CANDIDATE ID: 289

CANDIDATE ID: 289

NUMBER OF GENES: 7
AVERAGE SCORE:    9.9958005e-1 (range=[0.0,1.0])
AVERAGE MINIMUM BLAST P-VAL:    4.2857143e-1

Gene List
List of organisms containing most genes from the group
    Phylogenetic tree highlighting these organisms (opens new page)
List of organisms containing very few or no genes from the group
List of organisms enriched for group
List of organisms depleted for group
Phylogenetic profile similarity with known pathways
Pairwise genome context scores
Pairwise Blast scores
Pathway or protein complex matches in target organism
Genome context matrix
    Genes and their orthologs in genome browser BioCyc pages



GENE LIST:

- G6644 (puuA) (b1297)
   Products of gene:
     - G6644-MONOMER (glutamate-putrescine ligase)
     - CPLX0-7709 (glutamate-putrescine ligase)
       Reactions:
        putrescine + L-glutamate + ATP  ->  gamma-glutamyl-L-putrescine + ADP + phosphate + 2 H+
         In pathways
         ORNARGDEG-PWY (superpathway of arginine and ornithine degradation)
         ARGDEG-PWY (superpathway of arginine, putrescine, and 4-aminobutyrate degradation)
         ORNDEG-PWY (superpathway of ornithine degradation)
         PWY0-1221 (putrescine degradation II)

- EG11632 (potI) (b0857)
   Products of gene:
     - POTI-MONOMER (PotI)
     - ABC-25-CPLX (putrescine ABC transporter)
       Reactions:
        ATP + putrescine[periplasmic space] + H2O  ->  ADP + phosphate + putrescine[cytosol]

- EG11631 (potH) (b0856)
   Products of gene:
     - POTH-MONOMER (PotH)
     - ABC-25-CPLX (putrescine ABC transporter)
       Reactions:
        ATP + putrescine[periplasmic space] + H2O  ->  ADP + phosphate + putrescine[cytosol]

- EG11630 (potG) (b0855)
   Products of gene:
     - POTG-MONOMER (PotG)
     - ABC-25-CPLX (putrescine ABC transporter)
       Reactions:
        ATP + putrescine[periplasmic space] + H2O  ->  ADP + phosphate + putrescine[cytosol]

- EG11629 (potF) (b0854)
   Products of gene:
     - POTF-MONOMER (PotF)
     - ABC-25-CPLX (putrescine ABC transporter)
       Reactions:
        ATP + putrescine[periplasmic space] + H2O  ->  ADP + phosphate + putrescine[cytosol]

- EG10751 (potC) (b1124)
   Products of gene:
     - POTC-MONOMER (PotC)
     - ABC-24-CPLX (putrescine/spermidine ABC transporter)
       Reactions:
        ATP + putrescine[periplasmic space] + H2O  ->  ADP + phosphate + putrescine[cytosol]
        ATP + spermidine[periplasmic space] + H2O  ->  ADP + phosphate + spermidine[cytosol]

- EG10750 (potB) (b1125)
   Products of gene:
     - POTB-MONOMER (PotB)
     - ABC-24-CPLX (putrescine/spermidine ABC transporter)
       Reactions:
        ATP + putrescine[periplasmic space] + H2O  ->  ADP + phosphate + putrescine[cytosol]
        ATP + spermidine[periplasmic space] + H2O  ->  ADP + phosphate + spermidine[cytosol]



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ORGANISMS CONTAINING AT LEAST 6 GENES FROM THE GROUP:

Total number of orgs: 205
Effective number of orgs (counting one per cluster within 468 clusters): 136

Organism list
Homologs in each organism in the list
Features enriched in organism list


Follow (ncbi) link, when present, to find the set of organism features for each organism
Org ID  Org Name  # genes in group found in org  
YPSE349747 ncbi Yersinia pseudotuberculosis IP 317586
YPSE273123 ncbi Yersinia pseudotuberculosis IP 329536
YPES386656 ncbi Yersinia pestis Pestoides F6
YPES377628 ncbi Yersinia pestis Nepal5166
YPES360102 ncbi Yersinia pestis Antiqua6
YPES349746 ncbi Yersinia pestis Angola6
YPES214092 ncbi Yersinia pestis CO926
YPES187410 ncbi Yersinia pestis KIM 106
YENT393305 ncbi Yersinia enterocolitica enterocolitica 80816
XCAM487884 Xanthomonas campestris pv. paulliniae7
XCAM316273 ncbi Xanthomonas campestris pv. vesicatoria str. 85-107
XCAM314565 ncbi Xanthomonas campestris pv. campestris str. 80047
XCAM190485 ncbi Xanthomonas campestris pv. campestris str. ATCC 339137
XAXO190486 ncbi Xanthomonas axonopodis pv. citri str. 3067
XAUT78245 ncbi Xanthobacter autotrophicus Py27
VVUL216895 ncbi Vibrio vulnificus CMCP66
VVUL196600 ncbi Vibrio vulnificus YJ0166
VPAR223926 ncbi Vibrio parahaemolyticus RIMD 22106337
VFIS312309 ncbi Vibrio fischeri ES1146
VEIS391735 ncbi Verminephrobacter eiseniae EF01-27
VCHO345073 ncbi Vibrio cholerae O3956
VCHO ncbi Vibrio cholerae O1 biovar El Tor str. N169616
TTHE300852 ncbi Thermus thermophilus HB86
TTHE262724 ncbi Thermus thermophilus HB276
TSP28240 Thermotoga sp.6
TROS309801 ncbi Thermomicrobium roseum DSM 51597
TPET390874 ncbi Thermotoga petrophila RKU-16
TMAR243274 ncbi Thermotoga maritima MSB86
TERY203124 ncbi Trichodesmium erythraeum IMS1017
STYP99287 ncbi Salmonella enterica enterica serovar Typhimurium str. LT26
SSP94122 ncbi Shewanella sp. ANA-37
SSP644076 Silicibacter sp. TrichCH4B7
SSP321332 ncbi Synechococcus sp. JA-2-3Ba(2-13)7
SSP292414 ncbi Ruegeria sp. TM10407
SSON300269 ncbi Shigella sonnei Ss0467
SSED425104 ncbi Shewanella sediminis HAW-EB37
SPRO399741 ncbi Serratia proteamaculans 5687
SPEA398579 ncbi Shewanella pealeana ATCC 7003457
SONE211586 ncbi Shewanella oneidensis MR-17
SMEL266834 ncbi Sinorhizobium meliloti 10217
SMED366394 ncbi Sinorhizobium medicae WSM4197
SLOI323850 ncbi Shewanella loihica PV-47
SLAC55218 Ruegeria lacuscaerulensis7
SHIGELLA ncbi Shigella flexneri 2a str. 2457T7
SHAL458817 ncbi Shewanella halifaxensis HAW-EB47
SGLO343509 ncbi Sodalis glossinidius morsitans6
SFLE373384 ncbi Shigella flexneri 5 str. 84017
SFLE198214 ncbi Shigella flexneri 2a str. 3017
SENT454169 ncbi Salmonella enterica enterica serovar Heidelberg str. SL4766
SENT321314 ncbi Salmonella enterica enterica serovar Choleraesuis str. SC-B676
SENT295319 ncbi Salmonella enterica enterica serovar Paratyphi A str. ATCC 91506
SENT220341 ncbi Salmonella enterica enterica serovar Typhi str. CT186
SENT209261 ncbi Salmonella enterica enterica serovar Typhi str. Ty26
SDYS300267 ncbi Shigella dysenteriae Sd1977
SDEN318161 ncbi Shewanella denitrificans OS2177
SDEG203122 ncbi Saccharophagus degradans 2-406
SBOY300268 ncbi Shigella boydii Sb2277
SBAL402882 ncbi Shewanella baltica OS1857
SBAL399599 ncbi Shewanella baltica OS1957
SAVE227882 ncbi Streptomyces avermitilis MA-46806
SALA317655 ncbi Sphingopyxis alaskensis RB22567
RXYL266117 ncbi Rubrobacter xylanophilus DSM 99417
RSP357808 ncbi Roseiflexus sp. RS-17
RRUB269796 ncbi Rhodospirillum rubrum ATCC 111707
RPOM246200 ncbi Ruegeria pomeroyi DSS-37
RPAL316058 ncbi Rhodopseudomonas palustris HaA27
RPAL316057 ncbi Rhodopseudomonas palustris BisB56
RPAL316056 ncbi Rhodopseudomonas palustris BisB186
RPAL316055 ncbi Rhodopseudomonas palustris BisA536
RPAL258594 ncbi Rhodopseudomonas palustris CGA0097
RMET266264 ncbi Ralstonia metallidurans CH346
RLEG216596 ncbi Rhizobium leguminosarum bv. viciae 38417
RFER338969 ncbi Rhodoferax ferrireducens T1186
RETL347834 ncbi Rhizobium etli CFN 427
RDEN375451 ncbi Roseobacter denitrificans OCh 1147
RCAS383372 ncbi Roseiflexus castenholzii DSM 139417
PSYR223283 ncbi Pseudomonas syringae pv. tomato str. DC30007
PSYR205918 ncbi Pseudomonas syringae pv. syringae B728a7
PSTU379731 ncbi Pseudomonas stutzeri A15017
PSP56811 Psychrobacter sp.6
PPUT76869 ncbi Pseudomonas putida GB-17
PPUT351746 ncbi Pseudomonas putida F17
PPUT160488 ncbi Pseudomonas putida KT24407
PPRO298386 ncbi Photobacterium profundum SS97
PNAP365044 ncbi Polaromonas naphthalenivorans CJ26
PMUL272843 ncbi Pasteurella multocida multocida Pm706
PMEN399739 ncbi Pseudomonas mendocina ymp7
PFLU220664 ncbi Pseudomonas fluorescens Pf-57
PFLU216595 ncbi Pseudomonas fluorescens SBW257
PFLU205922 ncbi Pseudomonas fluorescens Pf0-17
PENT384676 ncbi Pseudomonas entomophila L487
PCRY335284 ncbi Psychrobacter cryohalolentis K56
PAER208964 ncbi Pseudomonas aeruginosa PAO17
PAER208963 ncbi Pseudomonas aeruginosa UCBPP-PA147
OCAR504832 ncbi Oligotropha carboxidovorans OM56
OANT439375 ncbi Ochrobactrum anthropi ATCC 491887
NWIN323098 ncbi Nitrobacter winogradskyi Nb-2556
NMUL323848 ncbi Nitrosospira multiformis ATCC 251966
NMEN272831 ncbi Neisseria meningitidis FAM186
NMEN122587 ncbi Neisseria meningitidis Z24916
NMEN122586 ncbi Neisseria meningitidis MC586
NGON242231 ncbi Neisseria gonorrhoeae FA 10906
NEUT335283 ncbi Nitrosomonas eutropha C916
NEUR228410 ncbi Nitrosomonas europaea ATCC 197186
MSUC221988 ncbi Mannheimia succiniciproducens MBEL55E6
MSP409 Methylobacterium sp.6
MSP400668 ncbi Marinomonas sp. MWYL17
MSP266779 ncbi Chelativorans sp. BNC17
MSP189918 ncbi Mycobacterium sp. KMS6
MSP164757 ncbi Mycobacterium sp. JLS6
MSP164756 ncbi Mycobacterium sp. MCS6
MSME246196 ncbi Mycobacterium smegmatis MC2 1556
MPET420662 ncbi Methylibium petroleiphilum PM17
MMAG342108 ncbi Magnetospirillum magneticum AMB-16
MLOT266835 ncbi Mesorhizobium loti MAFF3030997
MGIL350054 ncbi Mycobacterium gilvum PYR-GCK6
MEXT419610 ncbi Methylobacterium extorquens PA16
MAQU351348 ncbi Marinobacter aquaeolei VT86
LPNE400673 ncbi Legionella pneumophila Corby6
LPNE297245 ncbi Legionella pneumophila Lens6
LPNE272624 ncbi Legionella pneumophila pneumophila Philadelphia 16
LCHO395495 ncbi Leptothrix cholodnii SP-67
KPNE272620 ncbi Klebsiella pneumoniae pneumoniae MGH 785787
JSP375286 ncbi Janthinobacterium sp. Marseille6
HSOM228400 ncbi Haemophilus somnus 23366
HSOM205914 ncbi Haemophilus somnus 129PT6
HMOD498761 ncbi Heliobacterium modesticaldum Ice16
HINF71421 ncbi Haemophilus influenzae Rd KW206
HINF374930 ncbi Haemophilus influenzae PittEE6
HINF281310 ncbi Haemophilus influenzae 86-028NP6
HDUC233412 ncbi Haemophilus ducreyi 35000HP6
HCHE349521 ncbi Hahella chejuensis KCTC 23967
HAUR316274 ncbi Herpetosiphon aurantiacus ATCC 237797
HARS204773 ncbi Herminiimonas arsenicoxydans6
GVIO251221 ncbi Gloeobacter violaceus PCC 74216
FTUL458234 ncbi Francisella tularensis holarctica FTNF002-006
FTUL418136 ncbi Francisella tularensis tularensis WY96-34186
FTUL401614 ncbi Francisella novicida U1126
FTUL393115 ncbi Francisella tularensis tularensis FSC1986
FTUL393011 ncbi Francisella tularensis holarctica OSU186
FTUL351581 Francisella tularensis holarctica FSC2006
FRANT ncbi Francisella tularensis tularensis SCHU S46
FPHI484022 ncbi Francisella philomiragia philomiragia ATCC 250176
FNUC190304 ncbi Fusobacterium nucleatum nucleatum ATCC 255866
FNOD381764 ncbi Fervidobacterium nodosum Rt17-B17
ESP42895 Enterobacter sp.6
EFER585054 ncbi Escherichia fergusonii ATCC 354696
ECOO157 ncbi Escherichia coli O157:H7 EDL9337
ECOL83334 Escherichia coli O157:H77
ECOL585397 ncbi Escherichia coli ED1a6
ECOL585057 ncbi Escherichia coli IAI397
ECOL585056 ncbi Escherichia coli UMN0267
ECOL585055 ncbi Escherichia coli 559897
ECOL585035 ncbi Escherichia coli S886
ECOL585034 ncbi Escherichia coli IAI17
ECOL481805 ncbi Escherichia coli ATCC 87397
ECOL469008 ncbi Escherichia coli BL21(DE3)7
ECOL439855 ncbi Escherichia coli SMS-3-57
ECOL413997 ncbi Escherichia coli B str. REL6067
ECOL409438 ncbi Escherichia coli SE117
ECOL405955 ncbi Escherichia coli APEC O16
ECOL364106 ncbi Escherichia coli UTI896
ECOL362663 ncbi Escherichia coli 5366
ECOL331111 ncbi Escherichia coli E24377A7
ECOL316407 ncbi Escherichia coli K-12 substr. W31107
ECOL199310 ncbi Escherichia coli CFT0736
ECAR218491 ncbi Pectobacterium atrosepticum SCRI10436
DVUL882 ncbi Desulfovibrio vulgaris Hildenborough6
CVIO243365 ncbi Chromobacterium violaceum ATCC 124727
CSP78 Caulobacter sp.6
CSP501479 Citreicella sp. SE457
CSAL290398 ncbi Chromohalobacter salexigens DSM 30436
CPSY167879 ncbi Colwellia psychrerythraea 34H7
CBEI290402 ncbi Clostridium beijerinckii NCIMB 80526
CAULO ncbi Caulobacter crescentus CB157
BXEN266265 ncbi Burkholderia xenovorans LB4007
BVIE269482 ncbi Burkholderia vietnamiensis G47
BTHA271848 ncbi Burkholderia thailandensis E2647
BSUI470137 ncbi Brucella suis ATCC 234457
BSUI204722 ncbi Brucella suis 13307
BSP376 Bradyrhizobium sp.6
BSP36773 Burkholderia sp.7
BPSE320373 ncbi Burkholderia pseudomallei 6687
BPSE320372 ncbi Burkholderia pseudomallei 1710b7
BPSE272560 ncbi Burkholderia pseudomallei K962437
BPET94624 Bordetella petrii6
BPER257313 ncbi Bordetella pertussis Tohama I6
BPAR257311 ncbi Bordetella parapertussis 128226
BMEL359391 ncbi Brucella melitensis biovar Abortus 23087
BMEL224914 ncbi Brucella melitensis bv. 1 str. 16M7
BMAL320389 ncbi Burkholderia mallei NCTC 102477
BMAL320388 ncbi Burkholderia mallei SAVP17
BMAL243160 ncbi Burkholderia mallei ATCC 233447
BJAP224911 ncbi Bradyrhizobium japonicum USDA 1107
BCEN331272 ncbi Burkholderia cenocepacia HI24247
BCEN331271 ncbi Burkholderia cenocepacia AU 10547
BCAN483179 ncbi Brucella canis ATCC 233657
BBRO257310 ncbi Bordetella bronchiseptica RB506
BAMB398577 ncbi Burkholderia ambifaria MC40-67
BAMB339670 ncbi Burkholderia ambifaria AMMD7
BABO262698 ncbi Brucella abortus bv. 1 str. 9-9417
ASAL382245 ncbi Aeromonas salmonicida salmonicida A4497
AHYD196024 Aeromonas hydrophila dhakensis7
ACAU438753 ncbi Azorhizobium caulinodans ORS 5717
ABAU360910 ncbi Bordetella avium 197N6


Names of the homologs of the genes in the group in each of these orgs
  G6644   EG11632   EG11631   EG11630   EG11629   EG10751   EG10750   
YPSE349747 YPSIP31758_2642YPSIP31758_2643YPSIP31758_2644YPSIP31758_2645YPSIP31758_2642YPSIP31758_2643
YPSE273123 YPTB2807YPTB1363YPTB1362YPTB1361YPTB2807YPTB1363
YPES386656 YPDSF_2362YPDSF_2363YPDSF_2364YPDSF_2366YPDSF_2362YPDSF_2363
YPES377628 YPN_2646YPN_2647YPN_2648YPN_2649YPN_2646YPN_2647
YPES360102 YPA_0624YPA_0623YPA_0622YPA_0621YPA_0624YPA_0623
YPES349746 YPANGOLA_A1566YPANGOLA_A1565YPANGOLA_A1564YPANGOLA_A1563YPANGOLA_A1566YPANGOLA_A1565
YPES214092 YPO1334YPO1333YPO1332YPO1331YPO1334YPO1333
YPES187410 Y2847Y2848Y2849Y2851Y2847Y2848
YENT393305 YE1487YE1486YE1485YE1484YE1487YE1486
XCAM487884 XCC-B100_1824XCC-B100_1835XCC-B100_1834XCC-B100_1833XCC-B100_1829XCC-B100_1835XCC-B100_1834
XCAM316273 XCAORF_2626XCAORF_2613XCAORF_2614XCAORF_2615XCAORF_2620XCAORF_2613XCAORF_2614
XCAM314565 XC_1768XC_1778XC_1777XC_1776XC_1772XC_1778XC_1777
XCAM190485 XCC2348XCC2338XCC2339XCC2340XCC2344XCC2338XCC2339
XAXO190486 XAC2480XAC2470XAC2471XAC2472XAC2476XAC2470XAC2471
XAUT78245 XAUT_2336XAUT_2943XAUT_2942XAUT_2941XAUT_2337XAUT_2943XAUT_2942
VVUL216895 VV1_2602VV1_2603VV1_2604VV1_2600VV1_2602VV1_2603
VVUL196600 VV1687VV1686VV1685VV1690VV1687VV1686
VPAR223926 VP1781VP1527VP1528VP1529VP1525VP1527VP1528
VFIS312309 VF1317VF1316VF1315VF1319VF1317VF1316
VEIS391735 VEIS_0825VEIS_0821VEIS_0822VEIS_0823VEIS_1698VEIS_4754VEIS_0822
VCHO345073 VC0395_A1037VC0395_A1038VC0395_A1039VC0395_A1035VC0395_A1037VC0395_A1038
VCHO VC1426VC1427VC1428VC1424VC1426VC1427
TTHE300852 TTHA1329TTHA1238TTHA1239TTHA1240TTHA1238TTHA1239
TTHE262724 TT_C0965TT_C0874TT_C0875TT_C0876TT_C0874TT_C0875
TSP28240 TRQ2_1451TRQ2_1452TRQ2_1453TRQ2_1454TRQ2_1451TRQ2_1452
TROS309801 TRD_A0430TRD_0521TRD_0522TRD_0523TRD_0520TRD_0521TRD_0522
TPET390874 TPET_1405TPET_1406TPET_1407TPET_1408TPET_1405TPET_1406
TMAR243274 TM_1378TM_1377TM_1376TM_1375TM_1378TM_1377
TERY203124 TERY_4681TERY_2802TERY_2818TERY_2805TERY_2816TERY_2802TERY_2818
STYP99287 STM0880STM0879STM0878STM0877STM1223STM1225
SSP94122 SHEWANA3_3098SHEWANA3_3094SHEWANA3_3095SHEWANA3_3096SHEWANA3_3097SHEWANA3_3094SHEWANA3_3095
SSP644076 SCH4B_1930SCH4B_3309SCH4B_3310SCH4B_3311SCH4B_3312SCH4B_3309SCH4B_2830
SSP321332 CYB_1005CYB_2209CYB_1299CYB_2079CYB_0505CYB_2209CYB_1299
SSP292414 TM1040_1836TM1040_2981TM1040_2982TM1040_2983TM1040_2984TM1040_2981TM1040_2982
SSON300269 SSO_1843SSO_0842SSO_0841SSO_0840SSO_0839SSO_1142SSO_1143
SSED425104 SSED_1060SSED_1064SSED_1063SSED_1062SSED_1061SSED_1064SSED_1063
SPRO399741 SPRO_3216SPRO_1648SPRO_1647SPRO_1646SPRO_1645SPRO_1648SPRO_1647
SPEA398579 SPEA_0945SPEA_0949SPEA_0948SPEA_0947SPEA_0946SPEA_0949SPEA_0948
SONE211586 SO_1268SO_1273SO_1272SO_1271SO_1270SO_1273SO_1272
SMEL266834 SMC01973SMC00773SMC00772SMC00771SMC00770SMC00773SMC00772
SMED366394 SMED_2416SMED_0313SMED_0312SMED_0311SMED_0310SMED_0313SMED_0312
SLOI323850 SHEW_0972SHEW_0976SHEW_0975SHEW_0974SHEW_0973SHEW_0976SHEW_0975
SLAC55218 SL1157_2316SL1157_1405SL1157_1404SL1157_1403SL1157_1402SL1157_1405SL1157_1404
SHIGELLA S1384POTIPOTHPOTGPOTFPOTCPOTB
SHAL458817 SHAL_0995SHAL_0999SHAL_0998SHAL_0997SHAL_0996SHAL_0999SHAL_0998
SGLO343509 SG0928SG0927SG0926SG0925SG0928SG0927
SFLE373384 SFV_1311SFV_0842SFV_0841SFV_1144SFV_0839SFV_1142SFV_1143
SFLE198214 AAN42913.1AAN42444.1AAN42443.1AAN42442.1AAN42441.1AAN42744.1AAN42745.1
SENT454169 SEHA_C1014SEHA_C1013SEHA_C1012SEHA_C1011SEHA_C1338SEHA_C1342
SENT321314 SCH_0873SCH_0872SCH_0871SCH_0870SCH_1173SCH_1176
SENT295319 SPA1882SPA1883SPA1884SPA1885SPA1627SPA1625
SENT220341 STY0913STY0912STY0911STY0910STY1263STY1265
SENT209261 T2016T2017T2018T2019T1697T1695
SDYS300267 SDY_1947SDY_0738SDY_0739SDY_0740SDY_0741SDY_2028SDY_2027
SDEN318161 SDEN_3032SDEN_3028SDEN_3029SDEN_3030SDEN_3031SDEN_3028SDEN_3029
SDEG203122 SDE_1364SDE_1365SDE_1366SDE_1367SDE_1364SDE_1365
SBOY300268 SBO_1765SBO_0791SBO_0790SBO_0789SBO_0788SBO_1939SBO_1916
SBAL402882 SHEW185_1165SHEW185_1169SHEW185_1168SHEW185_1167SHEW185_1166SHEW185_1169SHEW185_1168
SBAL399599 SBAL195_1198SBAL195_1202SBAL195_1201SBAL195_1200SBAL195_1199SBAL195_1202SBAL195_1201
SAVE227882 SAV6725SAV1735SAV2589SAV2590SAV2588SAV2589
SALA317655 SALA_1118SALA_1115SALA_1116SALA_1114SALA_1117SALA_1115SALA_1116
RXYL266117 RXYL_1031RXYL_2915RXYL_2914RXYL_2912RXYL_2913RXYL_2915RXYL_2914
RSP357808 ROSERS_1047ROSERS_1644ROSERS_1642ROSERS_1641ROSERS_1645ROSERS_1644ROSERS_1642
RRUB269796 RRU_A1253RRU_A1015RRU_A1016RRU_A1017RRU_A1018RRU_A1015RRU_A1016
RPOM246200 SPO_1302SPO_3466SPO_3467SPO_3468SPO_3469SPO_3466SPO_3467
RPAL316058 RPB_1135RPB_1456RPB_1455RPB_1454RPB_3360RPB_1456RPB_1455
RPAL316057 RPD_1432RPD_1431RPD_1430RPD_2082RPD_1432RPD_1431
RPAL316056 RPC_3952RPC_3953RPC_3954RPC_2105RPC_3952RPC_3953
RPAL316055 RPE_4081RPE_4082RPE_4083RPE_2015RPE_4081RPE_4082
RPAL258594 RPA1401RPA4158RPA4159RPA4160RPA2014RPA4158RPA4159
RMET266264 RMET_4397RMET_4398RMET_4399RMET_4396RMET_4397RMET_4398
RLEG216596 RL1466RL0766RL0765RL0764RL0763RL0766RL0765
RFER338969 RFER_0350RFER_0355RFER_0354RFER_0353RFER_0352RFER_0354
RETL347834 RHE_CH01315RHE_CH00717RHE_CH00716RHE_CH00715RHE_CH00714RHE_CH00717RHE_CH00716
RDEN375451 RD1_1894RD1_0167RD1_0168RD1_0169RD1_0170RD1_0167RD1_0168
RCAS383372 RCAS_3479RCAS_2838RCAS_2839RCAS_2840RCAS_2837RCAS_2838RCAS_2839
PSYR223283 PSPTO_5310PSPTO_5301PSPTO_5302PSPTO_5303PSPTO_5307PSPTO_5301PSPTO_5302
PSYR205918 PSYR_4868PSYR_4861PSYR_4862PSYR_4863PSYR_4865PSYR_4861PSYR_4862
PSTU379731 PST_0063PST_0071PST_0070PST_0069PST_0067PST_0071PST_0070
PSP56811 PSYCPRWF_1063PSYCPRWF_1062PSYCPRWF_1061PSYCPRWF_1064PSYCPRWF_1063PSYCPRWF_1062
PPUT76869 PPUTGB1_5347PPUTGB1_5237PPUTGB1_5238PPUTGB1_5239PPUTGB1_5241PPUTGB1_5237PPUTGB1_5238
PPUT351746 PPUT_5091PPUT_5084PPUT_5085PPUT_5086PPUT_5088PPUT_5084PPUT_5085
PPUT160488 PP_5299PP_5177PP_5178PP_5179PP_5181PP_5177PP_5178
PPRO298386 PBPRB0862PBPRA1854PBPRA1853PBPRA1852PBPRA1856PBPRA1854PBPRA1853
PNAP365044 PNAP_2864PNAP_2859PNAP_2860PNAP_2861PNAP_2862PNAP_2860
PMUL272843 PM0262PM0263PM0264PM0261PM0262PM0263
PMEN399739 PMEN_0341PMEN_0349PMEN_0348PMEN_0347PMEN_0344PMEN_0349PMEN_0348
PFLU220664 PFL_2341PFL_2337PFL_2338PFL_5924PFL_5926PFL_2337PFL_2338
PFLU216595 PFLU5849PFLU5841PFLU5842PFLU5843PFLU5845PFLU5841PFLU5842
PFLU205922 PFL_2122PFL_5401PFL_5402PFL_2120PFL_5405PFL_3144PFL_2119
PENT384676 PSEEN5299PSEEN5291PSEEN5292PSEEN5293PSEEN5295PSEEN5291PSEEN5292
PCRY335284 PCRYO_0237PCRYO_0238PCRYO_0239PCRYO_2162PCRYO_0237PCRYO_0238
PAER208964 PA0296PA0304PA0303PA0302PA1410PA3609PA3608
PAER208963 PA14_03860PA14_03960PA14_03950PA14_03940PA14_46220PA14_17620PA14_17630
OCAR504832 OCAR_5113OCAR_5112OCAR_5111OCAR_6504OCAR_5113OCAR_5112
OANT439375 OANT_3936OANT_3925OANT_3926OANT_3927OANT_3928OANT_3925OANT_3926
NWIN323098 NWI_1008NWI_1007NWI_1006NWI_1241NWI_1008NWI_1007
NMUL323848 NMUL_A0980NMUL_A0981NMUL_A0982NMUL_A0979NMUL_A0980NMUL_A0981
NMEN272831 NMC0555NMC0554NMC0553NMC1516NMC0555NMC0554
NMEN122587 NMA0818NMA0817NMA0816NMA1786NMA0818NMA0817
NMEN122586 NMB_0612NMB_0611NMB_0610NMB_1594NMB_0612NMB_0611
NGON242231 NGO0196NGO0195NGO0192NGO1253NGO0196NGO0195
NEUT335283 NEUT_1330NEUT_1329NEUT_1328NEUT_1331NEUT_1330NEUT_1329
NEUR228410 NE1872NE1871NE1870NE1873NE1872NE1871
MSUC221988 MS0810MS0811MS0812MS0809MS0810MS0811
MSP409 M446_6381M446_6380M446_6379M446_4922M446_6381M446_6380
MSP400668 MMWYL1_3524MMWYL1_3520MMWYL1_3521MMWYL1_3522MMWYL1_3523MMWYL1_3520MMWYL1_3521
MSP266779 MESO_0161MESO_0166MESO_0165MESO_0164MESO_0163MESO_0166MESO_0165
MSP189918 MKMS_0523MKMS_2609MKMS_2610MKMS_2612MKMS_2609MKMS_2610
MSP164757 MJLS_0501MJLS_2603MJLS_2604MJLS_2606MJLS_2603MJLS_2604
MSP164756 MMCS_0512MMCS_2564MMCS_2565MMCS_2567MMCS_2564MMCS_2565
MSME246196 MSMEG_3827MSMEG_3277MSMEG_3279MSMEG_0662MSMEG_3277MSMEG_3279
MPET420662 MPE_A1901MPE_A1906MPE_A1905MPE_A1904MPE_A1903MPE_A1906MPE_A1905
MMAG342108 AMB2622AMB2623AMB2624AMB2625AMB2622AMB2623
MLOT266835 MLL5148MLR6537MLR6536MLR6534MLR6992MLR6537MLR6536
MGIL350054 MFLV_4065MFLV_3135MFLV_3136MFLV_3138MFLV_3135MFLV_3136
MEXT419610 MEXT_4192MEXT_4193MEXT_4194MEXT_4019MEXT_4192MEXT_4193
MAQU351348 MAQU_2138MAQU_2137MAQU_2136MAQU_2135MAQU_0343MAQU_0342
LPNE400673 LPC_1721LPC_0603LPC_0604LPC_0605LPC_0603LPC_0604
LPNE297245 LPL2178LPL1146LPL1147LPL1148LPL1146LPL1147
LPNE272624 LPG2252LPG1139LPG1140LPG1141LPG1139LPG1140
LCHO395495 LCHO_1739LCHO_1733LCHO_1734LCHO_1735LCHO_1736LCHO_1733LCHO_1734
KPNE272620 GKPORF_B5460GKPORF_B5326GKPORF_B5325GKPORF_B5324GKPORF_B5323GKPORF_B0047GKPORF_B0048
JSP375286 MMA_3104MMA_3105MMA_3106MMA_3103MMA_3104MMA_3105
HSOM228400 HSM_1576HSM_1575HSM_1574HSM_1532HSM_1576HSM_1575
HSOM205914 HS_1159HS_1158HS_1157HS_1048HS_1159HS_1158
HMOD498761 HM1_2353HM1_2278HM1_2277HM1_2276HM1_2278HM1_2277
HINF71421 HI_1345HI_1346HI_1347HI_0498HI_1345HI_1346
HINF374930 CGSHIEE_04250CGSHIEE_04255CGSHIEE_04260CGSHIEE_00505CGSHIEE_04250CGSHIEE_04255
HINF281310 NTHI1822NTHI1821NTHI1820NTHI0626NTHI1822NTHI1821
HDUC233412 HD_0574HD_0573HD_0572HD_1074HD_0574HD_0573
HCHE349521 HCH_06321HCH_02207HCH_02208HCH_02209HCH_02206HCH_02207HCH_02208
HAUR316274 HAUR_4032HAUR_1063HAUR_1062HAUR_1061HAUR_1064HAUR_1063HAUR_1062
HARS204773 HEAR2849HEAR2850HEAR2851HEAR2848HEAR2849HEAR2850
GVIO251221 GLL1402GLL1403GLL1404GLR1359GLL1402GLL1403
FTUL458234 FTA_0715FTA_0716FTA_0717FTA_1667FTA_0715FTA_0716
FTUL418136 FTW_1455FTW_1454FTW_1453FTW_1589FTW_1455FTW_1454
FTUL401614 FTN_0737FTN_0738FTN_0739FTN_0572FTN_0737FTN_0738
FTUL393115 FTF0564FTF0563FTF0562FTF0481FTF0564FTF0563
FTUL393011 FTH_0681FTH_0682FTH_0683FTH_1528FTH_0681FTH_0682
FTUL351581 FTL_0679FTL_0680FTL_0681FTL_1582FTL_0679FTL_0680
FRANT POTIPOTHPOTGPOTFPOTIPOTH
FPHI484022 FPHI_0143FPHI_0142FPHI_0141FPHI_0265FPHI_0143FPHI_0142
FNUC190304 FN1799FN1798FN1797FN0618FN1799FN1798
FNOD381764 FNOD_0261FNOD_0372FNOD_0371FNOD_0370FNOD_1364FNOD_0372FNOD_0371
ESP42895 ENT638_1371ENT638_1370ENT638_1369ENT638_1368ENT638_1637ENT638_1638
EFER585054 EFER_1000EFER_0999EFER_0998EFER_0997EFER_1288EFER_1289
ECOO157 Z2491POTIPOTHPOTGPOTFPOTCPOTB
ECOL83334 ECS1874ECS0937ECS0936ECS0935ECS0934ECS1500ECS1570
ECOL585397 ECED1_0822ECED1_1268ECED1_0819ECED1_0818ECED1_1267ECED1_1268
ECOL585057 ECIAI39_1648ECIAI39_0837ECIAI39_0836ECIAI39_0835ECIAI39_0834ECIAI39_2036ECIAI39_2035
ECOL585056 ECUMN_1603ECUMN_1047ECUMN_1046ECUMN_1045ECUMN_1044ECUMN_1302ECUMN_1368
ECOL585055 EC55989_1459EC55989_0902EC55989_0901EC55989_0900EC55989_0899EC55989_1236EC55989_1237
ECOL585035 ECS88_0874ECS88_0873ECS88_0872ECS88_0871ECS88_1138ECS88_1139
ECOL585034 ECIAI1_1322ECIAI1_0896ECIAI1_0895ECIAI1_0894ECIAI1_0893ECIAI1_1161ECIAI1_1162
ECOL481805 ECOLC_2328ECOLC_2739ECOLC_2740ECOLC_2741ECOLC_2742ECOLC_2479ECOLC_2478
ECOL469008 ECBD_2320ECBD_2737ECBD_2738ECBD_2739ECBD_2740ECBD_2475ECBD_2474
ECOL439855 ECSMS35_1825ECSMS35_0885ECSMS35_0884ECSMS35_0883ECSMS35_0882ECSMS35_2002ECSMS35_2001
ECOL413997 ECB_01274ECB_00862ECB_00861ECB_00860ECB_00859ECB_01122ECB_01123
ECOL409438 ECSE_1349ECSE_0915ECSE_0914ECSE_0913ECSE_0912ECSE_1190ECSE_1191
ECOL405955 APECO1_1236APECO1_1237APECO1_1238APECO1_1239APECO1_206APECO1_207
ECOL364106 UTI89_C0860UTI89_C0859UTI89_C0858UTI89_C0857UTI89_C1252UTI89_C1253
ECOL362663 ECP_0871ECP_0870ECP_0869ECP_0868ECP_1118ECP_1119
ECOL331111 ECE24377A_1506ECE24377A_0929ECE24377A_0928ECE24377A_0927ECE24377A_0926ECE24377A_1247ECE24377A_1288
ECOL316407 ECK1292:JW5201:B1297ECK0848:JW0841:B0857ECK0847:JW0840:B0856ECK0846:JW5818:B0855ECK0845:JW0838:B0854ECK1110:JW1110:B1124ECK1111:JW1111:B1125
ECOL199310 C0990C0989C0988C0987C1399C1476
ECAR218491 ECA2674ECA2675ECA2676ECA2677ECA2452ECA2451
DVUL882 DVU_0096DVU_0097DVU_0098DVU_0095DVU_0096DVU_0097
CVIO243365 CV_2024CV_1959CV_1958CV_1333CV_1957CV_4100CV_4101
CSP78 CAUL_3952CAUL_3949CAUL_3950CAUL_3948CAUL_3949CAUL_3950
CSP501479 CSE45_3819CSE45_3247CSE45_3246CSE45_3246CSE45_3245CSE45_3247CSE45_3246
CSAL290398 CSAL_1181CSAL_1194CSAL_1195CSAL_1193CSAL_1194CSAL_1195
CPSY167879 CPS_4677CPS_4674CPS_4673CPS_4672CPS_0103CPS_4674CPS_4673
CBEI290402 CBEI_4206CBEI_4938CBEI_4939CBEI_4940CBEI_4938CBEI_4939
CAULO CC3138CC3135CC3136CC3134CC3137CC3135CC3136
BXEN266265 BXE_B0942BXE_B0937BXE_B0938BXE_B0939BXE_B0940BXE_B0937BXE_B0938
BVIE269482 BCEP1808_5375BCEP1808_3085BCEP1808_1692BCEP1808_3083BCEP1808_1694BCEP1808_3085BCEP1808_1692
BTHA271848 BTH_I1828BTH_II1951BTH_I2278BTH_I2277BTH_I2276BTH_I2279BTH_I2278
BSUI470137 BSUIS_B0760BSUIS_A1665BSUIS_A1666BSUIS_A1667BSUIS_A1668BSUIS_A1665BSUIS_A1666
BSUI204722 BR_A0768BR_1609BR_1610BR_1611BR_1612BR_1609BR_1610
BSP376 BRADO1217BRADO1216BRADO1215BRADO4681BRADO1217BRADO1216
BSP36773 BCEP18194_B0804BCEP18194_B2811BCEP18194_A5048BCEP18194_A6346BCEP18194_A5050BCEP18194_C7680BCEP18194_C7681
BPSE320373 BURPS668_2654BURPS668_A0723BURPS668_2121BURPS668_A0725BURPS668_2123BURPS668_0130BURPS668_2121
BPSE320372 BURPS1710B_A3021BURPS1710B_B2366BURPS1710B_A2505BURPS1710B_B2368BURPS1710B_A2507BURPS1710B_A2504BURPS1710B_A2505
BPSE272560 BPSL2336BPSS0464BPSL1557BPSS0466BPSL1555BPSL1558BPSL1557
BPET94624 BPET1951BPET1950BPET1949BPET1948BPET1951BPET1950
BPER257313 BP2345BP2346BP2347BP2348BP2345BP2346
BPAR257311 BPP1694BPP1693BPP1692BPP1691BPP1694BPP1693
BMEL359391 BAB2_0471BAB1_1624BAB2_1064BAB1_1627BAB1_1628BAB1_1624BAB2_1064
BMEL224914 BMEII0523BMEI0414BMEI0413BMEI0412BMEI0411BMEI0414BMEI0413
BMAL320389 BMA10247_1669BMA10247_1055BMA10247_1056BMA10247_1057BMA10247_1058BMA10247_1055BMA10247_1056
BMAL320388 BMASAVP1_A2355BMASAVP1_A1785BMASAVP1_A1786BMASAVP1_A1787BMASAVP1_A1788BMASAVP1_A1785BMASAVP1_A1786
BMAL243160 BMA_0656BMA_1298BMA_1299BMA_1300BMA_1301BMA_1298BMA_1299
BJAP224911 BLR2084BLL7103BLL7104BLL7105BLR3806BLL7103BLL7104
BCEN331272 BCEN2424_4901BCEN2424_2999BCEN2424_1749BCEN2424_2997BCEN2424_1751BCEN2424_2999BCEN2424_1749
BCEN331271 BCEN_3465BCEN_2385BCEN_6330BCEN_2383BCEN_6328BCEN_2385BCEN_6330
BCAN483179 BCAN_B0777BCAN_A1646BCAN_A1647BCAN_A1648BCAN_A1649BCAN_A1646BCAN_A1647
BBRO257310 BB3414BB3415BB3416BB3417BB3414BB3415
BAMB398577 BAMMC406_4806BAMMC406_1669BAMMC406_1670BAMMC406_2906BAMMC406_1672BAMMC406_2908BAMMC406_1670
BAMB339670 BAMB_4278BAMB_3046BAMB_1673BAMB_3044BAMB_1675BAMB_3046BAMB_1673
BABO262698 BRUAB2_0464BRUAB1_1596BRUAB2_1045BRUAB1_1598BRUAB1_1599BRUAB1_1596BRUAB2_1045
ASAL382245 ASA_0172ASA_0178ASA_0177ASA_0176ASA_0174ASA_0178ASA_0177
AHYD196024 AHA_4140AHA_4134AHA_4135AHA_4136AHA_4138AHA_4134AHA_4135
ACAU438753 AZC_3648AZC_3517AZC_3518AZC_3519AZC_1465AZC_3517AZC_3518
ABAU360910 BAV2251BAV2252BAV2253BAV2254BAV2251BAV2252


Organism features enriched in list (features available for 190 out of the 205 orgs in the list)
Feature    Pvalue       Num occurrences in list  Total num occurrences  
Arrangment:Chains 8.794e-61392
Arrangment:Singles 0.0014399109286
Disease:Brucellosis 0.003546955
Disease:Bubonic_plague 0.001135366
Disease:Dysentery 0.001135366
Disease:Gastroenteritis 0.00105681013
Disease:Opportunistic_infections 0.003546955
Disease:Tularemia 0.003546955
Endospores:No 3.616e-1036211
Endospores:Yes 9.608e-7353
GC_Content_Range4:0-40 4.312e-2022213
GC_Content_Range4:40-60 0.000200592224
GC_Content_Range4:60-100 5.299e-976145
GC_Content_Range7:0-30 1.097e-6247
GC_Content_Range7:30-40 1.411e-1220166
GC_Content_Range7:50-60 1.601e-860107
GC_Content_Range7:60-70 3.375e-1074134
Genome_Size_Range5:0-2 3.775e-1514155
Genome_Size_Range5:2-4 3.515e-836197
Genome_Size_Range5:4-6 1.048e-18107184
Genome_Size_Range5:6-10 3.244e-83347
Genome_Size_Range9:1-2 2.058e-1014128
Genome_Size_Range9:2-3 1.630e-815120
Genome_Size_Range9:4-5 0.00001974996
Genome_Size_Range9:5-6 2.380e-125888
Genome_Size_Range9:6-8 1.167e-82938
Gram_Stain:Gram_Neg 6.270e-28167333
Gram_Stain:Gram_Pos 7.686e-208150
Habitat:Multiple 0.000749174178
Motility:No 2.165e-823151
Motility:Yes 7.151e-9119267
Optimal_temp.:25-30 2.632e-71719
Optimal_temp.:35-37 3.518e-71313
Oxygen_Req:Anaerobic 7.899e-109102
Oxygen_Req:Facultative 6.382e-689201
Pathogenic_in:Animal 0.00377103166
Pathogenic_in:No 0.007726962226
Shape:Coccus 2.113e-7882
Shape:Rod 1.188e-15156347
Shape:Sphere 0.0046342119
Shape:Spiral 0.0001428234
Temp._range:Hyperthermophilic 0.0060944223



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ORGANISMS CONTAINING AT MOST 1 GENES FROM THE GROUP:

Total number of orgs: 287
Effective number of orgs (counting one per cluster within 468 clusters): 243

Organism list
Homologs in each organism in the list
Features enriched in organism list


Follow (ncbi) link, when present, to find the set of organism features for each organism
Org ID  Org Name  # genes in group found in org  
ZMOB264203 ncbi Zymomonas mobilis mobilis ZM40
XFAS405440 ncbi Xylella fastidiosa M120
XFAS183190 ncbi Xylella fastidiosa Temecula10
XFAS160492 ncbi Xylella fastidiosa 9a5c0
WSUC273121 ncbi Wolinella succinogenes DSM 17400
WPIP955 Wolbachia pipientis0
WPIP80849 Wolbachia endosymbiont of Brugia malayi0
UURE95667 Ureaplasma urealyticum serovar 130
UURE95664 Ureaplasma urealyticum serovar 100
UPAR505682 ncbi Ureaplasma parvum serovar 3 str. ATCC 278150
UMET351160 ncbi uncultured methanogenic archaeon RC-I0
TWHI218496 ncbi Tropheryma whipplei TW08/270
TWHI203267 ncbi Tropheryma whipplei Twist0
TVOL273116 ncbi Thermoplasma volcanium GSS11
TTUR377629 ncbi Teredinibacter turnerae T79010
TTEN273068 ncbi Thermoanaerobacter tengcongensis MB40
TSP1755 Thermoanaerobacter sp.1
TPSE340099 ncbi Thermoanaerobacter pseudethanolicus ATCC 332231
TLET416591 ncbi Thermotoga lettingae TMO1
TKOD69014 ncbi Thermococcus kodakarensis KOD10
TELO197221 ncbi Thermosynechococcus elongatus BP-10
TDEN326298 ncbi Sulfurimonas denitrificans DSM 12510
TDEN292415 ncbi Thiobacillus denitrificans ATCC 252590
TDEN243275 ncbi Treponema denticola ATCC 354050
TCRU317025 ncbi Thiomicrospira crunogena XCL-20
TACI273075 ncbi Thermoplasma acidophilum DSM 17281
SWOL335541 ncbi Syntrophomonas wolfei wolfei Goettingen1
STRO369723 ncbi Salinispora tropica CNB-4400
STOK273063 ncbi Sulfolobus tokodaii 71
SSP84588 ncbi Synechococcus sp. WH 81020
SSP64471 ncbi Synechococcus sp. CC93110
SSP387093 ncbi Sulfurovum sp. NBC37-10
SSP1148 ncbi Synechocystis sp. PCC 68030
SSP1131 Synechococcus sp. CC96050
SSOL273057 ncbi Sulfolobus solfataricus P21
SRUB309807 ncbi Salinibacter ruber DSM 138550
SPYO370554 ncbi Streptococcus pyogenes MGAS107501
SPYO370553 ncbi Streptococcus pyogenes MGAS20961
SPYO370552 ncbi Streptococcus pyogenes MGAS102701
SPYO370551 ncbi Streptococcus pyogenes MGAS94291
SPYO319701 ncbi Streptococcus pyogenes MGAS61801
SPYO293653 ncbi Streptococcus pyogenes MGAS50051
SPYO286636 ncbi Streptococcus pyogenes MGAS103941
SPYO198466 ncbi Streptococcus pyogenes MGAS3151
SPYO193567 ncbi Streptococcus pyogenes SSI-11
SPYO186103 ncbi Streptococcus pyogenes MGAS82321
SPYO160490 ncbi Streptococcus pyogenes M1 GAS1
SPNE487213 ncbi Streptococcus pneumoniae Taiwan19F-141
SPNE171101 ncbi Streptococcus pneumoniae R61
SMUT210007 ncbi Streptococcus mutans UA1591
SMAR399550 ncbi Staphylothermus marinus F10
SFUM335543 ncbi Syntrophobacter fumaroxidans MPOB1
SERY405948 ncbi Saccharopolyspora erythraea NRRL 23381
SELO269084 ncbi Synechococcus elongatus PCC 63010
SARE391037 ncbi Salinispora arenicola CNS-2050
SAGA208435 ncbi Streptococcus agalactiae 2603V/R1
SAGA205921 ncbi Streptococcus agalactiae A9091
SACI56780 ncbi Syntrophus aciditrophicus SB0
SACI330779 ncbi Sulfolobus acidocaldarius DSM 6391
RTYP257363 ncbi Rickettsia typhi Wilmington0
RSP101510 ncbi Rhodococcus jostii RHA11
RSOL267608 ncbi Ralstonia solanacearum GMI10000
RSAL288705 ncbi Renibacterium salmoninarum ATCC 332091
RRIC452659 ncbi Rickettsia rickettsii Iowa0
RRIC392021 ncbi Rickettsia rickettsii Sheila Smith0
RPRO272947 ncbi Rickettsia prowazekii Madrid E0
RMAS416276 ncbi Rickettsia massiliae MTU50
RFEL315456 ncbi Rickettsia felis URRWXCal20
REUT381666 ncbi Ralstonia eutropha H160
REUT264198 ncbi Ralstonia eutropha JMP1340
RCON272944 ncbi Rickettsia conorii Malish 70
RCAN293613 ncbi Rickettsia canadensis McKiel0
RBEL391896 ncbi Rickettsia bellii OSU 85-3890
RBEL336407 ncbi Rickettsia bellii RML369-C0
RALB246199 Ruminococcus albus 80
RAKA293614 ncbi Rickettsia akari Hartford0
PTOR263820 ncbi Picrophilus torridus DSM 97900
PTHE370438 ncbi Pelotomaculum thermopropionicum SI1
PSP312153 ncbi Polynucleobacter necessarius asymbioticus QLW-P1DMWA-10
PSP117 Pirellula sp.0
PRUM264731 ncbi Prevotella ruminicola 230
PPEN278197 ncbi Pediococcus pentosaceus ATCC 257451
PMOB403833 ncbi Petrotoga mobilis SJ951
PMAR93060 ncbi Prochlorococcus marinus MIT 92150
PMAR74547 ncbi Prochlorococcus marinus MIT 93130
PMAR74546 ncbi Prochlorococcus marinus MIT 93120
PMAR59920 ncbi Prochlorococcus marinus NATL2A0
PMAR167555 ncbi Prochlorococcus marinus NATL1A0
PMAR167546 ncbi Prochlorococcus marinus MIT 93010
PMAR167542 ncbi Prochlorococcus marinus MIT 95150
PMAR167540 Prochlorococcus marinus pastoris MED4ax0
PMAR167539 ncbi Prochlorococcus marinus marinus CCMP13750
PMAR146891 ncbi Prochlorococcus marinus AS96010
PLUT319225 ncbi Chlorobium luteolum DSM 2730
PLUM243265 ncbi Photorhabdus luminescens laumondii TTO10
PISL384616 ncbi Pyrobaculum islandicum DSM 41841
PINT246198 Prevotella intermedia 170
PING357804 ncbi Psychromonas ingrahamii 370
PHOR70601 ncbi Pyrococcus horikoshii OT31
PHAL326442 ncbi Pseudoalteromonas haloplanktis TAC1250
PGIN242619 ncbi Porphyromonas gingivalis W830
PFUR186497 ncbi Pyrococcus furiosus DSM 36380
PCAR338963 ncbi Pelobacter carbinolicus DSM 23800
PATL342610 ncbi Pseudoalteromonas atlantica T6c0
PAST100379 Onion yellows phytoplasma1
PARS340102 ncbi Pyrobaculum arsenaticum DSM 135141
PARC259536 ncbi Psychrobacter arcticus 273-40
PAER178306 ncbi Pyrobaculum aerophilum IM21
PACN267747 ncbi Propionibacterium acnes KPA1712021
PABY272844 ncbi Pyrococcus abyssi GE51
OTSU357244 ncbi Orientia tsutsugamushi Boryong0
NSP387092 ncbi Nitratiruptor sp. SB155-20
NSEN222891 ncbi Neorickettsia sennetsu Miyayama0
NPHA348780 ncbi Natronomonas pharaonis DSM 21601
NOCE323261 ncbi Nitrosococcus oceani ATCC 197070
NFAR247156 ncbi Nocardia farcinica IFM 101521
NARO279238 ncbi Novosphingobium aromaticivorans DSM 124441
MXAN246197 ncbi Myxococcus xanthus DK 16221
MTUB419947 ncbi Mycobacterium tuberculosis H37Ra1
MTUB336982 ncbi Mycobacterium tuberculosis F111
MTHE349307 ncbi Methanosaeta thermophila PT0
MTHE264732 ncbi Moorella thermoacetica ATCC 390730
MTHE187420 ncbi Methanothermobacter thermautotrophicus Delta H0
MTBRV ncbi Mycobacterium tuberculosis H37Rv1
MTBCDC ncbi Mycobacterium tuberculosis CDC15511
MSYN262723 ncbi Mycoplasma synoviae 530
MSTA339860 ncbi Methanosphaera stadtmanae DSM 30910
MSED399549 ncbi Metallosphaera sedula DSM 53480
MPUL272635 ncbi Mycoplasma pulmonis UAB CTIP0
MPNE272634 ncbi Mycoplasma pneumoniae M1290
MPEN272633 ncbi Mycoplasma penetrans HF-20
MMYC272632 ncbi Mycoplasma mycoides mycoides SC str. PG10
MMOB267748 ncbi Mycoplasma mobile 163K0
MMAZ192952 ncbi Methanosarcina mazei Go10
MMAR444158 ncbi Methanococcus maripaludis C60
MMAR426368 ncbi Methanococcus maripaludis C70
MMAR402880 ncbi Methanococcus maripaludis C50
MMAR394221 ncbi Maricaulis maris MCS100
MMAR368407 ncbi Methanoculleus marisnigri JR10
MMAR267377 ncbi Methanococcus maripaludis S20
MLEP272631 ncbi Mycobacterium leprae TN0
MLAB410358 ncbi Methanocorpusculum labreanum Z0
MKAN190192 ncbi Methanopyrus kandleri AV191
MJAN243232 ncbi Methanocaldococcus jannaschii DSM 26611
MHYO295358 ncbi Mycoplasma hyopneumoniae 2320
MHYO262722 ncbi Mycoplasma hyopneumoniae 74480
MHYO262719 ncbi Mycoplasma hyopneumoniae J0
MHUN323259 ncbi Methanospirillum hungatei JF-10
MGEN243273 ncbi Mycoplasma genitalium G370
MFLO265311 ncbi Mesoplasma florum L11
MFLA265072 ncbi Methylobacillus flagellatus KT0
MCAP340047 ncbi Mycoplasma capricolum capricolum ATCC 273430
MBUR259564 ncbi Methanococcoides burtonii DSM 62420
MBOV410289 ncbi Mycobacterium bovis BCG str. Pasteur 1173P21
MBOV233413 ncbi Mycobacterium bovis AF2122/971
MBAR269797 ncbi Methanosarcina barkeri Fusaro0
MAVI243243 ncbi Mycobacterium avium 1041
MART243272 ncbi Mycoplasma arthritidis 158L3-10
MAER449447 ncbi Microcystis aeruginosa NIES-8430
MAEO419665 ncbi Methanococcus aeolicus Nankai-30
MACE188937 ncbi Methanosarcina acetivorans C2A0
MABS561007 ncbi Mycobacterium abscessus ATCC 199770
LXYL281090 ncbi Leifsonia xyli xyli CTCB071
LINT267671 ncbi Leptospira interrogans serovar Copenhageni str. Fiocruz L1-1300
LINT189518 ncbi Leptospira interrogans serovar Lai str. 566010
LDEL390333 ncbi Lactobacillus delbrueckii bulgaricus ATCC 118421
LDEL321956 ncbi Lactobacillus delbrueckii bulgaricus ATCC BAA-3651
LBOR355277 ncbi Leptospira borgpetersenii serovar Hardjo-bovis JB1970
LBOR355276 ncbi Leptospira borgpetersenii serovar Hardjo-bovis L5500
LBIF456481 ncbi Leptospira biflexa serovar Patoc strain Patoc 1 (Paris)1
LBIF355278 ncbi Leptospira biflexa serovar Patoc strain Patoc 1 (Ames)1
KRAD266940 ncbi Kineococcus radiotolerans SRS302161
ILOI283942 ncbi Idiomarina loihiensis L2TR0
IHOS453591 ncbi Ignicoccus hospitalis KIN4/I0
HSP64091 ncbi Halobacterium sp. NRC-11
HSAL478009 ncbi Halobacterium salinarum R11
HPYL85963 ncbi Helicobacter pylori J990
HPYL357544 ncbi Helicobacter pylori HPAG10
HPY ncbi Helicobacter pylori 266950
HNEP81032 Hyphomonas neptunium0
HMUK485914 ncbi Halomicrobium mukohataei DSM 122860
HMAR272569 ncbi Haloarcula marismortui ATCC 430491
HHEP235279 ncbi Helicobacter hepaticus ATCC 514490
HHAL349124 ncbi Halorhodospira halophila SL10
HBUT415426 ncbi Hyperthermus butylicus DSM 54560
HACI382638 ncbi Helicobacter acinonychis Sheeba0
GURA351605 ncbi Geobacter uraniireducens Rf40
GSUL243231 ncbi Geobacter sulfurreducens PCA0
GOXY290633 ncbi Gluconobacter oxydans 621H0
GMET269799 ncbi Geobacter metallireducens GS-150
GFOR411154 ncbi Gramella forsetii KT08030
GBET391165 ncbi Granulibacter bethesdensis CGDNIH10
FSUC59374 ncbi Fibrobacter succinogenes succinogenes S851
FSP106370 ncbi Frankia sp. CcI31
FJOH376686 ncbi Flavobacterium johnsoniae UW1010
ERUM302409 ncbi Ehrlichia ruminantium Gardel0
ERUM254945 ncbi Ehrlichia ruminantium Welgevonden0
ELIT314225 ncbi Erythrobacter litoralis HTCC25940
ECHA205920 ncbi Ehrlichia chaffeensis Arkansas0
ECAN269484 ncbi Ehrlichia canis Jake0
DSP255470 ncbi Dehalococcoides sp. CBDB10
DSP216389 ncbi Dehalococcoides sp. BAV10
DRED349161 ncbi Desulfotomaculum reducens MI-11
DPSY177439 ncbi Desulfotalea psychrophila LSv540
DOLE96561 ncbi Desulfococcus oleovorans Hxd30
DNOD246195 ncbi Dichelobacter nodosus VCS1703A0
DGEO319795 ncbi Deinococcus geothermalis DSM 113000
DETH243164 ncbi Dehalococcoides ethenogenes 1950
DARO159087 ncbi Dechloromonas aromatica RCB0
CVES412965 ncbi Candidatus Vesicomyosocius okutanii HA0
CTRA471473 ncbi Chlamydia trachomatis L2b/UCH-1/proctitis0
CTRA471472 ncbi Chlamydia trachomatis 434/Bu0
CTET212717 ncbi Clostridium tetani E880
CTEP194439 ncbi Chlorobium tepidum TLS0
CSUL444179 ncbi Candidatus Sulcia muelleri GWSS0
CRUT413404 ncbi Candidatus Ruthia magnifica Cm (Calyptogena magnifica)0
CPNE182082 ncbi Chlamydophila pneumoniae TW-1830
CPNE138677 ncbi Chlamydophila pneumoniae J1380
CPNE115713 ncbi Chlamydophila pneumoniae CWL0290
CPNE115711 ncbi Chlamydophila pneumoniae AR390
CPEL335992 ncbi Candidatus Pelagibacter ubique HTCC10620
CMUR243161 ncbi Chlamydia muridarum Nigg0
CMIC443906 ncbi Clavibacter michiganensis michiganensis NCPPB 3821
CMIC31964 ncbi Clavibacter michiganensis sepedonicus1
CMET456442 ncbi Candidatus Methanoregula boonei 6A80
CMAQ397948 ncbi Caldivirga maquilingensis IC-1671
CKOR374847 ncbi Candidatus Korarchaeum cryptofilum OPF81
CJEJ407148 ncbi Campylobacter jejuni jejuni 811160
CJEJ360109 ncbi Campylobacter jejuni doylei 269.970
CJEJ354242 ncbi Campylobacter jejuni jejuni 81-1760
CJEJ195099 ncbi Campylobacter jejuni RM12210
CJEJ192222 ncbi Campylobacter jejuni jejuni NCTC 111680
CJEI306537 ncbi Corynebacterium jeikeium K4110
CJAP155077 Cellvibrio japonicus0
CHYD246194 ncbi Carboxydothermus hydrogenoformans Z-29011
CHUT269798 ncbi Cytophaga hutchinsonii ATCC 334061
CHOM360107 ncbi Campylobacter hominis ATCC BAA-3810
CGLU196627 ncbi Corynebacterium glutamicum ATCC 130320
CFET360106 ncbi Campylobacter fetus fetus 82-400
CFEL264202 ncbi Chlamydophila felis Fe/C-560
CEFF196164 ncbi Corynebacterium efficiens YS-3140
CDIP257309 ncbi Corynebacterium diphtheriae NCTC 131290
CDES477974 ncbi Candidatus Desulforudis audaxviator MP104C1
CCUR360105 ncbi Campylobacter curvus 525.920
CCON360104 ncbi Campylobacter concisus 138260
CCHL340177 ncbi Chlorobium chlorochromatii CaD30
CCAV227941 ncbi Chlamydophila caviae GPIC0
CBUR434922 ncbi Coxiella burnetii Dugway 5J108-1110
CBUR360115 ncbi Coxiella burnetii RSA 3310
CBUR227377 ncbi Coxiella burnetii RSA 4930
CBLO291272 ncbi Candidatus Blochmannia pennsylvanicus BPEN0
CBLO203907 ncbi Candidatus Blochmannia floridanus0
CABO218497 ncbi Chlamydophila abortus S26/30
BTRI382640 ncbi Bartonella tribocorum CIP 1054761
BSUB ncbi Bacillus subtilis subtilis 1681
BSP107806 ncbi Buchnera aphidicola APS (Acyrthosiphon pisum)0
BQUI283165 ncbi Bartonella quintana Toulouse1
BLON206672 ncbi Bifidobacterium longum NCC27050
BHEN283166 ncbi Bartonella henselae Houston-11
BHAL272558 ncbi Bacillus halodurans C-1251
BCIC186490 Candidatus Baumannia cicadellinicola0
BBAC360095 ncbi Bartonella bacilliformis KC5831
BAPH372461 ncbi Buchnera aphidicola Cc (Cinara cedri)0
BAPH198804 ncbi Buchnera aphidicola Sg (Schizaphis graminum)0
BAMY326423 ncbi Bacillus amyloliquefaciens FZB421
AURANTIMONAS Aurantimonas manganoxydans SI85-9A10
ASP76114 ncbi Aromatoleum aromaticum EbN10
ASP62977 ncbi Acinetobacter sp. ADP10
ASP62928 ncbi Azoarcus sp. BH720
ASP232721 ncbi Acidovorax sp. JS420
ASP1667 Arthrobacter sp.1
APHA212042 ncbi Anaplasma phagocytophilum HZ0
APER272557 ncbi Aeropyrum pernix K11
ANAE240017 Actinomyces oris MG10
AMET293826 ncbi Alkaliphilus metalliredigens QYMF0
AMAR329726 ncbi Acaryochloris marina MBIC110170
AMAR234826 ncbi Anaplasma marginale St. Maries0
ALAI441768 ncbi Acholeplasma laidlawii PG-8A1
AFUL224325 ncbi Archaeoglobus fulgidus DSM 43040
AFER243159 ncbi Acidithiobacillus ferrooxidans ATCC 232700
AEHR187272 ncbi Alkalilimnicola ehrlichii MLHE-10
ADEH290397 ncbi Anaeromyxobacter dehalogenans 2CP-C0
ABUT367737 ncbi Arcobacter butzleri RM40180
ABOR393595 ncbi Alcanivorax borkumensis SK20
AAVE397945 ncbi Acidovorax citrulli AAC00-10
AAUR290340 ncbi Arthrobacter aurescens TC11
AAEO224324 ncbi Aquifex aeolicus VF50


Names of the homologs of the genes in the group in each of these orgs
  G6644   EG11632   EG11631   EG11630   EG11629   EG10751   EG10750   
ZMOB264203
XFAS405440
XFAS183190
XFAS160492
WSUC273121
WPIP955
WPIP80849
UURE95667
UURE95664
UPAR505682
UMET351160
TWHI218496
TWHI203267
TVOL273116 TVN1492
TTUR377629
TTEN273068
TSP1755 TETH514_2178
TPSE340099 TETH39_1496
TLET416591 TLET_0896
TKOD69014
TELO197221
TDEN326298
TDEN292415
TDEN243275
TCRU317025
TACI273075 TA1498
SWOL335541 SWOL_1007
STRO369723
STOK273063 ST0156
SSP84588
SSP64471
SSP387093
SSP1148
SSP1131
SSOL273057 SSO2554
SRUB309807
SPYO370554 MGAS10750_SPY0979
SPYO370553 MGAS2096_SPY0902
SPYO370552 MGAS10270_SPY0944
SPYO370551 MGAS9429_SPY0947
SPYO319701 M28_SPY0805
SPYO293653 M5005_SPY0828
SPYO286636 M6_SPY0826
SPYO198466 SPYM3_0766
SPYO193567 SPS0966
SPYO186103 SPYM18_1066
SPYO160490 SPY1104
SPNE487213 SPT_0888
SPNE171101 SPR1244
SMUT210007 SMU_975
SMAR399550
SFUM335543 SFUM_3496
SERY405948 SACE_5355
SELO269084
SARE391037
SAGA208435 SAG_1109
SAGA205921 SAK_1194
SACI56780
SACI330779 SACI_2141
RTYP257363
RSP101510 RHA1_RO05312
RSOL267608
RSAL288705 RSAL33209_0601
RRIC452659
RRIC392021
RPRO272947
RMAS416276
RFEL315456
REUT381666
REUT264198
RCON272944
RCAN293613
RBEL391896
RBEL336407
RALB246199
RAKA293614
PTOR263820
PTHE370438 PTH_2298
PSP312153
PSP117
PRUM264731
PPEN278197 PEPE_0739
PMOB403833 PMOB_1793
PMAR93060
PMAR74547
PMAR74546
PMAR59920
PMAR167555
PMAR167546
PMAR167542
PMAR167540
PMAR167539
PMAR146891
PLUT319225
PLUM243265
PISL384616 PISL_1188
PINT246198
PING357804
PHOR70601 PH0359
PHAL326442
PGIN242619
PFUR186497
PCAR338963
PATL342610
PAST100379 PAM661
PARS340102 PARS_0149
PARC259536
PAER178306 PAE0953
PACN267747 PPA0664
PABY272844 PAB1292
OTSU357244
NSP387092
NSEN222891
NPHA348780 NP3648A
NOCE323261
NFAR247156 NFA21040
NARO279238 SARO_2609
MXAN246197 MXAN_5630
MTUB419947 MRA_2885
MTUB336982 TBFG_12876
MTHE349307
MTHE264732
MTHE187420
MTBRV RV2860C
MTBCDC MT2928
MSYN262723
MSTA339860
MSED399549
MPUL272635
MPNE272634
MPEN272633
MMYC272632
MMOB267748
MMAZ192952
MMAR444158
MMAR426368
MMAR402880
MMAR394221
MMAR368407
MMAR267377
MLEP272631
MLAB410358
MKAN190192 MK0338
MJAN243232 MJ_1346
MHYO295358
MHYO262722
MHYO262719
MHUN323259
MGEN243273
MFLO265311 MFL509
MFLA265072
MCAP340047
MBUR259564
MBOV410289 BCG_2882C
MBOV233413 MB2885C
MBAR269797
MAVI243243 MAV_3718
MART243272
MAER449447
MAEO419665
MACE188937
MABS561007
LXYL281090 LXX10010
LINT267671
LINT189518
LDEL390333 LDB1472
LDEL321956 LBUL_1368
LBOR355277
LBOR355276
LBIF456481 LEPBI_I2652
LBIF355278 LBF_2571
KRAD266940 KRAD_1637
ILOI283942
IHOS453591
HSP64091 VNG2093G
HSAL478009 OE3922R
HPYL85963
HPYL357544
HPY
HNEP81032
HMUK485914
HMAR272569 RRNAC2872
HHEP235279
HHAL349124
HBUT415426
HACI382638
GURA351605
GSUL243231
GOXY290633
GMET269799
GFOR411154
GBET391165
FSUC59374 FSU2878
FSP106370 FRANCCI3_4059
FJOH376686
ERUM302409
ERUM254945
ELIT314225
ECHA205920
ECAN269484
DSP255470
DSP216389
DRED349161 DRED_2807
DPSY177439
DOLE96561
DNOD246195
DGEO319795
DETH243164
DARO159087
CVES412965
CTRA471473
CTRA471472
CTET212717
CTEP194439
CSUL444179
CRUT413404
CPNE182082
CPNE138677
CPNE115713
CPNE115711
CPEL335992
CMUR243161
CMIC443906 CMM_1634
CMIC31964 CMS1617
CMET456442
CMAQ397948 CMAQ_1766
CKOR374847 KCR_0976
CJEJ407148
CJEJ360109
CJEJ354242
CJEJ195099
CJEJ192222
CJEI306537
CJAP155077
CHYD246194 CHY_0704
CHUT269798 CHU_2502
CHOM360107
CGLU196627
CFET360106
CFEL264202
CEFF196164
CDIP257309
CDES477974 DAUD_2030
CCUR360105
CCON360104
CCHL340177
CCAV227941
CBUR434922
CBUR360115
CBUR227377
CBLO291272
CBLO203907
CABO218497
BTRI382640 BT_0597
BSUB BSU17460
BSP107806
BQUI283165 BQ02910
BLON206672
BHEN283166 BH03890
BHAL272558 BH2360
BCIC186490
BBAC360095 BARBAKC583_0295
BAPH372461
BAPH198804
BAMY326423 RBAM_017260
AURANTIMONAS
ASP76114
ASP62977
ASP62928
ASP232721
ASP1667 ARTH_1592
APHA212042
APER272557 APE0945
ANAE240017
AMET293826
AMAR329726
AMAR234826
ALAI441768 ACL_0473
AFUL224325
AFER243159
AEHR187272
ADEH290397
ABUT367737
ABOR393595
AAVE397945
AAUR290340 AAUR_PTC20213
AAEO224324


Organism features enriched in list (features available for 270 out of the 287 orgs in the list)
Feature    Pvalue       Num occurrences in list  Total num occurrences  
Arrangment:Aggregates 0.009798789
Arrangment:Clusters 0.0023214217
Arrangment:Pairs 6.370e-1122112
Disease:Pharyngitis 0.002000188
Disease:Wide_range_of_infections 0.00018801111
Disease:bronchitis_and_pneumonitis 0.002000188
Endospores:No 1.898e-11136211
Endospores:Yes 0.00037541353
GC_Content_Range4:0-40 0.0007884116213
GC_Content_Range4:60-100 0.000165249145
GC_Content_Range7:30-40 0.006146689166
GC_Content_Range7:40-50 0.006765865117
GC_Content_Range7:50-60 0.006566039107
GC_Content_Range7:60-70 0.000027642134
Genome_Size_Range5:0-2 1.068e-22123155
Genome_Size_Range5:4-6 2.239e-1739184
Genome_Size_Range5:6-10 9.938e-6847
Genome_Size_Range9:0-1 0.00002062327
Genome_Size_Range9:1-2 9.459e-17100128
Genome_Size_Range9:2-3 0.005280967120
Genome_Size_Range9:4-5 5.016e-62596
Genome_Size_Range9:5-6 8.218e-111488
Genome_Size_Range9:6-8 1.160e-6438
Gram_Stain:Gram_Neg 0.0016589138333
Habitat:Aquatic 0.00012865891
Habitat:Multiple 1.522e-852178
Habitat:Specialized 0.00048753653
Motility:No 0.000055590151
Motility:Yes 3.303e-697267
Optimal_temp.:25-30 0.0008078219
Optimal_temp.:25-35 0.0018148114
Oxygen_Req:Anaerobic 0.000019666102
Oxygen_Req:Facultative 9.805e-1059201
Oxygen_Req:Microaerophilic 0.00481791418
Pathogenic_in:Animal 0.00215892066
Pathogenic_in:Human 0.000384980213
Pathogenic_in:No 0.0034593119226
Shape:Irregular_coccus 1.569e-61717
Shape:Rod 8.542e-13119347
Shape:Sphere 0.00008201719
Shape:Spiral 0.00017912634
Temp._range:Hyperthermophilic 0.00004222023
Temp._range:Mesophilic 0.0005236204473



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ORGANISMS ENRICHED FOR GROUP:

Total number of orgs: 3
Effective number of orgs (counting one per cluster within 468 clusters): 3

Organism list
Homologs in each organism in the list
Features enriched in organism list


Follow (ncbi) link, when present, to find the set of organism features for each organism
Org ID  Org Name    Pvalue       # genes in tgt genome found in org  # genes in group found in org  
FNOD381764 ncbi Fervidobacterium nodosum Rt17-B1 0.00042226547
TERY203124 ncbi Trichodesmium erythraeum IMS101 0.00569179477
SSP321332 ncbi Synechococcus sp. JA-2-3Ba(2-13) 0.00617259587


Names of the homologs of the genes in the group in each of these orgs
  G6644   EG11632   EG11631   EG11630   EG11629   EG10751   EG10750   
FNOD381764 FNOD_0261FNOD_0372FNOD_0371FNOD_0370FNOD_1364FNOD_0372FNOD_0371
TERY203124 TERY_4681TERY_2802TERY_2818TERY_2805TERY_2816TERY_2802TERY_2818
SSP321332 CYB_1005CYB_2209CYB_1299CYB_2079CYB_0505CYB_2209CYB_1299


Organism features enriched in list (features available for 3 out of the 3 orgs in the list)
Feature    Pvalue       Num occurrences in list  Total num occurrences  
Temp._range:Thermophilic 0.0099239235



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ORGANISMS DEPLETED FOR GROUP:




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PHYLOGENETIC PROFILE SIMILARITY WITH KNOWN PATHWAYS:

Pathways or complexes with absolute value of Pearson coefficient with respect to candidate larger than 0.4 are listed below
The candidate is assumed to exist in orgs listed in section List of organisms containing most genes from the group


Pathway or complex  # Orgs containing it  # of those orgs also containing candidate  Pearson Coeff  
GLYCOCAT-PWY (glycogen degradation I)2461650.5874
COBALSYN-PWY (adenosylcobalamin salvage from cobinamide I)1951410.5660
PWY-4041 (γ-glutamyl cycle)2791730.5578
3-HYDROXYPHENYLACETATE-DEGRADATION-PWY (4-hydroxyphenylacetate degradation)1491170.5443
PWY0-1241 (ADP-L-glycero-β-D-manno-heptose biosynthesis)2181470.5391
PWY0-1319 (CDP-diacylglycerol biosynthesis II)2961750.5308
PWY4FS-7 (phosphatidylglycerol biosynthesis I (plastidic))2911730.5289
AST-PWY (arginine degradation II (AST pathway))120990.5155
PWY-5111 (CMP-KDO biosynthesis II (from D-arabinose 5-phosphate))3001740.5147
PWY-5148 (acyl-CoA hydrolysis)2271470.5133
TYRFUMCAT-PWY (tyrosine degradation I)1841290.5126
PHOSLIPSYN-PWY (phospholipid biosynthesis I)2901700.5107
GLUTATHIONESYN-PWY (glutathione biosynthesis)3391850.5038
PWY-5918 (heme biosynthesis I)2721620.4994
PWY0-845 (superpathway of pyridoxal 5'-phosphate biosynthesis and salvage)3291810.4978
PWY-1269 (CMP-KDO biosynthesis I)3251790.4928
HEME-BIOSYNTHESIS-II (heme biosynthesis from uroporphyrinogen-III I)2861650.4860
KDO-LIPASYN-PWY (KDO2-lipid A biosynthesis I)2251410.4762
PWY-46 (putrescine biosynthesis III)1381030.4738
PWY-5913 (TCA cycle variation IV)3011680.4714
ECASYN-PWY (enterobacterial common antigen biosynthesis)1911260.4679
NAGLIPASYN-PWY (lipid IVA biosynthesis)3481820.4643
4AMINOBUTMETAB-PWY (superpathway of 4-aminobutyrate degradation)2121340.4632
P344-PWY (acrylonitrile degradation)2101330.4618
ENTNER-DOUDOROFF-PWY (Entner-Doudoroff pathway I)2491480.4607
GLYCOLYSIS-E-D (superpathway of glycolysis and Entner-Doudoroff)2491480.4607
GALACTITOLCAT-PWY (galactitol degradation)73670.4565
PWY-5857 (ubiquinone-10 biosynthesis (prokaryotic))1831210.4559
PWY0-1329 (succinate to cytochrome bo oxidase electron transfer)96790.4486
UBISYN-PWY (ubiquinol-8 biosynthesis (prokaryotic))3981940.4483
PWY0-1335 (NADH to cytochrome bo oxidase electron transfer)112870.4461
GLUTAMINDEG-PWY (glutamine degradation I)1911230.4457
CHOLINE-BETAINE-ANA-PWY (choline degradation I)135980.4443
BETSYN-PWY (glycine betaine biosynthesis I (Gram-negative bacteria))138990.4409
PWY-5855 (ubiquinone-7 biosynthesis (prokaryotic))1911210.4308
PWY-5028 (histidine degradation II)130940.4306
GLUCONSUPER-PWY (D-gluconate degradation)2291360.4297
GALACTCAT-PWY (D-galactonate degradation)104810.4285
PWY0-981 (taurine degradation IV)106820.4284
PWY-5938 ((R)-acetoin biosynthesis I)3761850.4279
LIPA-CORESYN-PWY (Lipid A-core biosynthesis)1761140.4256
PLPSAL-PWY (pyridoxal 5'-phosphate salvage pathway)3741830.4180
PYRIDOXSYN-PWY (pyridoxal 5'-phosphate biosynthesis I)4221960.4175
PWY-5856 (ubiquinone-9 biosynthesis (prokaryotic))2551440.4175
P601-PWY (D-camphor degradation)95750.4156
GLUCARDEG-PWY (D-glucarate degradation I)1521020.4135
PWY-3162 (tryptophan degradation V (side chain pathway))94740.4111
PWY-6087 (4-chlorocatechol degradation)2231310.4106
CATECHOL-ORTHO-CLEAVAGE-PWY (catechol degradation to β-ketoadipate)103780.4056
PWY0-1353 (succinate to cytochrome bd oxidase electron transfer)1781120.4040
PWY-6389 ((S)-acetoin biosynthesis)3681790.4023



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PAIRWISE GENOME CONTEXT SCORE MATRIX:

  EG11632   EG11631   EG11630   EG11629   EG10751   EG10750   
G66440.9988310.9988560.998950.9989470.9986260.998868
EG116320.9999630.9999120.9997790.9999660.999954
EG116310.9999390.9997630.9999380.999956
EG116300.9997450.9998740.999911
EG116290.999720.999714
EG107510.999969
EG10750



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PAIRWISE BLAST SCORES:

  G6644   EG11632   EG11631   EG11630   EG11629   EG10751   EG10750   
G66440.0f0------
EG11632-0.0f0---1.5e-38-
EG11631--0.0f0---1.6e-50
EG11630---0.0f0---
EG11629----0.0f0--
EG10751-3.2e-45---0.0f0-
EG10750--7.6e-53---0.0f0



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PATHWAYS OR PROTEIN COMPLEX MATCHES IN TARGET ORG:

For each case, all genes involved in the pathway or complex are listed. For each gene we list: a tag indicating whether the gene is part of the candidate list or not, the average and the minimum scores of the gene to the candidate list, the gene name, and its product names.

- ABC-25-CPLX (putrescine ABC transporter) (degree of match pw to cand: 1.000, degree of match cand to pw: 0.571, average score: 1.000)
  Genes in pathway or complex:
   *in cand* 0.9997 0.9989 EG11629 (potF) POTF-MONOMER (PotF)
   *in cand* 0.9998 0.9988 EG11632 (potI) POTI-MONOMER (PotI)
   *in cand* 0.9998 0.9989 EG11631 (potH) POTH-MONOMER (PotH)
   *in cand* 0.9998 0.9990 EG11630 (potG) POTG-MONOMER (PotG)
  Genes in candidate but not in this pathway or complex:
   *in cand* 0.9998 0.9989 EG10750 (potB) POTB-MONOMER (PotB)
   *in cand* 0.9997 0.9986 EG10751 (potC) POTC-MONOMER (PotC)
   *in cand* 0.9990 0.9986 G6644 (puuA) G6644-MONOMER (glutamate-putrescine ligase)

- ABC-24-CPLX (putrescine/spermidine ABC transporter) (degree of match pw to cand: 0.500, degree of match cand to pw: 0.286, average score: 1.000)
  Genes in pathway or complex:
             0.9994 0.9970 EG10752 (potD) POTD-MONOMER (PotD)
   *in cand* 0.9997 0.9986 EG10751 (potC) POTC-MONOMER (PotC)
   *in cand* 0.9998 0.9989 EG10750 (potB) POTB-MONOMER (PotB)
             0.9991 0.9950 EG10749 (potA) POTA-MONOMER (PotA)
  Genes in candidate but not in this pathway or complex:
   *in cand* 0.9997 0.9989 EG11629 (potF) POTF-MONOMER (PotF)
   *in cand* 0.9998 0.9990 EG11630 (potG) POTG-MONOMER (PotG)
   *in cand* 0.9998 0.9989 EG11631 (potH) POTH-MONOMER (PotH)
   *in cand* 0.9998 0.9988 EG11632 (potI) POTI-MONOMER (PotI)
   *in cand* 0.9990 0.9986 G6644 (puuA) G6644-MONOMER (glutamate-putrescine ligase)



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GENOME CONTEXT INFORMATION:

Each row corresponds to a replicon in an organism, each column to a gene in the candidate. The second column indicates whether the organims was included in the list used to compute the genome context scores or not. Some organisms are not included because they are phylogenetically too similar to others already in the list.
The number in the matrix indicate the position of the homolog of the gene in the replicon. All numbers are relative to the smaller one, which is assigned a position of zero. Two columns with the same number indicate that the two genes matched the same gene in that organism.

Genome browser links for gene clusters

The links below opens a genome browser BioCyc page for each cluster of genes in the target genome. These pages shows the central gene of the cluster in the target genome and its best homolog in the reference genomes, for the genomes that contain homologs for at least 75% of the genes in the group. Only one genome per phylogenetic cluster of organisms is shown, to keep the list smaller.

EG11629 EG11630 EG11631 EG11632 (centered at EG11631)
EG10750 EG10751 (centered at EG10750)
G6644 (centered at G6644)


ORG:REPLICON:CIRC?\GENE  IN REF LIST  G6644   EG11632   EG11631   EG11630   EG11629   EG10751   EG10750   
247/623297/623268/623252/623240/623328/623288/623
AAUR290340:0:Tyes0------
ABAC204669:0:Tyes-10---0
ABAU360910:0:Tyes-012301
ACAU438753:0:Tyes2209207420752076020742075
ACEL351607:0:Tyes0185-188-185-
ACRY349163:8:Tyes71-30-2
AHYD196024:0:Tyes6012401
ALAI441768:0:Tyes-0-----
AORE350688:0:Tyes-01--01
APER272557:0:Tyes----0--
APLE416269:0:Tyes-210-21
APLE434271:0:Tno-210-21
ASAL382245:5:Tyes0654265
ASP1667:3:Tyes0------
AVAR240292:3:Tyes-276502-27650
AYEL322098:4:Tyes-0---0-
BABO262698:0:Tno0-543---543
BABO262698:1:Tno-0-120-
BAFZ390236:2:Fyes-01--01
BAMB339670:2:Tno0------
BAMB339670:3:Tno-140001398214000
BAMB398577:2:Tno0------
BAMB398577:3:Tno-011252312541
BAMY326423:0:Tyes0------
BANT260799:0:Tno233310--10
BANT261594:2:Tno230610--10
BANT568206:2:Tyes024752476--24752476
BANT592021:2:Tno246710--10
BBAC264462:0:Tyes-10--10
BBAC360095:0:Tyes0------
BBRO257310:0:Tyes-012301
BBUR224326:21:Fno-01--01
BCAN483179:0:Tno0------
BCAN483179:1:Tno-012301
BCEN331271:0:Tno--2-0-2
BCEN331271:1:Tno0------
BCEN331271:2:Tno-2-0-2-
BCEN331272:2:Tyes0------
BCEN331272:3:Tyes-124701245212470
BCER226900:1:Tyes-10--10
BCER288681:0:Tno226610--10
BCER315749:1:Tyes128510--10
BCER405917:1:Tyes218610--10
BCER572264:1:Tno243010--10
BCLA66692:0:Tyes0--1481--1039
BFRA272559:1:Tyes-0---0-
BFRA295405:0:Tno-0---0-
BGAR290434:2:Fyes-01---1
BHAL272558:0:Tyes0------
BHEN283166:0:Tyes0------
BHER314723:0:Fyes-01---1
BJAP224911:0:Fyes0504850495050172650485049
BLIC279010:0:Tyes1558--0---
BMAL243160:1:Tno0558559560561558559
BMAL320388:1:Tno555012301
BMAL320389:1:Tyes599012301
BMEL224914:0:Tno0------
BMEL224914:1:Tno-321032
BMEL359391:0:Tno0-540---540
BMEL359391:1:Tno-0-120-
BOVI236:0:Tyes345--0---
BOVI236:1:Tyes----0--
BPAR257311:0:Tno-321032
BPER257313:0:Tyes-012301
BPET94624:0:Tyes-321032
BPSE272560:0:Tyes-0-2---
BPSE272560:1:Tyes776-2-032
BPSE320372:0:Tno-0-2---
BPSE320372:1:Tno426-1-301
BPSE320373:0:Tno-0-2---
BPSE320373:1:Tno2437-1929-193101929
BPUM315750:0:Tyes1347--0---
BQUI283165:0:Tyes0------
BSP36773:0:Tyes-----01
BSP36773:1:Tyes02007-----
BSP36773:2:Tyes--013212--
BSP376:0:Tyes-210329821
BSUB:0:Tyes0------
BSUI204722:0:Tyes0------
BSUI204722:1:Tyes-012301
BSUI470137:0:Tno0------
BSUI470137:1:Tno-012301
BTHA271848:0:Tno-0-----
BTHA271848:1:Tno0-440439438441440
BTHE226186:0:Tyes-0---0-
BTHU281309:1:Tno225710--10
BTHU412694:1:Tno206710--10
BTRI382640:1:Tyes0------
BTUR314724:0:Fyes-01--01
BVIE269482:6:Tyes0------
BVIE269482:7:Tyes-138001378213800
BWEI315730:4:Tyes219310--10
BXEN266265:1:Tyes0543254
CACE272562:1:Tyes-01--01
CAULO:0:Tyes4120312
CBEI290402:0:Tyes0728729730-728729
CBOT36826:1:Tno-210-21
CBOT441770:0:Tyes-210-21
CBOT441771:0:Tno-210-21
CBOT441772:1:Tno-210-21
CBOT498213:1:Tno-210-21
CBOT508765:1:Tyes-012-01
CBOT515621:2:Tyes-210-21
CBOT536232:0:Tno-210-21
CDES477974:0:Tyes0------
CDIF272563:1:Tyes-10--10
CHUT269798:0:Tyes0------
CHYD246194:0:Tyes0------
CKLU431943:1:Tyes--02--0
CKOR374847:0:Tyes0------
CMAQ397948:0:Tyes0------
CMIC31964:2:Tyes0------
CMIC443906:2:Tyes0------
CNOV386415:0:Tyes-10--10
CPER195102:1:Tyes-10-210
CPER195103:0:Tno-10-210
CPER289380:3:Tyes-10-210
CPHY357809:0:Tyes0265266--265266
CPRO264201:0:Fyes-210-21
CPSY167879:0:Tyes4452444944484447044494448
CSAL290398:0:Tyes01314-121314
CSP501479:6:Fyes0------
CSP501479:7:Fyes-211021
CSP78:2:Tyes4120-12
CVIO243365:0:Tyes709644643064228392840
DDES207559:0:Tyes-210-21
DHAF138119:0:Tyes290210--10
DRAD243230:3:Tyes-210-2-
DRED349161:0:Tyes0------
DSHI398580:5:Tyes642120--2
DVUL882:1:Tyes-123012
ECAR218491:0:Tyes-22422522622710
ECOL199310:0:Tno-3210391468
ECOL316407:0:Tno4523210270271
ECOL331111:6:Tno5573210310347
ECOL362663:0:Tno-3210247248
ECOL364106:1:Tno-3210395396
ECOL405955:2:Tyes-3210277278
ECOL409438:6:Tyes4423210281282
ECOL413997:0:Tno4133210265266
ECOL439855:4:Tno921321010961095
ECOL469008:0:Tno0417418419420153152
ECOL481805:0:Tno0414415416417154153
ECOL585034:0:Tno4273210267268
ECOL585035:0:Tno-3210253254
ECOL585055:0:Tno5653210339340
ECOL585056:2:Tno5603210262325
ECOL585057:0:Tno825321011881187
ECOL585397:0:Tno-245010449450
ECOL83334:0:Tno9553210576646
ECOLI:0:Tno4573210271272
ECOO157:0:Tno12923210645708
EFAE226185:3:Tyes-1--012
EFER585054:1:Tyes-3210289290
ESP42895:1:Tyes-3210271272
FALN326424:0:Tyes0403-400-403-
FMAG334413:1:Tyes-10-210
FNOD381764:0:Tyes01141131121132114113
FNUC190304:0:Tyes-21095021
FPHI484022:1:Tyes-21012221
FRANT:0:Tno-72717007271
FSP106370:0:Tyes0------
FSP1855:0:Tyes6340-2---
FSUC59374:0:Tyes----0--
FTUL351581:0:Tno-01278301
FTUL393011:0:Tno-01269401
FTUL393115:0:Tyes-71706907170
FTUL401614:0:Tyes-1641651660164165
FTUL418136:0:Tno-21010721
FTUL458234:0:Tno-01271301
GKAU235909:1:Tyes6041--210
GTHE420246:1:Tyes548-2562-210
GVIO251221:0:Tyes-42434404243
HARS204773:0:Tyes-123012
HAUR316274:2:Tyes2985210321
HCHE349521:0:Tyes3976123012
HDUC233412:0:Tyes-21045021
HINF281310:0:Tyes-106910681067010691068
HINF374930:0:Tyes-6586596600658659
HINF71421:0:Tno-8288298300828829
HMAR272569:8:Tyes--0----
HMOD498761:0:Tyes77210-21
HSAL478009:4:Tyes0------
HSOM205914:1:Tyes-1111101090111110
HSOM228400:0:Tno-45444304544
HSP64091:2:Tno0------
HWAL362976:1:Tyes--10--1
JSP290400:1:Tyes0197312881286--1288
JSP375286:0:Tyes-123012
KPNE272620:2:Tyes5312517651755174517301
KRAD266940:2:Fyes0------
LACI272621:0:Tyes740-----0
LBIF355278:2:Tyes---0---
LBIF456481:2:Tno---0---
LBRE387344:2:Tyes-1---10
LCAS321967:1:Tyes0549--550549-
LCHO395495:0:Tyes6012301
LDEL321956:0:Tyes0------
LDEL390333:0:Tyes0------
LGAS324831:0:Tyes88----0-
LHEL405566:0:Tyes613-----0
LINN272626:1:Tno-1--210
LINT363253:3:Tyes-210-21
LJOH257314:0:Tyes678---10-
LLAC272622:5:Tyes1153----10
LLAC272623:0:Tyes1035---10-
LMES203120:1:Tyes5030---0-
LMON169963:0:Tno-1--210
LMON265669:0:Tyes-1--210
LPLA220668:0:Tyes10900----1
LPNE272624:0:Tno1111012-01
LPNE297245:1:Fno1036012-01
LPNE297246:1:Fyes107301--01
LPNE400673:0:Tno1092012-01
LREU557436:0:Tyes0448---448-
LSAK314315:0:Tyes0----4041
LSPH444177:1:Tyes----0-2
LWEL386043:0:Tyes-1--210
LXYL281090:0:Tyes0------
MAQU351348:2:Tyes-177017691768176710
MAVI243243:0:Tyes0------
MBOV233413:0:Tno0------
MBOV410289:0:Tno0------
MCAP243233:0:Tyes-12-012
MEXT419610:0:Tyes-1721731740172173
MFLO265311:0:Tyes-0-----
MGIL350054:3:Tyes933013-01
MJAN243232:2:Tyes0------
MKAN190192:0:Tyes0------
MLOT266835:2:Tyes0116711661165153711671166
MMAG342108:0:Tyes-012301
MPET420662:1:Tyes0543254
MSME246196:0:Tyes3142259926000-25992600
MSP164756:1:Tno0205320542056-20532054
MSP164757:0:Tno0208520862088-20852086
MSP189918:2:Tyes0207920802082-20792080
MSP266779:3:Tyes0543254
MSP400668:0:Tyes4012301
MSP409:2:Tyes-141714161415014171416
MSUC221988:0:Tyes-123012
MTBCDC:0:Tno0------
MTBRV:0:Tno0------
MTUB336982:0:Tno0------
MTUB419947:0:Tyes0------
MVAN350058:0:Tyes01771-1768-17711770
MXAN246197:0:Tyes0------
NARO279238:0:Tyes0------
NEUR228410:0:Tyes-210321
NEUT335283:2:Tyes-210321
NFAR247156:2:Tyes0------
NGON242231:0:Tyes-21096521
NHAM323097:2:Tyes-10-25410
NMEN122586:0:Tno-21094521
NMEN122587:0:Tyes-21091621
NMEN272831:0:Tno-21083821
NMEN374833:0:Tno-1-09371-
NMUL323848:3:Tyes-123012
NPHA348780:2:Tyes---0---
NSP103690:6:Tyes-037513753--3751
NSP35761:1:Tyes0-640630-639640
NWIN323098:0:Tyes-21023621
OANT439375:4:Tyes11012301
OCAR504832:0:Tyes-210139221
OIHE221109:0:Tyes-1--210
PABY272844:0:Tyes0------
PACN267747:0:Tyes0------
PAER178306:0:Tyes----0--
PAER208963:0:Tyes0876341111021103
PAER208964:0:Tno0876112833543353
PARS340102:0:Tyes----0--
PAST100379:0:Tyes-----0-
PCRY335284:1:Tyes-012191801
PDIS435591:0:Tyes-1--01-
PENT384676:0:Tyes7012401
PFLU205922:0:Tyes3332133221332510290
PFLU216595:1:Tyes8012401
PFLU220664:0:Tyes4013530353201
PHOR70601:0:Tyes0------
PISL384616:0:Tyes----0--
PMEN399739:0:Tyes0876387
PMOB403833:0:Tyes0------
PMUL272843:1:Tyes-123012
PNAP365044:8:Tyes50123-1
PPEN278197:0:Tyes0------
PPRO298386:1:Tyes0------
PPRO298386:2:Tyes-210421
PPUT160488:0:Tno122012401
PPUT351746:0:Tyes7012401
PPUT76869:0:Tno110012401
PSP296591:2:Tyes-3210-2
PSP56811:2:Tyes-210321
PSTU379731:0:Tyes0876487
PSYR205918:0:Tyes7012401
PSYR223283:2:Tyes9012601
PTHE370438:0:Tyes0------
RCAS383372:0:Tyes631123012
RDEN375451:4:Tyes1620012301
RETL347834:5:Tyes594321032
RFER338969:1:Tyes05432-4
RLEG216596:6:Tyes701321032
RMET266264:1:Tyes-123012
RPAL258594:0:Tyes027742775277661227742775
RPAL316055:0:Tyes-204820492050020482049
RPAL316056:0:Tyes-185018511852018501851
RPAL316057:0:Tyes-21065521
RPAL316058:0:Tyes03213203192237321320
RPOM246200:1:Tyes0211921202121212221192120
RRUB269796:1:Tyes238012301
RSAL288705:0:Tyes0------
RSP101510:3:Fyes0------
RSP357808:0:Tyes0589587586590589587
RSPH272943:3:Tyes---0---
RSPH272943:4:Tyes08621496---863
RSPH349101:1:Tno---0---
RSPH349101:2:Tno08461437---847
RSPH349102:5:Tyes16570786784--1
RXYL266117:0:Tyes0187018691867186818701869
SACI330779:0:Tyes0------
SAGA205921:0:Tno-----0-
SAGA208435:0:Tno-----0-
SAGA211110:0:Tyes623----0-
SALA317655:1:Tyes4120312
SAUR158878:1:Tno210---10-
SAUR158879:1:Tno207---10-
SAUR196620:0:Tno209---10-
SAUR273036:0:Tno200---10-
SAUR282458:0:Tno211---10-
SAUR282459:0:Tno212---10-
SAUR359786:1:Tno204---10-
SAUR359787:1:Tno208---10-
SAUR367830:3:Tno199---10-
SAUR418127:0:Tyes207---10-
SAUR426430:0:Tno251---10-
SAUR93061:0:Fno222---10-
SAUR93062:1:Tno214---10-
SAVE227882:1:Fyes50630859860-858859
SBAL399599:3:Tyes0432143
SBAL402882:1:Tno0432143
SBOY300268:1:Tyes916321010841061
SCO:2:Fyes0-41024101-4103-
SDEG203122:0:Tyes-012301
SDEN318161:0:Tyes4012301
SDYS300267:1:Tyes1142012312201219
SENT209261:0:Tno-31131231331420
SENT220341:0:Tno-3210313315
SENT295319:0:Tno-24524624724820
SENT321314:2:Tno-3210306309
SENT454169:2:Tno-3210322326
SEPI176279:1:Tyes186----0-
SEPI176280:0:Tno189----0-
SERY405948:0:Tyes0------
SFLE198214:0:Tyes4763210306307
SFLE373384:0:Tno452212890287288
SFUM335543:0:Tyes---0---
SGLO343509:3:Tyes-321032
SGOR29390:0:Tyes0----575574
SHAE279808:0:Tyes0252--251252-
SHAL458817:0:Tyes0432143
SHIGELLA:0:Tno4863210323324
SLAC55218:1:Fyes899321032
SLOI323850:0:Tyes0432143
SMED366394:3:Tyes2079321032
SMEL266834:2:Tyes1822321032
SMUT210007:0:Tyes-----0-
SONE211586:1:Tyes0543254
SPEA398579:0:Tno0432143
SPNE1313:0:Tyes----01-
SPNE170187:0:Tyes----01-
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