:Tyes---0---
PLUM243265:0:Fyes7-81011130
PLUT319225:0:Tyes-0-140-294-
PMAR167539:0:Tyes--674---0
PMAR167546:0:Tyes----0--
PMAR167555:0:Tyes0------
PMAR59920:0:Tno0------
PMAR74546:0:Tyes----0--
PMAR74547:0:Tyes1897-6811970--
PMEN399739:0:Tyes3805380037993797379603813
PMOB403833:0:Tyes---0--29
PMUL272843:1:Tyes1554120112020-17571205
PNAP365044:8:Tyes54110121772030912673
PPEN278197:0:Tyes554-----0
PPRO298386:2:Tyes97643013
PPUT160488:0:Tno104-10098970107
PPUT351746:0:Tyes104-10098970107
PPUT76869:0:Tno105-10199980108
PSP117:0:Tyes01757--42253071518
PSP296591:2:Tyes94022502285107392493
PSP312153:0:Tyes8541807-1561-019
PSP56811:2:Tyes163-1931758175901632
PSTU379731:0:Tyes17-12109026
PSYR205918:0:Tyes0-356134286
PSYR223283:2:Tyes4563-45604558455745490
PTHE370438:0:Tyes0105910631066378--
RAKA293614:0:Fyes-----01202
RALB246199:0:Tyes0--1168108--
RBEL336407:0:Tyes-----01247
RBEL391896:0:Fno-----0144
RCAN293613:0:Fyes-----0-
RCAS383372:0:Tyes322--0---
RCON272944:0:Tno-----01304
RDEN375451:4:Tyes---0-31623626
RETL347834:5:Tyes--35083711-5930
REUT264198:2:Tyes--0----
REUT264198:3:Tyes1789--21152114051
REUT381666:1:Tyes--0----
REUT381666:2:Tyes0--2087208618991853
RFEL315456:2:Tyes-----01330
RFER338969:1:Tyes88101036313031296281147
RLEG216596:6:Tyes-4121-4347-6570
RMAS416276:1:Tyes-----0935
RMET266264:1:Tyes--0----
RMET266264:2:Tyes0--2073207218791840
RPAL258594:0:Tyes---2365-4770
RPAL316055:0:Tyes---191-5110
RPAL316056:0:Tyes--0224-732418
RPAL316057:0:Tyes--4652088-41510
RPAL316058:0:Tyes--0278-4418494
RPOM246200:0:Tyes------0
RPOM246200:1:Tyes-631-3068-0-
RPRO272947:0:Tyes-----0800
RRIC392021:0:Fno-----01263
RRIC452659:0:Tyes-----01303
RRUB269796:1:Tyes35113397-1019029313648
RSAL288705:0:Tyes0-----415
RSOL267608:0:Tyes--0----
RSOL267608:1:Tyes1525--20522051028
RSP101510:3:Fyes349--0-25404080
RSP357808:0:Tyes0--997---
RSPH272943:3:Tyes------0
RSPH272943:4:Tyes---0-160-
RSPH349101:1:Tno------0
RSPH349101:2:Tno---0-160-
RSPH349102:4:Tyes------0
RSPH349102:5:Tyes-149-2879-0-
RTYP257363:0:Tno-----0736
RXYL266117:0:Tyes---3220-858
SACI56780:0:Tyes7719059042730--
SAGA205921:0:Tno1124--119--0
SAGA208435:0:Tno1193-----0
SAGA211110:0:Tyes1222--124--0
SALA317655:1:Tyes91--2888-03002
SARE391037:0:Tyes682415-2420-0778
SAUR158878:1:Tno0-----597
SAUR158879:1:Tno0-----591
SAUR196620:0:Tno0-----658
SAUR273036:0:Tno0-----580
SAUR282458:0:Tno0-----692
SAUR282459:0:Tno0-----595
SAUR359786:1:Tno0-----585
SAUR359787:1:Tno0-----596
SAUR367830:3:Tno0-----639
SAUR418127:0:Tyes0-----593
SAUR426430:0:Tno0-----578
SAUR93061:0:Fno0-----718
SAUR93062:1:Tno0-----621
SAVE227882:1:Fyes1090--2057-10460
SBAL399599:3:Tyes119865018
SBAL402882:1:Tno119865018
SBOY300268:1:Tyes678910120
SCO:2:Fyes832--0-8782064
SDEG203122:0:Tyes55-514948450
SDEN318161:0:Tyes12-1087023
SDYS300267:1:Tyes678910120
SELO269084:0:Tyes---905895-0
SENT209261:0:Tno76543014
SENT220341:0:Tno76543014
SENT295319:0:Tno76543013
SENT321314:2:Tno76543014
SENT454169:2:Tno76543014
SEPI176279:1:Tyes0-----563
SEPI176280:0:Tno0-----578
SERY405948:0:Tyes0--4507-60405922
SFLE198214:0:Tyes65432018
SFLE373384:0:Tno65432016
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