CANDIDATE ID: 288

CANDIDATE ID: 288

NUMBER OF GENES: 7
AVERAGE SCORE:    9.9926738e-1 (range=[0.0,1.0])
AVERAGE MINIMUM BLAST P-VAL:    1.0000000e+0

Gene List
List of organisms containing most genes from the group
    Phylogenetic tree highlighting these organisms (opens new page)
List of organisms containing very few or no genes from the group
List of organisms enriched for group
List of organisms depleted for group
Phylogenetic profile similarity with known pathways
Pairwise genome context scores
Pairwise Blast scores
Pathway or protein complex matches in target organism
Genome context matrix
    Genes and their orthologs in genome browser BioCyc pages



GENE LIST:

- G7529 (yggU) (b2953)
   Products of gene:
     - G7529-MONOMER (conserved protein)

- G7528 (yggT) (b2952)
   Products of gene:
     - G7528-MONOMER (predicted inner membrane protein)

- G7527 (yggS) (b2951)
   Products of gene:
     - G7527-MONOMER (predicted enzyme)

- G7526 (yggR) (b2950)
   Products of gene:
     - G7526-MONOMER (predicted transporter)

- G7525 (yqgF) (b2949)
   Products of gene:
     - G7525-MONOMER (predicted Holliday junction resolvase)

- G7524 (yqgE) (b2948)
   Products of gene:
     - G7524-MONOMER (predicted protein)

- EG10769 (proC) (b0386)
   Products of gene:
     - PYRROLINECARBREDUCT-MONOMER (pyrroline-5-carboxylate reductase monomer)
     - PYRROLINECARBREDUCT-CPLX (pyrroline-5-carboxylate reductase)
       Reactions:
        NAD(P)H + (S)-1-pyrroline-5-carboxylate + 2 H+  ->  NAD(P)+ + L-proline
         In pathways
         ARGORNPROST-PWY (ARGORNPROST-PWY)
         PWY-3341 (PWY-3341)
         PWY-4981 (PWY-4981)
         ARG-PRO-PWY (ARG-PRO-PWY)
         PROSYN-PWY (proline biosynthesis I)
         PWY-6344 (PWY-6344)



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ORGANISMS CONTAINING AT LEAST 6 GENES FROM THE GROUP:

Total number of orgs: 139
Effective number of orgs (counting one per cluster within 468 clusters): 98

Organism list
Homologs in each organism in the list
Features enriched in organism list


Follow (ncbi) link, when present, to find the set of organism features for each organism
Org ID  Org Name  # genes in group found in org  
YPSE349747 ncbi Yersinia pseudotuberculosis IP 317587
YPSE273123 ncbi Yersinia pseudotuberculosis IP 329537
YPES386656 ncbi Yersinia pestis Pestoides F7
YPES377628 ncbi Yersinia pestis Nepal5167
YPES360102 ncbi Yersinia pestis Antiqua7
YPES349746 ncbi Yersinia pestis Angola7
YPES214092 ncbi Yersinia pestis CO927
YPES187410 ncbi Yersinia pestis KIM 107
YENT393305 ncbi Yersinia enterocolitica enterocolitica 80817
VVUL216895 ncbi Vibrio vulnificus CMCP67
VVUL196600 ncbi Vibrio vulnificus YJ0167
VPAR223926 ncbi Vibrio parahaemolyticus RIMD 22106337
VFIS312309 ncbi Vibrio fischeri ES1147
VEIS391735 ncbi Verminephrobacter eiseniae EF01-26
VCHO345073 ncbi Vibrio cholerae O3957
VCHO ncbi Vibrio cholerae O1 biovar El Tor str. N169617
TTUR377629 ncbi Teredinibacter turnerae T79017
TDEN292415 ncbi Thiobacillus denitrificans ATCC 252597
TCRU317025 ncbi Thiomicrospira crunogena XCL-26
SWOL335541 ncbi Syntrophomonas wolfei wolfei Goettingen6
STYP99287 ncbi Salmonella enterica enterica serovar Typhimurium str. LT27
SSP94122 ncbi Shewanella sp. ANA-37
SSON300269 ncbi Shigella sonnei Ss0467
SSED425104 ncbi Shewanella sediminis HAW-EB37
SPRO399741 ncbi Serratia proteamaculans 5687
SPEA398579 ncbi Shewanella pealeana ATCC 7003457
SONE211586 ncbi Shewanella oneidensis MR-17
SLOI323850 ncbi Shewanella loihica PV-47
SHIGELLA ncbi Shigella flexneri 2a str. 2457T7
SHAL458817 ncbi Shewanella halifaxensis HAW-EB47
SGLO343509 ncbi Sodalis glossinidius morsitans6
SFLE373384 ncbi Shigella flexneri 5 str. 84017
SFLE198214 ncbi Shigella flexneri 2a str. 3017
SENT454169 ncbi Salmonella enterica enterica serovar Heidelberg str. SL4767
SENT321314 ncbi Salmonella enterica enterica serovar Choleraesuis str. SC-B677
SENT295319 ncbi Salmonella enterica enterica serovar Paratyphi A str. ATCC 91507
SENT220341 ncbi Salmonella enterica enterica serovar Typhi str. CT187
SENT209261 ncbi Salmonella enterica enterica serovar Typhi str. Ty27
SDYS300267 ncbi Shigella dysenteriae Sd1977
SDEN318161 ncbi Shewanella denitrificans OS2176
SDEG203122 ncbi Saccharophagus degradans 2-406
SBOY300268 ncbi Shigella boydii Sb2277
SBAL402882 ncbi Shewanella baltica OS1857
SBAL399599 ncbi Shewanella baltica OS1957
SACI56780 ncbi Syntrophus aciditrophicus SB6
RSOL267608 ncbi Ralstonia solanacearum GMI10006
RMET266264 ncbi Ralstonia metallidurans CH346
RFER338969 ncbi Rhodoferax ferrireducens T1187
REUT381666 ncbi Ralstonia eutropha H166
REUT264198 ncbi Ralstonia eutropha JMP1346
PTHE370438 ncbi Pelotomaculum thermopropionicum SI6
PSYR223283 ncbi Pseudomonas syringae pv. tomato str. DC30006
PSYR205918 ncbi Pseudomonas syringae pv. syringae B728a6
PSTU379731 ncbi Pseudomonas stutzeri A15016
PSP56811 Psychrobacter sp.6
PSP296591 ncbi Polaromonas sp. JS6667
PPUT76869 ncbi Pseudomonas putida GB-16
PPUT351746 ncbi Pseudomonas putida F16
PPUT160488 ncbi Pseudomonas putida KT24406
PPRO298386 ncbi Photobacterium profundum SS97
PNAP365044 ncbi Polaromonas naphthalenivorans CJ27
PMUL272843 ncbi Pasteurella multocida multocida Pm706
PMEN399739 ncbi Pseudomonas mendocina ymp7
PLUM243265 ncbi Photorhabdus luminescens laumondii TTO16
PING357804 ncbi Psychromonas ingrahamii 377
PHAL326442 ncbi Pseudoalteromonas haloplanktis TAC1256
PFLU220664 ncbi Pseudomonas fluorescens Pf-57
PFLU216595 ncbi Pseudomonas fluorescens SBW256
PFLU205922 ncbi Pseudomonas fluorescens Pf0-17
PENT384676 ncbi Pseudomonas entomophila L486
PCRY335284 ncbi Psychrobacter cryohalolentis K56
PATL342610 ncbi Pseudoalteromonas atlantica T6c7
PARC259536 ncbi Psychrobacter arcticus 273-46
PAER208964 ncbi Pseudomonas aeruginosa PAO16
PAER208963 ncbi Pseudomonas aeruginosa UCBPP-PA147
NSP103690 ncbi Nostoc sp. PCC 71206
NOCE323261 ncbi Nitrosococcus oceani ATCC 197077
NMUL323848 ncbi Nitrosospira multiformis ATCC 251966
NEUT335283 ncbi Nitrosomonas eutropha C916
NEUR228410 ncbi Nitrosomonas europaea ATCC 197187
MFLA265072 ncbi Methylobacillus flagellatus KT6
MCAP243233 ncbi Methylococcus capsulatus Bath6
MAQU351348 ncbi Marinobacter aquaeolei VT86
LPNE297246 ncbi Legionella pneumophila Paris6
LPNE297245 ncbi Legionella pneumophila Lens6
LPNE272624 ncbi Legionella pneumophila pneumophila Philadelphia 16
LCHO395495 ncbi Leptothrix cholodnii SP-66
KPNE272620 ncbi Klebsiella pneumoniae pneumoniae MGH 785787
JSP375286 ncbi Janthinobacterium sp. Marseille6
ILOI283942 ncbi Idiomarina loihiensis L2TR6
HSOM228400 ncbi Haemophilus somnus 23366
HSOM205914 ncbi Haemophilus somnus 129PT6
HHAL349124 ncbi Halorhodospira halophila SL17
HCHE349521 ncbi Hahella chejuensis KCTC 23967
HARS204773 ncbi Herminiimonas arsenicoxydans6
ESP42895 Enterobacter sp.7
EFER585054 ncbi Escherichia fergusonii ATCC 354697
ECOO157 ncbi Escherichia coli O157:H7 EDL9337
ECOL83334 Escherichia coli O157:H77
ECOL585397 ncbi Escherichia coli ED1a7
ECOL585057 ncbi Escherichia coli IAI397
ECOL585056 ncbi Escherichia coli UMN0267
ECOL585055 ncbi Escherichia coli 559897
ECOL585035 ncbi Escherichia coli S887
ECOL585034 ncbi Escherichia coli IAI17
ECOL481805 ncbi Escherichia coli ATCC 87397
ECOL469008 ncbi Escherichia coli BL21(DE3)7
ECOL439855 ncbi Escherichia coli SMS-3-57
ECOL413997 ncbi Escherichia coli B str. REL6067
ECOL409438 ncbi Escherichia coli SE117
ECOL405955 ncbi Escherichia coli APEC O17
ECOL364106 ncbi Escherichia coli UTI897
ECOL362663 ncbi Escherichia coli 5367
ECOL331111 ncbi Escherichia coli E24377A7
ECOL316407 ncbi Escherichia coli K-12 substr. W31107
ECOL199310 ncbi Escherichia coli CFT0737
ECAR218491 ncbi Pectobacterium atrosepticum SCRI10437
DRED349161 ncbi Desulfotomaculum reducens MI-16
DPSY177439 ncbi Desulfotalea psychrophila LSv546
DOLE96561 ncbi Desulfococcus oleovorans Hxd36
DARO159087 ncbi Dechloromonas aromatica RCB7
CVIO243365 ncbi Chromobacterium violaceum ATCC 124726
CSAL290398 ncbi Chromohalobacter salexigens DSM 30436
CPSY167879 ncbi Colwellia psychrerythraea 34H6
CJAP155077 Cellvibrio japonicus7
CBUR434922 ncbi Coxiella burnetii Dugway 5J108-1116
AVAR240292 ncbi Anabaena variabilis ATCC 294136
ASP76114 ncbi Aromatoleum aromaticum EbN17
ASP62977 ncbi Acinetobacter sp. ADP16
ASP62928 ncbi Azoarcus sp. BH727
ASP232721 ncbi Acidovorax sp. JS426
ASAL382245 ncbi Aeromonas salmonicida salmonicida A4497
APLE416269 ncbi Actinobacillus pleuropneumoniae L206
AHYD196024 Aeromonas hydrophila dhakensis7
AFER243159 ncbi Acidithiobacillus ferrooxidans ATCC 232707
AEHR187272 ncbi Alkalilimnicola ehrlichii MLHE-16
ADEH290397 ncbi Anaeromyxobacter dehalogenans 2CP-C6
ABOR393595 ncbi Alcanivorax borkumensis SK26
AAVE397945 ncbi Acidovorax citrulli AAC00-16


Names of the homologs of the genes in the group in each of these orgs
  G7529   G7528   G7527   G7526   G7525   G7524   EG10769   
YPSE349747 YPSIP31758_0827YPSIP31758_0828YPSIP31758_0830YPSIP31758_0831YPSIP31758_0834YPSIP31758_0835YPSIP31758_0829
YPSE273123 YPTB3216YPTB3215YPTB3213YPTB3212YPTB3209YPTB3208YPTB3214
YPES386656 YPDSF_0571YPDSF_0572YPDSF_0574YPDSF_0575YPDSF_0578YPDSF_0579YPDSF_0573
YPES377628 YPN_3141YPN_3140YPN_3138YPN_3137YPN_3134YPN_3133YPN_3139
YPES360102 YPA_0321YPA_0322YPA_0324YPA_0325YPA_0328YPA_0329YPA_0323
YPES349746 YPANGOLA_A0141YPANGOLA_A0140YPANGOLA_A0138YPANGOLA_A3337YPANGOLA_A3340YPANGOLA_A3341YPANGOLA_A0139
YPES214092 YPO0944YPO0943YPO0941YPO0940YPO0937YPO0936YPO0942
YPES187410 Y3330Y3329Y3327Y3326Y3323Y3322Y3328
YENT393305 YE3436YE3435YE3433YE3432YE3429YE3428YE3434
VVUL216895 VV1_1522VV1_1523VV1_1525VV1_1526VV1_1528VV1_1529VV1_1524
VVUL196600 VV2877VV2876VV2873VV2874VV2870VV2869VV2875
VPAR223926 VP2619VP2618VP2616VP2615VP2613VP2612VP2617
VFIS312309 VF0427VF0428VF0430VF0431VF0433VF0434VF0429
VEIS391735 VEIS_4865VEIS_1687VEIS_1688VEIS_1516VEIS_1517VEIS_2325
VCHO345073 VC0395_A0010VC0395_A0011VC0395_A0013VC0395_A0014VC0395_A0018VC0395_A0019VC0395_A0012
VCHO VC0458VC0459VC0461VC0462VC0466VC0467VC0460
TTUR377629 TERTU_0220TERTU_0221TERTU_0223TERTU_0225TERTU_0227TERTU_0228TERTU_0222
TDEN292415 TBD_2620TBD_2416TBD_0668TBD_2419TBD_2580TBD_2579TBD_2417
TCRU317025 TCR_1838TCR_1834TCR_1750TCR_1828TCR_1827TCR_1837
SWOL335541 SWOL_0959SWOL_0956SWOL_0953SWOL_0532SWOL_0470SWOL_0955
STYP99287 STM3102STM3101STM3100STM3099STM3097STM3096STM0386
SSP94122 SHEWANA3_1191SHEWANA3_1192SHEWANA3_1194SHEWANA3_1195SHEWANA3_1199SHEWANA3_1200SHEWANA3_1193
SSON300269 SSO_3107SSO_3106SSO_3104SSO_3105SSO_3103SSO_3102SSO_0362
SSED425104 SSED_1229SSED_1230SSED_1232SSED_1233SSED_1236SSED_1237SSED_1231
SPRO399741 SPRO_4033SPRO_4032SPRO_4030SPRO_4029SPRO_4028SPRO_4027SPRO_4031
SPEA398579 SPEA_1124SPEA_1125SPEA_1127SPEA_1128SPEA_1131SPEA_1132SPEA_1126
SONE211586 SO_3356SO_3355SO_3352SO_3351SO_3347SO_3346SO_3354
SLOI323850 SHEW_1134SHEW_1135SHEW_1137SHEW_1138SHEW_1143SHEW_1144SHEW_1136
SHIGELLA YGGUYGGTYGGSYGGRYQGFYQGEPROC
SHAL458817 SHAL_1169SHAL_1170SHAL_1172SHAL_1173SHAL_1176SHAL_1177SHAL_1171
SGLO343509 SG2030SG2029SG2027SG2024SG2023SG2028
SFLE373384 SFV_3007SFV_3006SFV_3005SFV_3004SFV_3003SFV_3002SFV_0351
SFLE198214 AAN44425.1AAN44424.1AAN44423.1AAN44422.1AAN44421.1AAN44420.1AAN41981.1
SENT454169 SEHA_C3341SEHA_C3340SEHA_C3339SEHA_C3338SEHA_C3336SEHA_C3335SEHA_C0483
SENT321314 SCH_3042SCH_3041SCH_3040SCH_3039SCH_3037SCH_3036SCH_0427
SENT295319 SPA2965SPA2964SPA2963SPA2962SPA2960SPA2959SPA2337
SENT220341 STY3255STY3254STY3253STY3252STY3250STY3249STY0419
SENT209261 T3014T3013T3012T3011T3009T3008T2478
SDYS300267 SDY_3119SDY_3120SDY_3122SDY_3121SDY_3123SDY_3124SDY_0356
SDEN318161 SDEN_2684SDEN_2682SDEN_2681SDEN_2673SDEN_2674SDEN_2683
SDEG203122 SDE_3643SDE_3641SDE_3640SDE_3638SDE_3637SDE_3642
SBOY300268 SBO_3037SBO_3038SBO_3040SBO_3039SBO_3041SBO_3042SBO_0282
SBAL402882 SHEW185_3043SHEW185_3042SHEW185_3040SHEW185_3039SHEW185_3035SHEW185_3034SHEW185_3041
SBAL399599 SBAL195_3186SBAL195_3185SBAL195_3183SBAL195_3182SBAL195_3178SBAL195_3177SBAL195_3184
SACI56780 SYN_00105SYN_00106SYN_00571SYN_00125SYN_01734SYN_02197
RSOL267608 RSP1385RSC2683RSC2682RSC0676RSC0675RSC2684
RMET266264 RMET_3642RMET_2937RMET_2936RMET_2742RMET_2743RMET_2938
RFER338969 RFER_0749RFER_1785RFER_3879RFER_3878RFER_1378RFER_1377RFER_3679
REUT381666 H16_B0171H16_A3105H16_A3104H16_A2915H16_A2916H16_A3106
REUT264198 REUT_B5573REUT_A2801REUT_A2800REUT_A0706REUT_A0705REUT_A2802
PTHE370438 PTH_1821PTH_1825PTH_1828PTH_1146PTH_1065PTH_1826
PSYR223283 PSPTO_5048PSPTO_5046PSPTO_5045PSPTO_5038PSPTO_5037PSPTO_5047
PSYR205918 PSYR_0475PSYR_0477PSYR_0478PSYR_0484PSYR_0485PSYR_0476
PSTU379731 PST_3968PST_3966PST_3965PST_3957PST_3956PST_3967
PSP56811 PSYCPRWF_0338PSYCPRWF_1883PSYCPRWF_1884PSYCPRWF_0143PSYCPRWF_0144PSYCPRWF_0337
PSP296591 BPRO_2664BPRO_2699BPRO_0397BPRO_0396BPRO_1143BPRO_1142BPRO_0475
PPUT76869 PPUTGB1_5146PPUTGB1_5144PPUTGB1_5143PPUTGB1_5046PPUTGB1_5045PPUTGB1_5145
PPUT351746 PPUT_4969PPUT_4967PPUT_4966PPUT_4870PPUT_4869PPUT_4968
PPUT160488 PP_5096PP_5094PP_5093PP_4996PP_4995PP_5095
PPRO298386 PBPRA3146PBPRA3145PBPRA3143PBPRA3142PBPRA3140PBPRA3139PBPRA3144
PNAP365044 PNAP_0379PNAP_2437PNAP_0280PNAP_0278PNAP_3347PNAP_3348PNAP_0327
PMUL272843 PM1313PM1314PM0112PM1870PM1869PM0095
PMEN399739 PMEN_4153PMEN_4152PMEN_4150PMEN_4149PMEN_0399PMEN_0400PMEN_4151
PLUM243265 PLU1178PLU1180PLU1181PLU1182PLU1183PLU1179
PING357804 PING_3043PING_3042PING_3040PING_3039PING_1285PING_1286PING_3041
PHAL326442 PSHAA2606PSHAA2604PSHAA2603PSHAA2601PSHAA2600PSHAA2605
PFLU220664 PFL_5841PFL_5840PFL_5838PFL_5837PFL_5831PFL_5830PFL_5839
PFLU216595 PFLU5765PFLU5763PFLU5762PFLU5756PFLU5755PFLU5764
PFLU205922 PFL_5322PFL_5321PFL_5319PFL_5318PFL_5312PFL_5311PFL_5320
PENT384676 PSEEN0316PSEEN0318PSEEN0319PSEEN5059PSEEN5058PSEEN0317
PCRY335284 PCRYO_0178PCRYO_0294PCRYO_0293PCRYO_0061PCRYO_0062PCRYO_0177
PATL342610 PATL_0407PATL_3720PATL_3718PATL_3717PATL_1154PATL_1153PATL_3719
PARC259536 PSYC_0166PSYC_0268PSYC_0267PSYC_0056PSYC_0057PSYC_0165
PAER208964 PA0392PA0394PA0395PA0404PA0405PA0393
PAER208963 PA14_05120PA14_05130PA14_05160PA14_05180PA14_05280PA14_05290PA14_05150
NSP103690 ASL3196ASL2061ALR0486ALL2443ALR3100ALR0488
NOCE323261 NOC_3000NOC_3001NOC_3003NOC_3004NOC_0367NOC_0368NOC_3002
NMUL323848 NMUL_A0579NMUL_A0580NMUL_A2732NMUL_A2479NMUL_A2478NMUL_A0581
NEUT335283 NEUT_2146NEUT_2147NEUT_2339NEUT_2338NEUT_0449NEUT_0448
NEUR228410 NE0395NE0394NE0966NE0965NE1667NE1668NE0393
MFLA265072 MFLA_2110MFLA_2108MFLA_2107MFLA_2100MFLA_2099MFLA_2109
MCAP243233 MCA_1534MCA_1536MCA_1537MCA_2335MCA_2336MCA_1535
MAQU351348 MAQU_0534MAQU_0536MAQU_0537MAQU_3763MAQU_3764MAQU_0535
LPNE297246 PLPP0102LPP1998LPP1996LPP1995LPP0637LPP0636
LPNE297245 LPL2644LPL1993LPL1991LPL1990LPL0621LPL0620
LPNE272624 LPG2716LPG2016LPG2014LPG2013LPG0587LPG0586
LCHO395495 LCHO_0384LCHO_1630LCHO_1631LCHO_3961LCHO_3962LCHO_1627
KPNE272620 GKPORF_B2732GKPORF_B2731GKPORF_B2730GKPORF_B2729GKPORF_B2727GKPORF_B2726GKPORF_B4655
JSP375286 MMA_2976MMA_0341MMA_0340MMA_2949MMA_2950MMA_0342
ILOI283942 IL1976IL1974IL1973IL2219IL2218IL1975
HSOM228400 HSM_1819HSM_1820HSM_0348HSM_1901HSM_1900HSM_0333
HSOM205914 HS_1657HS_1658HS_1215HS_0010HS_0009HS_1285
HHAL349124 HHAL_0948HHAL_0947HHAL_0945HHAL_0316HHAL_0939HHAL_0938HHAL_0946
HCHE349521 HCH_06357HCH_06356HCH_06353HCH_06352HCH_00551HCH_00550HCH_06354
HARS204773 HEAR2767HEAR0290HEAR0289HEAR2739HEAR2740HEAR0291
ESP42895 ENT638_3359ENT638_3358ENT638_3357ENT638_3356ENT638_3353ENT638_3352ENT638_0857
EFER585054 EFER_2892EFER_2891EFER_2890EFER_2889EFER_2888EFER_2887EFER_2637
ECOO157 YGGUYGGTYGGSYGGRYQGFYQGEPROC
ECOL83334 ECS3829ECS3828ECS3826ECS3827ECS3825ECS3824ECS0437
ECOL585397 ECED1_3416ECED1_3415ECED1_3414ECED1_3413ECED1_3412ECED1_3411ECED1_0409
ECOL585057 ECIAI39_3371ECIAI39_3370ECIAI39_3369ECIAI39_3368ECIAI39_3367ECIAI39_3366ECIAI39_0295
ECOL585056 ECUMN_3305ECUMN_3304ECUMN_3303ECUMN_3302ECUMN_3301ECUMN_3300ECUMN_0424
ECOL585055 EC55989_3246EC55989_3245EC55989_3244EC55989_3243EC55989_3242EC55989_3241EC55989_0395
ECOL585035 ECS88_3235ECS88_3234ECS88_3233ECS88_3232ECS88_3231ECS88_3230ECS88_0381
ECOL585034 ECIAI1_3086ECIAI1_3085ECIAI1_3084ECIAI1_3083ECIAI1_3082ECIAI1_3081ECIAI1_0386
ECOL481805 ECOLC_0761ECOLC_0762ECOLC_0763ECOLC_0764ECOLC_0765ECOLC_0766ECOLC_3246
ECOL469008 ECBD_0787ECBD_0788ECBD_0789ECBD_0790ECBD_0791ECBD_0792ECBD_3278
ECOL439855 ECSMS35_3095ECSMS35_3094ECSMS35_3093ECSMS35_3092ECSMS35_3091ECSMS35_3090ECSMS35_0416
ECOL413997 ECB_02783ECB_02782ECB_02781ECB_02780ECB_02779ECB_02778ECB_00333
ECOL409438 ECSE_3221ECSE_3220ECSE_3219ECSE_3218ECSE_3217ECSE_3216ECSE_0407
ECOL405955 APECO1_3568APECO1_3569APECO1_3570APECO1_3571APECO1_3572APECO1_3573APECO1_1622
ECOL364106 UTI89_C3342UTI89_C3341UTI89_C3340UTI89_C3339UTI89_C3338UTI89_C3337UTI89_C0405
ECOL362663 ECP_2947ECP_2946ECP_2945ECP_2944ECP_2943ECP_2942ECP_0445
ECOL331111 ECE24377A_3297ECE24377A_3296ECE24377A_3295ECE24377A_3294ECE24377A_3292ECE24377A_3291ECE24377A_0413
ECOL316407 ECK2948:JW5479:B2953ECK2947:JW2919:B2952ECK2946:JW2918:B2951ECK2945:JW2917:B2950ECK2944:JW2916:B2949ECK2943:JW2915:B2948ECK0381:JW0377:B0386
ECOL199310 C3539C3538C3537C3536C3535C3534C0493
ECAR218491 ECA3630ECA3629ECA3627ECA3626ECA3926ECA3925ECA3628
DRED349161 DRED_0717DRED_0714DRED_0712DRED_1035DRED_0775DRED_1168
DPSY177439 DP0789DP0787DP2780DP1694DP2218DP2233
DOLE96561 DOLE_0289DOLE_3054DOLE_1179DOLE_3053DOLE_1574DOLE_0129
DARO159087 DARO_3887DARO_3886DARO_3884DARO_3883DARO_3892DARO_3893DARO_3885
CVIO243365 CV_0176CV_0178CV_0179CV_3910CV_3909CV_0177
CSAL290398 CSAL_3056CSAL_3054CSAL_3053CSAL_0059CSAL_0058CSAL_3055
CPSY167879 CPS_3665CPS_3663CPS_3662CPS_1251CPS_1252CPS_3664
CJAP155077 CJA_0091CJA_0090CJA_0088CJA_0087CJA_0084CJA_0083CJA_0089
CBUR434922 COXBU7E912_1117COXBU7E912_2188COXBU7E912_2190COXBU7E912_2194COXBU7E912_2193COXBU7E912_2189
AVAR240292 AVA_3894AVA_3109AVA_2899AVA_0375AVA_3804AVA_2901
ASP76114 EBA1762EBA1764EBA1768EBA1770EBA1756EBA1753EBA1766
ASP62977 ACIAD3031ACIAD0913ACIAD0912ACIAD0352ACIAD0353ACIAD3032
ASP62928 AZO3464AZO3465AZO3467AZO3468AZO3460AZO3459AZO3466
ASP232721 AJS_3242AJS_0421AJS_0420AJS_3572AJS_3573AJS_0381
ASAL382245 ASA_3628ASA_3629ASA_3631ASA_3632ASA_1194ASA_1195ASA_3630
APLE416269 APL_1380APL_1381APL_0052APL_0231APL_0232APL_0160
AHYD196024 AHA_3661AHA_3662AHA_3664AHA_3665AHA_3131AHA_3130AHA_3663
AFER243159 AFE_2768AFE_2767AFE_2765AFE_2764AFE_0049AFE_0048AFE_2766
AEHR187272 MLG_0339MLG_0341MLG_0342MLG_0348MLG_0349MLG_0340
ADEH290397 ADEH_1087ADEH_2503ADEH_0623ADEH_1232ADEH_3962ADEH_2480
ABOR393595 ABO_2667ABO_2669ABO_2670ABO_0113ABO_0112ABO_2668
AAVE397945 AAVE_1212AAVE_0638AAVE_0637AAVE_0908AAVE_0907AAVE_0601


Organism features enriched in list (features available for 134 out of the 139 orgs in the list)
Feature    Pvalue       Num occurrences in list  Total num occurrences  
Arrangment:Chains 0.0000232792
Arrangment:Pairs 0.004192436112
Disease:Bubonic_plague 0.000135166
Disease:Dysentery 0.000135166
Disease:Gastroenteritis 0.00004331013
Endospores:No 0.000105631211
Endospores:Yes 0.0003989353
GC_Content_Range4:0-40 2.846e-217213
GC_Content_Range4:40-60 5.798e-2097224
GC_Content_Range7:30-40 4.371e-147166
GC_Content_Range7:40-50 0.000064843117
GC_Content_Range7:50-60 2.004e-1254107
Genome_Size_Range5:2-4 0.002996533197
Genome_Size_Range5:4-6 1.474e-1885184
Genome_Size_Range9:2-3 0.001468716120
Genome_Size_Range9:4-5 2.951e-84496
Genome_Size_Range9:5-6 5.842e-84188
Genome_Size_Range9:6-8 0.00345291638
Gram_Stain:Gram_Neg 3.691e-20120333
Gram_Stain:Gram_Pos 4.979e-191150
Habitat:Host-associated 0.001746034206
Habitat:Multiple 0.000136658178
Motility:No 1.283e-910151
Motility:Yes 2.290e-1398267
Oxygen_Req:Anaerobic 0.00001018102
Oxygen_Req:Facultative 5.114e-1280201
Shape:Coccus 2.148e-6482
Shape:Rod 8.419e-10109347
Temp._range:Psychrophilic 1.448e-699
Temp._range:Thermophilic 0.0047858235



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ORGANISMS CONTAINING AT MOST 1 GENES FROM THE GROUP:

Total number of orgs: 145
Effective number of orgs (counting one per cluster within 468 clusters): 118

Organism list
Homologs in each organism in the list
Features enriched in organism list


Follow (ncbi) link, when present, to find the set of organism features for each organism
Org ID  Org Name  # genes in group found in org  
WPIP955 Wolbachia pipientis0
WPIP80849 Wolbachia endosymbiont of Brugia malayi0
UURE95667 Ureaplasma urealyticum serovar 130
UURE95664 Ureaplasma urealyticum serovar 100
UPAR505682 ncbi Ureaplasma parvum serovar 3 str. ATCC 278150
UMET351160 ncbi uncultured methanogenic archaeon RC-I0
TWHI218496 ncbi Tropheryma whipplei TW08/270
TWHI203267 ncbi Tropheryma whipplei Twist0
TVOL273116 ncbi Thermoplasma volcanium GSS10
TPEN368408 ncbi Thermofilum pendens Hrk 50
TPAL243276 ncbi Treponema pallidum pallidum Nichols1
TKOD69014 ncbi Thermococcus kodakarensis KOD11
TDEN243275 ncbi Treponema denticola ATCC 354051
TACI273075 ncbi Thermoplasma acidophilum DSM 17280
STOK273063 ncbi Sulfolobus tokodaii 70
SSOL273057 ncbi Sulfolobus solfataricus P20
SSAP342451 ncbi Staphylococcus saprophyticus saprophyticus ATCC 153051
SMAR399550 ncbi Staphylothermus marinus F11
SHAE279808 ncbi Staphylococcus haemolyticus JCSC14351
SEPI176280 ncbi Staphylococcus epidermidis ATCC 122281
SEPI176279 ncbi Staphylococcus epidermidis RP62A1
SAUR93062 ncbi Staphylococcus aureus aureus COL0
SAUR93061 ncbi Staphylococcus aureus aureus NCTC 83250
SAUR426430 ncbi Staphylococcus aureus aureus Newman0
SAUR418127 ncbi Staphylococcus aureus aureus Mu30
SAUR367830 Staphylococcus aureus aureus USA3000
SAUR359787 ncbi Staphylococcus aureus aureus JH10
SAUR359786 ncbi Staphylococcus aureus aureus JH90
SAUR282459 ncbi Staphylococcus aureus aureus MSSA4760
SAUR282458 ncbi Staphylococcus aureus aureus MRSA2520
SAUR273036 ncbi Staphylococcus aureus RF1220
SAUR196620 ncbi Staphylococcus aureus aureus MW20
SAUR158879 ncbi Staphylococcus aureus aureus N3150
SAUR158878 ncbi Staphylococcus aureus aureus Mu500
SACI330779 ncbi Sulfolobus acidocaldarius DSM 6390
RSAL288705 ncbi Renibacterium salmoninarum ATCC 332091
RFEL315456 ncbi Rickettsia felis URRWXCal21
RCON272944 ncbi Rickettsia conorii Malish 71
RAKA293614 ncbi Rickettsia akari Hartford1
PTOR263820 ncbi Picrophilus torridus DSM 97900
PRUM264731 ncbi Prevotella ruminicola 230
PMAR93060 ncbi Prochlorococcus marinus MIT 92150
PMAR74546 ncbi Prochlorococcus marinus MIT 93121
PMAR59920 ncbi Prochlorococcus marinus NATL2A1
PMAR167555 ncbi Prochlorococcus marinus NATL1A1
PMAR167546 ncbi Prochlorococcus marinus MIT 93011
PMAR167542 ncbi Prochlorococcus marinus MIT 95150
PMAR167540 Prochlorococcus marinus pastoris MED4ax0
PMAR146891 ncbi Prochlorococcus marinus AS96011
PISL384616 ncbi Pyrobaculum islandicum DSM 41840
PINT246198 Prevotella intermedia 171
PHOR70601 ncbi Pyrococcus horikoshii OT30
PGIN242619 ncbi Porphyromonas gingivalis W831
PAST100379 Onion yellows phytoplasma0
PARS340102 ncbi Pyrobaculum arsenaticum DSM 135140
PAER178306 ncbi Pyrobaculum aerophilum IM20
PABY272844 ncbi Pyrococcus abyssi GE51
OTSU357244 ncbi Orientia tsutsugamushi Boryong1
NSEN222891 ncbi Neorickettsia sennetsu Miyayama0
NPHA348780 ncbi Natronomonas pharaonis DSM 21600
MTHE349307 ncbi Methanosaeta thermophila PT0
MTHE187420 ncbi Methanothermobacter thermautotrophicus Delta H0
MSYN262723 ncbi Mycoplasma synoviae 530
MSTA339860 ncbi Methanosphaera stadtmanae DSM 30910
MSED399549 ncbi Metallosphaera sedula DSM 53480
MPUL272635 ncbi Mycoplasma pulmonis UAB CTIP1
MPNE272634 ncbi Mycoplasma pneumoniae M1290
MPEN272633 ncbi Mycoplasma penetrans HF-20
MMYC272632 ncbi Mycoplasma mycoides mycoides SC str. PG10
MMOB267748 ncbi Mycoplasma mobile 163K0
MMAR444158 ncbi Methanococcus maripaludis C60
MMAR426368 ncbi Methanococcus maripaludis C70
MMAR402880 ncbi Methanococcus maripaludis C50
MMAR368407 ncbi Methanoculleus marisnigri JR10
MMAR267377 ncbi Methanococcus maripaludis S20
MLAB410358 ncbi Methanocorpusculum labreanum Z0
MKAN190192 ncbi Methanopyrus kandleri AV190
MJAN243232 ncbi Methanocaldococcus jannaschii DSM 26610
MHYO295358 ncbi Mycoplasma hyopneumoniae 2320
MHYO262722 ncbi Mycoplasma hyopneumoniae 74480
MHYO262719 ncbi Mycoplasma hyopneumoniae J0
MHUN323259 ncbi Methanospirillum hungatei JF-10
MGEN243273 ncbi Mycoplasma genitalium G370
MFLO265311 ncbi Mesoplasma florum L10
MCAP340047 ncbi Mycoplasma capricolum capricolum ATCC 273430
MBUR259564 ncbi Methanococcoides burtonii DSM 62421
MBAR269797 ncbi Methanosarcina barkeri Fusaro1
MART243272 ncbi Mycoplasma arthritidis 158L3-11
MAEO419665 ncbi Methanococcus aeolicus Nankai-30
MACE188937 ncbi Methanosarcina acetivorans C2A1
LMES203120 ncbi Leuconostoc mesenteroides mesenteroides ATCC 82931
LJOH257314 ncbi Lactobacillus johnsonii NCC 5331
LHEL405566 ncbi Lactobacillus helveticus DPC 45711
LGAS324831 ncbi Lactobacillus gasseri ATCC 333231
LDEL390333 ncbi Lactobacillus delbrueckii bulgaricus ATCC 118421
LDEL321956 ncbi Lactobacillus delbrueckii bulgaricus ATCC BAA-3651
LBIF456481 ncbi Leptospira biflexa serovar Patoc strain Patoc 1 (Paris)1
LBIF355278 ncbi Leptospira biflexa serovar Patoc strain Patoc 1 (Ames)1
LACI272621 ncbi Lactobacillus acidophilus NCFM1
IHOS453591 ncbi Ignicoccus hospitalis KIN4/I0
HWAL362976 ncbi Haloquadratum walsbyi DSM 167900
HSP64091 ncbi Halobacterium sp. NRC-10
HSAL478009 ncbi Halobacterium salinarum R10
HPYL85963 ncbi Helicobacter pylori J990
HPYL357544 ncbi Helicobacter pylori HPAG10
HPY ncbi Helicobacter pylori 266950
HMUK485914 ncbi Halomicrobium mukohataei DSM 122860
HMAR272569 ncbi Haloarcula marismortui ATCC 430490
HBUT415426 ncbi Hyperthermus butylicus DSM 54560
HACI382638 ncbi Helicobacter acinonychis Sheeba0
ERUM302409 ncbi Ehrlichia ruminantium Gardel1
ERUM254945 ncbi Ehrlichia ruminantium Welgevonden1
ECHA205920 ncbi Ehrlichia chaffeensis Arkansas1
ECAN269484 ncbi Ehrlichia canis Jake0
CTRA471473 ncbi Chlamydia trachomatis L2b/UCH-1/proctitis1
CTRA471472 ncbi Chlamydia trachomatis 434/Bu1
CSUL444179 ncbi Candidatus Sulcia muelleri GWSS0
CMUR243161 ncbi Chlamydia muridarum Nigg1
CMET456442 ncbi Candidatus Methanoregula boonei 6A80
CMAQ397948 ncbi Caldivirga maquilingensis IC-1670
CKOR374847 ncbi Candidatus Korarchaeum cryptofilum OPF81
CJEJ407148 ncbi Campylobacter jejuni jejuni 811161
CJEJ360109 ncbi Campylobacter jejuni doylei 269.971
CJEJ354242 ncbi Campylobacter jejuni jejuni 81-1761
CJEJ195099 ncbi Campylobacter jejuni RM12211
CJEJ192222 ncbi Campylobacter jejuni jejuni NCTC 111681
CFET360106 ncbi Campylobacter fetus fetus 82-401
CFEL264202 ncbi Chlamydophila felis Fe/C-561
CCON360104 ncbi Campylobacter concisus 138261
BXEN266265 ncbi Burkholderia xenovorans LB4000
BTUR314724 ncbi Borrelia turicatae 91E1350
BLON206672 ncbi Bifidobacterium longum NCC27051
BHER314723 ncbi Borrelia hermsii DAH0
BGAR290434 ncbi Borrelia garinii PBi0
BBUR224326 ncbi Borrelia burgdorferi B310
BAPH372461 ncbi Buchnera aphidicola Cc (Cinara cedri)1
BAFZ390236 ncbi Borrelia afzelii PKo0
AYEL322098 ncbi Aster yellows witches-broom phytoplasma AYWB0
AURANTIMONAS Aurantimonas manganoxydans SI85-9A10
APHA212042 ncbi Anaplasma phagocytophilum HZ0
APER272557 ncbi Aeropyrum pernix K10
AMAR234826 ncbi Anaplasma marginale St. Maries1
ALAI441768 ncbi Acholeplasma laidlawii PG-8A0
AFUL224325 ncbi Archaeoglobus fulgidus DSM 43040
AAUR290340 ncbi Arthrobacter aurescens TC11


Names of the homologs of the genes in the group in each of these orgs
  G7529   G7528   G7527   G7526   G7525   G7524   EG10769   
WPIP955
WPIP80849
UURE95667
UURE95664
UPAR505682
UMET351160
TWHI218496
TWHI203267
TVOL273116
TPEN368408
TPAL243276 TP_0797
TKOD69014 TK0768
TDEN243275 TDE_2315
TACI273075
STOK273063
SSOL273057
SSAP342451 SSP1581
SMAR399550 SMAR_0527
SHAE279808 SH1303
SEPI176280 SE_1299
SEPI176279 SERP1180
SAUR93062
SAUR93061
SAUR426430
SAUR418127
SAUR367830
SAUR359787
SAUR359786
SAUR282459
SAUR282458
SAUR273036
SAUR196620
SAUR158879
SAUR158878
SACI330779
RSAL288705 RSAL33209_2727
RFEL315456 RF_0044
RCON272944 RC0043
RAKA293614 A1C_00165
PTOR263820
PRUM264731
PMAR93060
PMAR74546 PMT9312_1188
PMAR59920 PMN2A_1731
PMAR167555 NATL1_04481
PMAR167546 P9301ORF_0706
PMAR167542
PMAR167540
PMAR146891 A9601_08551
PISL384616
PINT246198 PIN_A1352
PHOR70601
PGIN242619 PG_2126
PAST100379
PARS340102
PAER178306
PABY272844 PAB7122
OTSU357244 OTBS_0498
NSEN222891
NPHA348780
MTHE349307
MTHE187420
MSYN262723
MSTA339860
MSED399549
MPUL272635 MYPU_5560
MPNE272634
MPEN272633
MMYC272632
MMOB267748
MMAR444158
MMAR426368
MMAR402880
MMAR368407
MMAR267377
MLAB410358
MKAN190192
MJAN243232
MHYO295358
MHYO262722
MHYO262719
MHUN323259
MGEN243273
MFLO265311
MCAP340047
MBUR259564 MBUR_2111
MBAR269797 MBAR_A0480
MART243272 MART0168
MAEO419665
MACE188937 MA4102
LMES203120 LEUM_0558
LJOH257314 LJ_0476
LHEL405566 LHV_0440
LGAS324831 LGAS_0423
LDEL390333 LDB1605
LDEL321956 LBUL_1484
LBIF456481 LEPBI_I3376
LBIF355278 LBF_3262
LACI272621 LBA0419
IHOS453591
HWAL362976
HSP64091
HSAL478009
HPYL85963
HPYL357544
HPY
HMUK485914
HMAR272569
HBUT415426
HACI382638
ERUM302409 ERGA_CDS_05820
ERUM254945 ERWE_CDS_05910
ECHA205920 ECH_0460
ECAN269484
CTRA471473 CTLON_0458
CTRA471472 CTL0463
CSUL444179
CMUR243161 TC_0483
CMET456442
CMAQ397948
CKOR374847 KCR_0466
CJEJ407148 C8J_0791
CJEJ360109 JJD26997_0993
CJEJ354242 CJJ81176_0860
CJEJ195099 CJE_0931
CJEJ192222 CJ0844C
CFET360106 CFF8240_1145
CFEL264202 CF0373
CCON360104 CCC13826_0222
BXEN266265
BTUR314724
BLON206672 BL0927
BHER314723
BGAR290434
BBUR224326
BAPH372461 BCC_360
BAFZ390236
AYEL322098
AURANTIMONAS
APHA212042
APER272557
AMAR234826 AM859
ALAI441768
AFUL224325
AAUR290340 AAUR_3330


Organism features enriched in list (features available for 136 out of the 145 orgs in the list)
Feature    Pvalue       Num occurrences in list  Total num occurrences  
Arrangment:Chains 0.00741721392
Arrangment:Clusters 1.494e-81517
Disease:Toxic-shock_syndrome_and_staphylococcal_scarlet_fever 8.081e-81111
Endospores:No 2.853e-1487211
GC_Content_Range4:0-40 1.343e-1488213
GC_Content_Range4:40-60 0.001221638224
GC_Content_Range4:60-100 3.592e-910145
GC_Content_Range7:0-30 0.00001062447
GC_Content_Range7:30-40 5.951e-864166
GC_Content_Range7:50-60 0.000288212107
GC_Content_Range7:60-70 6.248e-810134
Genome_Size_Range5:0-2 4.894e-2585155
Genome_Size_Range5:4-6 1.441e-204184
Genome_Size_Range5:6-10 0.0000331147
Genome_Size_Range9:0-1 7.929e-112227
Genome_Size_Range9:1-2 9.466e-1463128
Genome_Size_Range9:2-3 0.005569338120
Genome_Size_Range9:3-4 0.0012338877
Genome_Size_Range9:4-5 3.702e-10296
Genome_Size_Range9:5-6 3.967e-9288
Gram_Stain:Gram_Neg 2.196e-752333
Habitat:Host-associated 0.000024368206
Habitat:Multiple 6.038e-916178
Habitat:Specialized 0.00564282053
Motility:No 0.005225046151
Motility:Yes 0.006686451267
Optimal_temp.:30-37 9.617e-71418
Optimal_temp.:85 0.002861844
Oxygen_Req:Aerobic 0.000090826185
Oxygen_Req:Anaerobic 0.003707234102
Oxygen_Req:Microaerophilic 0.00217511018
Salinity:Extreme_halophilic 0.008190157
Shape:Coccus 0.00137763082
Shape:Irregular_coccus 2.724e-71417
Shape:Pleomorphic 0.002483668
Shape:Rod 1.759e-2331347
Shape:Sphere 1.792e-81619
Shape:Spiral 3.844e-62034
Temp._range:Hyperthermophilic 1.736e-61623
Temp._range:Mesophilic 0.000516397473



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ORGANISMS ENRICHED FOR GROUP:




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ORGANISMS DEPLETED FOR GROUP:




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PHYLOGENETIC PROFILE SIMILARITY WITH KNOWN PATHWAYS:

Pathways or complexes with absolute value of Pearson coefficient with respect to candidate larger than 0.4 are listed below
The candidate is assumed to exist in orgs listed in section List of organisms containing most genes from the group


Pathway or complex  # Orgs containing it  # of those orgs also containing candidate  Pearson Coeff  
PWY0-1241 (ADP-L-glycero-β-D-manno-heptose biosynthesis)2181210.5849
COBALSYN-PWY (adenosylcobalamin salvage from cobinamide I)1951120.5695
AST-PWY (arginine degradation II (AST pathway))120830.5497
GLYCOCAT-PWY (glycogen degradation I)2461210.5215
ECASYN-PWY (enterobacterial common antigen biosynthesis)1911040.5133
PWY-5111 (CMP-KDO biosynthesis II (from D-arabinose 5-phosphate))3001310.4943
PWY-5755 (4-hydroxybenzoate biosynthesis II (bacteria and fungi))81610.4921
LIPA-CORESYN-PWY (Lipid A-core biosynthesis)176960.4858
PWY-5918 (heme biosynthesis I)2721230.4844
KDO-LIPASYN-PWY (KDO2-lipid A biosynthesis I)2251090.4720
PHOSLIPSYN-PWY (phospholipid biosynthesis I)2901250.4660
PWY4FS-7 (phosphatidylglycerol biosynthesis I (plastidic))2911250.4642
PWY0-1319 (CDP-diacylglycerol biosynthesis II)2961260.4629
PWY-5913 (TCA cycle variation IV)3011270.4617
PWY-1269 (CMP-KDO biosynthesis I)3251320.4591
HEME-BIOSYNTHESIS-II (heme biosynthesis from uroporphyrinogen-III I)2861230.4579
PWY-4041 (γ-glutamyl cycle)2791200.4478
PWY-5386 (methylglyoxal degradation I)3051260.4469
GLUTATHIONESYN-PWY (glutathione biosynthesis)3391330.4441
GALACTITOLCAT-PWY (galactitol degradation)73530.4401
NAGLIPASYN-PWY (lipid IVA biosynthesis)3481340.4376
PWY-5861 (superpathway of demethylmenaquinone-8 biosynthesis)50410.4235
GLUCONSUPER-PWY (D-gluconate degradation)2291040.4231
PWY-6196 (serine racemization)102630.4193
PWY-5857 (ubiquinone-10 biosynthesis (prokaryotic))183900.4162
ENTNER-DOUDOROFF-PWY (Entner-Doudoroff pathway I)2491080.4128
GLYCOLYSIS-E-D (superpathway of glycolysis and Entner-Doudoroff)2491080.4128
PWY-5148 (acyl-CoA hydrolysis)2271020.4114
PWY-5855 (ubiquinone-7 biosynthesis (prokaryotic))191910.4046
PWY-46 (putrescine biosynthesis III)138740.4012



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PAIRWISE GENOME CONTEXT SCORE MATRIX:

  G7528   G7527   G7526   G7525   G7524   EG10769   
G75290.9996360.9993520.9991770.9988520.9986730.99921
G75280.9996720.9994990.9991320.9991660.999604
G75270.9997330.9989750.9990220.999702
G75260.9993930.9991670.999465
G75250.9998510.998515
G75240.998819
EG10769



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PAIRWISE BLAST SCORES:

  G7529   G7528   G7527   G7526   G7525   G7524   EG10769   
G75290.0f0------
G7528-0.0f0-----
G7527--0.0f0----
G7526---0.0f0---
G7525----0.0f0--
G7524-----0.0f0-
EG10769------0.0f0



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PATHWAYS OR PROTEIN COMPLEX MATCHES IN TARGET ORG:

For each case, all genes involved in the pathway or complex are listed. For each gene we list: a tag indicating whether the gene is part of the candidate list or not, the average and the minimum scores of the gene to the candidate list, the gene name, and its product names.



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GENOME CONTEXT INFORMATION:

Each row corresponds to a replicon in an organism, each column to a gene in the candidate. The second column indicates whether the organims was included in the list used to compute the genome context scores or not. Some organisms are not included because they are phylogenetically too similar to others already in the list.
The number in the matrix indicate the position of the homolog of the gene in the replicon. All numbers are relative to the smaller one, which is assigned a position of zero. Two columns with the same number indicate that the two genes matched the same gene in that organism.

Genome browser links for gene clusters

The links below opens a genome browser BioCyc page for each cluster of genes in the target genome. These pages shows the central gene of the cluster in the target genome and its best homolog in the reference genomes, for the genomes that contain homologs for at least 75% of the genes in the group. Only one genome per phylogenetic cluster of organisms is shown, to keep the list smaller.

G7524 G7525 G7526 G7527 G7528 G7529 (centered at G7527)
EG10769 (centered at EG10769)


ORG:REPLICON:CIRC?\GENE  IN REF LIST  G7529   G7528   G7527   G7526   G7525   G7524   EG10769   
154/623246/623396/623241/623406/623316/623376/623
AAEO224324:0:Tyes--79407--0
AAUR290340:2:Tyes------0
AAVE397945:0:Tyes-59837363013000
ABAC204669:0:Tyes3678-36778400-927
ABAU360910:0:Tyes-13920-14171418295
ABOR393595:0:Tyes-259725992600102598
ABUT367737:0:Tyes-3450----
ACAU438753:0:Tyes-30750-25952113746
ACEL351607:0:Tyes--7661072-14550
ACRY349163:8:Tyes--1188-0--
ADEH290397:0:Tyes466-1896061433731873
AEHR187272:0:Tyes-0239101
AFER243159:0:Tyes2681268026782677102679
AHYD196024:0:Tyes48748849049110489
AMAR234826:0:Tyes----0--
AMAR329726:9:Tyes-143152723750-5274
AMET293826:0:Tyes--33810010-70
ANAE240017:0:Tyes--0-259-635
AORE350688:0:Tyes-1273127115001523-0
APLE416269:0:Tyes135113520-184185113
APLE434271:0:Tno134313440-187188-
ASAL382245:5:Tyes2336233723392340012338
ASP1667:3:Tyes--0---1782
ASP232721:2:Tyes-27724140309430950
ASP62928:0:Tyes5689107
ASP62977:0:Tyes-2494528527012495
ASP76114:2:Tyes5689107
AVAR240292:3:Tyes35332743253403442-2536
BABO262698:0:Tno----167-0
BABO262698:1:Tno-14131241--0-
BAMB339670:3:Tno-1891-1191180
BAMB398577:3:Tno-1701-1091080
BAMY326423:0:Tyes--0-927-671
BANT260799:0:Tno-958960-1489-0
BANT261594:2:Tno-942944-1497-0
BANT568206:2:Tyes-20-3975-1012
BANT592021:2:Tno-10051007-1568-0
BAPH198804:0:Tyes--1-0--
BAPH372461:0:Tyes----0--
BBAC264462:0:Tyes0-33134---
BBAC360095:0:Tyes209-0-686--
BBRO257310:0:Tyes-36292095036543655-
BCAN483179:0:Tno----0-183
BCAN483179:1:Tno-15031311--0-
BCEN331271:2:Tno-2231-1361350
BCEN331272:3:Tyes-2181-1351340
BCER226900:1:Tyes-895897-1371-0
BCER288681:0:Tno-802804-1273-0
BCER315749:1:Tyes--0-540-283
BCER405917:1:Tyes-868870-1373-0
BCER572264:1:Tno-922924-1410-0
BCIC186490:0:Tyes----01-
BCLA66692:0:Tyes--758-0-176
BFRA272559:1:Tyes--727--0-
BFRA295405:0:Tno--915--0-
BHAL272558:0:Tyes-12831285-0-238
BHEN283166:0:Tyes0-1261-619264-
BJAP224911:0:Fyes-075-4576956-
BLIC279010:0:Tyes-0--1078-769
BLON206672:0:Tyes------0
BMAL243160:1:Tno-138373-01372
BMAL320388:1:Tno-4201-5795780
BMAL320389:1:Tyes-163726-01725
BMEL224914:0:Tno----165-0
BMEL224914:1:Tno--0--1243-
BMEL359391:0:Tno----170-0
BMEL359391:1:Tno-13641201--0-
BOVI236:0:Tyes----0-142
BOVI236:1:Tyes--1122--0-
BPAR257311:0:Tno-9760-10011002-
BPER257313:0:Tyes-2403900-10-
BPET94624:0:Tyes-192356-10-
BPSE272560:1:Tyes-0211-5758212
BPSE320372:1:Tno-0246-6061247
BPSE320373:1:Tno-0264-8081265
BPUM315750:0:Tyes-20-927-660
BQUI283165:0:Tyes10938-429184-
BSP107806:2:Tyes--1-0--
BSP36773:2:Tyes-2331-1461450
BSP376:0:Tyes-860-4090839-
BSUB:0:Tyes-20-1242-320
BSUI204722:0:Tyes----0-172
BSUI204722:1:Tyes-14591284--0-
BSUI470137:0:Tno--653-0-163
BSUI470137:1:Tno-1286---0-
BTHA271848:1:Tno-2331-1751740
BTHE226186:0:Tyes--262--0-
BTHU281309:1:Tno-904906-1381-0
BTHU412694:1:Tno--803-1232-0
BTRI382640:1:Tyes0-1787-846426-
BVIE269482:7:Tyes-1741-1081070
BWEI315730:4:Tyes-906908-1405-0
CABO218497:0:Tyes0----344-
CACE272562:1:Tyes--433100-1588
CAULO:0:Tyes236-359--0-
CBEI290402:0:Tyes--474100-3897
CBLO203907:0:Tyes----01-
CBLO291272:0:Tno----01-
CBOT36826:1:Tno--010721095-1712
CBOT441770:0:Tyes--0904989-1691
CBOT441771:0:Tno--0871905-1546
CBOT441772:1:Tno--010241048-1724
CBOT498213:1:Tno--09801073-1719
CBOT508765:1:Tyes--1250100-2333
CBOT515621:2:Tyes--011871210-1851
CBOT536232:0:Tno--011081132-1829
CBUR227377:1:Tyes-02-541
CBUR360115:1:Tno-02-651
CBUR434922:2:Tno010271029-103310321028
CCAV227941:1:Tyes0----377-
CCHL340177:0:Tyes--0--253330
CCON360104:2:Tyes---0---
CCUR360105:0:Tyes-564-418--0
CDES477974:0:Tyes-4504530--451
CDIF272563:1:Tyes--135722490-217
CDIP257309:0:Tyes--1340--19480
CEFF196164:0:Fyes----1342-0
CFEL264202:1:Tyes-----0-
CFET360106:0:Tyes---0---
CGLU196627:0:Tyes----122526680
CHOM360107:1:Tyes-0-246---
CHUT269798:0:Tyes--873--0-
CHYD246194:0:Tyes-14631466870-1464
CJAP155077:0:Tyes8754106
CJEI306537:0:Tyes----0-904
CJEJ192222:0:Tyes-0-----
CJEJ195099:0:Tno-0-----
CJEJ354242:2:Tyes-0-----
CJEJ360109:0:Tyes-0-----
CJEJ407148:0:Tno-0-----
CKLU431943:1:Tyes--854998988-0
CKOR374847:0:Tyes0------
CMIC31964:2:Tyes--612-0--
CMIC443906:2:Tyes--57-0--
CMUR243161:1:Tyes-----0-
CNOV386415:0:Tyes--101013311343-0
CPEL335992:0:Tyes--2870---
CPER195102:1:Tyes--87011-946
CPER195103:0:Tno--84011-870
CPER289380:3:Tyes--85011-836
CPHY357809:0:Tyes--65-0-849
CPNE115711:1:Tyes0----369-
CPNE115713:0:Tno355----0-
CPNE138677:0:Tno364----0-
CPNE182082:0:Tno383----0-
CPRO264201:0:Fyes0-1259--1279-
CPSY167879:0:Tyes-234023382337012339
CRUT413404:0:Tyes--174-0-67
CSAL290398:0:Tyes-305030483047103049
CSP501479:6:Fyes------0
CSP501479:7:Fyes0----540-
CSP501479:8:Fyes--0-761--
CSP78:2:Tyes--545--0-
CTEP194439:0:Tyes1730-1712-55780
CTET212717:0:Tyes--528580-1258
CTRA471472:0:Tyes-----0-
CTRA471473:0:Tno-----0-
CVES412965:0:Tyes--167-0-67
CVIO243365:0:Tyes-023383138301
DARO159087:0:Tyes43109102
DDES207559:0:Tyes7447462189---0
DETH243164:0:Tyes--6858410-135
DGEO319795:1:Tyes---0-162576
DHAF138119:0:Tyes--152910261059-0
DNOD246195:0:Tyes--0462862--
DOLE96561:0:Tyes164296410652963-14620
DPSY177439:2:Tyes202043930-14661480
DRAD243230:3:Tyes---1580-01151
DRED349161:0:Tyes52031962-451
DSHI398580:5:Tyes--0-104230822642
DSP216389:0:Tyes--6467740-114
DSP255470:0:Tno--5787070-121
DVUL882:1:Tyes1317-01205--2268
ECAR218491:0:Tyes43103013002
ECHA205920:0:Tyes----0--
ECOL199310:0:Tno2986298529842983298229810
ECOL316407:0:Tno2572257125702569256825670
ECOL331111:6:Tno2764276327622761275927580
ECOL362663:0:Tno2501250024992498249724960
ECOL364106:1:Tno2933293229312930292929280
ECOL405955:2:Tyes2586258525842583258225810
ECOL409438:6:Tyes2866286528642863286228610
ECOL413997:0:Tno2462246124602459245824570
ECOL439855:4:Tno2609260826072606260526040
ECOL469008:0:Tno0123452474
ECOL481805:0:Tno0123452496
ECOL585034:0:Tno2670266926682667266626650
ECOL585035:0:Tno2762276127602759275827570
ECOL585055:0:Tno2824282328222821282028190
ECOL585056:2:Tno2905290429032902290129000
ECOL585057:0:Tno3096309530943093309230910
ECOL585397:0:Tno2938293729362935293429330
ECOL83334:0:Tno3473347234713470346934680
ECOLI:0:Tno2627262626252624262326220
ECOO157:0:Tno3488348734863485348434830
EFAE226185:3:Tyes----234-0
EFER585054:1:Tyes2552542532522512500
ELIT314225:0:Tyes--1857-0--
ERUM254945:0:Tyes----0--
ERUM302409:0:Tno----0--
ESP42895:1:Tyes2528252725262525252225210
FALN326424:0:Tyes--1195---0
FJOH376686:0:Tyes--3342--0-
FMAG334413:1:Tyes--8-0--
FNOD381764:0:Tyes--0124---
FNUC190304:0:Tyes--10770---
FPHI484022:1:Tyes-0-33411161117555
FRANT:0:Tno-81-0839838-
FSP106370:0:Tyes--950---0
FSP1855:0:Tyes--3330-0-4378
FSUC59374:0:Tyes--3340--1431
FTUL351581:0:Tno-627--01-
FTUL393011:0:Tno-537--01-
FTUL393115:0:Tyes-79-0828827-
FTUL401614:0:Tyes-0-1459710709-
FTUL418136:0:Tno-1456-0624623-
FTUL458234:0:Tno-561--01-
GBET391165:0:Tyes-02065--1601-
GFOR411154:0:Tyes--0--7781297
GKAU235909:1:Tyes-2015171443-1220
GMET269799:1:Tyes26326502507--3
GOXY290633:5:Tyes--134--0-
GSUL243231:0:Tyes42642820990--2096
GTHE420246:1:Tyes-2015291458-1236
GURA351605:0:Tyes19619426943276--0
GVIO251221:0:Tyes3174-01989--2
HARS204773:0:Tyes-233410230723082
HAUR316274:2:Tyes--0-2090-2020
HCHE349521:0:Tyes5612561156095608105610
HDUC233412:0:Tyes4224210-13071306-
HHAL349124:0:Tyes6416406380632631639
HHEP235279:0:Tyes-01122----
HINF281310:0:Tyes-9400-223222231
HINF374930:0:Tyes-924219-230
HINF71421:0:Tno-9230-204203206
HMOD498761:0:Tyes1832-18262830-1828
HNEP81032:0:Tyes--2460-12300334
HSOM205914:1:Tyes164816491213-101283
HSOM228400:0:Tno1502150315-158415830
ILOI283942:0:Tyes-3102482472
JSP290400:1:Tyes--0-17803522-
JSP375286:0:Tyes-267310264626472
KPNE272620:2:Tyes6543101873
KRAD266940:2:Fyes--19602135213113680
LACI272621:0:Tyes----0--
LBIF355278:2:Tyes-----0-
LBIF456481:2:Tno-----0-
LBOR355276:1:Tyes-----5310
LBOR355277:1:Tno-----0480
LBRE387344:2:Tyes----641-0
LCAS321967:1:Tyes----0-1000
LCHO395495:0:Tyes0-12511252360636071248
LDEL321956:0:Tyes----0--
LDEL390333:0:Tyes----0--
LGAS324831:0:Tyes----0--
LHEL405566:0:Tyes----0--
LINN272626:1:Tno--1746-1120-0
LINT189518:1:Tyes-----22460
LINT267671:1:Tno-----01723
LINT363253:3:Tyes--139-0-616
LJOH257314:0:Tyes----0--
LLAC272622:5:Tyes----0-1831
LLAC272623:0:Tyes----0-1741
LMES203120:1:Tyes----0--
LMON169963:0:Tno----1108-0
LMON265669:0:Tyes----1104-0
LPLA220668:0:Tyes----1485-0
LPNE272624:0:Tno212614281426142510-
LPNE297245:1:Fno201813651363136210-
LPNE297246:0:Fyes0------
LPNE297246:1:Fyes-13571355135410-
LPNE400673:0:Tno-31011921193-
LREU557436:0:Tyes--878-192-0
LSAK314315:0:Tyes----0-1244
LSPH444177:1:Tyes--0-2296--
LWEL386043:0:Tyes----1171-0
LXYL281090:0:Tyes--1123-732-0
MABS561007:1:Tyes--0-8412921-
MACE188937:0:Tyes------0
MAER449447:0:Tyes--52250--5223
MAQU351348:2:Tyes-023319731981
MART243272:0:Tyes----0--
MAVI243243:0:Tyes--2252--0-
MBAR269797:1:Tyes------0
MBOV233413:0:Tno--2150--0-
MBOV410289:0:Tno--2105--0-
MBUR259564:0:Tyes------0
MCAP243233:0:Tyes-0237627631
MEXT419610:0:Tyes55021950-17421018-
MFLA265072:0:Tyes-11981010
MGIL350054:3:Tyes-----7670
MLEP272631:0:Tyes--566--0-
MLOT266835:2:Tyes--2628-054144598
MMAG342108:0:Tyes4353-0--862-
MMAR394221:0:Tyes--2176-94314580
MMAZ192952:0:Tyes--874---0
MPET420662:1:Tyes--3047304810-
MPUL272635:0:Tyes----0--
MSME246196:0:Tyes--1082--59200
MSP164756:1:Tno-----47530
MSP164757:0:Tno-----51120
MSP189918:2:Tyes-----48210
MSP266779:3:Tyes--3072-12216010
MSP400668:0:Tyes-86-107
MSP409:2:Tyes-24140-28004681-
MSUC221988:0:Tyes64631497-10-
MTBCDC:0:Tno--2247--0-
MTBRV:0:Tno--2127--0-
MTHE264732:0:Tyes-30687767-2
MTUB336982:0:Tno--2129--0-
MTUB419947:0:Tyes--2188--0-
MVAN350058:0:Tyes----03400-
MXAN246197:0:Tyes--605364136770-
NARO279238:0:Tyes----2260-
NEUR228410:0:Tyes21582581129112920
NEUT335283:2:Tyes167416751864186310-
NFAR247156:2:Tyes--0-188437763441
NGON242231:0:Tyes--1220122101-
NHAM323097:2:Tyes-5100-211033362895
NMEN122586:0:Tno--1012361235-
NMEN122587:0:Tyes--23123612350
NMEN272831:0:Tno--10110111003
NMEN374833:0:Tno--1011781177-
NMUL323848:3:Tyes012132-188118802
NOCE323261:1:Tyes2592259325952596012594
NSP103690:6:Tyes27351587019752638-2
NSP35761:1:Tyes--257162719187890
NSP387092:0:Tyes7110-374---
NWIN323098:0:Tyes-3980-19412694-
OANT439375:4:Tyes--468-0-298
OANT439375:5:Tyes-387---0-
OCAR504832:0:Tyes-050-14843013-
OIHE221109:0:Tyes--1542-2076-0
OTSU357244:0:Fyes----0--
PABY272844:0:Tyes0------
PACN267747:0:Tyes--669-86910320
PAER208963:0:Tyes013413142
PAER208964:0:Tno-02312131
PARC259536:0:Tyes-11121721601110
PATL342610:0:Tyes03341333933387507493340
PCAR338963:0:Tyes2202186479--0
PCRY335284:1:Tyes-11723323201116
PDIS435591:0:Tyes--0--880-
PENT384676:0:Tyes-023446044591
PFLU205922:0:Tyes111087109
PFLU216595:1:Tyes-1087109
PFLU220664:0:Tyes111087109
PFUR186497:0:Tyes51-----0
PGIN242619:0:Tyes--0----
PHAL326442:1:Tyes-643105
PING357804:0:Tyes1633163216301629011631
PINT246198:1:Tyes--0----
PLUM243265:0:Fyes-023451
PLUT319225:0:Tyes186-326--4800
PMAR146891:0:Tyes----0--
PMAR167539:0:Tyes-539----0
PMAR167546:0:Tyes---0---
PMAR167555:0:Tyes------0
PMAR59920:0:Tno------0
PMAR74546:0:Tyes---0---
PMAR74547:0:Tyes-6811970--199
PMEN399739:0:Tyes3801380037983797013799
PMOB403833:0:Tyes--1130---0
PMUL272843:1:Tyes1218121917-177517740
PNAP365044:8:Tyes1012177203090309148
PPEN278197:0:Tyes----0-257
PPRO298386:2:Tyes7643105
PPUT160488:0:Tno-10098971099
PPUT351746:0:Tyes-10098971099
PPUT76869:0:Tno-101999810100
PSP117:0:Tyes2501--4969240810510
PSP296591:2:Tyes225022851074073979
PSP312153:0:Tyes1807-1561-101562
PSP56811:2:Tyes-1941759176001193
PSTU379731:0:Tyes-121091011
PSYR205918:0:Tyes-0239101
PSYR223283:2:Tyes-11981010
PTHE370438:0:Tyes762766769810-767
RAKA293614:0:Fyes-----0-
RALB246199:0:Tyes--106002875--
RBEL336407:0:Tyes----7960-
RBEL391896:0:Fno----9430-
RCAN293613:0:Fyes----7370-
RCAS383372:0:Tyes--2564-2537-0
RCON272944:0:Tno-----0-
RDEN375451:4:Tyes--0-161331623234
RETL347834:5:Tyes-29153118-88102029
REUT264198:2:Tyes-0-----
REUT264198:3:Tyes--21152114102116
REUT381666:1:Tyes-0-----
REUT381666:2:Tyes--18918801190
RFEL315456:2:Tyes-----0-
RFER338969:1:Tyes01036313031296296282930
RLEG216596:6:Tyes3464-3690-104002417
RMAS416276:1:Tyes----3230-
RMET266264:1:Tyes-0-----
RMET266264:2:Tyes--19519401196
RPAL258594:0:Tyes--1888-22050-
RPAL316055:0:Tyes--0-2949320-
RPAL316056:0:Tyes-0224-21947321347
RPAL316057:0:Tyes-01623-235136863218
RPAL316058:0:Tyes-0278-234344184091
RPOM246200:1:Tyes631-3068-20150605
RPRO272947:0:Tyes----2940-
RRIC392021:0:Fno----4170-
RRIC452659:0:Tyes----4370-
RRUB269796:1:Tyes3397-1019030502931-
RSAL288705:0:Tyes------0
RSOL267608:0:Tyes-0-----
RSOL267608:1:Tyes--20522051102053
RSP101510:3:Fyes--0-60382540973
RSP357808:0:Tyes--2832-2806-0
RSPH272943:4:Tyes--1207-01367-
RSPH349101:2:Tno--1171-01331-
RSPH349102:5:Tyes149-2879-16340-
RTYP257363:0:Tno----2230-
RXYL266117:0:Tyes--3220---
SACI56780:0:Tyes109310924611880-1091
SAGA205921:0:Tno--308-1718-0
SAGA208435:0:Tno----1884-0
SAGA211110:0:Tyes--384-1878-0
SALA317655:1:Tyes--2888-7620-
SARE391037:0:Tyes2415-2420-88002481
SAVE227882:1:Fyes--1427-21644160
SBAL399599:3:Tyes9865107
SBAL402882:1:Tno9865107
SBOY300268:1:Tyes2599260026012602260326040
SCO:2:Fyes--591-014691866
SDEG203122:0:Tyes-643105
SDEN318161:0:Tyes-11980110
SDYS300267:1:Tyes2611261226132614261526160
SELO269084:0:Tyes--3343240-336
SENT209261:0:Tno5185175165155135120
SENT220341:0:Tno2558255725562555255325520
SENT295319:0:Tno6036026016005985970
SENT321314:2:Tno2660265926582657265526540
SENT454169:2:Tno2753275227512750274827470
SEPI176279:1:Tyes----0--
SEPI176280:0:Tno----0--
SERY405948:0:Tyes--0--15331117
SFLE198214:0:Tyes2513251225112510250925080
SFLE373384:0:Tno2514251325122511251025090
SFUM335543:0:Tyes3846340833991483--0
SGLO343509:3:Tyes764-105
SGOR29390:0:Tyes----907-0
SHAE279808:0:Tyes----0--
SHAL458817:0:Tyes0134782
SHIGELLA:0:Tno2461246024592458245724560
SLAC55218:1:Fyes1310-731-169001289
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