CANDIDATE ID: 272

CANDIDATE ID: 272

NUMBER OF GENES: 7
AVERAGE SCORE:    9.9935405e-1 (range=[0.0,1.0])
AVERAGE MINIMUM BLAST P-VAL:    8.5714286e-1

Gene List
List of organisms containing most genes from the group
    Phylogenetic tree highlighting these organisms (opens new page)
List of organisms containing very few or no genes from the group
List of organisms enriched for group
List of organisms depleted for group
Phylogenetic profile similarity with known pathways
Pairwise genome context scores
Pairwise Blast scores
Pathway or protein complex matches in target organism
Genome context matrix
    Genes and their orthologs in genome browser BioCyc pages




GENE LIST:

- G7880 (yjgI) (b4249)
   Products of gene:
     - G7880-MONOMER (predicted oxidoreductase with NAD(P)-binding Rossmann-fold domain)

- G7440 (ygcW) (b2774)
   Products of gene:
     - G7440-MONOMER (predicted deoxygluconate dehydrogenase)

- EG50003 (acpP) (b1094)
   Products of gene:
     - EG50003-MONOMER (apo-[acyl carrier protein])
       Regulatees:
     - ACP-MONOMER (holo-[acyl-carrier protein])
       Regulatees:
     - MYRISTOYL-ACP (myristoyl-ACP)
       Regulatees:
     - B-HYDROXYBUTYRYL-S-ACP (β-3-hydroxybutyryl-S-ACP)
       Regulatees:
     - LAUROYL-ACP (lauroyl-ACP)
       Regulatees:
     - TRANS-DELTA3-CIS-DELTA5-DODECENOYL-ACP (trans-Δ3-cis-Δ5-dodecenoyl-ACP)
     - STEAROYL-ACYL-CARRIER-PROTEIN (stearoyl-ACP)
       Regulatees:
     - R-3-HYDROXYPALMITOYL-ACP (R-3-hydroxypalmitoyl-ACP)
     - BUTYRYL-ACP (butyryl-ACP)
       Regulatees:
     - OLEOYL-ACYL-CARRIER-PROTEIN (oleoyl-ACP)
       Regulatees:
     - ACETOACETYL-S-ACP (acetoacetyl-ACP)
       Regulatees:
     - MONOMER-4603 (3R-3-hydroxybutanoyl-ACP)
     - CROTONYL-ACP (crotonyl-[acp])
       Regulatees:
     - MONOMER-4565 (2-octenoyl-ACP)
     - CIS-DELTA5-DODECENOYL-ACP (cis-Δ5-dodecenoyl-ACP)
     - BUT-2-ENOYL-ACP (but-2-enoyl-ACP)
     - PALMITOLEOYL-ACP (palmitoleoyl-ACP)
       Regulatees:
     - BETA-KETO-CIS-DELTA5-DODECENOYL-ACP (β-keto-cis-Δ5-dodecenoyl-ACP)
     - TRANS-D2-DECENOYL-ACP (trans-Δ2-decenoyl-[acp])
       Regulatees:
     - BETA-HYDROXY-CIS-DELTA5-DODECENOYL-ACP (β-hydroxy-cis-Δ5-dodecenoyl-ACP)
     - LIPOYL-ACP (lipoyl-ACP)
       Regulatees:
     - 3R-3-HYDROXYOCTANOYL-ACP ((3R)-3-hydroxyoctanoyl-ACP)
     - CIS-3-4-DEHYDRODECANOYL-ACP (cis-3,4-dehydrodecanoyl-ACP)
     - 2-HEXADECENOYL-ACP (2-hexadecenoyl-ACP)
     - CIS-DELTA3-DECENOYL-ACP (cis-Δ3-decenoyl-ACP)
     - SUCC-ACP (succ-ACP)
     - BETA-HYDROXYDECANOYL-ACP (β-hydroxydecanoyl-ACP)
       Regulatees:
     - OCTANOYL-ACP (octanoyl-ACP)
       Regulatees:
     - ACETYL-ECACP (acetyl-ACP)
       Regulatees:

- EG12606 (fabF) (b1095)
   Products of gene:
     - 3-OXOACYL-ACP-SYNTHII-MONOMER (FabF)
     - 3-OXOACYL-ACP-SYNTHII-CPLX (KASII)
       Reactions:
        a palmitoleoyl-[acp] + a malonyl-[acp]  ->  a 3-oxo-cis-vaccenoyl-[acp] + CO2 + a holo-[acp]
         In pathways
         PWY-6284 (superpathway of unsaturated fatty acids biosynthesis (E. coli))
         PWY-6285 (PWY-6285)
         PWY-5973 (cis-vaccenate biosynthesis)
        a malonyl-[acp] + an acetyl-[acp]  ->  a holo-[acp] + an acetoacetyl-[acp] + CO2
         In pathways
         PWY0-881 (superpathway of fatty acid biosynthesis I (E. coli))
         FASYN-INITIAL-PWY (superpathway of fatty acid biosynthesis initiation (E. coli))
         PWY-5965 (fatty acid biosynthesis initiation III)
         PWY-5966 (fatty acid biosynthesis initiation II)
        a malonyl-[acp] + a 2,3,4-saturated fatty acyl-[acp]  ->  a holo-[acp] + a beta-ketoacyl-[acp] + CO2
         In pathways
         PWY0-881 (superpathway of fatty acid biosynthesis I (E. coli))
         FASYN-ELONG-PWY (fatty acid elongation -- saturated)

- EG12019 (yohF) (b2137)
   Products of gene:
     - EG12019-MONOMER (predicted oxidoreductase with NAD(P)-binding Rossmann-fold domain)
       Reactions:
        acetoin + NADP+  =  diacetyl + NADPH + H+

- EG11318 (fabG) (b1093)
   Products of gene:
     - 3-OXOACYL-ACP-REDUCT-MONOMER (3-oxo-acyl-[acyl-carrier-protein] reductase)
       Reactions:
        a 3-oxo-glutaryl-[acp] methyl ester + NADPH + H+  ->  a 3-hydroxyglutaryl-[acp] methyl ester + NADP+
         In pathways
         BIOTIN-BIOSYNTHESIS-PWY (biotin biosynthesis I)
         PWY-6519 (7-keto-8-aminopelargonate biosynthesis I)
        a 3-oxo-pimeloyl-[acp] methyl ester + NADPH + H+  ->  a 3-hydroxypimeloyl-[acp] methyl ester + NADP+
         In pathways
         BIOTIN-BIOSYNTHESIS-PWY (biotin biosynthesis I)
         PWY-6519 (7-keto-8-aminopelargonate biosynthesis I)
        a 3-oxo-cis-delta9-hexadecenoyl-[acp] + NADPH + H+  ->  a 3-hydroxy cis delta9-hexadecenoyl-[acp] + NADP+
         In pathways
         PWY-6284 (superpathway of unsaturated fatty acids biosynthesis (E. coli))
         PWY-6285 (PWY-6285)
         PWY-6282 (palmitoleate biosynthesis I)
        a 3-oxo-cis-delta7-tetradecenoyl-[acp] + NADPH + H+  ->  a 3-hydroxy cis delta7-tetradecenoyl-[acp] + NADP+
         In pathways
         PWY-6284 (superpathway of unsaturated fatty acids biosynthesis (E. coli))
         PWY-6285 (PWY-6285)
         PWY-6282 (palmitoleate biosynthesis I)
        a 3-oxo-cis-delta5-dodecenoyl-[acp] + NADPH + H+  ->  a 3-hydroxy cis delta5-dodecenoyl-[acp] + NADP+
         In pathways
         PWY-6285 (PWY-6285)
         PWY-6284 (superpathway of unsaturated fatty acids biosynthesis (E. coli))
         PWY0-881 (superpathway of fatty acid biosynthesis I (E. coli))
         PWY0-862 (cis-dodecenoyl biosynthesis)
        a (3R)-3-hydroxyacyl-[acp] + NADP+  =  a beta-ketoacyl-[acp] + NADPH + H+
         In pathways
         PWY-5989 (PWY-5989)
         PWY-6284 (superpathway of unsaturated fatty acids biosynthesis (E. coli))
         PWY-5973 (cis-vaccenate biosynthesis)
         PWY-6285 (PWY-6285)
         PWY-6113 (PWY-6113)
         PWY-5156 (PWY-5156)
         PWY-5994 (PWY-5994)
         PWY-5971 (palmitate biosynthesis II (bacteria and plants))
         PWY0-881 (superpathway of fatty acid biosynthesis I (E. coli))
         FASYN-ELONG-PWY (fatty acid elongation -- saturated)

- EG11317 (fabD) (b1092)
   Products of gene:
     - MALONYL-COA-ACP-TRANSACYL-MONOMER (malonyl-CoA-ACP transacylase)
       Reactions:
        a holo-[acp] + malonyl-CoA  =  a malonyl-[acp] + coenzyme A
         In pathways
         PWY0-881 (superpathway of fatty acid biosynthesis I (E. coli))
         FASYN-INITIAL-PWY (superpathway of fatty acid biosynthesis initiation (E. coli))
         PWY-5156 (PWY-5156)
         PWY-6113 (PWY-6113)
         PWY-6285 (PWY-6285)
         PWY-4381 (fatty acid biosynthesis initiation I)



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ORGANISMS CONTAINING AT LEAST 6 GENES FROM THE GROUP:

Total number of orgs: 199
Effective number of orgs (counting one per cluster within 468 clusters): 136

Organism list
Homologs in each organism in the list
Features enriched in organism list


Follow (ncbi) link, when present, to find the set of organism features for each organism
Org ID  Org Name  # genes in group found in org  
YPSE349747 ncbi Yersinia pseudotuberculosis IP 317586
YPSE273123 ncbi Yersinia pseudotuberculosis IP 329536
YPES386656 ncbi Yersinia pestis Pestoides F6
YPES377628 ncbi Yersinia pestis Nepal5166
YPES360102 ncbi Yersinia pestis Antiqua6
YPES349746 ncbi Yersinia pestis Angola6
YPES214092 ncbi Yersinia pestis CO926
YPES187410 ncbi Yersinia pestis KIM 106
XCAM487884 Xanthomonas campestris pv. paulliniae6
XCAM316273 ncbi Xanthomonas campestris pv. vesicatoria str. 85-106
XCAM314565 ncbi Xanthomonas campestris pv. campestris str. 80046
XCAM190485 ncbi Xanthomonas campestris pv. campestris str. ATCC 339136
XAXO190486 ncbi Xanthomonas axonopodis pv. citri str. 3067
XAUT78245 ncbi Xanthobacter autotrophicus Py26
VVUL216895 ncbi Vibrio vulnificus CMCP66
VVUL196600 ncbi Vibrio vulnificus YJ0166
VPAR223926 ncbi Vibrio parahaemolyticus RIMD 22106336
VFIS312309 ncbi Vibrio fischeri ES1146
TTEN273068 ncbi Thermoanaerobacter tengcongensis MB47
TSP1755 Thermoanaerobacter sp.7
TPSE340099 ncbi Thermoanaerobacter pseudethanolicus ATCC 332237
TDEN292415 ncbi Thiobacillus denitrificans ATCC 252596
STYP99287 ncbi Salmonella enterica enterica serovar Typhimurium str. LT27
STHE292459 ncbi Symbiobacterium thermophilum IAM 148637
SSON300269 ncbi Shigella sonnei Ss0467
SSAP342451 ncbi Staphylococcus saprophyticus saprophyticus ATCC 153056
SRUB309807 ncbi Salinibacter ruber DSM 138556
SPRO399741 ncbi Serratia proteamaculans 5687
SMEL266834 ncbi Sinorhizobium meliloti 10216
SMED366394 ncbi Sinorhizobium medicae WSM4197
SHIGELLA ncbi Shigella flexneri 2a str. 2457T6
SHAE279808 ncbi Staphylococcus haemolyticus JCSC14356
SFUM335543 ncbi Syntrophobacter fumaroxidans MPOB6
SFLE373384 ncbi Shigella flexneri 5 str. 84016
SFLE198214 ncbi Shigella flexneri 2a str. 3016
SEPI176280 ncbi Staphylococcus epidermidis ATCC 122286
SEPI176279 ncbi Staphylococcus epidermidis RP62A6
SENT454169 ncbi Salmonella enterica enterica serovar Heidelberg str. SL4767
SENT321314 ncbi Salmonella enterica enterica serovar Choleraesuis str. SC-B677
SENT295319 ncbi Salmonella enterica enterica serovar Paratyphi A str. ATCC 91507
SENT220341 ncbi Salmonella enterica enterica serovar Typhi str. CT187
SENT209261 ncbi Salmonella enterica enterica serovar Typhi str. Ty27
SELO269084 ncbi Synechococcus elongatus PCC 63016
SDYS300267 ncbi Shigella dysenteriae Sd1977
SDEG203122 ncbi Saccharophagus degradans 2-406
SBOY300268 ncbi Shigella boydii Sb2277
SBAL402882 ncbi Shewanella baltica OS1856
SALA317655 ncbi Sphingopyxis alaskensis RB22566
RSPH272943 ncbi Rhodobacter sphaeroides 2.4.16
RSP357808 ncbi Roseiflexus sp. RS-16
RSOL267608 ncbi Ralstonia solanacearum GMI10007
RRUB269796 ncbi Rhodospirillum rubrum ATCC 111706
RPAL316058 ncbi Rhodopseudomonas palustris HaA26
RPAL316055 ncbi Rhodopseudomonas palustris BisA536
RPAL258594 ncbi Rhodopseudomonas palustris CGA0096
RMET266264 ncbi Ralstonia metallidurans CH346
RLEG216596 ncbi Rhizobium leguminosarum bv. viciae 38417
REUT264198 ncbi Ralstonia eutropha JMP1347
RETL347834 ncbi Rhizobium etli CFN 426
RCAS383372 ncbi Roseiflexus castenholzii DSM 139417
PSYR223283 ncbi Pseudomonas syringae pv. tomato str. DC30006
PSYR205918 ncbi Pseudomonas syringae pv. syringae B728a6
PSTU379731 ncbi Pseudomonas stutzeri A15016
PSP312153 ncbi Polynucleobacter necessarius asymbioticus QLW-P1DMWA-17
PSP296591 ncbi Polaromonas sp. JS6667
PPUT76869 ncbi Pseudomonas putida GB-16
PPUT351746 ncbi Pseudomonas putida F16
PPUT160488 ncbi Pseudomonas putida KT24406
PPRO298386 ncbi Photobacterium profundum SS96
PMEN399739 ncbi Pseudomonas mendocina ymp6
PMAR74547 ncbi Prochlorococcus marinus MIT 93136
PMAR59920 ncbi Prochlorococcus marinus NATL2A6
PMAR167555 ncbi Prochlorococcus marinus NATL1A6
PFLU216595 ncbi Pseudomonas fluorescens SBW256
PFLU205922 ncbi Pseudomonas fluorescens Pf0-16
PCAR338963 ncbi Pelobacter carbinolicus DSM 23806
PATL342610 ncbi Pseudoalteromonas atlantica T6c6
OIHE221109 ncbi Oceanobacillus iheyensis HTE8317
OANT439375 ncbi Ochrobactrum anthropi ATCC 491887
MXAN246197 ncbi Myxococcus xanthus DK 16227
MTHE264732 ncbi Moorella thermoacetica ATCC 390736
MSP409 Methylobacterium sp.7
MSP400668 ncbi Marinomonas sp. MWYL16
MLOT266835 ncbi Mesorhizobium loti MAFF3030997
MEXT419610 ncbi Methylobacterium extorquens PA16
MAER449447 ncbi Microcystis aeruginosa NIES-8436
LWEL386043 ncbi Listeria welshimeri serovar 6b str. SLCC53346
LSPH444177 ncbi Lysinibacillus sphaericus C3-416
LMON265669 ncbi Listeria monocytogenes 4b F23656
LMON169963 ncbi Listeria monocytogenes EGD-e6
LINN272626 ncbi Listeria innocua Clip112626
KPNE272620 ncbi Klebsiella pneumoniae pneumoniae MGH 785787
JSP375286 ncbi Janthinobacterium sp. Marseille6
HNEP81032 Hyphomonas neptunium6
HHAL349124 ncbi Halorhodospira halophila SL16
GVIO251221 ncbi Gloeobacter violaceus PCC 74216
GURA351605 ncbi Geobacter uraniireducens Rf46
GTHE420246 ncbi Geobacillus thermodenitrificans NG80-26
GSUL243231 ncbi Geobacter sulfurreducens PCA7
GOXY290633 ncbi Gluconobacter oxydans 621H6
GMET269799 ncbi Geobacter metallireducens GS-157
GKAU235909 ncbi Geobacillus kaustophilus HTA4266
GFOR411154 ncbi Gramella forsetii KT08036
FJOH376686 ncbi Flavobacterium johnsoniae UW1016
ESP42895 Enterobacter sp.7
EFER585054 ncbi Escherichia fergusonii ATCC 354696
ECOO157 ncbi Escherichia coli O157:H7 EDL9337
ECOL83334 Escherichia coli O157:H77
ECOL585397 ncbi Escherichia coli ED1a7
ECOL585057 ncbi Escherichia coli IAI397
ECOL585056 ncbi Escherichia coli UMN0267
ECOL585055 ncbi Escherichia coli 559897
ECOL585035 ncbi Escherichia coli S887
ECOL585034 ncbi Escherichia coli IAI17
ECOL481805 ncbi Escherichia coli ATCC 87397
ECOL469008 ncbi Escherichia coli BL21(DE3)7
ECOL439855 ncbi Escherichia coli SMS-3-57
ECOL413997 ncbi Escherichia coli B str. REL6067
ECOL409438 ncbi Escherichia coli SE117
ECOL405955 ncbi Escherichia coli APEC O16
ECOL364106 ncbi Escherichia coli UTI897
ECOL362663 ncbi Escherichia coli 5367
ECOL331111 ncbi Escherichia coli E24377A7
ECOL316407 ncbi Escherichia coli K-12 substr. W31107
ECAR218491 ncbi Pectobacterium atrosepticum SCRI10436
DSP255470 ncbi Dehalococcoides sp. CBDB16
DSP216389 ncbi Dehalococcoides sp. BAV16
DRED349161 ncbi Desulfotomaculum reducens MI-17
DRAD243230 ncbi Deinococcus radiodurans R16
DHAF138119 ncbi Desulfitobacterium hafniense Y516
DGEO319795 ncbi Deinococcus geothermalis DSM 113006
DETH243164 ncbi Dehalococcoides ethenogenes 1956
CVIO243365 ncbi Chromobacterium violaceum ATCC 124726
CSP78 Caulobacter sp.6
CSAL290398 ncbi Chromohalobacter salexigens DSM 30437
CPER289380 ncbi Clostridium perfringens SM1016
CPER195103 ncbi Clostridium perfringens ATCC 131246
CPER195102 ncbi Clostridium perfringens 136
CNOV386415 ncbi Clostridium novyi NT6
CJAP155077 Cellvibrio japonicus7
CHYD246194 ncbi Carboxydothermus hydrogenoformans Z-29017
CHUT269798 ncbi Cytophaga hutchinsonii ATCC 334066
CDES477974 ncbi Candidatus Desulforudis audaxviator MP104C7
CCHL340177 ncbi Chlorobium chlorochromatii CaD36
CBOT536232 ncbi Clostridium botulinum A2 str. Kyoto7
CBOT515621 ncbi Clostridium botulinum Ba4 str. 6577
CBOT498213 ncbi Clostridium botulinum B1 str. Okra6
CBOT441772 ncbi Clostridium botulinum F str. Langeland6
CBOT441771 ncbi Clostridium botulinum A str. Hall6
CBOT441770 ncbi Clostridium botulinum A str. ATCC 193976
CBOT36826 Clostridium botulinum A6
CBEI290402 ncbi Clostridium beijerinckii NCIMB 80526
CAULO ncbi Caulobacter crescentus CB156
CACE272562 ncbi Clostridium acetobutylicum ATCC 8247
BWEI315730 ncbi Bacillus weihenstephanensis KBAB46
BVIE269482 ncbi Burkholderia vietnamiensis G46
BTHU412694 ncbi Bacillus thuringiensis Al Hakam6
BTHU281309 ncbi Bacillus thuringiensis serovar konkukian str. 97-276
BTHA271848 ncbi Burkholderia thailandensis E2646
BSUB ncbi Bacillus subtilis subtilis 1686
BSP376 Bradyrhizobium sp.7
BSP36773 Burkholderia sp.7
BPUM315750 ncbi Bacillus pumilus SAFR-0326
BPSE320373 ncbi Burkholderia pseudomallei 6686
BPSE320372 ncbi Burkholderia pseudomallei 1710b6
BPSE272560 ncbi Burkholderia pseudomallei K962436
BPER257313 ncbi Bordetella pertussis Tohama I6
BPAR257311 ncbi Bordetella parapertussis 128227
BMAL320389 ncbi Burkholderia mallei NCTC 102476
BMAL320388 ncbi Burkholderia mallei SAVP16
BMAL243160 ncbi Burkholderia mallei ATCC 233446
BLIC279010 ncbi Bacillus licheniformis ATCC 145806
BJAP224911 ncbi Bradyrhizobium japonicum USDA 1107
BHAL272558 ncbi Bacillus halodurans C-1257
BCLA66692 ncbi Bacillus clausii KSM-K167
BCER572264 ncbi Bacillus cereus 03BB1026
BCER405917 Bacillus cereus W6
BCER288681 ncbi Bacillus cereus E33L6
BCER226900 ncbi Bacillus cereus ATCC 145796
BCEN331272 ncbi Burkholderia cenocepacia HI24247
BCEN331271 ncbi Burkholderia cenocepacia AU 10547
BCAN483179 ncbi Brucella canis ATCC 233656
BBRO257310 ncbi Bordetella bronchiseptica RB507
BANT592021 ncbi Bacillus anthracis A02486
BANT568206 ncbi Bacillus anthracis CDC 6846
BANT261594 ncbi Bacillus anthracis Ames Ancestor6
BANT260799 ncbi Bacillus anthracis Sterne6
BAMY326423 ncbi Bacillus amyloliquefaciens FZB426
BAMB398577 ncbi Burkholderia ambifaria MC40-66
BAMB339670 ncbi Burkholderia ambifaria AMMD6
ASP62928 ncbi Azoarcus sp. BH726
ASP232721 ncbi Acidovorax sp. JS426
ASAL382245 ncbi Aeromonas salmonicida salmonicida A4496
AMAR329726 ncbi Acaryochloris marina MBIC110176
ADEH290397 ncbi Anaeromyxobacter dehalogenans 2CP-C6
ACRY349163 ncbi Acidiphilium cryptum JF-57
ACAU438753 ncbi Azorhizobium caulinodans ORS 5717
ABAC204669 ncbi Candidatus Koribacter versatilis Ellin3457
AAVE397945 ncbi Acidovorax citrulli AAC00-17


Names of the homologs of the genes in the group in each of these orgs
  G7880   G7440   EG50003   EG12606   EG12019   EG11318   EG11317   
YPSE349747 YPSIP31758_0935YPSIP31758_1579YPSIP31758_1580YPSIP31758_1693YPSIP31758_1578YPSIP31758_1577
YPSE273123 YPTB3083YPTB2470YPTB2469YPTB2357YPTB2471YPTB2472
YPES386656 YPDSF_0675YPDSF_1847YPDSF_1846YPDSF_1724YPDSF_1848YPDSF_1849
YPES377628 YPN_3041YPN_2029YPN_2028YPN_1906YPN_2030YPN_2031
YPES360102 YPA_0431YPA_1925YPA_1924YPA_1794YPA_1926YPA_1927
YPES349746 YPANGOLA_A3369YPANGOLA_A3498YPANGOLA_A3497YPANGOLA_A2643YPANGOLA_A3499YPANGOLA_A3500
YPES214092 YPO0839YPO1600YPO1601YPO1724YPO1599YPO1598
YPES187410 Y3224Y1759Y1760Y1886Y1758Y1757
XCAM487884 XCC-B100_3340XCC-B100_0169XCC-B100_3339XCC-B100_3338XCC-B100_3340XCC-B100_3341
XCAM316273 XCAORF_1263XCAORF_4387XCAORF_1219XCAORF_1220XCAORF_1218XCAORF_1217
XCAM314565 XC_3227XC_0161XC_3226XC_3225XC_3227XC_3228
XCAM190485 XCC1057XCC0152XCC1019XCC1020XCC1018XCC1017
XAXO190486 XAC1160XAC0169XAC1128XAC1129XAC3738XAC1127XAC1126
XAUT78245 XAUT_2437XAUT_3132XAUT_3133XAUT_2759XAUT_3115XAUT_3116
VVUL216895 VV2_0914VV1_3008VV1_3006VV2_0914VV1_3009VV1_3010
VVUL196600 VVA1401VV1276VV1277VVA1401VV1275VV1274
VPAR223926 VPA0077VP2053VP2052VP0882VP2054VP2055
VFIS312309 VFA0997VF1739VF1738VF0859VF1740VF1741
TTEN273068 TTE1472TTE1472TTE1471TTE1470TTE1472TTE1472TTE1473
TSP1755 TETH514_1723TETH514_1723TETH514_1722TETH514_1721TETH514_1723TETH514_1723TETH514_1724
TPSE340099 TETH39_1287TETH39_1287TETH39_1286TETH39_1285TETH39_1287TETH39_1287TETH39_1288
TDEN292415 TBD_1549TBD_1548TBD_1547TBD_0924TBD_1549TBD_1550
STYP99287 STM1675STM3017STM1196STM1197STM2171STM1195STM1194
STHE292459 STH577STH2303STH1452STH960STH1451STH1451STH1450
SSON300269 SSO_4429SSO_3002SSO_1114SSO_1115SSO_2194SSO_1113SSO_1112
SSAP342451 SSP0414SSP1537SSP1797SSP1538SSP1538SSP1539
SRUB309807 SRU_0045SRU_0045SRU_2754SRU_2753SRU_0045SRU_0043
SPRO399741 SPRO_4437SPRO_2462SPRO_1907SPRO_1908SPRO_3909SPRO_1906SPRO_1905
SMEL266834 SMB20456SMB21348SMC00573SMC00574SMC00572SMC00571
SMED366394 SMED_3675SMED_6315SMED_0746SMED_0747SMED_6315SMED_0745SMED_0744
SHIGELLA YJGIKDUDACPPFABFFABGFABD
SHAE279808 SH1683SH1682SH1972SH1683SH1683SH1684
SFUM335543 SFUM_1374SFUM_3460SFUM_1375SFUM_1374SFUM_1374SFUM_3285
SFLE373384 SFV_4245SFV_2920SFV_1114SFV_1115SFV_1113SFV_1112
SFLE198214 AAN45659.1AAN44338.1AAN42717.1AAN42718.1AAN42716.1AAN42715.1
SEPI176280 SE_0906SE_0907SE_0678SE_0906SE_0906SE_0905
SEPI176279 SERP0797SERP0798SERP0568SERP0797SERP0797SERP0796
SENT454169 SEHA_C1860SEHA_C3233SEHA_C1310SEHA_C1311SEHA_C2405SEHA_C1309SEHA_C1308
SENT321314 SCH_1669SCH_2956SCH_1144SCH_1145SCH_2187SCH_1143SCH_1142
SENT295319 SPA1209SPA2884SPA1655SPA1654SPA0680SPA1656SPA1657
SENT220341 STY1389STY3162STY1235STY1236STY2401STY1234STY1233
SENT209261 T1579T2927T1724T1723T0684T1725T1726
SELO269084 SYC0845_CSYC0985_CSYC0984_CSYC0030_DSYC0845_CSYC0101_C
SDYS300267 SDY_4267SDY_2976SDY_2056SDY_2055SDY_2151SDY_2057SDY_2058
SDEG203122 SDE_1283SDE_1630SDE_1631SDE_0949SDE_1629SDE_1628
SBOY300268 SBO_4198SBO_2734SBO_1969SBO_1968SBO_1007SBO_1970SBO_1971
SBAL402882 SHEW185_4227SHEW185_1717SHEW185_1718SHEW185_0326SHEW185_1716SHEW185_1715
SALA317655 SALA_0085SALA_3035SALA_0280SALA_0281SALA_1896SALA_1897
RSPH272943 RSP_4004RSP_0481RSP_2463RSP_2464RSP_2461RSP_2682
RSP357808 ROSERS_0498ROSERS_0984ROSERS_4603ROSERS_1362ROSERS_0987ROSERS_3469
RSOL267608 RSP0305RSP0947RSC1053RSC1054RSP1059RSC1052RSC1051
RRUB269796 RRU_A2747RRU_A0417RRU_A0418RRU_A2747RRU_A0416RRU_A0415
RPAL316058 RPB_1150RPB_2468RPB_2469RPB_3242RPB_2467RPB_2466
RPAL316055 RPE_3648RPE_3305RPE_3304RPE_2271RPE_3306RPE_3307
RPAL258594 RPA1853RPA3073RPA3072RPA2160RPA3074RPA3075
RMET266264 RMET_3874RMET_5878RMET_2427RMET_2426RMET_2428RMET_2429
RLEG216596 RL4027PRL110529RL1559RL1560RL1193RL1558RL1557
REUT264198 REUT_B3486REUT_C6036REUT_A2262REUT_A2261REUT_B5464REUT_A2263REUT_A2264
RETL347834 RHE_CH03352RHE_PE00399RHE_CH01444RHE_CH01445RHE_CH01443RHE_CH01442
RCAS383372 RCAS_3851RCAS_1253RCAS_3256RCAS_0379RCAS_3569RCAS_3253RCAS_1491
PSYR223283 PSPTO_2097PSPTO_3831PSPTO_3830PSPTO_2492PSPTO_3832PSPTO_3833
PSYR205918 PSYR_1892PSYR_1648PSYR_1649PSYR_2297PSYR_1647PSYR_1646
PSTU379731 PST_3895PST_2621PST_2620PST_3895PST_2622PST_2623
PSP312153 PNUC_0400PNUC_0400PNUC_0401PNUC_0402PNUC_1540PNUC_0400PNUC_0399
PSP296591 BPRO_4205BPRO_3524BPRO_3646BPRO_3645BPRO_0239BPRO_3647BPRO_3648
PPUT76869 PPUTGB1_1428PPUTGB1_1491PPUTGB1_1492PPUTGB1_1428PPUTGB1_1490PPUTGB1_1489
PPUT351746 PPUT_3860PPUT_3799PPUT_3798PPUT_3860PPUT_3800PPUT_3801
PPUT160488 PP_1852PP_1915PP_1916PP_1852PP_1914PP_1913
PPRO298386 PBPRB0149PBPRA1196PBPRA1197PBPRB1737PBPRA1195PBPRA1194
PMEN399739 PMEN_1509PMEN_1629PMEN_1630PMEN_1509PMEN_1628PMEN_1627
PMAR74547 PMT1333PMT1333PMT1955PMT1956PMT1333PMT1333
PMAR59920 PMN2A_1785PMN2A_1785PMN2A_1185PMN2A_1186PMN2A_1785PMN2A_1785
PMAR167555 NATL1_05081NATL1_05081NATL1_20601NATL1_20611NATL1_05081NATL1_05081
PFLU216595 PFLU4646PFLU4704PFLU4703PFLU2089PFLU4705PFLU4706
PFLU205922 PFL_1753PFL_4156PFL_4155PFL_2695PFL_4157PFL_4158
PCAR338963 PCAR_1438PCAR_1439PCAR_1440PCAR_2667PCAR_1438PCAR_1437
PATL342610 PATL_2552PATL_2121PATL_2120PATL_2140PATL_2122PATL_2123
OIHE221109 OB1524OB2814OB1525OB1205OB1524OB1524OB1523
OANT439375 OANT_2226OANT_3576OANT_0572OANT_0573OANT_3576OANT_0571OANT_0570
MXAN246197 MXAN_5208MXAN_4770MXAN_4769MXAN_4768MXAN_4770MXAN_4770MXAN_4771
MTHE264732 MOTH_0948MOTH_0949MOTH_0950MOTH_0948MOTH_0948MOTH_0947
MSP409 M446_1247M446_1709M446_3198M446_3197M446_1734M446_3199M446_3200
MSP400668 MMWYL1_0778MMWYL1_2133MMWYL1_2134MMWYL1_2434MMWYL1_2132MMWYL1_2131
MLOT266835 MLL0534MLL4054MSR7851MLR7852MLR2400MLR7850MLR7849
MEXT419610 MEXT_3419MEXT_0558MEXT_0559MEXT_1352MEXT_0557MEXT_0556
MAER449447 MAE_33900MAE_33900MAE_14950MAE_14960MAE_33900MAE_33900
LWEL386043 LWE1826LWE1825LWE2218LWE1826LWE1826LWE1827
LSPH444177 BSPH_3231BSPH_1520BSPH_1214BSPH_1519BSPH_1519BSPH_1517
LMON265669 LMOF2365_1835LMOF2365_1834LMOF2365_2234LMOF2365_1835LMOF2365_1835LMOF2365_1836
LMON169963 LMO1807LMO1806LMO2201LMO1807LMO1807LMO1808
LINN272626 LIN1921LIN1920LIN2304LIN1921LIN1921LIN1922
KPNE272620 GKPORF_B5041GKPORF_B2608GKPORF_B0005GKPORF_B0006GKPORF_B0255GKPORF_B0004GKPORF_B0003
JSP375286 MMA_1860MMA_1359MMA_1360MMA_1860MMA_1358MMA_1357
HNEP81032 HNE_1036HNE_2157HNE_2156HNE_1957HNE_2158HNE_2160
HHAL349124 HHAL_1233HHAL_1233HHAL_1232HHAL_0003HHAL_1233HHAL_1234
GVIO251221 GLR1421GLR2311GLL4014GLL1114GLR3506GLL2145
GURA351605 GURA_1877GURA_1878GURA_1879GURA_1877GURA_1877GURA_1876
GTHE420246 GTNG_0891GTNG_1044GTNG_0685GTNG_1043GTNG_1043GTNG_1042
GSUL243231 GSU_1603GSU_1603GSU_1604GSU_1605GSU_1603GSU_1603GSU_1602
GOXY290633 GOX0525GOX2187GOX2041GOX2042GOX2040GOX2039
GMET269799 GMET_1694GMET_1601GMET_1602GMET_1603GMET_2194GMET_1601GMET_1600
GKAU235909 GK1029GK1191GK0805GK1190GK1190GK1189
GFOR411154 GFO_1767GFO_1767GFO_3382GFO_3383GFO_1767GFO_0276
FJOH376686 FJOH_4444FJOH_4263FJOH_1137FJOH_1138FJOH_2889FJOH_1730
ESP42895 ENT638_1133ENT638_3295ENT638_1609ENT638_1610ENT638_2737ENT638_1608ENT638_1607
EFER585054 EFER_1834EFER_1833EFER_1832EFER_2224EFER_1834EFER_1835
ECOO157 YJGIYGCWACPPFABFYOHFFABGFABD
ECOL83334 ECS5226ECS3630ECS1472ECS1473ECS3024ECS1471ECS1470
ECOL585397 ECED1_1236ECED1_3222ECED1_1237ECED1_1238ECED1_2583ECED1_1236ECED1_1235
ECOL585057 ECIAI39_2068ECIAI39_2955ECIAI39_2067ECIAI39_2066ECIAI39_0859ECIAI39_2068ECIAI39_2069
ECOL585056 ECUMN_4780ECUMN_3101ECUMN_1269ECUMN_1270ECUMN_2471ECUMN_1268ECUMN_1267
ECOL585055 EC55989_4807EC55989_3047EC55989_1206EC55989_1207EC55989_2388EC55989_1205EC55989_1204
ECOL585035 ECS88_4837ECS88_3038ECS88_1108ECS88_1109ECS88_2283ECS88_1107ECS88_1106
ECOL585034 ECIAI1_4479ECIAI1_2878ECIAI1_1129ECIAI1_1130ECIAI1_2215ECIAI1_1128ECIAI1_1127
ECOL481805 ECOLC_3763ECOLC_0939ECOLC_2507ECOLC_2506ECOLC_1510ECOLC_2508ECOLC_2509
ECOL469008 ECBD_3786ECBD_0956ECBD_2507ECBD_2506ECBD_1521ECBD_2508ECBD_2509
ECOL439855 ECSMS35_4729ECSMS35_2902ECSMS35_2033ECSMS35_2032ECSMS35_0906ECSMS35_2034ECSMS35_2035
ECOL413997 ECB_04116ECB_02618ECB_01090ECB_01091ECB_02067ECB_01089ECB_01088
ECOL409438 ECSE_4555ECSE_3029ECSE_1158ECSE_1159ECSE_2405ECSE_1157ECSE_1156
ECOL405955 APECO1_174APECO1_3759APECO1_176APECO1_4412APECO1_174APECO1_173
ECOL364106 UTI89_C1218UTI89_C3137UTI89_C1220UTI89_C1221UTI89_C2411UTI89_C1218UTI89_C1217
ECOL362663 ECP_1085ECP_2747ECP_1086ECP_1087ECP_2176ECP_1085ECP_1084
ECOL331111 ECE24377A_4821ECE24377A_3075ECE24377A_1215ECE24377A_1216ECE24377A_2427ECE24377A_1214ECE24377A_1213
ECOL316407 ECK4243:JW4207:B4249ECK2768:JW5443:B2774ECK1080:JW1080:B1094ECK1081:JW1081:B1095ECK2130:JW2125:B2137ECK1079:JW1079:B1093ECK1078:JW1078:B1092
ECAR218491 ECA2401ECA1798ECA1799ECA2401ECA1797ECA1796
DSP255470 CBDBA1205CBDBA1208CBDBA921CBDBA689CBDBA1205CBDBA1204
DSP216389 DEHABAV1_1088DEHABAV1_1090DEHABAV1_0854DEHABAV1_0666DEHABAV1_1088DEHABAV1_1087
DRED349161 DRED_2072DRED_2072DRED_2071DRED_2070DRED_2072DRED_2072DRED_2073
DRAD243230 DR_1943DR_1942DR_1941DR_1943DR_1943DR_1945
DHAF138119 DSY2660DSY2659DSY2657DSY2660DSY2660DSY2661
DGEO319795 DGEO_0435DGEO_0436DGEO_0437DGEO_0435DGEO_0435DGEO_0434
DETH243164 DET_1277DET_1279DET_0963DET_0736DET_1277DET_1276
CVIO243365 CV_3414CV_3414CV_3413CV_3412CV_3414CV_3415
CSP78 CAUL_5117CAUL_1758CAUL_2519CAUL_2520CAUL_2518CAUL_2517
CSAL290398 CSAL_2371CSAL_1129CSAL_1602CSAL_1603CSAL_2613CSAL_1601CSAL_1600
CPER289380 CPR_0392CPR_1691CPR_1139CPR_1138CPR_1138CPR_1137
CPER195103 CPF_0396CPF_1973CPF_1327CPF_1326CPF_1326CPF_1325
CPER195102 CPE1070CPE1719CPE1071CPE1070CPE1070CPE1069
CNOV386415 NT01CX_0925NT01CX_2220NT01CX_0926NT01CX_0925NT01CX_0925NT01CX_0924
CJAP155077 CJA_2303CJA_0168CJA_1677CJA_1678CJA_2303CJA_1676CJA_1675
CHYD246194 CHY_1447CHY_1447CHY_1446CHY_1445CHY_1447CHY_1447CHY_1448
CHUT269798 CHU_1085CHU_1398CHU_1397CHU_1661CHU_1085CHU_2469
CDES477974 DAUD_0642DAUD_0642DAUD_0643DAUD_0644DAUD_0642DAUD_0642DAUD_0641
CCHL340177 CAG_1662CAG_1661CAG_1660CAG_1662CAG_1662CAG_1663
CBOT536232 CLM_4092CLM_0594CLM_2749CLM_4091CLM_0594CLM_4092CLM_4093
CBOT515621 CLJ_B3929CLJ_B3929CLJ_B2680CLJ_B3928CLJ_B3929CLJ_B3929CLJ_B3930
CBOT498213 CLD_0886CLD_0246CLD_2185CLD_0887CLD_0886CLD_0885
CBOT441772 CLI_3825CLI_0582CLI_2512CLI_3824CLI_3825CLI_3826
CBOT441771 CLC_3578CLC_3578CLC_2304CLC_3577CLC_3578CLC_3579
CBOT441770 CLB_3680CLB_3680CLB_2320CLB_3679CLB_3680CLB_3681
CBOT36826 CBO3600CBO3600CBO2455CBO3599CBO3600CBO3601
CBEI290402 CBEI_3904CBEI_0448CBEI_1072CBEI_2398CBEI_1071CBEI_0257
CAULO CC0511CC1492CC1677CC1678CC1675CC1674
CACE272562 CAC3574CAC0361CAC1747CAC3573CAC2626CAC3574CAC3575
BWEI315730 BCERKBAB4_3674BCERKBAB4_3673BCERKBAB4_1083BCERKBAB4_3674BCERKBAB4_3674BCERKBAB4_3675
BVIE269482 BCEP1808_1042BCEP1808_1043BCEP1808_1044BCEP1808_2360BCEP1808_1042BCEP1808_1041
BTHU412694 BALH_3482BALH_3481BALH_1037BALH_3482BALH_3482BALH_3483
BTHU281309 BT9727_3592BT9727_3591BT9727_1078BT9727_3592BT9727_3592BT9727_3593
BTHA271848 BTH_I1719BTH_II0349BTH_I1720BTH_I1721BTH_I1719BTH_I1718
BSUB BSU22140BSU15920BSU11340BSU15910BSU15910BSU15900
BSP376 BRADO1160BRADO3552BRADO3313BRADO3314BRADO1396BRADO3311BRADO3310
BSP36773 BCEP18194_A5711BCEP18194_A3725BCEP18194_A4236BCEP18194_A4237BCEP18194_B1406BCEP18194_A4235BCEP18194_A4234
BPUM315750 BPUM_3247BPUM_1491BPUM_1058BPUM_1490BPUM_1490BPUM_1489
BPSE320373 BURPS668_3449BURPS668_2789BURPS668_2788BURPS668_1263BURPS668_2790BURPS668_2791
BPSE320372 BURPS1710B_B0313BURPS1710B_A3152BURPS1710B_A3151BURPS1710B_A1488BURPS1710B_A3153BURPS1710B_A3154
BPSE272560 BPSS1256BPSL2439BPSL2438BPSL1186BPSL2440BPSL2441
BPER257313 BP2841BP0464BP2440BP2439BP2441BP2442
BPAR257311 BPP0988BPP4378BPP3304BPP3303BPP0576BPP3305BPP3306
BMAL320389 BMA10247_A1272BMA10247_1799BMA10247_1798BMA10247_0386BMA10247_1800BMA10247_1801
BMAL320388 BMASAVP1_0103BMASAVP1_A2476BMASAVP1_A2475BMASAVP1_A1103BMASAVP1_A2477BMASAVP1_A2478
BMAL243160 BMA_A1104BMA_0533BMA_0534BMA_1859BMA_0532BMA_0531
BLIC279010 BL02435BL02316BL03314BL02315BL02315BL02314
BJAP224911 BLR7566BLR5277BSR4084BLR4085BLL7185BLR4083BLR4082
BHAL272558 BH2491BH2167BH2490BH2882BH2491BH2491BH2492
BCLA66692 ABC2301ABC1041ABC2300ABC2546ABC2301ABC2301ABC2302
BCER572264 BCA_3951BCA_3950BCA_1218BCA_3951BCA_3951BCA_3952
BCER405917 BCE_3893BCE_3892BCE_1294BCE_3893BCE_3893BCE_3894
BCER288681 BCE33L3610BCE33L3609BCE33L1072BCE33L3610BCE33L3610BCE33L3611
BCER226900 BC_3849BC_3848BC_1174BC_3849BC_3849BC_3850
BCEN331272 BCEN2424_2385BCEN2424_0641BCEN2424_1124BCEN2424_1125BCEN2424_2275BCEN2424_1123BCEN2424_1122
BCEN331271 BCEN_1773BCEN_0158BCEN_0644BCEN_0645BCEN_1663BCEN_0643BCEN_0642
BCAN483179 BCAN_A1141BCAN_A0464BCAN_A0466BCAN_A2086BCAN_A0463BCAN_A0462
BBRO257310 BB1200BB4964BB3755BB3754BB0582BB3756BB3757
BANT592021 BAA_4013BAA_4012BAA_1262BAA_4013BAA_4013BAA_4014
BANT568206 BAMEG_0642BAMEG_0643BAMEG_3402BAMEG_0642BAMEG_0642BAMEG_0641
BANT261594 GBAA3989GBAA3988GBAA1185GBAA3989GBAA3989GBAA3990
BANT260799 BAS3702BAS3701BAS1096BAS3702BAS3702BAS3703
BAMY326423 RBAM_015740RBAM_015750RBAM_011340RBAM_015740RBAM_015740RBAM_015730
BAMB398577 BAMMC406_2294BAMMC406_1004BAMMC406_1005BAMMC406_5255BAMMC406_1003BAMMC406_1002
BAMB339670 BAMB_2430BAMB_1000BAMB_1001BAMB_2313BAMB_0999BAMB_0998
ASP62928 AZO1625AZO1625AZO1626AZO1627AZO1625AZO1624
ASP232721 AJS_2046AJS_3277AJS_3276AJS_2046AJS_3278AJS_3279
ASAL382245 ASA_0429ASA_2054ASA_2053ASA_2052ASA_2054ASA_2055
AMAR329726 AM1_5632AM1_5632AM1_5523AM1_5522AM1_5632AM1_5632
ADEH290397 ADEH_3141ADEH_2747ADEH_2746ADEH_2748ADEH_2748ADEH_2749
ACRY349163 ACRY_1692ACRY_1591ACRY_1527ACRY_1528ACRY_3136ACRY_1526ACRY_1525
ACAU438753 AZC_4570AZC_3334AZC_4314AZC_4315AZC_2050AZC_4313AZC_4312
ABAC204669 ACID345_3509ACID345_4309ACID345_4505ACID345_4506ACID345_3509ACID345_0265ACID345_4573
AAVE397945 AAVE_4486AAVE_2873AAVE_1186AAVE_1187AAVE_1089AAVE_1185AAVE_1184


Organism features enriched in list (features available for 187 out of the 199 orgs in the list)
Feature    Pvalue       Num occurrences in list  Total num occurrences  
Arrangment:Pairs 0.001330049112
Disease:Botulism 0.003272855
Disease:Bubonic_plague 0.001030566
Disease:Dysentery 0.001030566
Disease:Gastroenteritis 0.00091851013
Endospores:No 3.302e-1035211
Endospores:Yes 3.015e-93753
GC_Content_Range4:0-40 5.089e-840213
GC_Content_Range4:60-100 0.000035466145
GC_Content_Range7:30-40 4.623e-729166
GC_Content_Range7:50-60 0.001514147107
GC_Content_Range7:60-70 2.691e-665134
Genome_Size_Range5:0-2 5.999e-245155
Genome_Size_Range5:2-4 0.000098244197
Genome_Size_Range5:4-6 1.316e-22111184
Genome_Size_Range5:6-10 0.00011372747
Genome_Size_Range9:1-2 3.820e-185128
Genome_Size_Range9:2-3 0.000012920120
Genome_Size_Range9:4-5 4.334e-65096
Genome_Size_Range9:5-6 4.768e-156188
Genome_Size_Range9:6-8 0.00013122338
Gram_Stain:Gram_Neg 0.0010349123333
Habitat:Host-associated 1.422e-739206
Habitat:Multiple 5.823e-680178
Habitat:Specialized 0.0050989953
Habitat:Terrestrial 0.00002472131
Motility:No 1.376e-822151
Motility:Yes 1.299e-12125267
Optimal_temp.:25-30 0.00085661319
Oxygen_Req:Facultative 0.001175480201
Shape:Coccus 3.457e-7882
Shape:Rod 1.463e-18158347
Shape:Spiral 0.0001782234
Temp._range:Hyperthermophilic 0.0069542223
Temp._range:Mesophilic 0.0000634168473



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ORGANISMS CONTAINING AT MOST 1 GENES FROM THE GROUP:

Total number of orgs: 138
Effective number of orgs (counting one per cluster within 468 clusters): 124

Organism list
Homologs in each organism in the list
Features enriched in organism list


Follow (ncbi) link, when present, to find the set of organism features for each organism
Org ID  Org Name  # genes in group found in org  
WSUC273121 ncbi Wolinella succinogenes DSM 17401
WPIP955 Wolbachia pipientis1
UURE95667 Ureaplasma urealyticum serovar 130
UURE95664 Ureaplasma urealyticum serovar 100
UPAR505682 ncbi Ureaplasma parvum serovar 3 str. ATCC 278150
UMET351160 ncbi uncultured methanogenic archaeon RC-I0
TWHI218496 ncbi Tropheryma whipplei TW08/271
TWHI203267 ncbi Tropheryma whipplei Twist1
TVOL273116 ncbi Thermoplasma volcanium GSS10
TPEN368408 ncbi Thermofilum pendens Hrk 50
TPAL243276 ncbi Treponema pallidum pallidum Nichols0
TKOD69014 ncbi Thermococcus kodakarensis KOD10
TFUS269800 ncbi Thermobifida fusca YX1
TDEN243275 ncbi Treponema denticola ATCC 354050
STOK273063 ncbi Sulfolobus tokodaii 70
STHE322159 ncbi Streptococcus thermophilus LMD-91
STHE299768 ncbi Streptococcus thermophilus CNRZ10661
STHE264199 ncbi Streptococcus thermophilus LMG 183111
SSOL273057 ncbi Sulfolobus solfataricus P20
SMUT210007 ncbi Streptococcus mutans UA1591
SMAR399550 ncbi Staphylothermus marinus F10
SGOR29390 Streptococcus gordonii Challis1
SAGA205921 ncbi Streptococcus agalactiae A9091
SACI330779 ncbi Sulfolobus acidocaldarius DSM 6390
RSAL288705 ncbi Renibacterium salmoninarum ATCC 332091
PTOR263820 ncbi Picrophilus torridus DSM 97900
PMOB403833 ncbi Petrotoga mobilis SJ950
PISL384616 ncbi Pyrobaculum islandicum DSM 41840
PHOR70601 ncbi Pyrococcus horikoshii OT30
PFUR186497 ncbi Pyrococcus furiosus DSM 36380
PAST100379 Onion yellows phytoplasma0
PARS340102 ncbi Pyrobaculum arsenaticum DSM 135140
PAER178306 ncbi Pyrobaculum aerophilum IM20
PACN267747 ncbi Propionibacterium acnes KPA1712020
PABY272844 ncbi Pyrococcus abyssi GE50
OTSU357244 ncbi Orientia tsutsugamushi Boryong1
NSEN222891 ncbi Neorickettsia sennetsu Miyayama0
NPHA348780 ncbi Natronomonas pharaonis DSM 21600
MTHE349307 ncbi Methanosaeta thermophila PT0
MTHE187420 ncbi Methanothermobacter thermautotrophicus Delta H0
MTBCDC ncbi Mycobacterium tuberculosis CDC15511
MSYN262723 ncbi Mycoplasma synoviae 530
MSTA339860 ncbi Methanosphaera stadtmanae DSM 30910
MSED399549 ncbi Metallosphaera sedula DSM 53480
MPUL272635 ncbi Mycoplasma pulmonis UAB CTIP0
MPNE272634 ncbi Mycoplasma pneumoniae M1290
MPEN272633 ncbi Mycoplasma penetrans HF-20
MMYC272632 ncbi Mycoplasma mycoides mycoides SC str. PG10
MMOB267748 ncbi Mycoplasma mobile 163K0
MMAZ192952 ncbi Methanosarcina mazei Go10
MMAR444158 ncbi Methanococcus maripaludis C60
MMAR426368 ncbi Methanococcus maripaludis C70
MMAR402880 ncbi Methanococcus maripaludis C50
MMAR368407 ncbi Methanoculleus marisnigri JR11
MMAR267377 ncbi Methanococcus maripaludis S20
MLEP272631 ncbi Mycobacterium leprae TN1
MLAB410358 ncbi Methanocorpusculum labreanum Z0
MKAN190192 ncbi Methanopyrus kandleri AV190
MJAN243232 ncbi Methanocaldococcus jannaschii DSM 26610
MHYO295358 ncbi Mycoplasma hyopneumoniae 2320
MHYO262722 ncbi Mycoplasma hyopneumoniae 74480
MHYO262719 ncbi Mycoplasma hyopneumoniae J0
MGIL350054 ncbi Mycobacterium gilvum PYR-GCK1
MGEN243273 ncbi Mycoplasma genitalium G370
MFLO265311 ncbi Mesoplasma florum L10
MCAP340047 ncbi Mycoplasma capricolum capricolum ATCC 273430
MBUR259564 ncbi Methanococcoides burtonii DSM 62420
MBAR269797 ncbi Methanosarcina barkeri Fusaro1
MART243272 ncbi Mycoplasma arthritidis 158L3-10
MAEO419665 ncbi Methanococcus aeolicus Nankai-30
MACE188937 ncbi Methanosarcina acetivorans C2A1
MABS561007 ncbi Mycobacterium abscessus ATCC 199771
LXYL281090 ncbi Leifsonia xyli xyli CTCB071
LSAK314315 ncbi Lactobacillus sakei sakei 23K1
LREU557436 ncbi Lactobacillus reuteri DSM 200160
LPLA220668 ncbi Lactobacillus plantarum WCFS10
LMES203120 ncbi Leuconostoc mesenteroides mesenteroides ATCC 82931
LLAC272623 ncbi Lactococcus lactis lactis Il14031
LLAC272622 ncbi Lactococcus lactis cremoris SK111
LJOH257314 ncbi Lactobacillus johnsonii NCC 5330
LHEL405566 ncbi Lactobacillus helveticus DPC 45710
LGAS324831 ncbi Lactobacillus gasseri ATCC 333230
LDEL390333 ncbi Lactobacillus delbrueckii bulgaricus ATCC 118420
LDEL321956 ncbi Lactobacillus delbrueckii bulgaricus ATCC BAA-3650
LACI272621 ncbi Lactobacillus acidophilus NCFM1
IHOS453591 ncbi Ignicoccus hospitalis KIN4/I0
HWAL362976 ncbi Haloquadratum walsbyi DSM 167900
HSP64091 ncbi Halobacterium sp. NRC-10
HSAL478009 ncbi Halobacterium salinarum R10
HPYL85963 ncbi Helicobacter pylori J991
HPYL357544 ncbi Helicobacter pylori HPAG11
HPY ncbi Helicobacter pylori 266951
HMUK485914 ncbi Halomicrobium mukohataei DSM 122861
HMAR272569 ncbi Haloarcula marismortui ATCC 430490
HBUT415426 ncbi Hyperthermus butylicus DSM 54560
HACI382638 ncbi Helicobacter acinonychis Sheeba1
FSP106370 ncbi Frankia sp. CcI31
FNOD381764 ncbi Fervidobacterium nodosum Rt17-B11
FMAG334413 ncbi Finegoldia magna ATCC 293280
ERUM302409 ncbi Ehrlichia ruminantium Gardel1
ECHA205920 ncbi Ehrlichia chaffeensis Arkansas1
CSUL444179 ncbi Candidatus Sulcia muelleri GWSS1
CPNE182082 ncbi Chlamydophila pneumoniae TW-1831
CPNE138677 ncbi Chlamydophila pneumoniae J1381
CPNE115713 ncbi Chlamydophila pneumoniae CWL0291
CPNE115711 ncbi Chlamydophila pneumoniae AR391
CMIC443906 ncbi Clavibacter michiganensis michiganensis NCPPB 3821
CMIC31964 ncbi Clavibacter michiganensis sepedonicus1
CMET456442 ncbi Candidatus Methanoregula boonei 6A80
CKOR374847 ncbi Candidatus Korarchaeum cryptofilum OPF81
CJEJ407148 ncbi Campylobacter jejuni jejuni 811161
CJEJ360109 ncbi Campylobacter jejuni doylei 269.971
CJEJ354242 ncbi Campylobacter jejuni jejuni 81-1761
CJEJ195099 ncbi Campylobacter jejuni RM12211
CJEJ192222 ncbi Campylobacter jejuni jejuni NCTC 111681
CJEI306537 ncbi Corynebacterium jeikeium K4110
CHOM360107 ncbi Campylobacter hominis ATCC BAA-3811
CGLU196627 ncbi Corynebacterium glutamicum ATCC 130321
CFET360106 ncbi Campylobacter fetus fetus 82-401
CEFF196164 ncbi Corynebacterium efficiens YS-3141
CDIP257309 ncbi Corynebacterium diphtheriae NCTC 131290
CCUR360105 ncbi Campylobacter curvus 525.921
CCON360104 ncbi Campylobacter concisus 138261
BXEN266265 ncbi Burkholderia xenovorans LB4001
BTUR314724 ncbi Borrelia turicatae 91E1350
BLON206672 ncbi Bifidobacterium longum NCC27050
BHER314723 ncbi Borrelia hermsii DAH0
BGAR290434 ncbi Borrelia garinii PBi0
BBUR224326 ncbi Borrelia burgdorferi B310
BAPH372461 ncbi Buchnera aphidicola Cc (Cinara cedri)1
BAFZ390236 ncbi Borrelia afzelii PKo0
AYEL322098 ncbi Aster yellows witches-broom phytoplasma AYWB0
AURANTIMONAS Aurantimonas manganoxydans SI85-9A10
APHA212042 ncbi Anaplasma phagocytophilum HZ1
APER272557 ncbi Aeropyrum pernix K10
ANAE240017 Actinomyces oris MG10
ALAI441768 ncbi Acholeplasma laidlawii PG-8A1
AFUL224325 ncbi Archaeoglobus fulgidus DSM 43041


Names of the homologs of the genes in the group in each of these orgs
  G7880   G7440   EG50003   EG12606   EG12019   EG11318   EG11317   
WSUC273121 WS0630
WPIP955 WD_1194
UURE95667
UURE95664
UPAR505682
UMET351160
TWHI218496 TW0434
TWHI203267 TW313
TVOL273116
TPEN368408
TPAL243276
TKOD69014
TFUS269800 TFU_1224
TDEN243275
STOK273063
STHE322159 STER_0432
STHE299768 STR0386
STHE264199 STU0386
SSOL273057
SMUT210007 SMU_1741
SMAR399550
SGOR29390 SGO_1694
SAGA205921 SAK_0421
SACI330779
RSAL288705 RSAL33209_2098
PTOR263820
PMOB403833
PISL384616
PHOR70601
PFUR186497
PAST100379
PARS340102
PAER178306
PACN267747
PABY272844
OTSU357244 OTBS_0383
NSEN222891
NPHA348780
MTHE349307
MTHE187420
MTBCDC MT1530
MSYN262723
MSTA339860
MSED399549
MPUL272635
MPNE272634
MPEN272633
MMYC272632
MMOB267748
MMAZ192952
MMAR444158
MMAR426368
MMAR402880
MMAR368407 MEMAR_2033
MMAR267377
MLEP272631 ML1807
MLAB410358
MKAN190192
MJAN243232
MHYO295358
MHYO262722
MHYO262719
MGIL350054 MFLV_3658
MGEN243273
MFLO265311
MCAP340047
MBUR259564
MBAR269797 MBAR_A0777
MART243272
MAEO419665
MACE188937 MA0415
MABS561007 MAB_0827
LXYL281090 LXX11740
LSAK314315 LSA0816
LREU557436
LPLA220668
LMES203120 LEUM_0922
LLAC272623 L0184
LLAC272622 LACR_0823
LJOH257314
LHEL405566
LGAS324831
LDEL390333
LDEL321956
LACI272621 LBA1098
IHOS453591
HWAL362976
HSP64091
HSAL478009
HPYL85963 JHP0505
HPYL357544 HPAG1_0536
HPY HP0558
HMUK485914 HMUK_0123
HMAR272569
HBUT415426
HACI382638 HAC_0779
FSP106370 FRANCCI3_1897
FNOD381764 FNOD_0616
FMAG334413
ERUM302409 ERGA_CDS_02130
ECHA205920 ECH_0882
CSUL444179 SMGWSS_016
CPNE182082 CPB0304
CPNE138677 CPJ0295
CPNE115713 CPN0295
CPNE115711 CP_0463
CMIC443906 CMM_1722
CMIC31964 CMS1966
CMET456442
CKOR374847 KCR_0822
CJEJ407148 C8J_0417
CJEJ360109 JJD26997_1495
CJEJ354242 CJJ81176_0469
CJEJ195099 CJE_0494
CJEJ192222 CJ0442
CJEI306537
CHOM360107 CHAB381_0229
CGLU196627 CG2958
CFET360106 CFF8240_1363
CEFF196164 CE2778
CDIP257309
CCUR360105 CCV52592_1911
CCON360104 CCC13826_0560
BXEN266265 BXE_B2664
BTUR314724
BLON206672
BHER314723
BGAR290434
BBUR224326
BAPH372461 BCC_217
BAFZ390236
AYEL322098
AURANTIMONAS
APHA212042 APH_0930
APER272557
ANAE240017
ALAI441768 ACL_0463
AFUL224325 AF_1207


Organism features enriched in list (features available for 131 out of the 138 orgs in the list)
Feature    Pvalue       Num occurrences in list  Total num occurrences  
Arrangment:Singles 0.000159482286
Endospores:No 7.575e-1687211
Endospores:Yes 0.0000115153
GC_Content_Range4:0-40 8.049e-669213
GC_Content_Range4:60-100 0.000540719145
GC_Content_Range7:0-30 0.00007342247
GC_Content_Range7:30-40 0.009314347166
GC_Content_Range7:60-70 0.000247116134
Genome_Size_Range5:0-2 5.909e-2482155
Genome_Size_Range5:4-6 4.205e-158184
Genome_Size_Range5:6-10 0.0000546147
Genome_Size_Range9:0-1 6.142e-92027
Genome_Size_Range9:1-2 4.614e-1462128
Genome_Size_Range9:4-5 1.031e-7496
Genome_Size_Range9:5-6 7.914e-7488
Gram_Stain:Gram_Neg 4.555e-1044333
Habitat:Specialized 0.00367992053
Habitat:Terrestrial 0.0028333131
Motility:No 0.004217745151
Optimal_temp.:- 0.000531142257
Optimal_temp.:37 0.003805134106
Oxygen_Req:Aerobic 0.001142128185
Oxygen_Req:Anaerobic 0.000011740102
Oxygen_Req:Microaerophilic 0.00031921118
Pathogenic_in:Animal 0.0005652566
Salinity:Extreme_halophilic 0.006924357
Shape:Irregular_coccus 8.436e-91517
Shape:Rod 6.471e-1244347
Shape:Sphere 9.811e-91619
Shape:Spiral 2.006e-62034
Temp._range:Hyperthermophilic 9.943e-71623
Temp._range:Mesophilic 0.001018794473
Temp._range:Thermophilic 0.00797111435



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ORGANISMS ENRICHED FOR GROUP:

Total number of orgs: 5
Effective number of orgs (counting one per cluster within 468 clusters): 4

Organism list
Homologs in each organism in the list
Features enriched in organism list


Follow (ncbi) link, when present, to find the set of organism features for each organism
Org ID  Org Name    Pvalue       # genes in tgt genome found in org  # genes in group found in org  
PMAR59920 ncbi Prochlorococcus marinus NATL2A 0.00583415396
CDES477974 ncbi Candidatus Desulforudis audaxviator MP104C 0.00630959617
PMAR167555 ncbi Prochlorococcus marinus NATL1A 0.00657705506
DETH243164 ncbi Dehalococcoides ethenogenes 195 0.00847225746
DSP216389 ncbi Dehalococcoides sp. BAV1 0.00948075856


Names of the homologs of the genes in the group in each of these orgs
  G7880   G7440   EG50003   EG12606   EG12019   EG11318   EG11317   
PMAR59920 PMN2A_1785PMN2A_1785PMN2A_1185PMN2A_1186PMN2A_1785PMN2A_1785
CDES477974 DAUD_0642DAUD_0642DAUD_0643DAUD_0644DAUD_0642DAUD_0642DAUD_0641
PMAR167555 NATL1_05081NATL1_05081NATL1_20601NATL1_20611NATL1_05081NATL1_05081
DETH243164 DET_1277DET_1279DET_0963DET_0736DET_1277DET_1276
DSP216389 DEHABAV1_1088DEHABAV1_1090DEHABAV1_0854DEHABAV1_0666DEHABAV1_1088DEHABAV1_1087


Organism features enriched in list (features available for 5 out of the 5 orgs in the list)
Feature    Pvalue       Num occurrences in list  Total num occurrences  
Genome_Size_Range9:1-2 0.00879844128



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ORGANISMS DEPLETED FOR GROUP:




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PHYLOGENETIC PROFILE SIMILARITY WITH KNOWN PATHWAYS:

Pathways or complexes with absolute value of Pearson coefficient with respect to candidate larger than 0.4 are listed below
The candidate is assumed to exist in orgs listed in section List of organisms containing most genes from the group


Pathway or complex  # Orgs containing it  # of those orgs also containing candidate  Pearson Coeff  
GLUTAMINDEG-PWY (glutamine degradation I)1911210.4479
GALACTITOLCAT-PWY (galactitol degradation)73640.4355
PWY-6196 (serine racemization)102760.4040
SULFATE-CYS-PWY (superpathway of sulfate assimilation and cysteine biosynthesis)3651740.4013



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PAIRWISE GENOME CONTEXT SCORE MATRIX:

  G7440   EG50003   EG12606   EG12019   EG11318   EG11317   
G78800.9985060.998910.9986850.999070.9994130.99914
G74400.999170.9987960.9993910.9995430.999178
EG500030.999990.9992560.999990.999971
EG126060.9986090.9999520.999923
EG120190.9996170.99933
EG113180.999995
EG11317



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PAIRWISE BLAST SCORES:

  G7880   G7440   EG50003   EG12606   EG12019   EG11318   EG11317   
G78800.0f0----5.8e-23-
G7440-0.0f0-----
EG50003--0.0f0----
EG12606---0.0f0---
EG12019----0.0f0--
EG11318-----0.0f0-
EG11317------0.0f0



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PATHWAYS OR PROTEIN COMPLEX MATCHES IN TARGET ORG:

For each case, all genes involved in the pathway or complex are listed. For each gene we list: a tag indicating whether the gene is part of the candidate list or not, the average and the minimum scores of the gene to the candidate list, the gene name, and its product names.

- PWY-5973 (cis-vaccenate biosynthesis) (degree of match pw to cand: 0.600, degree of match cand to pw: 0.429, average score: 0.960)
  Genes in pathway or complex:
   *in cand* 0.9994 0.9986 EG12606 (fabF) 3-OXOACYL-ACP-SYNTHII-MONOMER (FabF)
   *in cand* 0.9998 0.9994 EG11318 (fabG) 3-OXOACYL-ACP-REDUCT-MONOMER (3-oxo-acyl-[acyl-carrier-protein] reductase)
             0.8031 0.1898 EG11284 (fabZ) FABZ-MONOMER (FabZ)
             0.7847 0.5173 EG10273 (fabA) FABA-MONOMER (FabA)
   *in cand* 0.9996 0.9989 EG50003 (acpP) TRANS-DELTA3-CIS-DELTA5-DODECENOYL-ACP (trans-Δ3-cis-Δ5-dodecenoyl-ACP)
  Genes in candidate but not in this pathway or complex:
   *in cand* 0.9996 0.9991 EG11317 (fabD) MALONYL-COA-ACP-TRANSACYL-MONOMER (malonyl-CoA-ACP transacylase)
   *in cand* 0.9993 0.9986 EG12019 (yohF) EG12019-MONOMER (predicted oxidoreductase with NAD(P)-binding Rossmann-fold domain)
   *in cand* 0.9992 0.9985 G7440 (ygcW) G7440-MONOMER (predicted deoxygluconate dehydrogenase)
   *in cand* 0.9991 0.9985 G7880 (yjgI) G7880-MONOMER (predicted oxidoreductase with NAD(P)-binding Rossmann-fold domain)

- PWY0-881 (superpathway of fatty acid biosynthesis I (E. coli)) (degree of match pw to cand: 0.308, degree of match cand to pw: 0.571, average score: 0.874)
  Genes in pathway or complex:
             0.9993 0.9984 EG10277 (fabH) FABH-MONOMER (FabH)
             0.8463 0.4973 EG10275 (accB) BCCP-BIOTIN (biotinylated biotin-carboxyl carrier protein)
             0.9046 0.6590 EG10276 (accC) BIOTIN-CARBOXYL-MONOMER (AccC)
             0.8956 0.5905 EG11647 (accA) CARBOXYL-TRANSFERASE-ALPHA-MONOMER (acetyl-CoA carboxyltransferase, α subunit)
             0.8973 0.7706 EG10217 (accD) CARBOXYL-TRANSFERASE-BETA-MONOMER (acetyl-CoA carboxyltransferase, β subunit)
   *in cand* 0.9996 0.9991 EG11317 (fabD) MALONYL-COA-ACP-TRANSACYL-MONOMER (malonyl-CoA-ACP transacylase)
   *in cand* 0.9994 0.9986 EG12606 (fabF) 3-OXOACYL-ACP-SYNTHII-MONOMER (FabF)
             0.9975 0.9935 EG10274 (fabB) FABB-MONOMER (FabB)
   *in cand* 0.9998 0.9994 EG11318 (fabG) 3-OXOACYL-ACP-REDUCT-MONOMER (3-oxo-acyl-[acyl-carrier-protein] reductase)
             0.8996 0.4828 EG11528 (fabI) ENOYL-ACP-REDUCT-NADH-MONOMER (enoyl-[acyl-carrier-protein] reductase)
             0.8031 0.1898 EG11284 (fabZ) FABZ-MONOMER (FabZ)
             0.7847 0.5173 EG10273 (fabA) FABA-MONOMER (FabA)
   *in cand* 0.9996 0.9989 EG50003 (acpP) TRANS-DELTA3-CIS-DELTA5-DODECENOYL-ACP (trans-Δ3-cis-Δ5-dodecenoyl-ACP)
  Genes in candidate but not in this pathway or complex:
   *in cand* 0.9993 0.9986 EG12019 (yohF) EG12019-MONOMER (predicted oxidoreductase with NAD(P)-binding Rossmann-fold domain)
   *in cand* 0.9992 0.9985 G7440 (ygcW) G7440-MONOMER (predicted deoxygluconate dehydrogenase)
   *in cand* 0.9991 0.9985 G7880 (yjgI) G7880-MONOMER (predicted oxidoreductase with NAD(P)-binding Rossmann-fold domain)

- FASYN-INITIAL-PWY (superpathway of fatty acid biosynthesis initiation (E. coli)) (degree of match pw to cand: 0.333, degree of match cand to pw: 0.429, average score: 0.877)
  Genes in pathway or complex:
   *in cand* 0.9996 0.9991 EG11317 (fabD) MALONYL-COA-ACP-TRANSACYL-MONOMER (malonyl-CoA-ACP transacylase)
             0.8463 0.4973 EG10275 (accB) BCCP-BIOTIN (biotinylated biotin-carboxyl carrier protein)
             0.9046 0.6590 EG10276 (accC) BIOTIN-CARBOXYL-MONOMER (AccC)
             0.8956 0.5905 EG11647 (accA) CARBOXYL-TRANSFERASE-ALPHA-MONOMER (acetyl-CoA carboxyltransferase, α subunit)
             0.8973 0.7706 EG10217 (accD) CARBOXYL-TRANSFERASE-BETA-MONOMER (acetyl-CoA carboxyltransferase, β subunit)
             0.9993 0.9984 EG10277 (fabH) FABH-MONOMER (FabH)
             0.9975 0.9935 EG10274 (fabB) FABB-MONOMER (FabB)
   *in cand* 0.9994 0.9986 EG12606 (fabF) 3-OXOACYL-ACP-SYNTHII-MONOMER (FabF)
   *in cand* 0.9996 0.9989 EG50003 (acpP) TRANS-DELTA3-CIS-DELTA5-DODECENOYL-ACP (trans-Δ3-cis-Δ5-dodecenoyl-ACP)
  Genes in candidate but not in this pathway or complex:
   *in cand* 0.9998 0.9994 EG11318 (fabG) 3-OXOACYL-ACP-REDUCT-MONOMER (3-oxo-acyl-[acyl-carrier-protein] reductase)
   *in cand* 0.9993 0.9986 EG12019 (yohF) EG12019-MONOMER (predicted oxidoreductase with NAD(P)-binding Rossmann-fold domain)
   *in cand* 0.9992 0.9985 G7440 (ygcW) G7440-MONOMER (predicted deoxygluconate dehydrogenase)
   *in cand* 0.9991 0.9985 G7880 (yjgI) G7880-MONOMER (predicted oxidoreductase with NAD(P)-binding Rossmann-fold domain)

- FASYN-ELONG-PWY (fatty acid elongation -- saturated) (degree of match pw to cand: 0.429, degree of match cand to pw: 0.429, average score: 0.919)
  Genes in pathway or complex:
             0.7847 0.5173 EG10273 (fabA) FABA-MONOMER (FabA)
             0.8031 0.1898 EG11284 (fabZ) FABZ-MONOMER (FabZ)
             0.8996 0.4828 EG11528 (fabI) ENOYL-ACP-REDUCT-NADH-MONOMER (enoyl-[acyl-carrier-protein] reductase)
   *in cand* 0.9998 0.9994 EG11318 (fabG) 3-OXOACYL-ACP-REDUCT-MONOMER (3-oxo-acyl-[acyl-carrier-protein] reductase)
             0.9975 0.9935 EG10274 (fabB) FABB-MONOMER (FabB)
   *in cand* 0.9994 0.9986 EG12606 (fabF) 3-OXOACYL-ACP-SYNTHII-MONOMER (FabF)
   *in cand* 0.9996 0.9989 EG50003 (acpP) TRANS-DELTA3-CIS-DELTA5-DODECENOYL-ACP (trans-Δ3-cis-Δ5-dodecenoyl-ACP)
  Genes in candidate but not in this pathway or complex:
   *in cand* 0.9996 0.9991 EG11317 (fabD) MALONYL-COA-ACP-TRANSACYL-MONOMER (malonyl-CoA-ACP transacylase)
   *in cand* 0.9993 0.9986 EG12019 (yohF) EG12019-MONOMER (predicted oxidoreductase with NAD(P)-binding Rossmann-fold domain)
   *in cand* 0.9992 0.9985 G7440 (ygcW) G7440-MONOMER (predicted deoxygluconate dehydrogenase)
   *in cand* 0.9991 0.9985 G7880 (yjgI) G7880-MONOMER (predicted oxidoreductase with NAD(P)-binding Rossmann-fold domain)

- PWY-6284 (superpathway of unsaturated fatty acids biosynthesis (E. coli)) (degree of match pw to cand: 0.375, degree of match cand to pw: 0.429, average score: 0.885)
  Genes in pathway or complex:
             0.6445 0.3312 EG11542 (tesA) THIOESTERI-MONOMER (TesA)
             0.9975 0.9935 EG10274 (fabB) FABB-MONOMER (FabB)
             0.8996 0.4828 EG11528 (fabI) ENOYL-ACP-REDUCT-NADH-MONOMER (enoyl-[acyl-carrier-protein] reductase)
             0.7847 0.5173 EG10273 (fabA) FABA-MONOMER (FabA)
             0.8031 0.1898 EG11284 (fabZ) FABZ-MONOMER (FabZ)
   *in cand* 0.9998 0.9994 EG11318 (fabG) 3-OXOACYL-ACP-REDUCT-MONOMER (3-oxo-acyl-[acyl-carrier-protein] reductase)
   *in cand* 0.9994 0.9986 EG12606 (fabF) 3-OXOACYL-ACP-SYNTHII-MONOMER (FabF)
   *in cand* 0.9996 0.9989 EG50003 (acpP) TRANS-DELTA3-CIS-DELTA5-DODECENOYL-ACP (trans-Δ3-cis-Δ5-dodecenoyl-ACP)
  Genes in candidate but not in this pathway or complex:
   *in cand* 0.9996 0.9991 EG11317 (fabD) MALONYL-COA-ACP-TRANSACYL-MONOMER (malonyl-CoA-ACP transacylase)
   *in cand* 0.9993 0.9986 EG12019 (yohF) EG12019-MONOMER (predicted oxidoreductase with NAD(P)-binding Rossmann-fold domain)
   *in cand* 0.9992 0.9985 G7440 (ygcW) G7440-MONOMER (predicted deoxygluconate dehydrogenase)
   *in cand* 0.9991 0.9985 G7880 (yjgI) G7880-MONOMER (predicted oxidoreductase with NAD(P)-binding Rossmann-fold domain)



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GENOME CONTEXT INFORMATION:

Each row corresponds to a replicon in an organism, each column to a gene in the candidate. The second column indicates whether the organims was included in the list used to compute the genome context scores or not. Some organisms are not included because they are phylogenetically too similar to others already in the list.
The number in the matrix indicate the position of the homolog of the gene in the replicon. All numbers are relative to the smaller one, which is assigned a position of zero. Two columns with the same number indicate that the two genes matched the same gene in that organism.

Genome browser links for gene clusters

The links below opens a genome browser BioCyc page for each cluster of genes in the target genome. These pages shows the central gene of the cluster in the target genome and its best homolog in the reference genomes, for the genomes that contain homologs for at least 75% of the genes in the group. Only one genome per phylogenetic cluster of organisms is shown, to keep the list smaller.

EG11317 EG11318 EG12606 EG50003 (centered at EG50003)
EG12019 (centered at EG12019)
G7440 (centered at G7440)
G7880 (centered at G7880)


ORG:REPLICON:CIRC?\GENE  IN REF LIST  G7880   G7440   EG50003   EG12606   EG12019   EG11318   EG11317   
234/623260/623413/623409/623276/623411/623407/623
AAEO224324:0:Tyes--5905915895890
AAUR290340:2:Tyes18432135--0--
AAVE397945:0:Tyes33381756939409291
ABAC204669:0:Tyes3269408042804281326904349
ABAU360910:0:Tyes--23-10
ABOR393595:0:Tyes--23-10
ABUT367737:0:Tyes--470469--0
ACAU438753:0:Tyes2559129622942295022932292
ACEL351607:0:Tyes0----0-
ACRY349163:7:Tyes----0--
ACRY349163:8:Tyes1696623-10
ADEH290397:0:Tyes395-10223
AEHR187272:0:Tyes--4224210423424
AFER243159:0:Tyes--10-23
AFUL224325:0:Tyes-0-----
AHYD196024:0:Tyes1-23-10
ALAI441768:0:Tyes0------
AMAR234826:0:Tyes---170--0
AMAR329726:9:Tyes11111110111111-
AMET293826:0:Tyes-0-1810181218121813
AORE350688:0:Tyes-1-3110
APHA212042:0:Tyes---0---
APLE416269:0:Tyes171-0--171172
APLE434271:0:Tno187-0--187188
ASAL382245:5:Tyes0157015691568-15701571
ASP1667:3:Tyes0340-----
ASP232721:2:Tyes0-11941193011951196
ASP62928:0:Tyes1123-10
ASP62977:0:Tyes--2--10
ASP76114:2:Tyes1-23-10
AVAR240292:3:Tyes-19041788178701904-
BABO262698:1:Tno--24147810
BAMB339670:3:Tno1473-23135310
BAMB398577:2:Tno----0--
BAMB398577:3:Tno1315-23-10
BAMY326423:0:Tyes-4404410440440439
BANT260799:0:Tno-258525840258525852586
BANT261594:2:Tno-255625550255625562557
BANT568206:2:Tyes-122736110
BANT592021:2:Tno-272527240272527252726
BAPH198804:0:Tyes--2--10
BAPH372461:0:Tyes-----0-
BBAC264462:0:Tyes--10-23
BBAC360095:0:Tyes--23-10
BBRO257310:0:Tyes615442531983197031993200
BCAN483179:1:Tno661-24157210
BCEN331271:2:Tno163904954961528494493
BCEN331272:3:Tyes174104824831632481480
BCER226900:1:Tyes-261326120261326132614
BCER288681:0:Tno-252025190252025202521
BCER315749:1:Tyes--15120151315131514
BCER405917:1:Tyes-244424430244424442445
BCER572264:1:Tno-270327020270327032704
BCIC186490:0:Tyes--0--12
BCLA66692:0:Tyes1277012761533127712771278
BFRA272559:1:Tyes-09594--2177
BFRA295405:0:Tno-0148147--2207
BHAL272558:0:Tyes3240323727324324325
BHEN283166:0:Tyes--23-10
BJAP224911:0:Fyes3511120823312810
BLIC279010:0:Tyes-25145650564564563
BMAL243160:0:Tno0------
BMAL243160:1:Tno--23115810
BMAL320388:0:Tno0------
BMAL320388:1:Tno--13391338013401341
BMAL320389:0:Tyes0------
BMAL320389:1:Tyes--13801379013811382
BMEL224914:1:Tno--14841482014861487
BMEL359391:1:Tno--24142710
BOVI236:1:Tyes--23133710
BPAR257311:0:Tno385363425832582025842585
BPER257313:0:Tyes2146017761775-17771778
BPET94624:0:Tyes0-10241025-10231022
BPSE272560:0:Tyes0------
BPSE272560:1:Tyes--12591258012601261
BPSE320372:0:Tno0------
BPSE320372:1:Tno--15541553015551556
BPSE320373:1:Tno2100-14631462014641465
BPUM315750:0:Tyes-21894330432432431
BQUI283165:0:Tyes--23-10
BSP107806:2:Tyes--1--0-
BSP36773:1:Tyes----0--
BSP36773:2:Tyes20270521522-520519
BSP376:0:Tyes022682048204922620462045
BSUB:0:Tyes-11464990498498497
BSUI204722:1:Tyes--24152810
BSUI470137:1:Tno--24135510
BTHA271848:0:Tno-0-----
BTHA271848:1:Tno1-23-10
BTHE226186:0:Tyes-249926262625-30420
BTHU281309:1:Tno-249724960249724972498
BTHU412694:1:Tno-231823170231823182319
BTRI382640:1:Tyes--23-10
BVIE269482:7:Tyes1-23130710
BWEI315730:4:Tyes-251525140251525152516
BXEN266265:1:Tyes0------
CABO218497:0:Tyes--1--0-
CACE272562:1:Tyes3213013803212224632133214
CAULO:0:Tyes0100111871188-11851184
CBEI290402:0:Tyes3573189-80921108080
CBLO203907:0:Tyes--0--12
CBLO291272:0:Tno--0--12
CBOT36826:1:Tno1136113601135-11361137
CBOT441770:0:Tyes1282128201281-12821283
CBOT441771:0:Tno1176117601175-11761177
CBOT441772:1:Tno3096018923095-30963097
CBOT498213:1:Tno3088018483087-30883089
CBOT508765:1:Tyes00-100-
CBOT515621:2:Tyes1175117501174117511751176
CBOT536232:0:Tno3344020903343033443345
CBUR227377:1:Tyes--23-10
CBUR360115:1:Tno--23-10
CBUR434922:2:Tno--10-23
CCAV227941:1:Tyes--2--10
CCHL340177:0:Tyes-210223
CCON360104:2:Tyes---0---
CCUR360105:0:Tyes---0---
CDES477974:0:Tyes1123110
CDIF272563:1:Tyes-1419-3110
CEFF196164:0:Fyes0------
CFEL264202:1:Tyes--0--1-
CFET360106:0:Tyes---0---
CGLU196627:0:Tyes----0--
CHOM360107:1:Tyes---0---
CHUT269798:0:Tyes-030730656901363
CHYD246194:0:Tyes2210223
CJAP155077:0:Tyes2077014651466207714641463
CJEJ192222:0:Tyes---0---
CJEJ195099:0:Tno---0---
CJEJ354242:2:Tyes---0---
CJEJ360109:0:Tyes---0---
CJEJ407148:0:Tno---0---
CKLU431943:1:Tyes-657126110-1598
CKOR374847:0:Tyes----0--
CMAQ397948:0:Tyes00--0--
CMIC31964:2:Tyes0------
CMIC443906:2:Tyes0------
CMUR243161:1:Tyes--0--1-
CNOV386415:0:Tyes-112722110
CPEL335992:0:Tyes-1522---0
CPER195102:1:Tyes-16512110
CPER195103:0:Tno-01555921920920919
CPER289380:3:Tyes-01282738737737736
CPHY357809:0:Tyes-642-2-10
CPNE115711:1:Tyes--0----
CPNE115713:0:Tno--0----
CPNE138677:0:Tno--0----
CPNE182082:0:Tno--0----
CPRO264201:0:Fyes-0---0-
CPSY167879:0:Tyes1731-23-10
CRUT413404:0:Tyes--01-325326
CSAL290398:0:Tyes127004874881513486485
CSP501479:8:Fyes0-1021599-10201019
CSP78:1:Tyes0------
CSP78:2:Tyes-0762763-761760
CSUL444179:0:Tyes--0----
CTEP194439:0:Tyes-123-10
CTET212717:0:Tyes-615-261510
CTRA471472:0:Tyes--0--1-
CTRA471473:0:Tno--0--1-
CVES412965:0:Tyes--01-289290
CVIO243365:0:Tyes2210-23
DARO159087:0:Tyes--23-10
DDES207559:0:Tyes--1200-
DETH243164:0:Tyes-5175192150517516
DGEO319795:1:Tyes1-23110
DHAF138119:0:Tyes-320334
DNOD246195:0:Tyes--23-10
DOLE96561:0:Tyes110-11-
DPSY177439:2:Tyes-21022-
DRAD243230:3:Tyes2-10224
DRED349161:0:Tyes2210223
DSHI398580:5:Tyes--10-23
DSP216389:0:Tyes-4394411980439438
DSP255470:0:Tno-4514532120451450
DVUL882:1:Tyes--1022-
ECAN269484:0:Tyes---0-158-
ECAR218491:0:Tyes-6032360310
ECHA205920:0:Tyes---0---
ECOL199310:0:Tno-1938231285-0
ECOL316407:0:Tno3149168723106010
ECOL331111:6:Tno3464178523117110
ECOL362663:0:Tno1166523109010
ECOL364106:1:Tno1191634119310
ECOL405955:2:Tyes11759-3108210
ECOL409438:6:Tyes3476190323126210
ECOL413997:0:Tno305615302396610
ECOL439855:4:Tno3696194711031102011041105
ECOL469008:0:Tno281101536153557615371538
ECOL481805:0:Tno282901566156558215671568
ECOL585034:0:Tno3276171923107110
ECOL585035:0:Tno3583185723112310
ECOL585055:0:Tno3537182223116910
ECOL585056:2:Tno3497183423120210
ECOL585057:0:Tno1195208711941193011951196
ECOL585397:0:Tno1191523127910
ECOL83334:0:Tno3858220923158310
ECOLI:0:Tno3228173123108410
ECOO157:0:Tno3770215423152210
EFAE226185:3:Tyes-1857-01969-2438
EFER585054:1:Tyes2-1038823
ELIT314225:0:Tyes1680-01-680681
ERUM254945:0:Tyes---0-186-
ERUM302409:0:Tno---0---
ESP42895:1:Tyes021904904911616489488
FALN326424:0:Tyes157-1483-0--
FJOH376686:0:Tyes3327314901-1782603
FNOD381764:0:Tyes--0----
FNUC190304:0:Tyes--12-3450
FPHI484022:1:Tyes--10-23
FRANT:0:Tno--23-10
FSP106370:0:Tyes0------
FSP1855:0:Tyes858-3059--0-
FSUC59374:0:Tyes2417---324170
FTUL351581:0:Tno--10-23
FTUL393011:0:Tno--10-23
FTUL393115:0:Tyes--23-10
FTUL401614:0:Tyes--23-10
FTUL418136:0:Tno--10-23
FTUL458234:0:Tno--10-23
GBET391165:0:Tyes3-10-34
GFOR411154:0:Tyes1491149131063107-14910
GKAU235909:1:Tyes-2253870386386385
GMET269799:1:Tyes9512360210
GOXY290633:5:Tyes0165315071508-15061505
GSUL243231:0:Tyes1123110
GTHE420246:1:Tyes-2043550354354353
GURA351605:0:Tyes-123110
GVIO251221:0:Tyes310-12132939024251046
HACI382638:1:Tyes---0---
HARS204773:0:Tyes--10-23
HAUR316274:2:Tyes756-7--30
HCHE349521:0:Tyes--2-39710
HDUC233412:0:Tyes--1063--10
HHAL349124:0:Tyes1248124812470-12481249
HHEP235279:0:Tyes--10---
HINF281310:0:Tyes--0--12
HINF374930:0:Tyes--2--10
HINF71421:0:Tno--0--12
HMOD498761:0:Tyes--24110
HMUK485914:1:Tyes0------
HNEP81032:0:Tyes0-1102110190611031105
HPY:0:Tno---0---
HPYL357544:1:Tyes---0---
HPYL85963:0:Tno---0---
HSOM205914:1:Tyes--2--10
HSOM228400:0:Tno-6822--10
ILOI283942:0:Tyes--0--12
JSP290400:1:Tyes--35-20
JSP375286:0:Tyes514-2351410
KPNE272620:2:Tyes494925762325210
KRAD266940:2:Fyes2818677--0--
LACI272621:0:Tyes----0--
LBIF355278:2:Tyes-40-4--
LBIF456481:2:Tno-40----
LBOR355276:1:Tyes-01-0--
LBOR355277:1:Tno-10-1--
LBRE387344:2:Tyes-0--0--
LCAS321967:1:Tyes-479--0--
LCHO395495:0:Tyes1497-10-23
LINN272626:1:Tno-10388112
LINT189518:0:Tyes-01-0--
LINT267671:0:Tno-01-0--
LINT363253:3:Tyes-1-01--
LLAC272622:5:Tyes------0
LLAC272623:0:Tyes------0
LMES203120:1:Tyes-0-----
LMON169963:0:Tno-10400112
LMON265669:0:Tyes-10397112
LPNE272624:0:Tno--23-10
LPNE297245:1:Fno--23-10
LPNE297246:1:Fyes--23-10
LPNE400673:0:Tno--23-10
LSAK314315:0:Tyes-0-----
LSPH444177:1:Tyes-19142980297297295
LWEL386043:0:Tyes-10393112
LXYL281090:0:Tyes0------
MABS561007:1:Tyes0------
MACE188937:0:Tyes----0--
MAER449447:0:Tyes191119110119111911-
MAQU351348:2:Tyes--10-23
MAVI243243:0:Tyes517---0--
MBAR269797:1:Tyes----0--
MBOV233413:0:Tno0---446--
MBOV410289:0:Tno0---421--
MCAP243233:0:Tyes--10-23
MEXT419610:0:Tyes2884-2381210
MFLA265072:0:Tyes-210-23
MGIL350054:3:Tyes0------
MHUN323259:0:Tyes00--0--
MLEP272631:0:Tyes0------
MLOT266835:2:Tyes0273558145815145158135812
MMAG342108:0:Tyes0-19731974-19721971
MMAR368407:0:Tyes----0--
MMAR394221:0:Tyes-0983984-982980
MPET420662:1:Tyes--23227710
MSME246196:0:Tyes1192269---0-
MSP164756:1:Tno6130-----
MSP164757:0:Tno5950-----
MSP189918:2:Tyes6320-----
MSP266779:3:Tyes-015201519-15211522
MSP400668:0:Tyes-013641365168613631362
MSP409:2:Tyes04331852185145618531854
MSUC221988:0:Tyes-01353-87213521351
MTBCDC:0:Tno0------
MTBRV:0:Tno0---446--
MTHE264732:0:Tyes-123110
MTUB336982:0:Tno0---437--
MTUB419947:0:Tyes0---462--
MVAN350058:0:Tyes1625---0--
MXAN246197:0:Tyes426210223
NARO279238:0:Tyes1574-01-9493
NEUR228410:0:Tyes--23-10
NEUT335283:2:Tyes--10-23
NFAR247156:2:Tyes1429---0--
NGON242231:0:Tyes374-01-374377
NHAM323097:2:Tyes--10-23
NMEN122586:0:Tno1637-10-16371634
NMEN122587:0:Tyes478-01-478481
NMEN272831:0:Tno78-10-7881
NMEN374833:0:Tno0-16031604-03
NMUL323848:3:Tyes305-23-10
NOCE323261:1:Tyes--10-23
NSP103690:6:Tyes-01467146819650-
NSP35761:0:Tyes-84--0--
NSP35761:1:Tyes241----0-
NSP387092:0:Tyes--01--911
NWIN323098:0:Tyes--10-24
OANT439375:4:Tyes-0--0--
OANT439375:5:Tyes1689-23-10
OCAR504832:0:Tyes--10-34
OIHE221109:0:Tyes31916213200319319318
OTSU357244:0:Fyes---0---
PAER208963:0:Tyes0-18901891-18891888
PAER208964:0:Tno0-28132812-28142815
PARC259536:0:Tyes1-21463-10
PATL342610:0:Tyes-442102023
PCAR338963:0:Tyes-123124110
PCRY335284:1:Tyes1-21750-10
PDIS435591:0:Tyes-0---0261
PENT384676:0:Tyes0-5960-5857
PFLU205922:0:Tyes0-2424242395624252426
PFLU216595:1:Tyes2459-25172516025182519
PFLU220664:0:Tyes54-23-10
PGIN242619:0:Tyes--14161415-9630
PHAL326442:1:Tyes--9569550957958
PING357804:0:Tyes--23-10
PINT246198:1:Tyes--10--826
PLUM243265:0:Fyes0-489488-490491
PLUT319225:0:Tyes-210-23
PMAR146891:0:Tyes--1306130700-
PMAR167539:0:Tyes-01341134200-
PMAR167540:0:Tyes---118100-
PMAR167542:0:Tyes---1308-0-
PMAR167546:0:Tyes--1331133200-
PMAR167555:0:Tyes001573157400-
PMAR59920:0:Tno61261201612612-
PMAR74546:0:Tyes--1276127700-
PMAR74547:0:Tyes0064464500-
PMAR93060:0:Tyes--1371137200-
PMEN399739:0:Tyes0-1191200118117
PMUL272843:1:Tyes--2--10
PNAP365044:8:Tyes-012341233-12351236
PPEN278197:0:Tyes--717-0--
PPRO298386:1:Tyes-0--1587--
PPRO298386:2:Tyes--23-10
PPUT160488:0:Tno0-636406261
PPUT351746:0:Tyes67-106723
PPUT76869:0:Tno0-666706564
PRUM264731:0:Tyes-158518421841--0
PSP117:0:Tyes4349-242283-0
PSP296591:2:Tyes3937326933873386033883389
PSP312153:0:Tyes1123116210
PSP56811:2:Tyes252-2530-252251
PSTU379731:0:Tyes1273-10127323
PSYR205918:0:Tyes250-2365910
PSYR223283:2:Tyes0-1706170539017071708
PTHE370438:0:Tyes---0--4
RAKA293614:0:Fyes--1920-180
RALB246199:0:Tyes-0----730
RBEL336407:0:Tyes---013042-
RBEL391896:0:Fno---2710-
RCAN293613:0:Fyes0-12---
RCAS383372:0:Tyes341884928320314528291086
RCON272944:0:Tno68--71-680
RDEN375451:4:Tyes--2028134
RETL347834:3:Tyes-0-----
RETL347834:5:Tyes1892-23-10
REUT264198:1:Tyes-0-----
REUT264198:2:Tyes0---1973--
REUT264198:3:Tyes--10-23
REUT381666:2:Tyes0-8887-8990
RFEL315456:2:Tyes0--2-0-
RFER338969:1:Tyes1-23-10
RLEG216596:4:Tyes-0-----
RLEG216596:6:Tyes2834-3653660364363
RMAS416276:1:Tyes---37--0
RMET266264:1:Tyes01995-----
RMET266264:2:Tyes--10-23
RPAL258594:0:Tyes0-1226122530812271228
RPAL316055:0:Tyes1365-10251024010261027
RPAL316056:0:Tyes671-34-20
RPAL316057:0:Tyes--7667650767771
RPAL316058:0:Tyes0-13261327210313251324
RPOM246200:1:Tyes-13930-45
RPRO272947:0:Tyes---29-270
RRIC392021:0:Fno57-5960-570
RRIC452659:0:Tyes57-5859-570
RRUB269796:1:Tyes2324-23232410
RSAL288705:0:Tyes0------
RSOL267608:0:Tyes0641--759--
RSOL267608:1:Tyes--23-10
RSP101510:3:Fyes53471441--0--
RSP357808:0:Tyes-048040638554832946
RSPH272943:2:Tyes0------
RSPH272943:4:Tyes-104912-0217
RSPH349101:2:Tno-101712-0217
RSPH349102:5:Tyes-47812-0152
RTYP257363:0:Tno---2-0-
RXYL266117:0:Tyes18750851-2460850-
SACI56780:0:Tyes--10---
SAGA205921:0:Tno------0
SAGA208435:0:Tno-1526----0
SAGA211110:0:Tyes-1542----0
SALA317655:1:Tyes02976192193-18291830
SARE391037:0:Tyes0---0--
SAUR158878:1:Tno--2500249249248
SAUR158879:1:Tno--2450244244243
SAUR196620:0:Tno--2520251251250
SAUR273036:0:Tno--2430242242241
SAUR282458:0:Tno--2560255255254
SAUR282459:0:Tno--3170316316315
SAUR359786:1:Tno--3090308308307
SAUR359787:1:Tno--3110310310309
SAUR367830:3:Tno--2360235235234
SAUR418127:0:Tyes--2460245245244
SAUR426430:0:Tno--2910290290289
SAUR93061:0:Fno--2680266266265
SAUR93062:1:Tno--2530251251250
SAVE227882:1:Fyes46084776--04608-
SBAL399599:3:Tyes2682-23-10
SBAL402882:1:Tno3965-13861387013851384
SBOY300268:1:Tyes302016289109090911912
SCO:2:Fyes60391426--01563-
SDEG203122:0:Tyes-3386956960694693
SDEN318161:0:Tyes-210-23
SDYS300267:1:Tyes2055864108923
SELO269084:0:Tyes-827976975082771
SENT209261:0:Tno84121329799780980981
SENT220341:0:Tno141175623105210
SENT295319:0:Tno50421129289270929930
SENT321314:2:Tno531184223105910
SENT454169:2:Tno538185123105710
SEPI176279:1:Tyes-2212220221221220
SEPI176280:0:Tno-2312320231231230
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