CANDIDATE ID: 276

CANDIDATE ID: 276

NUMBER OF GENES: 7
AVERAGE SCORE:    9.9909919e-1 (range=[0.0,1.0])
AVERAGE MINIMUM BLAST P-VAL:    1.0000000e+0

Gene List
List of organisms containing most genes from the group
    Phylogenetic tree highlighting these organisms (opens new page)
List of organisms containing very few or no genes from the group
List of organisms enriched for group
List of organisms depleted for group
Phylogenetic profile similarity with known pathways
Pairwise genome context scores
Pairwise Blast scores
Pathway or protein complex matches in target organism
Genome context matrix
    Genes and their orthologs in genome browser BioCyc pages



GENE LIST:

- G6581 (rluE) (b1135)
   Products of gene:
     - G6581-MONOMER (23S rRNA pseudouridine 2457 synthase)
       Reactions:
        rRNA  ->  rRNA containing pseudouridine

- G6580 (nudJ) (b1134)
   Products of gene:
     - G6580-MONOMER (HMP-PP hydrolase /thiamin pyrophosphate hydrolase [multifunctional])
       Reactions:
        GDP + H2O  ->  GMP + phosphate + H+
        4-amino-5-hydroxymethyl-2-methylpyrimidine-pyrophosphate + H2O  ->  hydroxymethylpyrimidine phosphate + phosphate + H+
        thiamine diphosphate + H2O  ->  thiamine-phosphate + phosphate + H+

- G6463 (clpS) (b0881)
   Products of gene:
     - G6463-MONOMER (specificity factor for ClpA-ClpP chaperone-protease complex)

- EG11345 (hflD) (b1132)
   Products of gene:
     - EG11345-MONOMER (lysogenization regulator)

- EG11344 (mnmA) (b1133)
   Products of gene:
     - EG11344-MONOMER (tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase)
       Reactions:
        uridine + L-cysteine + ATP  ->  2-thiouridine + L-alanine + AMP + diphosphate

- EG11314 (purB) (b1131)
   Products of gene:
     - ASL-MONOMER (5'-phosphoribosyl-4-(N-succinocarboxamide)-5-aminoimidazole lyase [multifunctional])
       Reactions:
        5'-phosphoribosyl-4-(N-succinocarboxamide)-5-aminoimidazole  ->  fumarate + aminoimidazole carboxamide ribonucleotide
         In pathways
         PRPP-PWY (superpathway of histidine, purine, and pyrimidine biosynthesis)
         DENOVOPURINE2-PWY (purine nucleotides de novo biosynthesis I)
         PWY-841 (PWY-841)
         PWY-6123 (inosine-5'-phosphate biosynthesis I)
         PWY-6124 (PWY-6124)
        adenylo-succinate  ->  fumarate + AMP
         In pathways
         PRPP-PWY (superpathway of histidine, purine, and pyrimidine biosynthesis)
         DENOVOPURINE2-PWY (purine nucleotides de novo biosynthesis I)
         P121-PWY (P121-PWY)
         PWY-841 (PWY-841)
         PWY-6126 (adenosine nucleotides de novo biosynthesis)

- EG11111 (cspD) (b0880)
   Products of gene:
     - EG11111-MONOMER (DNA replication inhibitor)
     - CPLX0-3301 (DNA replication inhibitor)



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ORGANISMS CONTAINING AT LEAST 6 GENES FROM THE GROUP:

Total number of orgs: 133
Effective number of orgs (counting one per cluster within 468 clusters): 81

Organism list
Homologs in each organism in the list
Features enriched in organism list


Follow (ncbi) link, when present, to find the set of organism features for each organism
Org ID  Org Name  # genes in group found in org  
YPSE349747 ncbi Yersinia pseudotuberculosis IP 317587
YPSE273123 ncbi Yersinia pseudotuberculosis IP 329537
YPES386656 ncbi Yersinia pestis Pestoides F7
YPES377628 ncbi Yersinia pestis Nepal5167
YPES360102 ncbi Yersinia pestis Antiqua7
YPES349746 ncbi Yersinia pestis Angola7
YPES214092 ncbi Yersinia pestis CO927
YPES187410 ncbi Yersinia pestis KIM 106
YENT393305 ncbi Yersinia enterocolitica enterocolitica 80817
XORY360094 ncbi Xanthomonas oryzae pv. oryzae PXO99A7
XORY342109 ncbi Xanthomonas oryzae pv. oryzae MAFF 3110187
XORY291331 ncbi Xanthomonas oryzae pv. oryzae KACC103317
XFAS160492 ncbi Xylella fastidiosa 9a5c6
XCAM487884 Xanthomonas campestris pv. paulliniae7
XCAM316273 ncbi Xanthomonas campestris pv. vesicatoria str. 85-107
XCAM314565 ncbi Xanthomonas campestris pv. campestris str. 80047
XCAM190485 ncbi Xanthomonas campestris pv. campestris str. ATCC 339137
XAXO190486 ncbi Xanthomonas axonopodis pv. citri str. 3067
VVUL216895 ncbi Vibrio vulnificus CMCP66
VVUL196600 ncbi Vibrio vulnificus YJ0166
VPAR223926 ncbi Vibrio parahaemolyticus RIMD 22106336
VFIS312309 ncbi Vibrio fischeri ES1146
VCHO345073 ncbi Vibrio cholerae O3956
VCHO ncbi Vibrio cholerae O1 biovar El Tor str. N169616
TTUR377629 ncbi Teredinibacter turnerae T79017
TDEN292415 ncbi Thiobacillus denitrificans ATCC 252596
STYP99287 ncbi Salmonella enterica enterica serovar Typhimurium str. LT27
SSP94122 ncbi Shewanella sp. ANA-37
SSON300269 ncbi Shigella sonnei Ss0467
SSED425104 ncbi Shewanella sediminis HAW-EB37
SPRO399741 ncbi Serratia proteamaculans 5687
SPEA398579 ncbi Shewanella pealeana ATCC 7003457
SONE211586 ncbi Shewanella oneidensis MR-17
SLOI323850 ncbi Shewanella loihica PV-47
SHIGELLA ncbi Shigella flexneri 2a str. 2457T7
SHAL458817 ncbi Shewanella halifaxensis HAW-EB47
SGLO343509 ncbi Sodalis glossinidius morsitans6
SFLE373384 ncbi Shigella flexneri 5 str. 84017
SFLE198214 ncbi Shigella flexneri 2a str. 3017
SENT454169 ncbi Salmonella enterica enterica serovar Heidelberg str. SL4767
SENT321314 ncbi Salmonella enterica enterica serovar Choleraesuis str. SC-B677
SENT295319 ncbi Salmonella enterica enterica serovar Paratyphi A str. ATCC 91507
SENT220341 ncbi Salmonella enterica enterica serovar Typhi str. CT187
SENT209261 ncbi Salmonella enterica enterica serovar Typhi str. Ty27
SDYS300267 ncbi Shigella dysenteriae Sd1977
SDEN318161 ncbi Shewanella denitrificans OS2176
SDEG203122 ncbi Saccharophagus degradans 2-407
SBOY300268 ncbi Shigella boydii Sb2277
SBAL402882 ncbi Shewanella baltica OS1857
SBAL399599 ncbi Shewanella baltica OS1957
RMET266264 ncbi Ralstonia metallidurans CH346
REUT381666 ncbi Ralstonia eutropha H166
REUT264198 ncbi Ralstonia eutropha JMP1346
PSYR223283 ncbi Pseudomonas syringae pv. tomato str. DC30007
PSYR205918 ncbi Pseudomonas syringae pv. syringae B728a7
PSTU379731 ncbi Pseudomonas stutzeri A15017
PPUT76869 ncbi Pseudomonas putida GB-17
PPUT351746 ncbi Pseudomonas putida F17
PPUT160488 ncbi Pseudomonas putida KT24407
PPRO298386 ncbi Photobacterium profundum SS96
PMUL272843 ncbi Pasteurella multocida multocida Pm706
PMEN399739 ncbi Pseudomonas mendocina ymp7
PLUM243265 ncbi Photorhabdus luminescens laumondii TTO17
PHAL326442 ncbi Pseudoalteromonas haloplanktis TAC1256
PFLU220664 ncbi Pseudomonas fluorescens Pf-57
PFLU216595 ncbi Pseudomonas fluorescens SBW257
PFLU205922 ncbi Pseudomonas fluorescens Pf0-17
PENT384676 ncbi Pseudomonas entomophila L487
PATL342610 ncbi Pseudoalteromonas atlantica T6c6
PAER208964 ncbi Pseudomonas aeruginosa PAO17
PAER208963 ncbi Pseudomonas aeruginosa UCBPP-PA147
NEUT335283 ncbi Nitrosomonas eutropha C916
MSUC221988 ncbi Mannheimia succiniciproducens MBEL55E6
MSP400668 ncbi Marinomonas sp. MWYL16
MFLA265072 ncbi Methylobacillus flagellatus KT6
MCAP243233 ncbi Methylococcus capsulatus Bath6
MAQU351348 ncbi Marinobacter aquaeolei VT87
KPNE272620 ncbi Klebsiella pneumoniae pneumoniae MGH 785787
JSP375286 ncbi Janthinobacterium sp. Marseille6
ILOI283942 ncbi Idiomarina loihiensis L2TR6
HSOM228400 ncbi Haemophilus somnus 23366
HSOM205914 ncbi Haemophilus somnus 129PT6
HCHE349521 ncbi Hahella chejuensis KCTC 23967
HARS204773 ncbi Herminiimonas arsenicoxydans6
ESP42895 Enterobacter sp.7
EFER585054 ncbi Escherichia fergusonii ATCC 354697
ECOO157 ncbi Escherichia coli O157:H7 EDL9337
ECOL83334 Escherichia coli O157:H77
ECOL585397 ncbi Escherichia coli ED1a7
ECOL585057 ncbi Escherichia coli IAI397
ECOL585056 ncbi Escherichia coli UMN0267
ECOL585055 ncbi Escherichia coli 559897
ECOL585035 ncbi Escherichia coli S887
ECOL585034 ncbi Escherichia coli IAI17
ECOL481805 ncbi Escherichia coli ATCC 87397
ECOL469008 ncbi Escherichia coli BL21(DE3)7
ECOL439855 ncbi Escherichia coli SMS-3-57
ECOL413997 ncbi Escherichia coli B str. REL6067
ECOL409438 ncbi Escherichia coli SE117
ECOL405955 ncbi Escherichia coli APEC O16
ECOL364106 ncbi Escherichia coli UTI897
ECOL362663 ncbi Escherichia coli 5367
ECOL331111 ncbi Escherichia coli E24377A7
ECOL316407 ncbi Escherichia coli K-12 substr. W31107
ECOL199310 ncbi Escherichia coli CFT0737
ECAR218491 ncbi Pectobacterium atrosepticum SCRI10437
DNOD246195 ncbi Dichelobacter nodosus VCS1703A6
DARO159087 ncbi Dechloromonas aromatica RCB6
CVIO243365 ncbi Chromobacterium violaceum ATCC 124726
CSAL290398 ncbi Chromohalobacter salexigens DSM 30437
CPSY167879 ncbi Colwellia psychrerythraea 34H7
CJAP155077 Cellvibrio japonicus7
BVIE269482 ncbi Burkholderia vietnamiensis G46
BTHA271848 ncbi Burkholderia thailandensis E2646
BSP36773 Burkholderia sp.6
BPSE320373 ncbi Burkholderia pseudomallei 6686
BPSE320372 ncbi Burkholderia pseudomallei 1710b6
BPSE272560 ncbi Burkholderia pseudomallei K962436
BMAL320389 ncbi Burkholderia mallei NCTC 102476
BMAL320388 ncbi Burkholderia mallei SAVP16
BMAL243160 ncbi Burkholderia mallei ATCC 233446
BCEN331272 ncbi Burkholderia cenocepacia HI24246
BCEN331271 ncbi Burkholderia cenocepacia AU 10546
BAMB398577 ncbi Burkholderia ambifaria MC40-66
BAMB339670 ncbi Burkholderia ambifaria AMMD6
ASP76114 ncbi Aromatoleum aromaticum EbN16
ASP62977 ncbi Acinetobacter sp. ADP16
ASP62928 ncbi Azoarcus sp. BH726
ASAL382245 ncbi Aeromonas salmonicida salmonicida A4497
AHYD196024 Aeromonas hydrophila dhakensis7
AFER243159 ncbi Acidithiobacillus ferrooxidans ATCC 232706
AEHR187272 ncbi Alkalilimnicola ehrlichii MLHE-16
ABOR393595 ncbi Alcanivorax borkumensis SK27


Names of the homologs of the genes in the group in each of these orgs
  G6581   G6580   G6463   EG11345   EG11344   EG11314   EG11111   
YPSE349747 YPSIP31758_1614YPSIP31758_1613YPSIP31758_2607YPSIP31758_1611YPSIP31758_1612YPSIP31758_1610YPSIP31758_2609
YPSE273123 YPTB2428YPTB2429YPTB1393YPTB2431YPTB2430YPTB2432YPTB1392
YPES386656 YPDSF_1808YPDSF_1809YPDSF_2328YPDSF_1811YPDSF_1810YPDSF_1812YPDSF_2330
YPES377628 YPN_1991YPN_1992YPN_2613YPN_1994YPN_1993YPN_1995YPN_2614
YPES360102 YPA_1884YPA_1885YPA_0657YPA_1887YPA_1886YPA_1888YPA_0656
YPES349746 YPANGOLA_A2849YPANGOLA_A2850YPANGOLA_A1600YPANGOLA_A2852YPANGOLA_A2851YPANGOLA_A2853YPANGOLA_A1599
YPES214092 YPO1640YPO1639YPO1367YPO1637YPO1638YPO1636YPO1366
YPES187410 Y1801Y1800Y2810Y1798Y1799Y1797
YENT393305 YE1724YE1723YE1517YE1721YE1722YE1720YE1516
XORY360094 XOOORF_5144XOOORF_2787XOOORF_2786XOOORF_2789XOOORF_2788XOOORF_2952XOOORF_3133
XORY342109 XOO4268XOO2414XOO2413XOO2416XOO2415XOO1930XOO1765
XORY291331 XOO4531XOO2555XOO2554XOO2557XOO2556XOO2048XOO1870
XFAS160492 XF1441XF1442XF1439XF1440XF1553XF2352
XCAM487884 XCC-B100_0298XCC-B100_2264XCC-B100_2265XCC-B100_2262XCC-B100_2263XCC-B100_2781XCC-B100_3017
XCAM316273 XCAORF_4237XCAORF_2244XCAORF_2245XCAORF_2242XCAORF_2243XCAORF_1757XCAORF_1541
XCAM314565 XC_0283XC_2220XC_2219XC_2222XC_2221XC_2744XC_2955
XCAM190485 XCC0273XCC1965XCC1966XCC1963XCC1964XCC1492XCC1286
XAXO190486 XAC0290XAC1999XAC2000XAC1997XAC1998XAC1539XAC1337
VVUL216895 VV1_2116VV1_2120VV1_2927VV1_2926VV1_2928VV1_2119
VVUL196600 VV2326VV2323VV1342VV1343VV1341VV2324
VPAR223926 VP1010VP1013VP1129VP1130VP1128VP1012
VFIS312309 VF1776VF1766VF1785VF1784VF1786VF1767
VCHO345073 VC0395_A0710VC0395_A0713VC0395_A0645VC0395_A0646VC0395_A0644VC0395_A0712
VCHO VC1140VC1143VC1127VC1128VC1126VC1142
TTUR377629 TERTU_1959TERTU_1958TERTU_1962TERTU_1750TERTU_1751TERTU_1749TERTU_1961
TDEN292415 TBD_0853TBD_0852TBD_1236TBD_0851TBD_0518TBD_0855
STYP99287 STM1237STM1235STM0944STM1233STM1234STM1232STM0943
SSP94122 SHEWANA3_1749SHEWANA3_1748SHEWANA3_1752SHEWANA3_1746SHEWANA3_1747SHEWANA3_1745SHEWANA3_1751
SSON300269 SSO_1153SSO_1152SSO_0882SSO_1150SSO_1151SSO_1149SSO_0867
SSED425104 SSED_1882SSED_2716SSED_1885SSED_1880SSED_1881SSED_1879SSED_1884
SPRO399741 SPRO_2024SPRO_2023SPRO_1673SPRO_2021SPRO_2022SPRO_2020SPRO_1672
SPEA398579 SPEA_2536SPEA_2537SPEA_2533SPEA_2539SPEA_2538SPEA_2540SPEA_2534
SONE211586 SO_2630SO_2631SO_2627SO_2634SO_2633SO_2635SO_2628
SLOI323850 SHEW_1562SHEW_1561SHEW_1565SHEW_1559SHEW_1560SHEW_1558SHEW_1564
SHIGELLA YMFCS1236YLJAYCFCYCFBPURBCSPD
SHAL458817 SHAL_1717SHAL_1716SHAL_1720SHAL_1714SHAL_1715SHAL_1713SHAL_1719
SGLO343509 SG1086SG1101SG1084SG1085SG1083SG1100
SFLE373384 SFV_1170SFV_1169SFV_0872SFV_1167SFV_1168SFV_1166SFV_0871
SFLE198214 AAN42771.1AAN42770.1AAN42474.1AAN42768.1AAN42769.1AAN42767.1AAN42473.1
SENT454169 SEHA_C1354SEHA_C1352SEHA_C1043SEHA_C1350SEHA_C1351SEHA_C1349SEHA_C1042
SENT321314 SCH_1188SCH_1186SCH_0899SCH_1184SCH_1185SCH_1183SCH_0898
SENT295319 SPA1613SPA1615SPA1855SPA1617SPA1616SPA1618SPA1856
SENT220341 STY1277STY1275STY0942STY1273STY1274STY1272STY0939
SENT209261 T1683T1685T1989T1687T1686T1688T1990
SDYS300267 SDY_2017SDY_2018SDY_2380SDY_2020SDY_2019SDY_2021SDY_2381
SDEN318161 SDEN_1830SDEN_1833SDEN_1827SDEN_1828SDEN_1826SDEN_1832
SDEG203122 SDE_1683SDE_1682SDE_1686SDE_1676SDE_1677SDE_1675SDE_1685
SBOY300268 SBO_1904SBO_1905SBO_0814SBO_1907SBO_1906SBO_1908SBO_0813
SBAL402882 SHEW185_2469SHEW185_2470SHEW185_2466SHEW185_2472SHEW185_2471SHEW185_2473SHEW185_2467
SBAL399599 SBAL195_2589SBAL195_2590SBAL195_2586SBAL195_2592SBAL195_2591SBAL195_2593SBAL195_2587
RMET266264 RMET_2896RMET_2959RMET_2893RMET_2958RMET_2956RMET_5818
REUT381666 H16_A3057H16_A3127H16_A3053H16_A3126H16_A3124H16_B0002
REUT264198 REUT_A2757REUT_A2822REUT_A2753REUT_A2821REUT_A2819REUT_C6028
PSYR223283 PSPTO_4794PSPTO_3357PSPTO_3354PSPTO_3359PSPTO_3358PSPTO_3360PSPTO_3355
PSYR205918 PSYR_4336PSYR_3189PSYR_3184PSYR_3191PSYR_3190PSYR_3192PSYR_3185
PSTU379731 PST_3719PST_2303PST_2299PST_2305PST_2304PST_2306PST_2300
PPUT76869 PPUTGB1_4832PPUTGB1_3618PPUTGB1_3614PPUTGB1_3620PPUTGB1_3619PPUTGB1_3621PPUTGB1_3615
PPUT351746 PPUT_4654PPUT_1820PPUT_1824PPUT_1818PPUT_1819PPUT_1817PPUT_1823
PPUT160488 PP_4778PP_4013PP_4009PP_4015PP_4014PP_4016PP_4010
PPRO298386 PBPRA1148PBPRA1151PBPRA1146PBPRA1147PBPRA1145PBPRA1150
PMUL272843 PM1605PM1604PM1850PM1336PM1851PM0481
PMEN399739 PMEN_3745PMEN_2398PMEN_2394PMEN_2400PMEN_2399PMEN_2402PMEN_2395
PLUM243265 PLU2802PLU2803PLU1593PLU2805PLU2804PLU2806PLU1592
PHAL326442 PSHAA1688PSHAA1725PSHAA1691PSHAA1690PSHAA1692PSHAA1726
PFLU220664 PFL_5423PFL_3890PFL_3886PFL_3892PFL_3891PFL_3893PFL_3887
PFLU216595 PFLU5395PFLU3810PFLU3806PFLU3812PFLU3811PFLU3813PFLU3807
PFLU205922 PFL_4941PFL_3595PFL_3591PFL_3597PFL_3596PFL_3598PFL_3592
PENT384676 PSEEN4798PSEEN2201PSEEN2206PSEEN2199PSEEN2200PSEEN2198PSEEN2205
PATL342610 PATL_2378PATL_2375PATL_2380PATL_2379PATL_2381PATL_2376
PAER208964 PA3968PA2625PA2621PA2627PA2626PA2629PA2622
PAER208963 PA14_12540PA14_30160PA14_30210PA14_30140PA14_30150PA14_30110PA14_30200
NEUT335283 NEUT_2203NEUT_0259NEUT_2047NEUT_2336NEUT_0410NEUT_2046
MSUC221988 MS2342MS2341MS0298MS0301MS0297MS1095
MSP400668 MMWYL1_3264MMWYL1_3261MMWYL1_3266MMWYL1_3265MMWYL1_3268MMWYL1_3262
MFLA265072 MFLA_2138MFLA_2114MFLA_0509MFLA_2115MFLA_1819MFLA_2140
MCAP243233 MCA_0548MCA_1786MCA_1788MCA_0201MCA_1785MCA_1784
MAQU351348 MAQU_1760MAQU_1761MAQU_1758MAQU_1763MAQU_1762MAQU_1764MAQU_1759
KPNE272620 GKPORF_B0061GKPORF_B0060GKPORF_B5353GKPORF_B0058GKPORF_B0059GKPORF_B0057GKPORF_B5352
JSP375286 MMA_2517MMA_0374MMA_2515MMA_0373MMA_0359MMA_2516
ILOI283942 IL1309IL0675IL1311IL1310IL1312IL0676
HSOM228400 HSM_1802HSM_1801HSM_0417HSM_1837HSM_0418HSM_1331
HSOM205914 HS_1640HS_1639HS_1594HS_1683HS_1593HS_0856
HCHE349521 HCH_02335HCH_02334HCH_02338HCH_02332HCH_02333HCH_02331HCH_02337
HARS204773 HEAR2449HEAR0327HEAR2446HEAR0326HEAR0312HEAR2448
ESP42895 ENT638_1648ENT638_1647ENT638_1398ENT638_1645ENT638_1646ENT638_1644ENT638_1397
EFER585054 EFER_1795EFER_1796EFER_1029EFER_1798EFER_1797EFER_1799EFER_1028
ECOO157 YMFCZ1863YLJAYCFCYCFBPURBCSPD
ECOL83334 ECS1607ECS1606ECS0967ECS1604ECS1605ECS1603ECS0966
ECOL585397 ECED1_1279ECED1_1278ECED1_0848ECED1_1276ECED1_1277ECED1_1275ECED1_0847
ECOL585057 ECIAI39_2002ECIAI39_2003ECIAI39_2270ECIAI39_2005ECIAI39_2004ECIAI39_2006ECIAI39_2272
ECOL585056 ECUMN_1379ECUMN_1378ECUMN_1076ECUMN_1376ECUMN_1377ECUMN_1375ECUMN_1075
ECOL585055 EC55989_1248EC55989_1247EC55989_0926EC55989_1245EC55989_1246EC55989_1244EC55989_0925
ECOL585035 ECS88_1150ECS88_1149ECS88_0903ECS88_1147ECS88_1148ECS88_1146ECS88_0902
ECOL585034 ECIAI1_1173ECIAI1_1172ECIAI1_0921ECIAI1_1170ECIAI1_1171ECIAI1_1169ECIAI1_0920
ECOL481805 ECOLC_2468ECOLC_2469ECOLC_2715ECOLC_2471ECOLC_2470ECOLC_2472ECOLC_2716
ECOL469008 ECBD_2464ECBD_2465ECBD_2713ECBD_2467ECBD_2466ECBD_2468ECBD_2714
ECOL439855 ECSMS35_1990ECSMS35_1991ECSMS35_2279ECSMS35_1993ECSMS35_1992ECSMS35_1994ECSMS35_2280
ECOL413997 ECB_01133ECB_01132ECB_00886ECB_01130ECB_01131ECB_01129ECB_00885
ECOL409438 ECSE_1201ECSE_1200ECSE_0939ECSE_1198ECSE_1199ECSE_1197ECSE_0938
ECOL405955 APECO1_217APECO1_216APECO1_1214APECO1_214APECO1_215APECO1_213
ECOL364106 UTI89_C1264UTI89_C1263UTI89_C0887UTI89_C1261UTI89_C1262UTI89_C1260UTI89_C0885
ECOL362663 ECP_1130ECP_1129ECP_0896ECP_1127ECP_1128ECP_1126ECP_0895
ECOL331111 ECE24377A_1298ECE24377A_1297ECE24377A_0954ECE24377A_1295ECE24377A_1296ECE24377A_1294ECE24377A_0953
ECOL316407 ECK1121:JW1121:B1135ECK1120:JW1120:B1134ECK0872:JW0865:B0881ECK1118:JW5165:B1132ECK1119:JW1119:B1133ECK1117:JW1117:B1131ECK0871:JW0864:B0880
ECOL199310 C1514C1513C1018C1511C1512C1510C1017
ECAR218491 ECA2440ECA2441ECA2657ECA2443ECA2442ECA2444ECA2659
DNOD246195 DNO_0584DNO_0139DNO_0656DNO_0629DNO_0627DNO_0667
DARO159087 DARO_3254DARO_3293DARO_3094DARO_3291DARO_3288DARO_3093
CVIO243365 CV_3663CV_3401CV_3668CV_3402CV_3834CV_3667
CSAL290398 CSAL_2442CSAL_2443CSAL_2441CSAL_2445CSAL_2444CSAL_2446CSAL_1668
CPSY167879 CPS_2898CPS_2899CPS_2894CPS_2901CPS_2900CPS_2902CPS_2895
CJAP155077 CJA_2572CJA_2484CJA_2569CJA_2491CJA_2490CJA_2492CJA_2570
BVIE269482 BCEP1808_2603BCEP1808_0664BCEP1808_2597BCEP1808_0663BCEP1808_0632BCEP1808_2598
BTHA271848 BTH_I0758BTH_I1258BTH_I0762BTH_I1257BTH_I1221BTH_I2936
BSP36773 BCEP18194_A5857BCEP18194_A3785BCEP18194_A5851BCEP18194_A3784BCEP18194_A3752BCEP18194_A5852
BPSE320373 BURPS668_0954BURPS668_3353BURPS668_0959BURPS668_3354BURPS668_3402BURPS668_3598
BPSE320372 BURPS1710B_A1168BURPS1710B_A3670BURPS1710B_A1173BURPS1710B_A3671BURPS1710B_A3715BURPS1710B_A3897
BPSE272560 BPSL0895BPSL2888BPSL0898ABPSL2889BPSL2928BPSL3079
BMAL320389 BMA10247_0134BMA10247_2545BMA10247_2157BMA10247_2544BMA10247_2627BMA10247_3184
BMAL320388 BMASAVP1_A0685BMASAVP1_A0279BMASAVP1_A0575BMASAVP1_A0278BMASAVP1_A0358BMASAVP1_A0574
BMAL243160 BMA_0485BMA_2365BMA_2280BMA_2364BMA_2442BMA_2791
BCEN331272 BCEN2424_2525BCEN2424_0699BCEN2424_2519BCEN2424_0698BCEN2424_0666BCEN2424_2520
BCEN331271 BCEN_1914BCEN_0215BCEN_1908BCEN_0214BCEN_0183BCEN_1909
BAMB398577 BAMMC406_2444BAMMC406_0618BAMMC406_2437BAMMC406_0617BAMMC406_0587BAMMC406_2438
BAMB339670 BAMB_2573BAMB_0592BAMB_2567BAMB_0591BAMB_0561BAMB_0408
ASP76114 EBA713EBA990EBD83EBA986EBA1420EBC12
ASP62977 ACIAD1189ACIAD1222ACIAD1362ACIAD1220ACIAD1221ACIAD1219
ASP62928 AZO1101AZO2774AZO1133AZO2772AZO0901AZO1134
ASAL382245 ASA_1393ASA_1392ASA_2447ASA_1390ASA_1391ASA_1389ASA_2448
AHYD196024 AHA_1417AHA_1416AHA_1856AHA_1414AHA_1415AHA_1413AHA_1855
AFER243159 AFE_0923AFE_2517AFE_2123AFE_2360AFE_0746AFE_2450
AEHR187272 MLG_1089MLG_1450MLG_1448MLG_1452MLG_1451MLG_1358
ABOR393595 ABO_1280ABO_1276ABO_1284ABO_1274ABO_1275ABO_1273ABO_1283


Organism features enriched in list (features available for 127 out of the 133 orgs in the list)
Feature    Pvalue       Num occurrences in list  Total num occurrences  
Arrangment:Chains 0.0000169692
Disease:Bubonic_plague 0.000097366
Disease:Dysentery 0.000097366
Disease:Gastroenteritis 0.00002601013
Endospores:No 0.000022727211
GC_Content_Range4:0-40 2.684e-234213
GC_Content_Range4:40-60 2.310e-1283224
GC_Content_Range7:30-40 4.410e-164166
GC_Content_Range7:40-50 0.006360335117
GC_Content_Range7:50-60 1.369e-948107
GC_Content_Range7:60-70 0.003811640134
Genome_Size_Range5:0-2 1.412e-181155
Genome_Size_Range5:2-4 4.590e-917197
Genome_Size_Range5:4-6 7.322e-2286184
Genome_Size_Range5:6-10 0.00001152347
Genome_Size_Range9:1-2 1.008e-141128
Genome_Size_Range9:2-3 0.000011110120
Genome_Size_Range9:3-4 0.0011502777
Genome_Size_Range9:4-5 2.122e-74196
Genome_Size_Range9:5-6 1.932e-114588
Genome_Size_Range9:6-8 4.569e-72238
Gram_Stain:Gram_Neg 1.403e-24119333
Habitat:Multiple 0.002720251178
Motility:No 4.529e-117151
Motility:Yes 1.104e-1496267
Oxygen_Req:Anaerobic 5.788e-93102
Oxygen_Req:Facultative 1.217e-1278201
Pathogenic_in:No 0.000056031226
Pathogenic_in:Plant 0.0010990915
Shape:Coccus 1.133e-7282
Shape:Rod 5.779e-19116347
Temp._range:Mesophilic 0.0006311115473
Temp._range:Thermophilic 0.0014409135



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ORGANISMS CONTAINING AT MOST 1 GENES FROM THE GROUP:

Total number of orgs: 175
Effective number of orgs (counting one per cluster within 468 clusters): 147

Organism list
Homologs in each organism in the list
Features enriched in organism list


Follow (ncbi) link, when present, to find the set of organism features for each organism
Org ID  Org Name  # genes in group found in org  
ZMOB264203 ncbi Zymomonas mobilis mobilis ZM41
XAUT78245 ncbi Xanthobacter autotrophicus Py21
WSUC273121 ncbi Wolinella succinogenes DSM 17401
WPIP955 Wolbachia pipientis1
WPIP80849 Wolbachia endosymbiont of Brugia malayi1
UURE95667 Ureaplasma urealyticum serovar 131
UURE95664 Ureaplasma urealyticum serovar 101
UPAR505682 ncbi Ureaplasma parvum serovar 3 str. ATCC 278151
UMET351160 ncbi uncultured methanogenic archaeon RC-I0
TWHI218496 ncbi Tropheryma whipplei TW08/271
TWHI203267 ncbi Tropheryma whipplei Twist1
TVOL273116 ncbi Thermoplasma volcanium GSS11
TPEN368408 ncbi Thermofilum pendens Hrk 51
TPAL243276 ncbi Treponema pallidum pallidum Nichols0
TLET416591 ncbi Thermotoga lettingae TMO1
TKOD69014 ncbi Thermococcus kodakarensis KOD11
TDEN326298 ncbi Sulfurimonas denitrificans DSM 12511
TACI273075 ncbi Thermoplasma acidophilum DSM 17281
SSP84588 ncbi Synechococcus sp. WH 81021
SSP64471 ncbi Synechococcus sp. CC93111
SSP387093 ncbi Sulfurovum sp. NBC37-11
SMAR399550 ncbi Staphylothermus marinus F11
RTYP257363 ncbi Rickettsia typhi Wilmington0
RSP101510 ncbi Rhodococcus jostii RHA11
RRIC452659 ncbi Rickettsia rickettsii Iowa0
RRIC392021 ncbi Rickettsia rickettsii Sheila Smith0
RPRO272947 ncbi Rickettsia prowazekii Madrid E0
RPAL316057 ncbi Rhodopseudomonas palustris BisB51
RMAS416276 ncbi Rickettsia massiliae MTU50
RFEL315456 ncbi Rickettsia felis URRWXCal21
RCON272944 ncbi Rickettsia conorii Malish 71
RCAN293613 ncbi Rickettsia canadensis McKiel1
RBEL391896 ncbi Rickettsia bellii OSU 85-3891
RBEL336407 ncbi Rickettsia bellii RML369-C1
RAKA293614 ncbi Rickettsia akari Hartford0
PTOR263820 ncbi Picrophilus torridus DSM 97901
PMAR93060 ncbi Prochlorococcus marinus MIT 92150
PMAR74546 ncbi Prochlorococcus marinus MIT 93120
PMAR59920 ncbi Prochlorococcus marinus NATL2A0
PMAR167555 ncbi Prochlorococcus marinus NATL1A0
PMAR167546 ncbi Prochlorococcus marinus MIT 93010
PMAR167542 ncbi Prochlorococcus marinus MIT 95150
PMAR167540 Prochlorococcus marinus pastoris MED4ax0
PMAR167539 ncbi Prochlorococcus marinus marinus CCMP13751
PMAR146891 ncbi Prochlorococcus marinus AS96010
PLUT319225 ncbi Chlorobium luteolum DSM 2731
PINT246198 Prevotella intermedia 171
PHOR70601 ncbi Pyrococcus horikoshii OT31
PGIN242619 ncbi Porphyromonas gingivalis W831
PFUR186497 ncbi Pyrococcus furiosus DSM 36381
PAST100379 Onion yellows phytoplasma1
PACN267747 ncbi Propionibacterium acnes KPA1712021
PABY272844 ncbi Pyrococcus abyssi GE51
OTSU357244 ncbi Orientia tsutsugamushi Boryong0
NSP387092 ncbi Nitratiruptor sp. SB155-21
NSEN222891 ncbi Neorickettsia sennetsu Miyayama1
NPHA348780 ncbi Natronomonas pharaonis DSM 21601
NFAR247156 ncbi Nocardia farcinica IFM 101521
MVAN350058 ncbi Mycobacterium vanbaalenii PYR-11
MTUB419947 ncbi Mycobacterium tuberculosis H37Ra1
MTUB336982 ncbi Mycobacterium tuberculosis F111
MTHE349307 ncbi Methanosaeta thermophila PT1
MTBRV ncbi Mycobacterium tuberculosis H37Rv1
MTBCDC ncbi Mycobacterium tuberculosis CDC15511
MSYN262723 ncbi Mycoplasma synoviae 531
MSTA339860 ncbi Methanosphaera stadtmanae DSM 30911
MSP409 Methylobacterium sp.1
MSP189918 ncbi Mycobacterium sp. KMS1
MSP164757 ncbi Mycobacterium sp. JLS1
MSP164756 ncbi Mycobacterium sp. MCS1
MSME246196 ncbi Mycobacterium smegmatis MC2 1551
MSED399549 ncbi Metallosphaera sedula DSM 53481
MPUL272635 ncbi Mycoplasma pulmonis UAB CTIP1
MPNE272634 ncbi Mycoplasma pneumoniae M1290
MPEN272633 ncbi Mycoplasma penetrans HF-21
MMYC272632 ncbi Mycoplasma mycoides mycoides SC str. PG11
MMOB267748 ncbi Mycoplasma mobile 163K1
MMAZ192952 ncbi Methanosarcina mazei Go11
MMAR444158 ncbi Methanococcus maripaludis C61
MMAR426368 ncbi Methanococcus maripaludis C71
MMAR402880 ncbi Methanococcus maripaludis C50
MMAR368407 ncbi Methanoculleus marisnigri JR10
MMAR267377 ncbi Methanococcus maripaludis S21
MLEP272631 ncbi Mycobacterium leprae TN1
MLAB410358 ncbi Methanocorpusculum labreanum Z0
MKAN190192 ncbi Methanopyrus kandleri AV191
MJAN243232 ncbi Methanocaldococcus jannaschii DSM 26611
MHYO295358 ncbi Mycoplasma hyopneumoniae 2321
MHYO262722 ncbi Mycoplasma hyopneumoniae 74481
MHYO262719 ncbi Mycoplasma hyopneumoniae J1
MHUN323259 ncbi Methanospirillum hungatei JF-11
MGIL350054 ncbi Mycobacterium gilvum PYR-GCK1
MGEN243273 ncbi Mycoplasma genitalium G371
MFLO265311 ncbi Mesoplasma florum L11
MEXT419610 ncbi Methylobacterium extorquens PA11
MCAP340047 ncbi Mycoplasma capricolum capricolum ATCC 273431
MBUR259564 ncbi Methanococcoides burtonii DSM 62420
MBOV410289 ncbi Mycobacterium bovis BCG str. Pasteur 1173P21
MBOV233413 ncbi Mycobacterium bovis AF2122/971
MBAR269797 ncbi Methanosarcina barkeri Fusaro1
MAVI243243 ncbi Mycobacterium avium 1041
MART243272 ncbi Mycoplasma arthritidis 158L3-11
MAEO419665 ncbi Methanococcus aeolicus Nankai-31
MACE188937 ncbi Methanosarcina acetivorans C2A1
MABS561007 ncbi Mycobacterium abscessus ATCC 199771
LINT267671 ncbi Leptospira interrogans serovar Copenhageni str. Fiocruz L1-1301
LINT189518 ncbi Leptospira interrogans serovar Lai str. 566011
LBOR355277 ncbi Leptospira borgpetersenii serovar Hardjo-bovis JB1971
LBOR355276 ncbi Leptospira borgpetersenii serovar Hardjo-bovis L5501
HWAL362976 ncbi Haloquadratum walsbyi DSM 167901
HSP64091 ncbi Halobacterium sp. NRC-11
HSAL478009 ncbi Halobacterium salinarum R11
HPYL85963 ncbi Helicobacter pylori J991
HPYL357544 ncbi Helicobacter pylori HPAG11
HPY ncbi Helicobacter pylori 266951
HMUK485914 ncbi Halomicrobium mukohataei DSM 122861
HMAR272569 ncbi Haloarcula marismortui ATCC 430491
HHEP235279 ncbi Helicobacter hepaticus ATCC 514491
HBUT415426 ncbi Hyperthermus butylicus DSM 54561
HACI382638 ncbi Helicobacter acinonychis Sheeba1
FNOD381764 ncbi Fervidobacterium nodosum Rt17-B11
FMAG334413 ncbi Finegoldia magna ATCC 293281
ERUM302409 ncbi Ehrlichia ruminantium Gardel0
ERUM254945 ncbi Ehrlichia ruminantium Welgevonden0
ECHA205920 ncbi Ehrlichia chaffeensis Arkansas0
ECAN269484 ncbi Ehrlichia canis Jake0
DSP255470 ncbi Dehalococcoides sp. CBDB11
DSP216389 ncbi Dehalococcoides sp. BAV11
DETH243164 ncbi Dehalococcoides ethenogenes 1951
CTRA471473 ncbi Chlamydia trachomatis L2b/UCH-1/proctitis1
CTRA471472 ncbi Chlamydia trachomatis 434/Bu1
CTEP194439 ncbi Chlorobium tepidum TLS1
CSUL444179 ncbi Candidatus Sulcia muelleri GWSS0
CSP78 Caulobacter sp.1
CPNE182082 ncbi Chlamydophila pneumoniae TW-1831
CPNE138677 ncbi Chlamydophila pneumoniae J1381
CPNE115713 ncbi Chlamydophila pneumoniae CWL0291
CPNE115711 ncbi Chlamydophila pneumoniae AR391
CPEL335992 ncbi Candidatus Pelagibacter ubique HTCC10620
CMUR243161 ncbi Chlamydia muridarum Nigg1
CMET456442 ncbi Candidatus Methanoregula boonei 6A80
CMAQ397948 ncbi Caldivirga maquilingensis IC-1671
CJEI306537 ncbi Corynebacterium jeikeium K4111
CHUT269798 ncbi Cytophaga hutchinsonii ATCC 334061
CHOM360107 ncbi Campylobacter hominis ATCC BAA-3811
CGLU196627 ncbi Corynebacterium glutamicum ATCC 130321
CFET360106 ncbi Campylobacter fetus fetus 82-401
CFEL264202 ncbi Chlamydophila felis Fe/C-561
CEFF196164 ncbi Corynebacterium efficiens YS-3140
CDIP257309 ncbi Corynebacterium diphtheriae NCTC 131291
CDES477974 ncbi Candidatus Desulforudis audaxviator MP104C1
CCUR360105 ncbi Campylobacter curvus 525.920
CCON360104 ncbi Campylobacter concisus 138260
CCHL340177 ncbi Chlorobium chlorochromatii CaD31
CCAV227941 ncbi Chlamydophila caviae GPIC1
CABO218497 ncbi Chlamydophila abortus S26/31
BXEN266265 ncbi Burkholderia xenovorans LB4001
BTUR314724 ncbi Borrelia turicatae 91E1350
BTRI382640 ncbi Bartonella tribocorum CIP 1054761
BSP376 Bradyrhizobium sp.1
BLON206672 ncbi Bifidobacterium longum NCC27051
BJAP224911 ncbi Bradyrhizobium japonicum USDA 1101
BHER314723 ncbi Borrelia hermsii DAH0
BHEN283166 ncbi Bartonella henselae Houston-11
BGAR290434 ncbi Borrelia garinii PBi1
BBUR224326 ncbi Borrelia burgdorferi B311
BAFZ390236 ncbi Borrelia afzelii PKo1
AYEL322098 ncbi Aster yellows witches-broom phytoplasma AYWB1
AURANTIMONAS Aurantimonas manganoxydans SI85-9A10
APHA212042 ncbi Anaplasma phagocytophilum HZ0
APER272557 ncbi Aeropyrum pernix K11
AMAR234826 ncbi Anaplasma marginale St. Maries0
ALAI441768 ncbi Acholeplasma laidlawii PG-8A1
AFUL224325 ncbi Archaeoglobus fulgidus DSM 43041
ACAU438753 ncbi Azorhizobium caulinodans ORS 5711


Names of the homologs of the genes in the group in each of these orgs
  G6581   G6580   G6463   EG11345   EG11344   EG11314   EG11111   
ZMOB264203 ZMO1725
XAUT78245 XAUT_4537
WSUC273121 WS0336
WPIP955 WD_0786
WPIP80849 WB_0756
UURE95667 UU402
UURE95664 UUR10_0445
UPAR505682 UPA3_0418
UMET351160
TWHI218496 TW0766
TWHI203267 TW791
TVOL273116 TVN0999
TPEN368408 TPEN_1656
TPAL243276
TLET416591 TLET_1728
TKOD69014 TK0561
TDEN326298 TMDEN_0458
TACI273075 TA0523
SSP84588 SYNW0685OR1968
SSP64471 GSYN0969
SSP387093 SUN_2066
SMAR399550 SMAR_1194
RTYP257363
RSP101510 RHA1_RO04351
RRIC452659
RRIC392021
RPRO272947
RPAL316057 RPD_3056
RMAS416276
RFEL315456 RF_0496
RCON272944 RC0410
RCAN293613 A1E_04020
RBEL391896 A1I_06190
RBEL336407 RBE_0321
RAKA293614
PTOR263820 PTO0816
PMAR93060
PMAR74546
PMAR59920
PMAR167555
PMAR167546
PMAR167542
PMAR167540
PMAR167539 PRO_1114
PMAR146891
PLUT319225 PLUT_0318
PINT246198 PIN_A1153
PHOR70601 PH0852
PGIN242619 PG_1123
PFUR186497 PF0667
PAST100379 PAM125
PACN267747 PPA1385
PABY272844 PAB0829
OTSU357244
NSP387092 NIS_0379
NSEN222891 NSE_0059
NPHA348780 NP1658A
NFAR247156 NFA3660
MVAN350058 MVAN_1040
MTUB419947 MRA_3683
MTUB336982 TBFG_13677
MTHE349307 MTHE_1218
MTBRV RV3648C
MTBCDC MT3750.1
MSYN262723 MS53_0375
MSTA339860 MSP_1247
MSP409 M446_2259
MSP189918 MKMS_2342
MSP164757 MJLS_2334
MSP164756 MMCS_2295
MSME246196 MSMEG_6159
MSED399549 MSED_0018
MPUL272635 MYPU_5580
MPNE272634
MPEN272633 MYPE8250
MMYC272632 MSC_0447
MMOB267748 MMOB4400
MMAZ192952 MM0920
MMAR444158 MMARC6_1684
MMAR426368 MMARC7_0216
MMAR402880
MMAR368407
MMAR267377 MMP0971
MLEP272631 ML0198
MLAB410358
MKAN190192 MK1085
MJAN243232 MJ_0929
MHYO295358 MHP433
MHYO262722 MHP7448_0430
MHYO262719 MHJ_0428
MHUN323259 MHUN_0824
MGIL350054 MFLV_1392
MGEN243273 MG_295
MFLO265311 MFL412
MEXT419610 MEXT_4801
MCAP340047 MCAP_0523
MBUR259564
MBOV410289 BCG_3706C
MBOV233413 MB3672C
MBAR269797 MBAR_A0697
MAVI243243 MAV_0852
MART243272 MART0166
MAEO419665 MAEO_0986
MACE188937 MA3990
MABS561007 MAB_0487
LINT267671 LIC_11815
LINT189518 LA2103
LBOR355277 LBJ_1906
LBOR355276 LBL_1378
HWAL362976 HQ1662A
HSP64091 VNG0415G
HSAL478009 OE1623F
HPYL85963 JHP0028
HPYL357544 HPAG1_0030
HPY HP0032
HMUK485914 HMUK_3158
HMAR272569 RRNAC0192
HHEP235279 HH_1565
HBUT415426 HBUT_1424
HACI382638 HAC_0045
FNOD381764 FNOD_1732
FMAG334413 FMG_1586
ERUM302409
ERUM254945
ECHA205920
ECAN269484
DSP255470 CBDBA767
DSP216389 DEHABAV1_0715
DETH243164 DET_0789
CTRA471473 CTLON_0535
CTRA471472 CTL0539
CTEP194439 CT_0989
CSUL444179
CSP78 CAUL_3135
CPNE182082 CPB0453
CPNE138677 CPJ0438
CPNE115713 CPN0438
CPNE115711 CP_0315
CPEL335992
CMUR243161 TC_0560
CMET456442
CMAQ397948 CMAQ_0020
CJEI306537 JK1955
CHUT269798 CHU_1563
CHOM360107 CHAB381_1113
CGLU196627 CG1615
CFET360106 CFF8240_0710
CFEL264202 CF0653
CEFF196164
CDIP257309 DIP0320
CDES477974 DAUD_1196
CCUR360105
CCON360104
CCHL340177 CAG_0254
CCAV227941 CCA_00354
CABO218497 CAB345
BXEN266265 BXE_B2951
BTUR314724
BTRI382640 BT_0907
BSP376 BRADO4546
BLON206672 BL1800
BJAP224911 BLL5154
BHER314723
BHEN283166 BH06170
BGAR290434 BG0705
BBUR224326 BB_0682
BAFZ390236 BAPKO_0726
AYEL322098 AYWB_597
AURANTIMONAS
APHA212042
APER272557 APE2080
AMAR234826
ALAI441768 ACL_0559
AFUL224325 AF_2242
ACAU438753 AZC_1594


Organism features enriched in list (features available for 164 out of the 175 orgs in the list)
Feature    Pvalue       Num occurrences in list  Total num occurrences  
Arrangment:Chains 2.457e-8692
Arrangment:Pairs 4.138e-810112
Disease:Leptospirosis 0.006097844
Disease:Pharyngitis 0.000034688
Disease:bronchitis_and_pneumonitis 0.000034688
Endospores:No 8.545e-887211
Endospores:Yes 2.179e-7153
GC_Content_Range4:0-40 0.000109879213
GC_Content_Range4:40-60 0.008547052224
GC_Content_Range7:0-30 0.00002902647
GC_Content_Range7:50-60 0.000229816107
Genome_Size_Range5:0-2 4.936e-2797155
Genome_Size_Range5:2-4 0.000210838197
Genome_Size_Range5:4-6 4.267e-1022184
Genome_Size_Range9:0-1 5.156e-82127
Genome_Size_Range9:1-2 1.317e-1776128
Genome_Size_Range9:3-4 0.0001517977
Genome_Size_Range9:4-5 0.00013841396
Genome_Size_Range9:5-6 9.154e-6988
Genome_Size_Range9:6-8 0.0051174438
Gram_Stain:Gram_Neg 0.000623977333
Gram_Stain:Gram_Pos 0.001580629150
Habitat:Host-associated 2.152e-682206
Habitat:Multiple 2.674e-922178
Habitat:Terrestrial 0.0021128231
Motility:No 0.002819755151
Motility:Yes 0.000481358267
Optimal_temp.:37 0.000034047106
Oxygen_Req:Anaerobic 0.000316343102
Oxygen_Req:Facultative 4.849e-1026201
Shape:Coccus 0.00107461282
Shape:Irregular_coccus 1.116e-81617
Shape:Pleomorphic 0.006839768
Shape:Rod 3.397e-771347
Shape:Sphere 3.468e-71619
Shape:Spiral 0.00008422034
Temp._range:Hyperthermophilic 0.00248381323



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ORGANISMS ENRICHED FOR GROUP:




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ORGANISMS DEPLETED FOR GROUP:




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PHYLOGENETIC PROFILE SIMILARITY WITH KNOWN PATHWAYS:

Pathways or complexes with absolute value of Pearson coefficient with respect to candidate larger than 0.4 are listed below
The candidate is assumed to exist in orgs listed in section List of organisms containing most genes from the group


Pathway or complex  # Orgs containing it  # of those orgs also containing candidate  Pearson Coeff  
AST-PWY (arginine degradation II (AST pathway))120940.6793
COBALSYN-PWY (adenosylcobalamin salvage from cobinamide I)1951140.6113
PWY0-1241 (ADP-L-glycero-β-D-manno-heptose biosynthesis)2181200.6033
GLYCOCAT-PWY (glycogen degradation I)2461260.5889
LIPA-CORESYN-PWY (Lipid A-core biosynthesis)1761020.5606
GALACTITOLCAT-PWY (galactitol degradation)73610.5531
KDO-LIPASYN-PWY (KDO2-lipid A biosynthesis I)2251150.5461
PWY-5755 (4-hydroxybenzoate biosynthesis II (bacteria and fungi))81640.5440
PWY-5148 (acyl-CoA hydrolysis)2271120.5172
PWY0-981 (taurine degradation IV)106720.5147
PWY-5918 (heme biosynthesis I)2721230.5128
GLUCONSUPER-PWY (D-gluconate degradation)2291120.5128
PWY0-1182 (trehalose degradation II (trehalase))70560.5092
PWY-5111 (CMP-KDO biosynthesis II (from D-arabinose 5-phosphate))3001290.5092
ENTNER-DOUDOROFF-PWY (Entner-Doudoroff pathway I)2491160.5026
GLYCOLYSIS-E-D (superpathway of glycolysis and Entner-Doudoroff)2491160.5026
PHOSLIPSYN-PWY (phospholipid biosynthesis I)2901250.4955
PWY4FS-7 (phosphatidylglycerol biosynthesis I (plastidic))2911250.4937
PWY0-1319 (CDP-diacylglycerol biosynthesis II)2961260.4927
PWY-4041 (γ-glutamyl cycle)2791220.4919
3-HYDROXYPHENYLACETATE-DEGRADATION-PWY (4-hydroxyphenylacetate degradation)149850.4884
HEME-BIOSYNTHESIS-II (heme biosynthesis from uroporphyrinogen-III I)2861230.4869
ECASYN-PWY (enterobacterial common antigen biosynthesis)191980.4862
PWY0-1329 (succinate to cytochrome bo oxidase electron transfer)96650.4829
PWY-5386 (methylglyoxal degradation I)3051260.4771
PWY-1269 (CMP-KDO biosynthesis I)3251300.4754
GLUTATHIONESYN-PWY (glutathione biosynthesis)3391310.4611
GLUCARDEG-PWY (D-glucarate degradation I)152830.4611
LIPASYN-PWY (phospholipases)2121000.4526
P184-PWY (protocatechuate degradation I (meta-cleavage pathway))94610.4480
NAGLIPASYN-PWY (lipid IVA biosynthesis)3481300.4395
LPSSYN-PWY (superpathway of lipopolysaccharide biosynthesis)91590.4389
PWY0-541 (cyclopropane fatty acid (CFA) biosynthesis)3001190.4308
PWY-5913 (TCA cycle variation IV)3011190.4291
TYRFUMCAT-PWY (tyrosine degradation I)184890.4269
THREONINE-DEG2-PWY (threonine degradation II)214970.4233
PWY-5861 (superpathway of demethylmenaquinone-8 biosynthesis)50400.4228
PWY-46 (putrescine biosynthesis III)138740.4201
PWY0-1335 (NADH to cytochrome bo oxidase electron transfer)112650.4192
PWY-6196 (serine racemization)102610.4152
GLUTDEG-PWY (glutamate degradation II)194900.4110
PWY-6134 (tyrosine biosynthesis IV)89550.4030
BETSYN-PWY (glycine betaine biosynthesis I (Gram-negative bacteria))138720.4013
GLUCARGALACTSUPER-PWY (superpathway of D-glucarate and D-galactarate degradation)135710.4010
CHOLINE-BETAINE-ANA-PWY (choline degradation I)135710.4010



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PAIRWISE GENOME CONTEXT SCORE MATRIX:

  G6580   G6463   EG11345   EG11344   EG11314   EG11111   
G65810.9990270.9987170.9991960.9991380.9987440.99866
G65800.9988180.9994720.9996640.9993390.9986
G64630.9991230.9990620.9987380.999702
EG113450.9996960.9996640.998824
EG113440.9996110.998748
EG113140.99854
EG11111



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PAIRWISE BLAST SCORES:

  G6581   G6580   G6463   EG11345   EG11344   EG11314   EG11111   
G65810.0f0------
G6580-0.0f0-----
G6463--0.0f0----
EG11345---0.0f0---
EG11344----0.0f0--
EG11314-----0.0f0-
EG11111------0.0f0



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PATHWAYS OR PROTEIN COMPLEX MATCHES IN TARGET ORG:

For each case, all genes involved in the pathway or complex are listed. For each gene we list: a tag indicating whether the gene is part of the candidate list or not, the average and the minimum scores of the gene to the candidate list, the gene name, and its product names.



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GENOME CONTEXT INFORMATION:

Each row corresponds to a replicon in an organism, each column to a gene in the candidate. The second column indicates whether the organims was included in the list used to compute the genome context scores or not. Some organisms are not included because they are phylogenetically too similar to others already in the list.
The number in the matrix indicate the position of the homolog of the gene in the replicon. All numbers are relative to the smaller one, which is assigned a position of zero. Two columns with the same number indicate that the two genes matched the same gene in that organism.

Genome browser links for gene clusters

The links below opens a genome browser BioCyc page for each cluster of genes in the target genome. These pages shows the central gene of the cluster in the target genome and its best homolog in the reference genomes, for the genomes that contain homologs for at least 75% of the genes in the group. Only one genome per phylogenetic cluster of organisms is shown, to keep the list smaller.

EG11314 EG11344 EG11345 G6580 G6581 (centered at EG11344)
EG11111 G6463 (centered at G6463)


ORG:REPLICON:CIRC?\GENE  IN REF LIST  G6581   G6580   G6463   EG11345   EG11344   EG11314   EG11111   
336/623233/623279/623124/623387/623407/623216/623
AAEO224324:0:Tyes9220---315-
AAUR290340:2:Tyes-----26640
AAVE397945:0:Tyes02392936-23912339-
ABAC204669:0:Tyes2800---16132857
ABAU360910:0:Tyes--0-59561
ABOR393595:0:Tyes731112010
ABUT367737:0:Tyes--1432-0--
ACAU438753:0:Tyes--0----
ACEL351607:0:Tyes0-455----
ACRY349163:8:Tyes--0--479-
ADEH290397:0:Tyes-9980--321199
AEHR187272:0:Tyes0358356360359266-
AFER243159:0:Tyes-17517491362159401683
AFUL224325:0:Tyes-----0-
AHYD196024:0:Tyes43435120434
ALAI441768:0:Tyes----0--
AMAR329726:9:Tyes193---3900-
AMET293826:0:Tyes1009---2005-0
ANAE240017:0:Tyes-0---137-
AORE350688:0:Tyes687---0-1140
APER272557:0:Tyes-0-----
APLE416269:0:Tyes0242-73970738-
APLE434271:0:Tno0248-71169710-
ASAL382245:5:Tyes4310201201021
ASP1667:3:Tyes-346---35970
ASP232721:2:Tyes64621980-21922149-
ASP62928:0:Tyes2141912246-19100247
ASP62977:0:Tyes032169303129-
ASP76114:2:Tyes01692215-1674252217
AVAR240292:3:Tyes0---3722--
AYEL322098:4:Tyes----0--
BABO262698:1:Tno-0464--168-
BAFZ390236:2:Fyes----0--
BAMB339670:3:Tno22291962223-1951640
BAMB398577:3:Tno1885311878-3001879
BAMY326423:0:Tyes1442---17730-
BANT260799:0:Tno1136---40240-
BANT261594:2:Tno----39950-
BANT568206:2:Tyes2726---42200-
BANT592021:2:Tno1157---42090-
BAPH198804:0:Tyes----01216
BAPH372461:0:Tyes----0-139
BBAC264462:0:Tyes18488780--624-
BBAC360095:0:Tyes--0--258-
BBRO257310:0:Tyes--70-0369
BBUR224326:21:Fno----0--
BCAN483179:1:Tno-0492--174-
BCEN331271:2:Tno1757331751-3201752
BCEN331272:3:Tyes1856331850-3201851
BCER226900:1:Tyes11293278--39830-
BCER288681:0:Tno----38880-
BCER315749:1:Tyes8863108--27000-
BCER405917:1:Tyes----39390-
BCER572264:1:Tno1106---40490-
BCIC186490:0:Tyes----1521530
BCLA66692:0:Tyes250---0--
BFRA272559:1:Tyes----02423-
BFRA295405:0:Tno----02648-
BGAR290434:2:Fyes----0--
BHAL272558:0:Tyes974---6550-
BHEN283166:0:Tyes--0----
BJAP224911:0:Fyes--0----
BLIC279010:0:Tyes18363647--22361160
BLON206672:0:Tyes-----0-
BMAL243160:1:Tno016591575-165817262047
BMAL320388:1:Tno4041294-080293
BMAL320389:1:Tyes023561974-235524382983
BMEL224914:1:Tno--0--310-
BMEL359391:1:Tno-0448--162-
BOVI236:1:Tyes-0422--161-
BPAR257311:0:Tno--70-0369
BPER257313:0:Tyes--0-1201171
BPET94624:0:Tyes--0-69661
BPSE272560:1:Tyes020094-201020492200
BPSE320372:1:Tno023795-238024242599
BPSE320373:1:Tno023054-230623542543
BPUM315750:0:Tyes1452---17910-
BQUI283165:0:Tyes--0--36-
BSP107806:2:Tyes---102225
BSP36773:2:Tyes2147342141-3302142
BSP376:0:Tyes--0----
BSUB:0:Tyes1764---22080-
BSUI204722:1:Tyes-0489--175-
BSUI470137:1:Tno-0504--182-
BTHA271848:1:Tno04924-4914552131
BTHE226186:0:Tyes----03791-
BTHU281309:1:Tno1077---38340-
BTHU412694:1:Tno1024---35510-
BTRI382640:1:Tyes--0----
BVIE269482:7:Tyes1954321948-3101949
BWEI315730:4:Tyes1150---391103277
BXEN266265:1:Tyes------0
CABO218497:0:Tyes----0--
CACE272562:1:Tyes--1011-1413-0
CAULO:0:Tyes0362272----
CBEI290402:0:Tyes--2983-0--
CBLO203907:0:Tyes----01-
CBLO291272:0:Tno----0157
CBOT36826:1:Tno0---1101--
CBOT441770:0:Tyes0---1098--
CBOT441771:0:Tno0---1022--
CBOT441772:1:Tno0---1122--
CBOT498213:1:Tno0---1182--
CBOT508765:1:Tyes501---0--
CBOT515621:2:Tyes0---1151--
CBOT536232:0:Tno01197--1296--
CBUR227377:1:Tyes----3020-
CBUR360115:1:Tno----1580-
CBUR434922:2:Tno----3410-
CCAV227941:1:Tyes----0--
CCHL340177:0:Tyes----0--
CDES477974:0:Tyes0------
CDIF272563:1:Tyes0---906-982
CDIP257309:0:Tyes------0
CFEL264202:1:Tyes----0--
CFET360106:0:Tyes--0----
CGLU196627:0:Tyes0------
CHOM360107:1:Tyes--0----
CHUT269798:0:Tyes-----0-
CHYD246194:0:Tyes843---10960-
CJAP155077:0:Tyes8708476885
CJEI306537:0:Tyes------0
CJEJ192222:0:Tyes--1044--0-
CJEJ195099:0:Tno--1188--0-
CJEJ354242:2:Tyes--1030--0-
CJEJ360109:0:Tyes--548--0-
CJEJ407148:0:Tno--1060--0-
CKLU431943:1:Tyes474-1241-0--
CKOR374847:0:Tyes-0---1026-
CMAQ397948:0:Tyes-----0-
CMIC31964:2:Tyes-----14060
CMIC443906:2:Tyes-----13680
CMUR243161:1:Tyes----0--
CNOV386415:0:Tyes0---189--
CPER195102:1:Tyes0---704--
CPER195103:0:Tno0---687--
CPER289380:3:Tyes0---598--
CPHY357809:0:Tyes----2327-0
CPNE115711:1:Tyes----0--
CPNE115713:0:Tno----0--
CPNE138677:0:Tno----0--
CPNE182082:0:Tno----0--
CPRO264201:0:Fyes-0--1340--
CPSY167879:0:Tyes4507681
CRUT413404:0:Tyes--15810231-
CSAL290398:0:Tyes7887897877917907920
CSP501479:6:Fyes0------
CSP501479:8:Fyes--0--2266-
CSP78:2:Tyes--0----
CTEP194439:0:Tyes-----0-
CTET212717:0:Tyes0---132--
CTRA471472:0:Tyes----0--
CTRA471473:0:Tno----0--
CVES412965:0:Tyes---10188-
CVIO243365:0:Tyes2750280-1447279
DARO159087:0:Tyes1612021-2001970
DDES207559:0:Tyes0-144----
DETH243164:0:Tyes0------
DGEO319795:1:Tyes-1340779-1040-
DHAF138119:0:Tyes18840---3544-
DNOD246195:0:Tyes4350506478477517-
DOLE96561:0:Tyes--638--0-
DPSY177439:2:Tyes--0---74
DRAD243230:3:Tyes345036-1190--
DRED349161:0:Tyes372---01603-
DSHI398580:5:Tyes1073----0-
DSP216389:0:Tyes0------
DSP255470:0:Tno0------
DVUL882:1:Tyes676370----
ECAR218491:0:Tyes01217324219
ECOL199310:0:Tno47747614744754730
ECOL316407:0:Tno25525412522532510
ECOL331111:6:Tno33133013283293270
ECOL362663:0:Tno23423312312322300
ECOL364106:1:Tno37937823763773750
ECOL405955:2:Tyes2632620260261259-
ECOL409438:6:Tyes26626512632642620
ECOL413997:0:Tno25024912472482460
ECOL439855:4:Tno01285324286
ECOL469008:0:Tno01251324252
ECOL481805:0:Tno01247324248
ECOL585034:0:Tno25325212502512490
ECOL585035:0:Tno23923812362372350
ECOL585055:0:Tno32532413223233210
ECOL585056:2:Tno30530413023033010
ECOL585057:0:Tno01269324271
ECOL585397:0:Tno43643514334344320
ECOL83334:0:Tno65165016486496470
ECOLI:0:Tno25625512532542520
ECOO157:0:Tno70870717057067040
EFAE226185:3:Tyes734787--121414940
EFER585054:1:Tyes75875917617607620
ELIT314225:0:Tyes0-520----
ESP42895:1:Tyes25325212502512490
FALN326424:0:Tyes15931798858--59090
FJOH376686:0:Tyes0-3464-23474971-
FMAG334413:1:Tyes----0--
FNOD381764:0:Tyes------0
FNUC190304:0:Tyes0---9--
FPHI484022:1:Tyes-0--367--
FRANT:0:Tno-0--1196--
FSP106370:0:Tyes12072978612--41210
FSP1855:0:Tyes477770235375--06290
FSUC59374:0:Tyes0---491--
FTUL351581:0:Tno-346--0--
FTUL393011:0:Tno-317--0--
FTUL393115:0:Tyes-0--1176--
FTUL401614:0:Tyes-371--0--
FTUL418136:0:Tno-0--205--
FTUL458234:0:Tno-343--0--
GBET391165:0:Tyes0-1190--1199-
GFOR411154:0:Tyes862---11300-
GKAU235909:1:Tyes0686--280--
GMET269799:1:Tyes10100--67017491059
GOXY290633:5:Tyes--0--1682-
GSUL243231:0:Tyes12400--24031468423
GTHE420246:1:Tyes19372625--22180-
GURA351605:0:Tyes110---05692505
GVIO251221:0:Tyes838-198-0--
HACI382638:1:Tyes--0----
HARS204773:0:Tyes2010132008-1202009
HAUR316274:2:Tyes07222432-562475-
HBUT415426:0:Tyes-0-----
HCHE349521:0:Tyes4371206
HDUC233412:0:Tyes0--1140451139-
HHAL349124:0:Tyes556-1385138913880-
HHEP235279:0:Tyes--0----
HINF281310:0:Tyes512--45404551293
HINF374930:0:Tyes686--753-7520
HINF71421:0:Tno509--45304541233
HMAR272569:8:Tyes-----0-
HMOD498761:0:Tyes31---01265-
HMUK485914:1:Tyes-----0-
HNEP81032:0:Tyes345-0----
HPY:0:Tno--0----
HPYL357544:1:Tyes--0----
HPYL85963:0:Tno--0----
HSAL478009:4:Tyes-----0-
HSOM205914:1:Tyes779778-7338227320
HSOM228400:0:Tno14011400-014341926
HSP64091:2:Tno-----0-
HWAL362976:1:Tyes-----0-
IHOS453591:0:Tyes-523---0-
ILOI283942:0:Tyes657-06596586601
JSP290400:1:Tyes0-2233----
JSP375286:0:Tyes2193152191-1402192
KPNE272620:2:Tyes4351931205192
KRAD266940:2:Fyes1199----0672
LACI272621:0:Tyes132---01012-
LBIF355278:2:Tyes--508-0--
LBIF456481:2:Tno-1236518-0--
LBOR355276:1:Tyes--0----
LBOR355277:1:Tno--0----
LBRE387344:2:Tyes521561--11400-
LCAS321967:1:Tyes10610--986820-
LCHO395495:0:Tyes-01240-337121239
LDEL321956:0:Tyes----0545-
LDEL390333:0:Tyes-0--224711-
LGAS324831:0:Tyes-386--7620-
LHEL405566:0:Tyes4340--3061170-
LINN272626:1:Tno542---0--
LINT189518:1:Tyes--0----
LINT267671:1:Tno--0----
LINT363253:3:Tyes251-0--380-
LJOH257314:0:Tyes----3850-
LLAC272622:5:Tyes12281461--67815330
LLAC272623:0:Tyes1184---66914730
LMES203120:1:Tyes0----9541423
LMON169963:0:Tno464---0--
LMON265669:0:Tyes443---0--
LPLA220668:0:Tyes0---2451133-
LPNE272624:0:Tno387-390-9613740
LPNE297245:1:Fno379-382-8683660
LPNE297246:1:Fyes381-384-8503680
LPNE400673:0:Tno1642-1639-016552068
LREU557436:0:Tyes6611556--5110-
LSAK314315:0:Tyes254---257940
LSPH444177:1:Tyes11430--3183--
LWEL386043:0:Tyes450---0--
LXYL281090:0:Tyes0----1616-
MABS561007:1:Tyes------0
MACE188937:0:Tyes-0-----
MAEO419665:0:Tyes-----0-
MAER449447:0:Tyes0---3117--
MAQU351348:2:Tyes2305461
MART243272:0:Tyes----0--
MAVI243243:0:Tyes------0
MBAR269797:1:Tyes-0-----
MBOV233413:0:Tno------0
MBOV410289:0:Tno------0
MCAP243233:0:Tyes33014891491014881487-
MCAP340047:0:Tyes----0--
MEXT419610:0:Tyes--0----
MFLA265072:0:Tyes162616020-160313071628
MFLO265311:0:Tyes----0--
MGEN243273:0:Tyes----0--
MGIL350054:3:Tyes------0
MHUN323259:0:Tyes-----0-
MHYO262719:0:Tyes----0--
MHYO262722:0:Tno----0--
MHYO295358:0:Tno----0--
MJAN243232:2:Tyes-----0-
MKAN190192:0:Tyes-----0-
MLEP272631:0:Tyes------0
MLOT266835:2:Tyes1649-478--0-
MMAG342108:0:Tyes13503070--1930-
MMAR267377:0:Tyes-----0-
MMAR394221:0:Tyes--248--0-
MMAR426368:0:Tyes-----0-
MMAR444158:0:Tyes-----0-
MMAZ192952:0:Tyes-0-----
MMOB267748:0:Tyes----0--
MMYC272632:0:Tyes----0--
MPEN272633:0:Tyes----0--
MPET420662:1:Tyes-11040-110311611
MPUL272635:0:Tyes----0--
MSED399549:0:Tyes-----0-
MSME246196:0:Tyes------0
MSP164756:1:Tno------0
MSP164757:0:Tno------0
MSP189918:2:Tyes------0
MSP266779:3:Tyes--88--0-
MSP400668:0:Tyes-204361
MSP409:2:Tyes--0----
MSTA339860:0:Tyes-----0-
MSUC221988:0:Tyes21152114-140833
MSYN262723:0:Tyes----0--
MTBCDC:0:Tno------0
MTBRV:0:Tno------0
MTHE187420:0:Tyes-0---201-
MTHE264732:0:Tyes0---287683-
MTHE349307:0:Tyes-----0-
MTUB336982:0:Tno------0
MTUB419947:0:Tyes------0
MVAN350058:0:Tyes------0
MXAN246197:0:Tyes887-5174--13560
NARO279238:0:Tyes2659-0--818-
NEUR228410:0:Tyes-01570-79317951569
NEUT335283:2:Tyes191501759-20471491758
NFAR247156:2:Tyes------0
NGON242231:0:Tyes--0-72111801
NHAM323097:2:Tyes71215030----
NMEN122586:0:Tno1163-537-12220538
NMEN122587:0:Tyes--0-65411141
NMEN272831:0:Tno--449-10380450
NMEN374833:0:Tno--0-65610511
NMUL323848:3:Tyes-36-205
NOCE323261:1:Tyes--3921066-
NPHA348780:2:Tyes-----0-
NSEN222891:0:Tyes-----0-
NSP103690:6:Tyes02431--817--
NSP35761:1:Tyes0-----1773
NSP387092:0:Tyes--0----
NWIN323098:0:Tyes864-0--475-
OANT439375:5:Tyes-6050--363-
OCAR504832:0:Tyes-11600----
OIHE221109:0:Tyes----12960-
PABY272844:0:Tyes-----0-
PACN267747:0:Tyes0------
PAER178306:0:Tyes-668---0-
PAER208963:0:Tyes0143714411435143614331440
PAER208964:0:Tno1365406581
PARC259536:0:Tyes0-1215-9589591570
PARS340102:0:Tyes-1928---0-
PAST100379:0:Tyes----0--
PATL342610:0:Tyes3-05461
PCAR338963:0:Tyes0-973-5701360-
PCRY335284:1:Tyes0-1358-8328301813
PDIS435591:0:Tyes----530-
PENT384676:0:Tyes2447371206
PFLU205922:0:Tyes1378406571
PFLU216595:1:Tyes1533406571
PFLU220664:0:Tyes1499406571
PFUR186497:0:Tyes-----0-
PGIN242619:0:Tyes-----0-
PHAL326442:1:Tyes0-3632437
PHOR70601:0:Tyes-----0-
PING357804:0:Tyes232-0213214212-
PINT246198:1:Tyes-----0-
PISL384616:0:Tyes-554---0-
PLUM243265:0:Fyes1221122211224122312250
PLUT319225:0:Tyes----0--
PMAR167539:0:Tyes0------
PMAR74547:0:Tyes831---0--
PMEN399739:0:Tyes1362406581
PMOB403833:0:Tyes133----0-
PMUL272843:1:Tyes11241123-136985513700
PNAP365044:8:Tyes02485605-24992596-
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