CANDIDATE ID: 291

CANDIDATE ID: 291

NUMBER OF GENES: 7
AVERAGE SCORE:    9.9950762e-1 (range=[0.0,1.0])
AVERAGE MINIMUM BLAST P-VAL:    1.0000000e+0

Gene List
List of organisms containing most genes from the group
    Phylogenetic tree highlighting these organisms (opens new page)
List of organisms containing very few or no genes from the group
List of organisms enriched for group
List of organisms depleted for group
Phylogenetic profile similarity with known pathways
Pairwise genome context scores
Pairwise Blast scores
Pathway or protein complex matches in target organism
Genome context matrix
    Genes and their orthologs in genome browser BioCyc pages



GENE LIST:

- EG11218 (creB) (b4398)
   Products of gene:
     - CREB-MONOMER (CreB transcriptional regulator)
     - PHOSPHO-CREB (CreB-Phosphorylated transcriptional regulator)
       Regulatees:
        TU0-14683 (creD)

- EG10784 (pstC) (b3727)
   Products of gene:
     - PSTC-MONOMER (PstC)
     - ABC-27-CPLX (phosphate ABC transporter)
       Reactions:
        ATP + phosphate[periplasmic space] + H2O  ->  ADP + 2 phosphate[cytosol]

- EG10783 (pstB) (b3725)
   Products of gene:
     - PSTB-MONOMER (PstB)
     - ABC-27-CPLX (phosphate ABC transporter)
       Reactions:
        ATP + phosphate[periplasmic space] + H2O  ->  ADP + 2 phosphate[cytosol]

- EG10782 (pstA) (b3726)
   Products of gene:
     - PSTA-MONOMER (PstA)
     - ABC-27-CPLX (phosphate ABC transporter)
       Reactions:
        ATP + phosphate[periplasmic space] + H2O  ->  ADP + 2 phosphate[cytosol]

- EG10735 (phoU) (b3724)
   Products of gene:
     - EG10735-MONOMER (PhoU phosphate transport system protein)

- EG10733 (phoR) (b0400)
   Products of gene:
     - PHOSPHO-PHOR (PhoR sensory histidine kinase - phosphorylated)
     - PHOR-MONOMER (PhoR)
     - PHOR-CPLX (PhoR sensory histidine kinase)

- EG10728 (phoB) (b0399)
   Products of gene:
     - PHOB-MONOMER (PhoB transcriptional dual regulator)
       Regulatees:
        TU0-13818 (pitB)
        TU0-13999 (yibD)
        TU0-6422 (amn)
        TU0-1341 (argP)
        TU0-1701 (asr)
        TU27 (eda)
        TU864 (phoH)
        TU0-14693 (pstSCA)
        TU0-14692 (pstS)
        TU00202 (pstSCAB-phoU)
        TU00201 (phnCDEEFGHIJKLMNOP)
        TU00086 (phoE)
        TU0-2021 (psiE)
        TU0-5982 (ugpBAECQ)
        TU0-5981 (ugpBAECQ)
        TU00053 (phoBR)
        TU00052 (phoA-psiF)
     - PHOSPHO-PHOB (PhoB-Phosphorylated transcriptional dual regulator)
       Regulatees:
        TU0-13818 (pitB)
        TU0-13999 (yibD)
        TU0-6422 (amn)
        TU0-1341 (argP)
        TU0-1701 (asr)
        TU27 (eda)
        TU864 (phoH)
        TU0-14693 (pstSCA)
        TU0-14692 (pstS)
        TU00202 (pstSCAB-phoU)
        TU00201 (phnCDEEFGHIJKLMNOP)
        TU00086 (phoE)
        TU0-2021 (psiE)
        TU0-5982 (ugpBAECQ)
        TU0-5981 (ugpBAECQ)
        TU00053 (phoBR)
        TU00052 (phoA-psiF)



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ORGANISMS CONTAINING AT LEAST 6 GENES FROM THE GROUP:

Total number of orgs: 207
Effective number of orgs (counting one per cluster within 468 clusters): 140

Organism list
Homologs in each organism in the list
Features enriched in organism list


Follow (ncbi) link, when present, to find the set of organism features for each organism
Org ID  Org Name  # genes in group found in org  
ZMOB264203 ncbi Zymomonas mobilis mobilis ZM47
YPSE349747 ncbi Yersinia pseudotuberculosis IP 317587
YPSE273123 ncbi Yersinia pseudotuberculosis IP 329537
YPES386656 ncbi Yersinia pestis Pestoides F7
YPES377628 ncbi Yersinia pestis Nepal5167
YPES360102 ncbi Yersinia pestis Antiqua7
YPES349746 ncbi Yersinia pestis Angola7
YPES214092 ncbi Yersinia pestis CO927
YPES187410 ncbi Yersinia pestis KIM 107
YENT393305 ncbi Yersinia enterocolitica enterocolitica 80817
XORY360094 ncbi Xanthomonas oryzae pv. oryzae PXO99A6
XORY342109 ncbi Xanthomonas oryzae pv. oryzae MAFF 3110186
XORY291331 ncbi Xanthomonas oryzae pv. oryzae KACC103316
XFAS183190 ncbi Xylella fastidiosa Temecula16
XFAS160492 ncbi Xylella fastidiosa 9a5c6
XCAM487884 Xanthomonas campestris pv. paulliniae7
XCAM316273 ncbi Xanthomonas campestris pv. vesicatoria str. 85-107
XCAM314565 ncbi Xanthomonas campestris pv. campestris str. 80047
XCAM190485 ncbi Xanthomonas campestris pv. campestris str. ATCC 339137
XAXO190486 ncbi Xanthomonas axonopodis pv. citri str. 3067
XAUT78245 ncbi Xanthobacter autotrophicus Py27
VEIS391735 ncbi Verminephrobacter eiseniae EF01-26
TTEN273068 ncbi Thermoanaerobacter tengcongensis MB47
TSP1755 Thermoanaerobacter sp.7
TPSE340099 ncbi Thermoanaerobacter pseudethanolicus ATCC 332237
TDEN292415 ncbi Thiobacillus denitrificans ATCC 252596
STYP99287 ncbi Salmonella enterica enterica serovar Typhimurium str. LT27
STHE292459 ncbi Symbiobacterium thermophilum IAM 148637
SSP644076 Silicibacter sp. TrichCH4B6
SSP292414 ncbi Ruegeria sp. TM10406
SSON300269 ncbi Shigella sonnei Ss0467
SPRO399741 ncbi Serratia proteamaculans 5687
SMEL266834 ncbi Sinorhizobium meliloti 10216
SHIGELLA ncbi Shigella flexneri 2a str. 2457T7
SHAE279808 ncbi Staphylococcus haemolyticus JCSC14356
SFLE373384 ncbi Shigella flexneri 5 str. 84017
SFLE198214 ncbi Shigella flexneri 2a str. 3017
SEPI176280 ncbi Staphylococcus epidermidis ATCC 122287
SEPI176279 ncbi Staphylococcus epidermidis RP62A7
SENT454169 ncbi Salmonella enterica enterica serovar Heidelberg str. SL4767
SENT321314 ncbi Salmonella enterica enterica serovar Choleraesuis str. SC-B677
SENT295319 ncbi Salmonella enterica enterica serovar Paratyphi A str. ATCC 91507
SENT220341 ncbi Salmonella enterica enterica serovar Typhi str. CT187
SENT209261 ncbi Salmonella enterica enterica serovar Typhi str. Ty27
SDYS300267 ncbi Shigella dysenteriae Sd1976
SDEG203122 ncbi Saccharophagus degradans 2-406
SCO ncbi Streptomyces coelicolor A3(2)6
SBOY300268 ncbi Shigella boydii Sb2277
SAUR93062 ncbi Staphylococcus aureus aureus COL7
SAUR93061 ncbi Staphylococcus aureus aureus NCTC 83257
SAUR426430 ncbi Staphylococcus aureus aureus Newman7
SAUR418127 ncbi Staphylococcus aureus aureus Mu37
SAUR367830 Staphylococcus aureus aureus USA3006
SAUR359787 ncbi Staphylococcus aureus aureus JH17
SAUR359786 ncbi Staphylococcus aureus aureus JH97
SAUR282459 ncbi Staphylococcus aureus aureus MSSA4767
SAUR282458 ncbi Staphylococcus aureus aureus MRSA2527
SAUR273036 ncbi Staphylococcus aureus RF1226
SAUR196620 ncbi Staphylococcus aureus aureus MW27
SAUR158879 ncbi Staphylococcus aureus aureus N3157
SAUR158878 ncbi Staphylococcus aureus aureus Mu507
SALA317655 ncbi Sphingopyxis alaskensis RB22566
SAGA211110 ncbi Streptococcus agalactiae NEM3166
SAGA208435 ncbi Streptococcus agalactiae 2603V/R6
SAGA205921 ncbi Streptococcus agalactiae A9096
SACI56780 ncbi Syntrophus aciditrophicus SB7
RXYL266117 ncbi Rubrobacter xylanophilus DSM 99416
RSPH349102 ncbi Rhodobacter sphaeroides ATCC 170256
RSPH349101 ncbi Rhodobacter sphaeroides ATCC 170296
RSPH272943 ncbi Rhodobacter sphaeroides 2.4.16
RSP357808 ncbi Roseiflexus sp. RS-17
RSOL267608 ncbi Ralstonia solanacearum GMI10007
RRUB269796 ncbi Rhodospirillum rubrum ATCC 111706
RPOM246200 ncbi Ruegeria pomeroyi DSS-36
RPAL316058 ncbi Rhodopseudomonas palustris HaA27
RPAL316057 ncbi Rhodopseudomonas palustris BisB57
RPAL316056 ncbi Rhodopseudomonas palustris BisB187
RPAL316055 ncbi Rhodopseudomonas palustris BisA537
RPAL258594 ncbi Rhodopseudomonas palustris CGA0097
RMET266264 ncbi Ralstonia metallidurans CH347
RLEG216596 ncbi Rhizobium leguminosarum bv. viciae 38417
RFER338969 ncbi Rhodoferax ferrireducens T1187
REUT381666 ncbi Ralstonia eutropha H167
REUT264198 ncbi Ralstonia eutropha JMP1347
RDEN375451 ncbi Roseobacter denitrificans OCh 1147
RCAS383372 ncbi Roseiflexus castenholzii DSM 139416
PTHE370438 ncbi Pelotomaculum thermopropionicum SI6
PSYR223283 ncbi Pseudomonas syringae pv. tomato str. DC30006
PSYR205918 ncbi Pseudomonas syringae pv. syringae B728a7
PSP56811 Psychrobacter sp.6
PSP312153 ncbi Polynucleobacter necessarius asymbioticus QLW-P1DMWA-16
PSP296591 ncbi Polaromonas sp. JS6667
PPUT76869 ncbi Pseudomonas putida GB-17
PPUT351746 ncbi Pseudomonas putida F17
PPUT160488 ncbi Pseudomonas putida KT24406
PNAP365044 ncbi Polaromonas naphthalenivorans CJ27
PLUM243265 ncbi Photorhabdus luminescens laumondii TTO17
PING357804 ncbi Psychromonas ingrahamii 376
PFLU216595 ncbi Pseudomonas fluorescens SBW257
PCRY335284 ncbi Psychrobacter cryohalolentis K56
PCAR338963 ncbi Pelobacter carbinolicus DSM 23806
PATL342610 ncbi Pseudoalteromonas atlantica T6c6
PARC259536 ncbi Psychrobacter arcticus 273-46
OIHE221109 ncbi Oceanobacillus iheyensis HTE8317
OCAR504832 ncbi Oligotropha carboxidovorans OM57
NWIN323098 ncbi Nitrobacter winogradskyi Nb-2557
NMUL323848 ncbi Nitrosospira multiformis ATCC 251966
NHAM323097 ncbi Nitrobacter hamburgensis X147
NEUR228410 ncbi Nitrosomonas europaea ATCC 197186
NARO279238 ncbi Novosphingobium aromaticivorans DSM 124446
MTHE264732 ncbi Moorella thermoacetica ATCC 390736
MSP409 Methylobacterium sp.7
MSP266779 ncbi Chelativorans sp. BNC16
MPET420662 ncbi Methylibium petroleiphilum PM17
MMAG342108 ncbi Magnetospirillum magneticum AMB-16
MLOT266835 ncbi Mesorhizobium loti MAFF3030997
MEXT419610 ncbi Methylobacterium extorquens PA17
LCHO395495 ncbi Leptothrix cholodnii SP-67
KPNE272620 ncbi Klebsiella pneumoniae pneumoniae MGH 785787
JSP375286 ncbi Janthinobacterium sp. Marseille6
HMOD498761 ncbi Heliobacterium modesticaldum Ice17
HCHE349521 ncbi Hahella chejuensis KCTC 23966
HARS204773 ncbi Herminiimonas arsenicoxydans6
GURA351605 ncbi Geobacter uraniireducens Rf47
GTHE420246 ncbi Geobacillus thermodenitrificans NG80-26
GSUL243231 ncbi Geobacter sulfurreducens PCA6
GOXY290633 ncbi Gluconobacter oxydans 621H6
GMET269799 ncbi Geobacter metallireducens GS-157
GKAU235909 ncbi Geobacillus kaustophilus HTA4266
GBET391165 ncbi Granulibacter bethesdensis CGDNIH16
ESP42895 Enterobacter sp.7
ELIT314225 ncbi Erythrobacter litoralis HTCC25946
EFER585054 ncbi Escherichia fergusonii ATCC 354697
ECOO157 ncbi Escherichia coli O157:H7 EDL9337
ECOL83334 Escherichia coli O157:H77
ECOL585397 ncbi Escherichia coli ED1a7
ECOL585057 ncbi Escherichia coli IAI397
ECOL585056 ncbi Escherichia coli UMN0267
ECOL585055 ncbi Escherichia coli 559897
ECOL585035 ncbi Escherichia coli S887
ECOL585034 ncbi Escherichia coli IAI17
ECOL481805 ncbi Escherichia coli ATCC 87397
ECOL469008 ncbi Escherichia coli BL21(DE3)7
ECOL439855 ncbi Escherichia coli SMS-3-57
ECOL413997 ncbi Escherichia coli B str. REL6067
ECOL409438 ncbi Escherichia coli SE117
ECOL405955 ncbi Escherichia coli APEC O17
ECOL364106 ncbi Escherichia coli UTI897
ECOL362663 ncbi Escherichia coli 5367
ECOL331111 ncbi Escherichia coli E24377A7
ECOL316407 ncbi Escherichia coli K-12 substr. W31107
ECOL199310 ncbi Escherichia coli CFT0737
ECAR218491 ncbi Pectobacterium atrosepticum SCRI10437
DSHI398580 ncbi Dinoroseobacter shibae DFL 126
DRED349161 ncbi Desulfotomaculum reducens MI-17
DOLE96561 ncbi Desulfococcus oleovorans Hxd36
DHAF138119 ncbi Desulfitobacterium hafniense Y517
DETH243164 ncbi Dehalococcoides ethenogenes 1956
DDES207559 ncbi Desulfovibrio desulfuricans desulfuricans G206
DARO159087 ncbi Dechloromonas aromatica RCB6
CVIO243365 ncbi Chromobacterium violaceum ATCC 124726
CTET212717 ncbi Clostridium tetani E886
CSP501479 Citreicella sp. SE457
CSAL290398 ncbi Chromohalobacter salexigens DSM 30436
CPER289380 ncbi Clostridium perfringens SM1017
CPER195103 ncbi Clostridium perfringens ATCC 131247
CPER195102 ncbi Clostridium perfringens 137
CKLU431943 ncbi Clostridium kluyveri DSM 5556
CHYD246194 ncbi Carboxydothermus hydrogenoformans Z-29016
CDES477974 ncbi Candidatus Desulforudis audaxviator MP104C7
CBOT515621 ncbi Clostridium botulinum Ba4 str. 6576
BWEI315730 ncbi Bacillus weihenstephanensis KBAB46
BVIE269482 ncbi Burkholderia vietnamiensis G46
BTHU412694 ncbi Bacillus thuringiensis Al Hakam6
BTHU281309 ncbi Bacillus thuringiensis serovar konkukian str. 97-276
BTHA271848 ncbi Burkholderia thailandensis E2646
BSP376 Bradyrhizobium sp.7
BSP36773 Burkholderia sp.7
BPSE320373 ncbi Burkholderia pseudomallei 6686
BPSE320372 ncbi Burkholderia pseudomallei 1710b6
BPSE272560 ncbi Burkholderia pseudomallei K962436
BPET94624 Bordetella petrii6
BPER257313 ncbi Bordetella pertussis Tohama I6
BPAR257311 ncbi Bordetella parapertussis 128226
BMAL320389 ncbi Burkholderia mallei NCTC 102476
BMAL320388 ncbi Burkholderia mallei SAVP16
BMAL243160 ncbi Burkholderia mallei ATCC 233446
BJAP224911 ncbi Bradyrhizobium japonicum USDA 1107
BHAL272558 ncbi Bacillus halodurans C-1256
BCER572264 ncbi Bacillus cereus 03BB1026
BCER405917 Bacillus cereus W6
BCEN331272 ncbi Burkholderia cenocepacia HI24247
BCEN331271 ncbi Burkholderia cenocepacia AU 10547
BBRO257310 ncbi Bordetella bronchiseptica RB506
BAMB398577 ncbi Burkholderia ambifaria MC40-66
BAMB339670 ncbi Burkholderia ambifaria AMMD6
ASP62928 ncbi Azoarcus sp. BH727
ASP232721 ncbi Acidovorax sp. JS427
ASP1667 Arthrobacter sp.6
AORE350688 ncbi Alkaliphilus oremlandii OhILAs6
AFER243159 ncbi Acidithiobacillus ferrooxidans ATCC 232706
ADEH290397 ncbi Anaeromyxobacter dehalogenans 2CP-C6
ACRY349163 ncbi Acidiphilium cryptum JF-57
ACAU438753 ncbi Azorhizobium caulinodans ORS 5717
ABAU360910 ncbi Bordetella avium 197N6
ABAC204669 ncbi Candidatus Koribacter versatilis Ellin3456
AAVE397945 ncbi Acidovorax citrulli AAC00-17


Names of the homologs of the genes in the group in each of these orgs
  EG11218   EG10784   EG10783   EG10782   EG10735   EG10733   EG10728   
ZMOB264203 ZMO1322ZMO1048ZMO1050ZMO1049ZMO1163ZMO1162ZMO1164
YPSE349747 YPSIP31758_0875YPSIP31758_4170YPSIP31758_4168YPSIP31758_4169YPSIP31758_4167YPSIP31758_3135YPSIP31758_3136
YPSE273123 YPTB3171YPTB3962YPTB3960YPTB3961YPTB3959YPTB0918YPTB0917
YPES386656 YPDSF_0620YPDSF_3919YPDSF_3921YPDSF_3920YPDSF_3922YPDSF_2837YPDSF_2838
YPES377628 YPN_3095YPN_3973YPN_3971YPN_3972YPN_3970YPN_0885YPN_0884
YPES360102 YPA_0373YPA_4161YPA_4159YPA_4160YPA_4158YPA_2697YPA_2698
YPES349746 YPANGOLA_A3843YPANGOLA_A4196YPANGOLA_A4194YPANGOLA_A4195YPANGOLA_A4193YPANGOLA_A3285YPANGOLA_A3286
YPES214092 YPO0896YPO4116YPO4114YPO4115YPO4113YPO3204YPO3205
YPES187410 Y3280Y4130Y4128Y4129Y4127Y0979Y0978
YENT393305 YE3384YE4200YE4198YE4199YE4196YE3181YE3182
XORY360094 XOOORF_2135XOOORF_2132XOOORF_2134XOOORF_2131XOOORF_4341XOOORF_4340
XORY342109 XOO2335XOO2337XOO2336XOO2338XOO3464XOO3463
XORY291331 XOO2463XOO2465XOO2464XOO2466XOO3667XOO3666
XFAS183190 PD_1203PD_1205PD_1204PD_1206PD_1969PD_1970
XFAS160492 XF2142XF2144XF2143XF2145XF2592XF2593
XCAM487884 XCC-B100_1466XCC-B100_2735XCC-B100_2737XCC-B100_2736XCC-B100_2738XCC-B100_3389XCC-B100_3388
XCAM316273 XCAORF_3052XCAORF_1799XCAORF_1797XCAORF_1798XCAORF_1796XCAORF_1158XCAORF_1160
XCAM314565 XC_1419XC_2709XC_2711XC_2710XC_2712XC_3273XC_3272
XCAM190485 XCC2695XCC1526XCC1524XCC1525XCC1523XCC0962XCC0963
XAXO190486 XAC2855XAC1576XAC1574XAC1575XAC1573XAC1041XAC1042
XAUT78245 XAUT_0202XAUT_0198XAUT_0200XAUT_0199XAUT_0201XAUT_0196XAUT_0202
VEIS391735 VEIS_1292VEIS_1290VEIS_1291VEIS_1289VEIS_1287VEIS_1288
TTEN273068 TTE1633TTE1630TTE1628TTE1629TTE1627TTE1632TTE2689
TSP1755 TETH514_1997TETH514_1994TETH514_1992TETH514_1993TETH514_1991TETH514_1996TETH514_0588
TPSE340099 TETH39_0825TETH39_0828TETH39_0830TETH39_0829TETH39_0831TETH39_0826TETH39_0825
TDEN292415 TBD_1137TBD_1139TBD_1138TBD_0025TBD_0217TBD_0216
STYP99287 STM4588STM3856STM3854STM3855STM3853STM0398STM0397
STHE292459 STH750STH236STH746STH747STH745STH749STH3308
SSP644076 SCH4B_2343SCH4B_2339SCH4B_2341SCH4B_2342SCH4B_2337SCH4B_2343
SSP292414 TM1040_1257TM1040_1261TM1040_1259TM1040_1258TM1040_1263TM1040_1257
SSON300269 SSO_4548SSO_3907SSO_3909SSO_3908SSO_3910SSO_0377SSO_0376
SPRO399741 SPRO_3896SPRO_0013SPRO_0015SPRO_0014SPRO_0016SPRO_1042SPRO_1041
SMEL266834 SMC02140SMC02144SMC02142SMC02141SMC02147SMC02140
SHIGELLA CREBPSTCPSTBPSTAPHOUPHORPHOB
SHAE279808 SH1232SH1523SH1525SH1524SH1526SH1233
SFLE373384 SFV_4432SFV_3780SFV_3782SFV_3781SFV_3783SFV_0365SFV_0364
SFLE198214 AAN45843.1AAN45174.1AAN45176.1AAN45175.1AAN45177.1AAN41995.1AAN41994.1
SEPI176280 SE_1369SE_1069SE_1067SE_1068SE_1066SE_1368SE_1176
SEPI176279 SERP1256SERP0959SERP0957SERP0958SERP0956SERP1255SERP1055
SENT454169 SEHA_C4998SEHA_C4187SEHA_C4185SEHA_C4186SEHA_C4184SEHA_C0497SEHA_C0496
SENT321314 SCH_4433SCH_3770SCH_3768SCH_3769SCH_3767SCH_0439SCH_0438
SENT295319 SPA4398SPA3697SPA3695SPA3696SPA3694SPA2325SPA2326
SENT220341 STY4935STY3927STY3929STY3928STY3930STY0433STY0432
SENT209261 T4627T3667T3669T3668T3670T2466T2467
SDYS300267 SDY_4659SDY_4023SDY_4025SDY_4024SDY_4026SDY_0338
SDEG203122 SDE_2724SDE_3754SDE_3752SDE_3751SDE_3839SDE_3838
SCO SCO5283SCO4141SCO4139SCO4140SCO4229SCO3741
SBOY300268 SBO_4461SBO_3655SBO_3657SBO_3656SBO_3658SBO_0294SBO_0293
SAUR93062 SACOL1740SACOL1423SACOL1421SACOL1422SACOL1420SACOL1739SACOL1535
SAUR93061 SAOUHSC_01800SAOUHSC_01387SAOUHSC_01385SAOUHSC_01386SAOUHSC_01384SAOUHSC_01799SAOUHSC_01586
SAUR426430 NWMN_1586NWMN_1299NWMN_1297NWMN_1298NWMN_1296NWMN_1585NWMN_1400
SAUR418127 SAHV_1679SAHV_1376SAHV_1374SAHV_1375SAHV_1373SAHV_1678SAHV_1480
SAUR367830 SAUSA300_1639SAUSA300_1282SAUSA300_1280SAUSA300_1281SAUSA300_1279SAUSA300_1442
SAUR359787 SAURJH1_1784SAURJH1_1478SAURJH1_1476SAURJH1_1477SAURJH1_1475SAURJH1_1783SAURJH1_1580
SAUR359786 SAURJH9_1750SAURJH9_1449SAURJH9_1447SAURJH9_1448SAURJH9_1446SAURJH9_1749SAURJH9_1549
SAUR282459 SAS1621SAS1329SAS1327SAS1328SAS1326SAS1620SAS1432
SAUR282458 SAR1772SAR1401SAR1399SAR1400SAR1398SAR1771SAR1568
SAUR273036 SAB1552CSAB1244CSAB1242CSAB1243CSAB1241CSAB1551C
SAUR196620 MW1637MW1276MW1274MW1275MW1273MW1636MW1446
SAUR158879 SA1516SA1220SA1218SA1219SA1217SA1515SA1323
SAUR158878 SAV1693SAV1388SAV1386SAV1387SAV1385SAV1692SAV1492
SALA317655 SALA_2047SALA_0825SALA_0823SALA_0822SALA_1123SALA_0821
SAGA211110 GBS1952GBS1950GBS1951GBS1022GBS0742GBS1948
SAGA208435 SAG_1965SAG_1963SAG_1964SAG_0987SAG_0720SAG_1961
SAGA205921 SAK_1926SAK_1924SAK_1925SAK_1082SAK_0846SAK_1922
SACI56780 SYN_00981SYN_00057SYN_00059SYN_00058SYN_00060SYN_00061SYN_00981
RXYL266117 RXYL_2983RXYL_0819RXYL_0821RXYL_0820RXYL_2982RXYL_0378
RSPH349102 RSPH17025_1924RSPH17025_1920RSPH17025_1922RSPH17025_1923RSPH17025_1106RSPH17025_1924
RSPH349101 RSPH17029_0314RSPH17029_1261RSPH17029_1259RSPH17029_1258RSPH17029_1559RSPH17029_1257
RSPH272943 RSP_1681RSP_2603RSP_2601RSP_2600RSP_2915RSP_2599
RSP357808 ROSERS_0114ROSERS_4151ROSERS_4148ROSERS_4150ROSERS_0992ROSERS_3817ROSERS_0805
RSOL267608 RSP1161RSC1530RSC1532RSC1531RSC1533RSC1535RSC1534
RRUB269796 RRU_A3422RRU_A0599RRU_A0601RRU_A0602RRU_A3543RRU_A0603
RPOM246200 SPO_0710SPO_1949SPO_1951SPO_1952SPO_1947SPO_1953
RPAL316058 RPB_0781RPB_0777RPB_0779RPB_0778RPB_0780RPB_0775RPB_0781
RPAL316057 RPD_0893RPD_0889RPD_0891RPD_0890RPD_0892RPD_0887RPD_0893
RPAL316056 RPC_4918RPC_4922RPC_4920RPC_4921RPC_4919RPC_4924RPC_4918
RPAL316055 RPE_4886RPE_4890RPE_4888RPE_4889RPE_4887RPE_4892RPE_4886
RPAL258594 RPA4775RPA4779RPA4777RPA4778RPA4776RPA4781RPA4775
RMET266264 RMET_1652RMET_2184RMET_2182RMET_2183RMET_2181RMET_2179RMET_2180
RLEG216596 RL0547RL1683RL1685RL1684RL0546RL0540RL0547
RFER338969 RFER_0510RFER_0582RFER_0580RFER_0581RFER_0579RFER_0577RFER_0578
REUT381666 H16_A0295H16_A2443H16_A2441H16_A2442H16_A2440H16_A2438H16_A2439
REUT264198 REUT_A0185REUT_A2166REUT_A2164REUT_A2165REUT_A2163REUT_A2161REUT_A2162
RDEN375451 RD1_1377RD1_2643RD1_2646RD1_2644RD1_2647RD1_2641RD1_2648
RCAS383372 RCAS_0353RCAS_0588RCAS_0586RCAS_0587RCAS_0585RCAS_1176
PTHE370438 PTH_1831PTH_1673PTH_1677PTH_1676PTH_2684PTH_2685
PSYR223283 PSPTO_3268PSPTO_3266PSPTO_3267PSPTO_5483PSPTO_5478PSPTO_5477
PSYR205918 PSYR_2868PSYR_3105PSYR_3103PSYR_3104PSYR_5037PSYR_5033PSYR_5032
PSP56811 PSYCPRWF_2269PSYCPRWF_2267PSYCPRWF_2268PSYCPRWF_2266PSYCPRWF_2092PSYCPRWF_2093
PSP312153 PNUC_1601PNUC_1599PNUC_1600PNUC_1598PNUC_1596PNUC_1597
PSP296591 BPRO_0237BPRO_2253BPRO_2255BPRO_2254BPRO_2256BPRO_2258BPRO_2257
PPUT76869 PPUTGB1_0360PPUTGB1_3146PPUTGB1_5373PPUTGB1_3145PPUTGB1_5372PPUTGB1_5368PPUTGB1_5367
PPUT351746 PPUT_0357PPUT_2165PPUT_5234PPUT_2166PPUT_5233PPUT_5229PPUT_5228
PPUT160488 PP_2657PP_5326PP_2658PP_5325PP_5321PP_5320
PNAP365044 PNAP_0030PNAP_2205PNAP_2203PNAP_2204PNAP_2202PNAP_2200PNAP_2201
PLUM243265 PLU2778PLU0215PLU0217PLU0216PLU0218PLU3910PLU3911
PING357804 PING_0988PING_2406PING_2590PING_2405PING_2231PING_2232
PFLU216595 PFLU5641PFLU3317PFLU6045PFLU3316PFLU6044PFLU6040PFLU6039
PCRY335284 PCRYO_2220PCRYO_2222PCRYO_2221PCRYO_2223PCRYO_2215PCRYO_2216
PCAR338963 PCAR_0360PCAR_0656PCAR_0658PCAR_0659PCAR_0654PCAR_0653
PATL342610 PATL_1527PATL_3317PATL_3315PATL_3314PATL_1054PATL_1053
PARC259536 PSYC_1927PSYC_1929PSYC_1928PSYC_1930PSYC_1922PSYC_1923
OIHE221109 OB2165OB3135OB3133OB3134OB1929OB2164OB1819
OCAR504832 OCAR_4651OCAR_4647OCAR_4649OCAR_4648OCAR_4650OCAR_4645OCAR_4651
NWIN323098 NWI_0511NWI_0507NWI_0509NWI_0508NWI_0510NWI_0505NWI_0511
NMUL323848 NMUL_A1086NMUL_A1088NMUL_A1087NMUL_A0435NMUL_A2232NMUL_A2231
NHAM323097 NHAM_0640NHAM_0636NHAM_0638NHAM_0637NHAM_0639NHAM_0634NHAM_0640
NEUR228410 NE0514NE1001NE1000NE1744NE1288NE2131
NARO279238 SARO_2281SARO_2279SARO_2278SARO_2280SARO_2275SARO_2281
MTHE264732 MOTH_0070MOTH_0112MOTH_0114MOTH_0115MOTH_2494MOTH_0070
MSP409 M446_6685M446_6689M446_6687M446_6688M446_6686M446_1659M446_6685
MSP266779 MESO_3116MESO_3120MESO_3118MESO_0011MESO_0012MESO_3116
MPET420662 MPE_A0135MPE_A1273MPE_A1275MPE_A1274MPE_A1276MPE_A1278MPE_A1277
MMAG342108 AMB1844AMB1374AMB1107AMB4473AMB0290AMB1370
MLOT266835 MLL3716MLL3722MLL3719MLL3720MLR5643MLR5642MLL3716
MEXT419610 MEXT_4718MEXT_4714MEXT_4716MEXT_4715MEXT_4717MEXT_2689MEXT_4718
LCHO395495 LCHO_2476LCHO_2813LCHO_2811LCHO_2812LCHO_2810LCHO_2809LCHO_1659
KPNE272620 GKPORF_B4261GKPORF_B3473GKPORF_B3471GKPORF_B3472GKPORF_B3470GKPORF_B4667GKPORF_B4666
JSP375286 MMA_2290MMA_2288MMA_2289MMA_2287MMA_2285MMA_2286
HMOD498761 HM1_2078HM1_2083HM1_2085HM1_2084HM1_2086HM1_2079HM1_2078
HCHE349521 HCH_00064HCH_00751HCH_00753HCH_00754HCH_00770HCH_00771
HARS204773 HEAR1108HEAR1110HEAR1109HEAR1111HEAR1113HEAR1112
GURA351605 GURA_3292GURA_2559GURA_2561GURA_2560GURA_2562GURA_1571GURA_2556
GTHE420246 GTNG_2656GTNG_2396GTNG_2394GTNG_2393GTNG_2206GTNG_2656
GSUL243231 GSU_3118GSU_1096GSU_1097GSU_1095GSU_1101GSU_1102
GOXY290633 GOX0819GOX0706GOX0704GOX0705GOX0703GOX0702
GMET269799 GMET_2693GMET_2702GMET_2704GMET_2703GMET_2705GMET_2694GMET_2693
GKAU235909 GK2732GK3437GK2454GK3438GK2731GK2732
GBET391165 GBCGDNIH1_1971GBCGDNIH1_0911GBCGDNIH1_0913GBCGDNIH1_0912GBCGDNIH1_0914GBCGDNIH1_0915
ESP42895 ENT638_0559ENT638_4138ENT638_4140ENT638_4139ENT638_4141ENT638_0868ENT638_0867
ELIT314225 ELI_05400ELI_05420ELI_05410ELI_05405ELI_05425ELI_05400
EFER585054 EFER_4497EFER_4025EFER_4023EFER_4024EFER_4022EFER_2626EFER_2627
ECOO157 CREBPSTCPSTBPSTAPHOUPHORPHOB
ECOL83334 ECS5356ECS4663ECS4661ECS4662ECS4660ECS0450ECS0449
ECOL585397 ECED1_5271ECED1_4417ECED1_4415ECED1_4416ECED1_4414ECED1_0422ECED1_0421
ECOL585057 ECIAI39_4931ECIAI39_4327ECIAI39_4325ECIAI39_4326ECIAI39_4324ECIAI39_0282ECIAI39_0283
ECOL585056 ECUMN_5029ECUMN_4253ECUMN_4251ECUMN_4252ECUMN_4250ECUMN_0437ECUMN_0436
ECOL585055 EC55989_5060EC55989_4198EC55989_4196EC55989_4197EC55989_4195EC55989_0408EC55989_0407
ECOL585035 ECS88_5081ECS88_4149ECS88_4147ECS88_4148ECS88_4146ECS88_0394ECS88_0393
ECOL585034 ECIAI1_4623ECIAI1_3907ECIAI1_3905ECIAI1_3906ECIAI1_3904ECIAI1_0399ECIAI1_0398
ECOL481805 ECOLC_3658ECOLC_4267ECOLC_4269ECOLC_4268ECOLC_4270ECOLC_3233ECOLC_3234
ECOL469008 ECBD_3622ECBD_4305ECBD_4307ECBD_4306ECBD_4308ECBD_3261ECBD_3262
ECOL439855 ECSMS35_4949ECSMS35_4091ECSMS35_4089ECSMS35_4090ECSMS35_4088ECSMS35_0430ECSMS35_0429
ECOL413997 ECB_04274ECB_03611ECB_03609ECB_03610ECB_03608ECB_00348ECB_00347
ECOL409438 ECSE_4674ECSE_4013ECSE_4011ECSE_4012ECSE_4010ECSE_0420ECSE_0419
ECOL405955 APECO1_1981APECO1_2734APECO1_2736APECO1_2735APECO1_2737APECO1_1610APECO1_1611
ECOL364106 UTI89_C5171UTI89_C4279UTI89_C4277UTI89_C4278UTI89_C4276UTI89_C0421UTI89_C0420
ECOL362663 ECP_4784ECP_3926ECP_3924ECP_3925ECP_3923ECP_0459ECP_0458
ECOL331111 ECE24377A_4997ECE24377A_4238ECE24377A_4236ECE24377A_4237ECE24377A_4235ECE24377A_0428ECE24377A_0427
ECOL316407 ECK4390:JW4361:B4398ECK3720:JW3705:B3727ECK3718:JW3703:B3725ECK3719:JW3704:B3726ECK3717:JW3702:B3724ECK0394:JW0390:B0400ECK0393:JW0389:B0399
ECOL199310 C5485C4652C4649C4651C4648C0509C0508
ECAR218491 ECA3189ECA4476ECA4474ECA4475ECA4473ECA1111ECA1110
DSHI398580 DSHI_1538DSHI_1534DSHI_1536DSHI_1537DSHI_1532DSHI_1538
DRED349161 DRED_0707DRED_2105DRED_0709DRED_2104DRED_0710DRED_0708DRED_0707
DOLE96561 DOLE_1926DOLE_1928DOLE_1927DOLE_1929DOLE_1931DOLE_1930
DHAF138119 DSY4121DSY4117DSY4115DSY4116DSY4120DSY2575DSY2891
DETH243164 DET_1058DET_0139DET_0141DET_0140DET_0142DET_0135
DDES207559 DDE_2387DDE_1061DDE_2386DDE_2385DDE_3782DDE_2387
DARO159087 DARO_3176DARO_3565DARO_3564DARO_3566DARO_3568DARO_3567
CVIO243365 CV_0937CV_0935CV_0936CV_1261CV_0563CV_0562
CTET212717 CTC_01130CTC_01133CTC_01135CTC_01134CTC_01131CTC_01130
CSP501479 CSE45_4171CSE45_1810CSE45_1812CSE45_1811CSE45_1813CSE45_1808CSE45_1814
CSAL290398 CSAL_0968CSAL_1477CSAL_1479CSAL_3264CSAL_3254CSAL_3253
CPER289380 CPR_0609CPR_0605CPR_0607CPR_0606CPR_0608CPR_1728CPR_2497
CPER195103 CPF_0623CPF_0619CPF_0621CPF_0620CPF_0622CPF_2010CPF_2811
CPER195102 CPE0642CPE0638CPE0640CPE0639CPE0641CPE1757CPE2488
CKLU431943 CKL_1349CKL_1351CKL_1350CKL_1352CKL_1347CKL_0148
CHYD246194 CHY_2047CHY_0784CHY_2116CHY_2045CHY_2046CHY_2047
CDES477974 DAUD_1897DAUD_1959DAUD_1416DAUD_1958DAUD_1415DAUD_1418DAUD_1419
CBOT515621 CLJ_B2755CLJ_B2753CLJ_B2754CLJ_B2752CLJ_B2757CLJ_B2758
BWEI315730 BCERKBAB4_4124BCERKBAB4_4122BCERKBAB4_4123BCERKBAB4_4121BCERKBAB4_4418BCERKBAB4_5259
BVIE269482 BCEP1808_1254BCEP1808_1256BCEP1808_1255BCEP1808_1257BCEP1808_1259BCEP1808_1258
BTHU412694 BALH_3864BALH_3862BALH_3863BALH_3861BALH_4172BALH_4973
BTHU281309 BT9727_4011BT9727_4009BT9727_4010BT9727_4008BT9727_4318BT9727_5147
BTHA271848 BTH_I2772BTH_I2770BTH_I2771BTH_I2769BTH_I2767BTH_I2768
BSP376 BRADO1679BRADO1675BRADO1677BRADO1676BRADO1678BRADO6782BRADO1679
BSP36773 BCEP18194_B0912BCEP18194_A4444BCEP18194_A4446BCEP18194_A4445BCEP18194_A4447BCEP18194_A4449BCEP18194_A4448
BPSE320373 BURPS668_1486BURPS668_1488BURPS668_1487BURPS668_1489BURPS668_1491BURPS668_1490
BPSE320372 BURPS1710B_A1714BURPS1710B_A1716BURPS1710B_A1715BURPS1710B_A1717BURPS1710B_A1720BURPS1710B_A1718
BPSE272560 BPSL1360BPSL1362BPSL1361BPSL1363BPSL1365BPSL1364
BPET94624 BPET3524BPET3522BPET3523BPET1958BPET0480BPET0481
BPER257313 BP1070BP1068BP1069BP2338BP0159BP0160
BPAR257311 BPP2074BPP2076BPP2075BPP1701BPP3997BPP3996
BMAL320389 BMA10247_0575BMA10247_0577BMA10247_0576BMA10247_0578BMA10247_0580BMA10247_0579
BMAL320388 BMASAVP1_A1292BMASAVP1_A1294BMASAVP1_A1293BMASAVP1_A1295BMASAVP1_A1297BMASAVP1_A1296
BMAL243160 BMA_0781BMA_0783BMA_0782BMA_0784BMA_0786BMA_0785
BJAP224911 BLR1096BLR1092BLR1094BLR1093BLR1095BLR1090BLR1096
BHAL272558 BH1580BH2993BH2991BH2992BH2990BH3156
BCER572264 BCA_4382BCA_4380BCA_4381BCA_4379BCA_4698BCA_5617
BCER405917 BCE_4351BCE_4349BCE_4350BCE_4348BCE_4719BCE_5615
BCEN331272 BCEN2424_4798BCEN2424_1301BCEN2424_1303BCEN2424_1302BCEN2424_1304BCEN2424_1306BCEN2424_1305
BCEN331271 BCEN_3569BCEN_0820BCEN_0822BCEN_0821BCEN_0823BCEN_0825BCEN_0824
BBRO257310 BB1467BB1469BB1468BB3407BB4470BB4469
BAMB398577 BAMMC406_1190BAMMC406_1192BAMMC406_1191BAMMC406_1193BAMMC406_1195BAMMC406_1194
BAMB339670 BAMB_1178BAMB_1180BAMB_1179BAMB_1181BAMB_1183BAMB_1182
ASP62928 AZO0704AZO1391AZO1393AZO1392AZO2827AZO0165AZO0164
ASP232721 AJS_0194AJS_2371AJS_2369AJS_2370AJS_2368AJS_2366AJS_2367
ASP1667 ARTH_1441ARTH_0203ARTH_0205ARTH_0204ARTH_0723ARTH_1441
AORE350688 CLOS_0267CLOS_1119CLOS_1118CLOS_0270CLOS_1393CLOS_2784
AFER243159 AFE_1647AFE_1645AFE_1646AFE_1644AFE_1649AFE_1650
ADEH290397 ADEH_4009ADEH_4005ADEH_4003ADEH_4002ADEH_4008ADEH_4009
ACRY349163 ACRY_1884ACRY_1916ACRY_2949ACRY_1917ACRY_2950ACRY_1535ACRY_2951
ACAU438753 AZC_4032AZC_4036AZC_4034AZC_4035AZC_4033AZC_4038AZC_4032
ABAU360910 BAV0940BAV0942BAV0941BAV2245BAV3091BAV3090
ABAC204669 ACID345_2990ACID345_2974ACID345_2972ACID345_2973ACID345_2971ACID345_2989
AAVE397945 AAVE_0318AAVE_2627AAVE_2629AAVE_2628AAVE_2630AAVE_2632AAVE_2631


Organism features enriched in list (features available for 193 out of the 207 orgs in the list)
Feature    Pvalue       Num occurrences in list  Total num occurrences  
Arrangment:Clusters 2.763e-61517
Arrangment:Pairs 0.000040155112
Arrangment:Singles 0.000312476286
Disease:Bubonic_plague 0.001248766
Disease:Dysentery 0.001248766
Disease:Toxic-shock_syndrome_and_staphylococcal_scarlet_fever 4.305e-61111
Endospores:No 0.000020148211
GC_Content_Range4:0-40 2.327e-1332213
GC_Content_Range4:60-100 4.125e-1079145
GC_Content_Range7:0-30 0.0001828547
GC_Content_Range7:30-40 9.413e-927166
GC_Content_Range7:40-50 0.000372824117
GC_Content_Range7:50-60 3.278e-758107
GC_Content_Range7:60-70 7.010e-1176134
Genome_Size_Range5:0-2 2.154e-311155
Genome_Size_Range5:4-6 1.224e-18108184
Genome_Size_Range5:6-10 0.00786062347
Genome_Size_Range9:1-2 8.630e-251128
Genome_Size_Range9:4-5 4.408e-95796
Genome_Size_Range9:5-6 1.188e-75188
Genome_Size_Range9:6-8 0.00501822038
Gram_Stain:Gram_Neg 2.823e-7138333
Habitat:Multiple 0.000012881178
Motility:No 0.004258238151
Motility:Yes 2.017e-7117267
Optimal_temp.:25-30 4.252e-61619
Optimal_temp.:30-37 0.00009211418
Oxygen_Req:Facultative 1.361e-692201
Pathogenic_in:Plant 0.00586351015
Shape:Irregular_coccus 0.0083853117
Shape:Rod 1.649e-12153347
Shape:Sphere 0.0040883119
Shape:Spiral 0.0001141234
Temp._range:Hyperthermophilic 0.0053314223
Temp._range:Mesophilic 0.0093316166473



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ORGANISMS CONTAINING AT MOST 1 GENES FROM THE GROUP:

Total number of orgs: 126
Effective number of orgs (counting one per cluster within 468 clusters): 95

Organism list
Homologs in each organism in the list
Features enriched in organism list


Follow (ncbi) link, when present, to find the set of organism features for each organism
Org ID  Org Name  # genes in group found in org  
WSUC273121 ncbi Wolinella succinogenes DSM 17400
WPIP955 Wolbachia pipientis0
WPIP80849 Wolbachia endosymbiont of Brugia malayi1
UURE95667 Ureaplasma urealyticum serovar 130
UURE95664 Ureaplasma urealyticum serovar 100
UPAR505682 ncbi Ureaplasma parvum serovar 3 str. ATCC 278150
TVOL273116 ncbi Thermoplasma volcanium GSS10
TPAL243276 ncbi Treponema pallidum pallidum Nichols0
TDEN243275 ncbi Treponema denticola ATCC 354050
TACI273075 ncbi Thermoplasma acidophilum DSM 17280
STOK273063 ncbi Sulfolobus tokodaii 70
SSOL273057 ncbi Sulfolobus solfataricus P21
SPYO193567 ncbi Streptococcus pyogenes SSI-11
SACI330779 ncbi Sulfolobus acidocaldarius DSM 6390
RTYP257363 ncbi Rickettsia typhi Wilmington0
RRIC452659 ncbi Rickettsia rickettsii Iowa0
RRIC392021 ncbi Rickettsia rickettsii Sheila Smith0
RPRO272947 ncbi Rickettsia prowazekii Madrid E0
RMAS416276 ncbi Rickettsia massiliae MTU50
RFEL315456 ncbi Rickettsia felis URRWXCal20
RCON272944 ncbi Rickettsia conorii Malish 70
RCAN293613 ncbi Rickettsia canadensis McKiel0
RBEL391896 ncbi Rickettsia bellii OSU 85-3890
RBEL336407 ncbi Rickettsia bellii RML369-C0
RALB246199 Ruminococcus albus 80
RAKA293614 ncbi Rickettsia akari Hartford0
PTOR263820 ncbi Picrophilus torridus DSM 97900
PRUM264731 ncbi Prevotella ruminicola 230
PINT246198 Prevotella intermedia 170
PHOR70601 ncbi Pyrococcus horikoshii OT30
PGIN242619 ncbi Porphyromonas gingivalis W830
PAST100379 Onion yellows phytoplasma0
PARS340102 ncbi Pyrobaculum arsenaticum DSM 135141
PAER178306 ncbi Pyrobaculum aerophilum IM21
OTSU357244 ncbi Orientia tsutsugamushi Boryong0
NSEN222891 ncbi Neorickettsia sennetsu Miyayama0
NMEN374833 ncbi Neisseria meningitidis 0534420
NMEN272831 ncbi Neisseria meningitidis FAM180
NMEN122587 ncbi Neisseria meningitidis Z24910
NMEN122586 ncbi Neisseria meningitidis MC580
NGON242231 ncbi Neisseria gonorrhoeae FA 10900
MSYN262723 ncbi Mycoplasma synoviae 530
MSUC221988 ncbi Mannheimia succiniciproducens MBEL55E0
MSED399549 ncbi Metallosphaera sedula DSM 53480
MPUL272635 ncbi Mycoplasma pulmonis UAB CTIP0
MPNE272634 ncbi Mycoplasma pneumoniae M1290
MPEN272633 ncbi Mycoplasma penetrans HF-21
MMYC272632 ncbi Mycoplasma mycoides mycoides SC str. PG11
MMOB267748 ncbi Mycoplasma mobile 163K0
MKAN190192 ncbi Methanopyrus kandleri AV191
MHYO295358 ncbi Mycoplasma hyopneumoniae 2320
MHYO262722 ncbi Mycoplasma hyopneumoniae 74480
MHYO262719 ncbi Mycoplasma hyopneumoniae J0
MGEN243273 ncbi Mycoplasma genitalium G370
MFLO265311 ncbi Mesoplasma florum L10
MCAP340047 ncbi Mycoplasma capricolum capricolum ATCC 273431
MART243272 ncbi Mycoplasma arthritidis 158L3-10
LPNE400673 ncbi Legionella pneumophila Corby1
LPNE297246 ncbi Legionella pneumophila Paris1
LPNE297245 ncbi Legionella pneumophila Lens1
LPNE272624 ncbi Legionella pneumophila pneumophila Philadelphia 11
LINT363253 ncbi Lawsonia intracellularis PHE/MN1-000
LBOR355277 ncbi Leptospira borgpetersenii serovar Hardjo-bovis JB1971
LBOR355276 ncbi Leptospira borgpetersenii serovar Hardjo-bovis L5501
LBIF456481 ncbi Leptospira biflexa serovar Patoc strain Patoc 1 (Paris)1
LBIF355278 ncbi Leptospira biflexa serovar Patoc strain Patoc 1 (Ames)1
HSOM228400 ncbi Haemophilus somnus 23360
HSOM205914 ncbi Haemophilus somnus 129PT0
HPYL85963 ncbi Helicobacter pylori J990
HPYL357544 ncbi Helicobacter pylori HPAG10
HPY ncbi Helicobacter pylori 266950
HHEP235279 ncbi Helicobacter hepaticus ATCC 514490
HDUC233412 ncbi Haemophilus ducreyi 35000HP0
HBUT415426 ncbi Hyperthermus butylicus DSM 54561
HACI382638 ncbi Helicobacter acinonychis Sheeba0
GFOR411154 ncbi Gramella forsetii KT08031
FTUL458234 ncbi Francisella tularensis holarctica FTNF002-000
FTUL418136 ncbi Francisella tularensis tularensis WY96-34180
FTUL401614 ncbi Francisella novicida U1120
FTUL393115 ncbi Francisella tularensis tularensis FSC1980
FTUL393011 ncbi Francisella tularensis holarctica OSU180
FTUL351581 Francisella tularensis holarctica FSC2000
FRANT ncbi Francisella tularensis tularensis SCHU S40
FPHI484022 ncbi Francisella philomiragia philomiragia ATCC 250170
FNUC190304 ncbi Fusobacterium nucleatum nucleatum ATCC 255860
FJOH376686 ncbi Flavobacterium johnsoniae UW1010
ERUM302409 ncbi Ehrlichia ruminantium Gardel1
ERUM254945 ncbi Ehrlichia ruminantium Welgevonden1
ECHA205920 ncbi Ehrlichia chaffeensis Arkansas1
ECAN269484 ncbi Ehrlichia canis Jake1
CVES412965 ncbi Candidatus Vesicomyosocius okutanii HA0
CTRA471473 ncbi Chlamydia trachomatis L2b/UCH-1/proctitis0
CTRA471472 ncbi Chlamydia trachomatis 434/Bu0
CSUL444179 ncbi Candidatus Sulcia muelleri GWSS0
CRUT413404 ncbi Candidatus Ruthia magnifica Cm (Calyptogena magnifica)0
CPRO264201 ncbi Candidatus Protochlamydia amoebophila UWE250
CPNE182082 ncbi Chlamydophila pneumoniae TW-1830
CPNE138677 ncbi Chlamydophila pneumoniae J1380
CPNE115713 ncbi Chlamydophila pneumoniae CWL0290
CPNE115711 ncbi Chlamydophila pneumoniae AR390
CNOV386415 ncbi Clostridium novyi NT1
CMUR243161 ncbi Chlamydia muridarum Nigg0
CMAQ397948 ncbi Caldivirga maquilingensis IC-1670
CJEJ407148 ncbi Campylobacter jejuni jejuni 811161
CJEJ360109 ncbi Campylobacter jejuni doylei 269.971
CJEJ354242 ncbi Campylobacter jejuni jejuni 81-1761
CJEJ195099 ncbi Campylobacter jejuni RM12211
CJEJ192222 ncbi Campylobacter jejuni jejuni NCTC 111681
CFEL264202 ncbi Chlamydophila felis Fe/C-560
CCUR360105 ncbi Campylobacter curvus 525.920
CCON360104 ncbi Campylobacter concisus 138260
CCAV227941 ncbi Chlamydophila caviae GPIC0
CBLO291272 ncbi Candidatus Blochmannia pennsylvanicus BPEN0
CBLO203907 ncbi Candidatus Blochmannia floridanus0
CABO218497 ncbi Chlamydophila abortus S26/30
BXEN266265 ncbi Burkholderia xenovorans LB4000
BSP107806 ncbi Buchnera aphidicola APS (Acyrthosiphon pisum)0
BGAR290434 ncbi Borrelia garinii PBi1
BCIC186490 Candidatus Baumannia cicadellinicola0
BBUR224326 ncbi Borrelia burgdorferi B311
BAPH372461 ncbi Buchnera aphidicola Cc (Cinara cedri)0
BAPH198804 ncbi Buchnera aphidicola Sg (Schizaphis graminum)0
AYEL322098 ncbi Aster yellows witches-broom phytoplasma AYWB0
AURANTIMONAS Aurantimonas manganoxydans SI85-9A10
APHA212042 ncbi Anaplasma phagocytophilum HZ0
AMAR234826 ncbi Anaplasma marginale St. Maries0


Names of the homologs of the genes in the group in each of these orgs
  EG11218   EG10784   EG10783   EG10782   EG10735   EG10733   EG10728   
WSUC273121
WPIP955
WPIP80849 WB_1058
UURE95667
UURE95664
UPAR505682
TVOL273116
TPAL243276
TDEN243275
TACI273075
STOK273063
SSOL273057 SSO0490
SPYO193567 SPS1076
SACI330779
RTYP257363
RRIC452659
RRIC392021
RPRO272947
RMAS416276
RFEL315456
RCON272944
RCAN293613
RBEL391896
RBEL336407
RALB246199
RAKA293614
PTOR263820
PRUM264731
PINT246198
PHOR70601
PGIN242619
PAST100379
PARS340102 PARS_0443
PAER178306 PAE1396
OTSU357244
NSEN222891
NMEN374833
NMEN272831
NMEN122587
NMEN122586
NGON242231
MSYN262723
MSUC221988
MSED399549
MPUL272635
MPNE272634
MPEN272633 MYPE9350
MMYC272632 MSC_0486
MMOB267748
MKAN190192 MK1688
MHYO295358
MHYO262722
MHYO262719
MGEN243273
MFLO265311
MCAP340047 MCAP_0484
MART243272
LPNE400673 LPC_0854
LPNE297246 LPP1393
LPNE297245 LPL1603
LPNE272624 LPG1438
LINT363253
LBOR355277 LBJ_1965
LBOR355276 LBL_1319
LBIF456481 LEPBI_I0395
LBIF355278 LBF_0383
HSOM228400
HSOM205914
HPYL85963
HPYL357544
HPY
HHEP235279
HDUC233412
HBUT415426 HBUT_0635
HACI382638
GFOR411154 GFO_0119
FTUL458234
FTUL418136
FTUL401614
FTUL393115
FTUL393011
FTUL351581
FRANT
FPHI484022
FNUC190304
FJOH376686
ERUM302409 ERGA_CDS_05430
ERUM254945 ERWE_CDS_05540
ECHA205920 ECH_0492
ECAN269484 ECAJ_0536
CVES412965
CTRA471473
CTRA471472
CSUL444179
CRUT413404
CPRO264201
CPNE182082
CPNE138677
CPNE115713
CPNE115711
CNOV386415 NT01CX_1016
CMUR243161
CMAQ397948
CJEJ407148 C8J_0576
CJEJ360109 JJD26997_1055
CJEJ354242 CJJ81176_0643
CJEJ195099 CJE_0717
CJEJ192222 CJ0614
CFEL264202
CCUR360105
CCON360104
CCAV227941
CBLO291272
CBLO203907
CABO218497
BXEN266265
BSP107806
BGAR290434 BG0221
BCIC186490
BBUR224326 BB_0218
BAPH372461
BAPH198804
AYEL322098
AURANTIMONAS
APHA212042
AMAR234826


Organism features enriched in list (features available for 116 out of the 126 orgs in the list)
Feature    Pvalue       Num occurrences in list  Total num occurrences  
Arrangment:Chains 0.0026224992
Arrangment:Pairs 0.00003178112
Disease:Legionnaire's_disease 0.001502944
Disease:Meningitis_and_septicemia 0.001502944
Disease:None 0.0030645458
Disease:Pharyngitis 2.014e-688
Disease:Rocky_Mountain_Spotted_Fever 0.007714233
Disease:Tularemia 0.000290755
Disease:bronchitis_and_pneumonitis 2.014e-688
Disease:periodontal_disease 0.007714233
Endospores:Yes 0.0000617153
GC_Content_Range4:0-40 9.910e-1984213
GC_Content_Range4:40-60 0.000602430224
GC_Content_Range4:60-100 5.821e-142145
GC_Content_Range7:0-30 2.243e-92747
GC_Content_Range7:30-40 6.431e-857166
GC_Content_Range7:50-60 0.00025509107
GC_Content_Range7:60-70 1.300e-122134
Genome_Size_Range5:0-2 8.127e-2981155
Genome_Size_Range5:6-10 0.0014723247
Genome_Size_Range9:0-1 9.457e-142327
Genome_Size_Range9:1-2 2.129e-1458128
Genome_Size_Range9:6-8 0.0016319138
Gram_Stain:Gram_Neg 1.704e-688333
Gram_Stain:Gram_Pos 1.369e-142150
Habitat:Aquatic 0.0001124691
Habitat:Host-associated 9.845e-1780206
Habitat:Multiple 7.466e-715178
Habitat:Terrestrial 0.0069002131
Motility:Yes 0.000553338267
Optimal_temp.:35-37 0.0051561713
Optimal_temp.:37 0.006740630106
Oxygen_Req:Facultative 9.155e-621201
Oxygen_Req:Microaerophilic 0.00009961118
Pathogenic_in:Animal 0.00577152166
Pathogenic_in:Human 0.000077660213
Pathogenic_in:No 7.720e-723226
Pathogenic_in:Ruminant 0.007714233
Shape:Rod 1.999e-647347
Shape:Sphere 2.497e-81519
Shape:Spiral 3.202e-82134



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ORGANISMS ENRICHED FOR GROUP:

Total number of orgs: 4
Effective number of orgs (counting one per cluster within 468 clusters): 4

Organism list
Homologs in each organism in the list
Features enriched in organism list


Follow (ncbi) link, when present, to find the set of organism features for each organism
Org ID  Org Name    Pvalue       # genes in tgt genome found in org  # genes in group found in org  
CDES477974 ncbi Candidatus Desulforudis audaxviator MP104C 0.00630959617
DETH243164 ncbi Dehalococcoides ethenogenes 195 0.00847225746
ZMOB264203 ncbi Zymomonas mobilis mobilis ZM4 0.009071410127
SEPI176280 ncbi Staphylococcus epidermidis ATCC 12228 0.009990010267


Names of the homologs of the genes in the group in each of these orgs
  EG11218   EG10784   EG10783   EG10782   EG10735   EG10733   EG10728   
CDES477974 DAUD_1897DAUD_1959DAUD_1416DAUD_1958DAUD_1415DAUD_1418DAUD_1419
DETH243164 DET_1058DET_0139DET_0141DET_0140DET_0142DET_0135
ZMOB264203 ZMO1322ZMO1048ZMO1050ZMO1049ZMO1163ZMO1162ZMO1164
SEPI176280 SE_1369SE_1069SE_1067SE_1068SE_1066SE_1368SE_1176


Organism features enriched in list (features available for 4 out of the 4 orgs in the list)
Feature    Pvalue       Num occurrences in list  Total num occurrences  



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ORGANISMS DEPLETED FOR GROUP:




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PHYLOGENETIC PROFILE SIMILARITY WITH KNOWN PATHWAYS:

Pathways or complexes with absolute value of Pearson coefficient with respect to candidate larger than 0.4 are listed below
The candidate is assumed to exist in orgs listed in section List of organisms containing most genes from the group


Pathway or complex  # Orgs containing it  # of those orgs also containing candidate  Pearson Coeff  
3-HYDROXYPHENYLACETATE-DEGRADATION-PWY (4-hydroxyphenylacetate degradation)1491110.4912
COBALSYN-PWY (adenosylcobalamin salvage from cobinamide I)1951300.4792
GLYCOCAT-PWY (glycogen degradation I)2461450.4410
GALACTCAT-PWY (D-galactonate degradation)104820.4336
GLUCARDEG-PWY (D-glucarate degradation I)1521040.4245
CENTFERM-PWY (acetyl-CoA fermentation to butyrate I)2081270.4183
PWY-5918 (heme biosynthesis I)2721490.4028
GDPRHAMSYN-PWY (GDP-D-rhamnose biosynthesis)1561030.4025



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PAIRWISE GENOME CONTEXT SCORE MATRIX:

  EG10784   EG10783   EG10782   EG10735   EG10733   EG10728   
EG112180.9987960.9991320.9985760.9992340.9989570.999357
EG107840.9999550.9999920.9998350.9993750.999446
EG107830.9999720.999980.9995930.999697
EG107820.9998520.9993030.99928
EG107350.9996490.999762
EG107330.999917
EG10728



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PAIRWISE BLAST SCORES:

  EG11218   EG10784   EG10783   EG10782   EG10735   EG10733   EG10728   
EG112180.0f0------
EG10784-0.0f0-----
EG10783--0.0f0----
EG10782---0.0f0---
EG10735----0.0f0--
EG10733-----0.0f0-
EG10728------0.0f0



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PATHWAYS OR PROTEIN COMPLEX MATCHES IN TARGET ORG:

For each case, all genes involved in the pathway or complex are listed. For each gene we list: a tag indicating whether the gene is part of the candidate list or not, the average and the minimum scores of the gene to the candidate list, the gene name, and its product names.

- ABC-27-CPLX (phosphate ABC transporter) (degree of match pw to cand: 0.750, degree of match cand to pw: 0.429, average score: 1.000)
  Genes in pathway or complex:
             0.9994 0.9982 EG10734 (pstS) PSTS-MONOMER (PstS)
   *in cand* 0.9996 0.9988 EG10784 (pstC) PSTC-MONOMER (PstC)
   *in cand* 0.9996 0.9986 EG10782 (pstA) PSTA-MONOMER (PstA)
   *in cand* 0.9998 0.9991 EG10783 (pstB) PSTB-MONOMER (PstB)
  Genes in candidate but not in this pathway or complex:
   *in cand* 0.9996 0.9993 EG10728 (phoB) PHOSPHO-PHOB (PhoB-Phosphorylated transcriptional dual regulator)
   *in cand* 0.9995 0.9990 EG10733 (phoR) PHOSPHO-PHOR (PhoR sensory histidine kinase - phosphorylated)
   *in cand* 0.9998 0.9992 EG10735 (phoU) EG10735-MONOMER (PhoU phosphate transport system protein)
   *in cand* 0.9992 0.9986 EG11218 (creB) PHOSPHO-CREB (CreB-Phosphorylated transcriptional regulator)



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GENOME CONTEXT INFORMATION:

Each row corresponds to a replicon in an organism, each column to a gene in the candidate. The second column indicates whether the organims was included in the list used to compute the genome context scores or not. Some organisms are not included because they are phylogenetically too similar to others already in the list.
The number in the matrix indicate the position of the homolog of the gene in the replicon. All numbers are relative to the smaller one, which is assigned a position of zero. Two columns with the same number indicate that the two genes matched the same gene in that organism.

Genome browser links for gene clusters

The links below opens a genome browser BioCyc page for each cluster of genes in the target genome. These pages shows the central gene of the cluster in the target genome and its best homolog in the reference genomes, for the genomes that contain homologs for at least 75% of the genes in the group. Only one genome per phylogenetic cluster of organisms is shown, to keep the list smaller.

EG10735 EG10782 EG10783 EG10784 (centered at EG10782)
EG10728 EG10733 (centered at EG10733)
EG11218 (centered at EG11218)


ORG:REPLICON:CIRC?\GENE  IN REF LIST  EG11218   EG10784   EG10783   EG10782   EG10735   EG10733   EG10728   
262/623382/623385/623373/623380/623349/623337/623
AAEO224324:0:Tyes012065141207413--
AAUR290340:2:Tyes1351021--1351
AAVE397945:0:Tyes0227422762275227722792278
ABAC204669:0:Tyes19312018-
ABAU360910:0:Tyes-021130721572156
ABOR393595:0:Tyes-2560--255710
ABUT367737:0:Tyes-02----
ACAU438753:0:Tyes0423160
ACEL351607:0:Tyes-0-1--1669
ACRY349163:8:Tyes3563871429388143001431
ADEH290397:0:Tyes731-067
AEHR187272:0:Tyes--29-3010
AFER243159:0:Tyes-312056
AFUL224325:0:Tyes--10---
AHYD196024:0:Tyes2881-1523-152210
ALAI441768:0:Tyes--1-0--
AMAR329726:9:Tyes60833272-03997-1285
AMET293826:0:Tyes-17671765-176401
ANAE240017:0:Tyes232259-258--0
AORE350688:0:Tyes-0847846311232584
APER272557:0:Tyes-0-1---
APLE416269:0:Tyes-423-01
APLE434271:0:Tno-423-01
ASAL382245:5:Tyes2992-266-26710
ASP1667:3:Tyes1255021-5281255
ASP232721:2:Tyes0211321112112211021082109
ASP62928:0:Tyes546126112631262271410
ASP62977:0:Tyes-879881-030403039
ASP76114:2:Tyes-22032205-011441143
AVAR240292:3:Tyes02577534533--1428
BABO262698:1:Tno1726---172501726
BAFZ390236:2:Fyes-02----
BAMB339670:3:Tno-021354
BAMB398577:3:Tno-021354
BAMY326423:0:Tyes--200--16120
BANT260799:0:Tno--1203141166
BANT261594:2:Tno--1203171146
BANT568206:2:Tyes--1203281191
BANT592021:2:Tno--1203271194
BBAC264462:0:Tyes--5915900--
BBAC360095:0:Tyes10531-0--
BBRO257310:0:Tyes-021195930403039
BBUR224326:21:Fno--0----
BCAN483179:1:Tno1819---181801819
BCEN331271:1:Tno0------
BCEN331271:2:Tno-021354
BCEN331272:2:Tyes0------
BCEN331272:3:Tyes-021354
BCER226900:1:Tyes--1203181171
BCER288681:0:Tno--1203131162
BCER315749:1:Tyes-31-0269964
BCER405917:1:Tyes-31203581218
BCER572264:1:Tno-31203151197
BCLA66692:0:Tyes2269-7637647610-
BFRA272559:1:Tyes-201---
BFRA295405:0:Tno-201---
BGAR290434:2:Fyes--0----
BHAL272558:0:Tyes014251423142414221590-
BHEN283166:0:Tyes0174176175177--
BHER314723:0:Fyes-02----
BJAP224911:0:Fyes6243506
BLIC279010:0:Tyes--207--5850
BLON206672:0:Tyes0290-289---
BMAL243160:1:Tno-021354
BMAL320388:1:Tno-021354
BMAL320389:1:Tyes-021354
BMEL224914:1:Tno365---3660365
BMEL359391:1:Tno1670---166901670
BOVI236:1:Tyes1565---156401565
BPAR257311:0:Tno-365367366022092208
BPER257313:0:Tyes-814812813195501
BPET94624:0:Tyes-308530833084149201
BPSE272560:1:Tyes-021354
BPSE320372:1:Tno-021354
BPSE320373:1:Tno-021354
BPUM315750:0:Tyes1123-180--01
BQUI283165:0:Tyes0157--160--
BSP36773:1:Tyes0------
BSP36773:2:Tyes-021354
BSP376:0:Tyes4021348534
BSUB:0:Tyes--190--01
BSUI204722:1:Tyes1784---178301784
BSUI470137:1:Tno1610---160901610
BTHA271848:1:Tno-534201
BTHE226186:0:Tyes-201---
BTHU281309:1:Tno-31203061129
BTHU412694:1:Tno-31202961078
BTRI382640:1:Tyes0177-178180--
BTUR314724:0:Fyes-02----
BVIE269482:7:Tyes-021354
BWEI315730:4:Tyes-31202971148
CACE272562:1:Tyes0-1423-142414162951
CAULO:0:Tyes2-0-1-2
CBEI290402:0:Tyes--1039-1041-0
CBOT36826:1:Tno--12056
CBOT441770:0:Tyes--12056
CBOT441771:0:Tno--12056
CBOT441772:1:Tno--12056
CBOT498213:1:Tno--12056
CBOT508765:1:Tyes-3546-0
CBOT515621:2:Tyes-312056
CBOT536232:0:Tno--12056
CBUR227377:1:Tyes-----01
CBUR360115:1:Tno-----01
CBUR434922:2:Tno-----10
CCHL340177:0:Tyes--63--0-
CDES477974:0:Tyes4805421541023
CDIF272563:1:Tyes-630628629627-0
CDIP257309:0:Tyes-1219-1218--0
CEFF196164:0:Fyes-174517431744--0
CFET360106:0:Tyes-0-1---
CGLU196627:0:Tyes901-0---
CHOM360107:1:Tyes-1-0---
CHUT269798:0:Tyes--7727717730-
CHYD246194:0:Tyes123001294-122812291230
CJAP155077:0:Tyes1222-2570-256901
CJEI306537:0:Tyes13210-1--1321
CJEJ192222:0:Tyes-0-----
CJEJ195099:0:Tno-0-----
CJEJ354242:2:Tyes-0-----
CJEJ360109:0:Tyes-0-----
CJEJ407148:0:Tno-0-----
CKLU431943:1:Tyes-117311751174117611710
CKOR374847:0:Tyes-1-0---
CMET456442:0:Tyes-518102--
CMIC31964:2:Tyes2075205902058--103
CMIC443906:2:Tyes1479149414961495--0
CNOV386415:0:Tyes------0
CPEL335992:0:Tyes--2-160
CPER195102:1:Tyes4021311211922
CPER195103:0:Tno4021313732105
CPER289380:3:Tyes4021311111817
CPHY357809:0:Tyes-0115211531151--
CPSY167879:0:Tyes2031-2358-235710
CSAL290398:0:Tyes0517519-233023202319
CSP501479:6:Fyes0------
CSP501479:8:Fyes-243506
CSP78:2:Tyes0579--576-575
CTEP194439:0:Tyes-236-237-0-
CTET212717:0:Tyes0354-10
CVIO243365:0:Tyes-37937737872010
DARO159087:0:Tyes0-391390392394393
DDES207559:0:Tyes135201351-135027671352
DETH243164:0:Tyes8884657-0
DGEO319795:0:Tyes0------
DGEO319795:1:Tyes-562-56341-0
DHAF138119:0:Tyes155415501548154915530316
DNOD246195:0:Tyes-346348-234076
DOLE96561:0:Tyes-021354
DPSY177439:2:Tyes-30-46-
DRAD243230:2:Tyes-0-1---
DRAD243230:3:Tyes----0--
DRED349161:0:Tyes0139421393310
DSHI398580:5:Tyes624-506
DSP216389:0:Tyes7313120--
DSP255470:0:Tno7550213--
DVUL882:1:Tyes013851-2-0
ECAN269484:0:Tyes---0---
ECAR218491:0:Tyes2091341934173418341610
ECHA205920:0:Tyes---0---
ECOL199310:0:Tno4888406740644066406310
ECOL316407:0:Tno3988314431463145314710
ECOL331111:6:Tno4378366736653666366410
ECOL362663:0:Tno4254346234603461345910
ECOL364106:1:Tno4731384838463847384510
ECOL405955:2:Tyes4184340634043405340310
ECOL409438:6:Tyes4354365736553656365410
ECOL413997:0:Tno3959327732753276327410
ECOL439855:4:Tno4363355435523553355110
ECOL469008:0:Tno366106710691068107001
ECOL481805:0:Tno425105610581057105901
ECOL585034:0:Tno4153346934673468346610
ECOL585035:0:Tno4510363436323633363110
ECOL585055:0:Tno4581374337413742374010
ECOL585056:2:Tno4578382038183819381710
ECOL585057:0:Tno4647405040484049404701
ECOL585397:0:Tno4711389138893890388810
ECOL83334:0:Tno5036430843064307430510
ECOLI:0:Tno4077340033983399339710
ECOO157:0:Tno5017432843264327432510
EFAE226185:3:Tyes-542-5415380-
EFER585054:1:Tyes1835137913771378137601
ELIT314225:0:Tyes042-150
ERUM254945:0:Tyes---0---
ERUM302409:0:Tno---0---
ESP42895:1:Tyes03615361736163618311310
FALN326424:0:Tyes-543554335434-0-
FMAG334413:1:Tyes-3120--
FNOD381764:0:Tyes--0---59
FSP106370:0:Tyes-37913789379001-
FSP1855:0:Tyes12460-1-5712-
FSUC59374:0:Tyes-3120--
GBET391165:0:Tyes10600213-4
GFOR411154:0:Tyes-----0-
GKAU235909:1:Tyes278100101002-277278
GMET269799:1:Tyes0911101210
GOXY290633:5:Tyes1174231-0
GSUL243231:0:Tyes2014-12067
GTHE420246:1:Tyes446186184-1830446
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