CANDIDATE ID: 292

CANDIDATE ID: 292

NUMBER OF GENES: 7
AVERAGE SCORE:    9.9967329e-1 (range=[0.0,1.0])
AVERAGE MINIMUM BLAST P-VAL:    1.0000000e+0

Gene List
List of organisms containing most genes from the group
    Phylogenetic tree highlighting these organisms (opens new page)
List of organisms containing very few or no genes from the group
List of organisms enriched for group
List of organisms depleted for group
Phylogenetic profile similarity with known pathways
Pairwise genome context scores
Pairwise Blast scores
Pathway or protein complex matches in target organism
Genome context matrix
    Genes and their orthologs in genome browser BioCyc pages



GENE LIST:

- EG10784 (pstC) (b3727)
   Products of gene:
     - PSTC-MONOMER (PstC)
     - ABC-27-CPLX (phosphate ABC transporter)
       Reactions:
        ATP + phosphate[periplasmic space] + H2O  ->  ADP + 2 phosphate[cytosol]

- EG10783 (pstB) (b3725)
   Products of gene:
     - PSTB-MONOMER (PstB)
     - ABC-27-CPLX (phosphate ABC transporter)
       Reactions:
        ATP + phosphate[periplasmic space] + H2O  ->  ADP + 2 phosphate[cytosol]

- EG10782 (pstA) (b3726)
   Products of gene:
     - PSTA-MONOMER (PstA)
     - ABC-27-CPLX (phosphate ABC transporter)
       Reactions:
        ATP + phosphate[periplasmic space] + H2O  ->  ADP + 2 phosphate[cytosol]

- EG10735 (phoU) (b3724)
   Products of gene:
     - EG10735-MONOMER (PhoU phosphate transport system protein)

- EG10734 (pstS) (b3728)
   Products of gene:
     - PSTS-MONOMER (PstS)
     - ABC-27-CPLX (phosphate ABC transporter)
       Reactions:
        ATP + phosphate[periplasmic space] + H2O  ->  ADP + 2 phosphate[cytosol]

- EG10733 (phoR) (b0400)
   Products of gene:
     - PHOSPHO-PHOR (PhoR sensory histidine kinase - phosphorylated)
     - PHOR-MONOMER (PhoR)
     - PHOR-CPLX (PhoR sensory histidine kinase)

- EG10728 (phoB) (b0399)
   Products of gene:
     - PHOB-MONOMER (PhoB transcriptional dual regulator)
       Regulatees:
        TU0-13818 (pitB)
        TU0-13999 (yibD)
        TU0-6422 (amn)
        TU0-1341 (argP)
        TU0-1701 (asr)
        TU27 (eda)
        TU864 (phoH)
        TU0-14693 (pstSCA)
        TU0-14692 (pstS)
        TU00202 (pstSCAB-phoU)
        TU00201 (phnCDEEFGHIJKLMNOP)
        TU00086 (phoE)
        TU0-2021 (psiE)
        TU0-5982 (ugpBAECQ)
        TU0-5981 (ugpBAECQ)
        TU00053 (phoBR)
        TU00052 (phoA-psiF)
     - PHOSPHO-PHOB (PhoB-Phosphorylated transcriptional dual regulator)
       Regulatees:
        TU0-13818 (pitB)
        TU0-13999 (yibD)
        TU0-6422 (amn)
        TU0-1341 (argP)
        TU0-1701 (asr)
        TU27 (eda)
        TU864 (phoH)
        TU0-14693 (pstSCA)
        TU0-14692 (pstS)
        TU00202 (pstSCAB-phoU)
        TU00201 (phnCDEEFGHIJKLMNOP)
        TU00086 (phoE)
        TU0-2021 (psiE)
        TU0-5982 (ugpBAECQ)
        TU0-5981 (ugpBAECQ)
        TU00053 (phoBR)
        TU00052 (phoA-psiF)



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ORGANISMS CONTAINING AT LEAST 6 GENES FROM THE GROUP:

Total number of orgs: 207
Effective number of orgs (counting one per cluster within 468 clusters): 128

Organism list
Homologs in each organism in the list
Features enriched in organism list


Follow (ncbi) link, when present, to find the set of organism features for each organism
Org ID  Org Name  # genes in group found in org  
ZMOB264203 ncbi Zymomonas mobilis mobilis ZM47
YPSE349747 ncbi Yersinia pseudotuberculosis IP 317587
YPSE273123 ncbi Yersinia pseudotuberculosis IP 329537
YPES386656 ncbi Yersinia pestis Pestoides F7
YPES377628 ncbi Yersinia pestis Nepal5167
YPES360102 ncbi Yersinia pestis Antiqua7
YPES349746 ncbi Yersinia pestis Angola7
YPES214092 ncbi Yersinia pestis CO927
YPES187410 ncbi Yersinia pestis KIM 107
YENT393305 ncbi Yersinia enterocolitica enterocolitica 80817
XORY360094 ncbi Xanthomonas oryzae pv. oryzae PXO99A7
XORY342109 ncbi Xanthomonas oryzae pv. oryzae MAFF 3110187
XORY291331 ncbi Xanthomonas oryzae pv. oryzae KACC103317
XFAS405440 ncbi Xylella fastidiosa M126
XFAS183190 ncbi Xylella fastidiosa Temecula17
XFAS160492 ncbi Xylella fastidiosa 9a5c7
XCAM487884 Xanthomonas campestris pv. paulliniae7
XCAM316273 ncbi Xanthomonas campestris pv. vesicatoria str. 85-107
XCAM314565 ncbi Xanthomonas campestris pv. campestris str. 80047
XCAM190485 ncbi Xanthomonas campestris pv. campestris str. ATCC 339137
XAXO190486 ncbi Xanthomonas axonopodis pv. citri str. 3067
XAUT78245 ncbi Xanthobacter autotrophicus Py27
VVUL216895 ncbi Vibrio vulnificus CMCP66
VVUL196600 ncbi Vibrio vulnificus YJ0166
VPAR223926 ncbi Vibrio parahaemolyticus RIMD 22106336
VFIS312309 ncbi Vibrio fischeri ES1146
VEIS391735 ncbi Verminephrobacter eiseniae EF01-27
TTEN273068 ncbi Thermoanaerobacter tengcongensis MB46
TSP1755 Thermoanaerobacter sp.6
TPSE340099 ncbi Thermoanaerobacter pseudethanolicus ATCC 332236
TDEN292415 ncbi Thiobacillus denitrificans ATCC 252597
STYP99287 ncbi Salmonella enterica enterica serovar Typhimurium str. LT27
STHE292459 ncbi Symbiobacterium thermophilum IAM 148637
SSP321332 ncbi Synechococcus sp. JA-2-3Ba(2-13)6
SSP321327 ncbi Synechococcus sp. JA-3-3Ab6
SSON300269 ncbi Shigella sonnei Ss0467
SPRO399741 ncbi Serratia proteamaculans 5687
SPNE488221 ncbi Streptococcus pneumoniae 705856
SPNE487214 ncbi Streptococcus pneumoniae Hungary19A-66
SPNE487213 ncbi Streptococcus pneumoniae Taiwan19F-146
SPNE171101 ncbi Streptococcus pneumoniae R66
SPNE170187 ncbi Streptococcus pneumoniae G546
SPNE1313 Streptococcus pneumoniae6
SHIGELLA ncbi Shigella flexneri 2a str. 2457T7
SFLE373384 ncbi Shigella flexneri 5 str. 84017
SFLE198214 ncbi Shigella flexneri 2a str. 3017
SEPI176280 ncbi Staphylococcus epidermidis ATCC 122287
SEPI176279 ncbi Staphylococcus epidermidis RP62A7
SENT454169 ncbi Salmonella enterica enterica serovar Heidelberg str. SL4767
SENT321314 ncbi Salmonella enterica enterica serovar Choleraesuis str. SC-B677
SENT295319 ncbi Salmonella enterica enterica serovar Paratyphi A str. ATCC 91507
SENT220341 ncbi Salmonella enterica enterica serovar Typhi str. CT187
SENT209261 ncbi Salmonella enterica enterica serovar Typhi str. Ty27
SDYS300267 ncbi Shigella dysenteriae Sd1976
SCO ncbi Streptomyces coelicolor A3(2)6
SBOY300268 ncbi Shigella boydii Sb2277
SAUR93062 ncbi Staphylococcus aureus aureus COL7
SAUR93061 ncbi Staphylococcus aureus aureus NCTC 83257
SAUR426430 ncbi Staphylococcus aureus aureus Newman7
SAUR418127 ncbi Staphylococcus aureus aureus Mu37
SAUR367830 Staphylococcus aureus aureus USA3006
SAUR359787 ncbi Staphylococcus aureus aureus JH17
SAUR359786 ncbi Staphylococcus aureus aureus JH97
SAUR282459 ncbi Staphylococcus aureus aureus MSSA4767
SAUR282458 ncbi Staphylococcus aureus aureus MRSA2527
SAUR196620 ncbi Staphylococcus aureus aureus MW27
SAUR158879 ncbi Staphylococcus aureus aureus N3157
SAUR158878 ncbi Staphylococcus aureus aureus Mu507
SAGA211110 ncbi Streptococcus agalactiae NEM3167
SAGA208435 ncbi Streptococcus agalactiae 2603V/R7
SAGA205921 ncbi Streptococcus agalactiae A9097
SACI56780 ncbi Syntrophus aciditrophicus SB6
RXYL266117 ncbi Rubrobacter xylanophilus DSM 99416
RSP357808 ncbi Roseiflexus sp. RS-17
RSOL267608 ncbi Ralstonia solanacearum GMI10007
RPAL316058 ncbi Rhodopseudomonas palustris HaA27
RPAL316057 ncbi Rhodopseudomonas palustris BisB57
RPAL316056 ncbi Rhodopseudomonas palustris BisB187
RPAL316055 ncbi Rhodopseudomonas palustris BisA537
RPAL258594 ncbi Rhodopseudomonas palustris CGA0097
RMET266264 ncbi Ralstonia metallidurans CH347
RLEG216596 ncbi Rhizobium leguminosarum bv. viciae 38417
RFER338969 ncbi Rhodoferax ferrireducens T1187
REUT381666 ncbi Ralstonia eutropha H167
REUT264198 ncbi Ralstonia eutropha JMP1347
RDEN375451 ncbi Roseobacter denitrificans OCh 1146
PSYR223283 ncbi Pseudomonas syringae pv. tomato str. DC30007
PSYR205918 ncbi Pseudomonas syringae pv. syringae B728a7
PSP56811 Psychrobacter sp.7
PSP312153 ncbi Polynucleobacter necessarius asymbioticus QLW-P1DMWA-17
PSP296591 ncbi Polaromonas sp. JS6667
PPUT76869 ncbi Pseudomonas putida GB-17
PPUT351746 ncbi Pseudomonas putida F17
PPUT160488 ncbi Pseudomonas putida KT24407
PNAP365044 ncbi Polaromonas naphthalenivorans CJ27
PMUL272843 ncbi Pasteurella multocida multocida Pm706
PLUM243265 ncbi Photorhabdus luminescens laumondii TTO17
PFLU216595 ncbi Pseudomonas fluorescens SBW257
PCRY335284 ncbi Psychrobacter cryohalolentis K57
PARC259536 ncbi Psychrobacter arcticus 273-47
OIHE221109 ncbi Oceanobacillus iheyensis HTE8316
OCAR504832 ncbi Oligotropha carboxidovorans OM57
NWIN323098 ncbi Nitrobacter winogradskyi Nb-2557
NMUL323848 ncbi Nitrosospira multiformis ATCC 251966
NHAM323097 ncbi Nitrobacter hamburgensis X147
MTHE264732 ncbi Moorella thermoacetica ATCC 390736
MSP409 Methylobacterium sp.7
MPET420662 ncbi Methylibium petroleiphilum PM17
MLOT266835 ncbi Mesorhizobium loti MAFF3030997
MEXT419610 ncbi Methylobacterium extorquens PA17
LWEL386043 ncbi Listeria welshimeri serovar 6b str. SLCC53346
LMON265669 ncbi Listeria monocytogenes 4b F23656
LMON169963 ncbi Listeria monocytogenes EGD-e6
LINN272626 ncbi Listeria innocua Clip112626
LCHO395495 ncbi Leptothrix cholodnii SP-67
LBRE387344 ncbi Lactobacillus brevis ATCC 3676
KPNE272620 ncbi Klebsiella pneumoniae pneumoniae MGH 785787
JSP375286 ncbi Janthinobacterium sp. Marseille7
HMOD498761 ncbi Heliobacterium modesticaldum Ice16
HINF374930 ncbi Haemophilus influenzae PittEE6
HINF281310 ncbi Haemophilus influenzae 86-028NP6
HARS204773 ncbi Herminiimonas arsenicoxydans7
GURA351605 ncbi Geobacter uraniireducens Rf47
GOXY290633 ncbi Gluconobacter oxydans 621H6
GMET269799 ncbi Geobacter metallireducens GS-157
GBET391165 ncbi Granulibacter bethesdensis CGDNIH16
FSP106370 ncbi Frankia sp. CcI36
ESP42895 Enterobacter sp.7
EFER585054 ncbi Escherichia fergusonii ATCC 354697
ECOO157 ncbi Escherichia coli O157:H7 EDL9337
ECOL83334 Escherichia coli O157:H77
ECOL585397 ncbi Escherichia coli ED1a7
ECOL585057 ncbi Escherichia coli IAI397
ECOL585056 ncbi Escherichia coli UMN0267
ECOL585055 ncbi Escherichia coli 559897
ECOL585035 ncbi Escherichia coli S887
ECOL585034 ncbi Escherichia coli IAI17
ECOL481805 ncbi Escherichia coli ATCC 87397
ECOL469008 ncbi Escherichia coli BL21(DE3)7
ECOL439855 ncbi Escherichia coli SMS-3-57
ECOL413997 ncbi Escherichia coli B str. REL6067
ECOL409438 ncbi Escherichia coli SE117
ECOL405955 ncbi Escherichia coli APEC O17
ECOL364106 ncbi Escherichia coli UTI897
ECOL362663 ncbi Escherichia coli 5367
ECOL331111 ncbi Escherichia coli E24377A7
ECOL316407 ncbi Escherichia coli K-12 substr. W31107
ECOL199310 ncbi Escherichia coli CFT0737
ECAR218491 ncbi Pectobacterium atrosepticum SCRI10437
DRED349161 ncbi Desulfotomaculum reducens MI-17
DOLE96561 ncbi Desulfococcus oleovorans Hxd36
DHAF138119 ncbi Desulfitobacterium hafniense Y516
DARO159087 ncbi Dechloromonas aromatica RCB6
CVIO243365 ncbi Chromobacterium violaceum ATCC 124727
CSP501479 Citreicella sp. SE456
CPER289380 ncbi Clostridium perfringens SM1017
CPER195103 ncbi Clostridium perfringens ATCC 131247
CPER195102 ncbi Clostridium perfringens 137
CKLU431943 ncbi Clostridium kluyveri DSM 5556
CHYD246194 ncbi Carboxydothermus hydrogenoformans Z-29016
CDIF272563 ncbi Clostridium difficile 6306
CDES477974 ncbi Candidatus Desulforudis audaxviator MP104C7
CBOT536232 ncbi Clostridium botulinum A2 str. Kyoto6
CBOT515621 ncbi Clostridium botulinum Ba4 str. 6577
CBOT508765 ncbi Clostridium botulinum B str. Eklund 17B6
CBOT441772 ncbi Clostridium botulinum F str. Langeland6
CBOT441771 ncbi Clostridium botulinum A str. Hall6
CBOT441770 ncbi Clostridium botulinum A str. ATCC 193976
CBOT36826 Clostridium botulinum A6
BWEI315730 ncbi Bacillus weihenstephanensis KBAB46
BVIE269482 ncbi Burkholderia vietnamiensis G47
BTHU412694 ncbi Bacillus thuringiensis Al Hakam6
BTHU281309 ncbi Bacillus thuringiensis serovar konkukian str. 97-276
BTHA271848 ncbi Burkholderia thailandensis E2647
BSP376 Bradyrhizobium sp.7
BSP36773 Burkholderia sp.7
BPSE320373 ncbi Burkholderia pseudomallei 6687
BPSE320372 ncbi Burkholderia pseudomallei 1710b7
BPSE272560 ncbi Burkholderia pseudomallei K962437
BPET94624 Bordetella petrii7
BPER257313 ncbi Bordetella pertussis Tohama I7
BPAR257311 ncbi Bordetella parapertussis 128227
BMAL320389 ncbi Burkholderia mallei NCTC 102477
BMAL320388 ncbi Burkholderia mallei SAVP17
BMAL243160 ncbi Burkholderia mallei ATCC 233447
BJAP224911 ncbi Bradyrhizobium japonicum USDA 1107
BCER572264 ncbi Bacillus cereus 03BB1026
BCER405917 Bacillus cereus W6
BCEN331272 ncbi Burkholderia cenocepacia HI24247
BCEN331271 ncbi Burkholderia cenocepacia AU 10547
BBRO257310 ncbi Bordetella bronchiseptica RB507
BANT568206 ncbi Bacillus anthracis CDC 6846
BAMB398577 ncbi Burkholderia ambifaria MC40-67
BAMB339670 ncbi Burkholderia ambifaria AMMD7
ASP62928 ncbi Azoarcus sp. BH727
ASP232721 ncbi Acidovorax sp. JS427
ASP1667 Arthrobacter sp.6
APLE434271 ncbi Actinobacillus pleuropneumoniae serovar 3 str. JL036
APLE416269 ncbi Actinobacillus pleuropneumoniae L206
AORE350688 ncbi Alkaliphilus oremlandii OhILAs7
AFER243159 ncbi Acidithiobacillus ferrooxidans ATCC 232707
ADEH290397 ncbi Anaeromyxobacter dehalogenans 2CP-C6
ACRY349163 ncbi Acidiphilium cryptum JF-57
ACAU438753 ncbi Azorhizobium caulinodans ORS 5717
ABAU360910 ncbi Bordetella avium 197N7
ABAC204669 ncbi Candidatus Koribacter versatilis Ellin3456
AAVE397945 ncbi Acidovorax citrulli AAC00-17


Names of the homologs of the genes in the group in each of these orgs
  EG10784   EG10783   EG10782   EG10735   EG10734   EG10733   EG10728   
ZMOB264203 ZMO1048ZMO1050ZMO1049ZMO1163ZMO1047ZMO1162ZMO1164
YPSE349747 YPSIP31758_4170YPSIP31758_4168YPSIP31758_4169YPSIP31758_4167YPSIP31758_4171YPSIP31758_3135YPSIP31758_3136
YPSE273123 YPTB3962YPTB3960YPTB3961YPTB3959YPTB3963YPTB0918YPTB0917
YPES386656 YPDSF_3919YPDSF_3921YPDSF_3920YPDSF_3922YPDSF_3918YPDSF_2837YPDSF_2838
YPES377628 YPN_3973YPN_3971YPN_3972YPN_3970YPN_3974YPN_0885YPN_0884
YPES360102 YPA_4161YPA_4159YPA_4160YPA_4158YPA_4162YPA_2697YPA_2698
YPES349746 YPANGOLA_A4196YPANGOLA_A4194YPANGOLA_A4195YPANGOLA_A4193YPANGOLA_A4197YPANGOLA_A3285YPANGOLA_A3286
YPES214092 YPO4116YPO4114YPO4115YPO4113YPO4117YPO3204YPO3205
YPES187410 Y4130Y4128Y4129Y4127Y4131Y0979Y0978
YENT393305 YE4200YE4198YE4199YE4196YE4201YE3181YE3182
XORY360094 XOOORF_2135XOOORF_2132XOOORF_2134XOOORF_2131XOOORF_2137XOOORF_4341XOOORF_4340
XORY342109 XOO2335XOO2337XOO2336XOO2338XOO2333XOO3464XOO3463
XORY291331 XOO2463XOO2465XOO2464XOO2466XOO2461XOO3667XOO3666
XFAS405440 XFASM12_1347XFASM12_1349XFASM12_1348XFASM12_1350XFASM12_1346XFASM12_2163
XFAS183190 PD_1203PD_1205PD_1204PD_1206PD_1202PD_1969PD_1970
XFAS160492 XF2142XF2144XF2143XF2145XF2141XF2592XF2593
XCAM487884 XCC-B100_2735XCC-B100_2737XCC-B100_2736XCC-B100_2738XCC-B100_2733XCC-B100_3389XCC-B100_3388
XCAM316273 XCAORF_1799XCAORF_1797XCAORF_1798XCAORF_1796XCAORF_1801XCAORF_1158XCAORF_1160
XCAM314565 XC_2709XC_2711XC_2710XC_2712XC_2707XC_3273XC_3272
XCAM190485 XCC1526XCC1524XCC1525XCC1523XCC1528XCC0962XCC0963
XAXO190486 XAC1576XAC1574XAC1575XAC1573XAC1578XAC1041XAC1042
XAUT78245 XAUT_0198XAUT_0200XAUT_0199XAUT_0201XAUT_0197XAUT_0196XAUT_0202
VVUL216895 VV1_0461VV2_1558VV1_0460VV2_1556VV1_0467VV1_0468
VVUL196600 VV0730VVA0371VV0731VVA0369VV0724VV0723
VPAR223926 VP0576VPA1459VP0577VPA0604VP0570VP0569
VFIS312309 VF1983VF1612VF1982VF1610VF1987VF1988
VEIS391735 VEIS_1292VEIS_1290VEIS_1291VEIS_1289VEIS_1293VEIS_1287VEIS_1288
TTEN273068 TTE1630TTE1628TTE1629TTE1627TTE1632TTE2689
TSP1755 TETH514_1994TETH514_1992TETH514_1993TETH514_1991TETH514_1996TETH514_0588
TPSE340099 TETH39_0828TETH39_0830TETH39_0829TETH39_0831TETH39_0826TETH39_0825
TDEN292415 TBD_1137TBD_1139TBD_1138TBD_0025TBD_1420TBD_0217TBD_0216
STYP99287 STM3856STM3854STM3855STM3853STM3857STM0398STM0397
STHE292459 STH236STH746STH747STH745STH751STH749STH3308
SSP321332 CYB_1076CYB_1912CYB_1075CYB_2526CYB_1077CYB_2856
SSP321327 CYA_1553CYA_1735CYA_1554CYA_0182CYA_1552CYA_1033
SSON300269 SSO_3907SSO_3909SSO_3908SSO_3910SSO_3906SSO_0377SSO_0376
SPRO399741 SPRO_0013SPRO_0015SPRO_0014SPRO_0016SPRO_0012SPRO_1042SPRO_1041
SPNE488221 SP70585_1438SP70585_2193SP70585_2192SP70585_2194SP70585_1439SP70585_1272
SPNE487214 SPH_1530SPH_2274SPH_2273SPH_2275SPH_1531SPH_1340
SPNE487213 SPT_0875SPT_2097SPT_2096SPT_2098SPT_0874SPT_1002
SPNE171101 SPR1256SPR1898SPR1897SPR1899SPR1257SPR1106
SPNE170187 SPN05156SPN09171SPN09172SPN09170SPN05157SPN10007
SPNE1313 SPJ_1298SPJ_2108SPJ_2107SPJ_2109SPJ_1299SPJ_1140
SHIGELLA PSTCPSTBPSTAPHOUPSTSPHORPHOB
SFLE373384 SFV_3780SFV_3782SFV_3781SFV_3783SFV_3779SFV_0365SFV_0364
SFLE198214 AAN45174.1AAN45176.1AAN45175.1AAN45177.1AAN45173.1AAN41995.1AAN41994.1
SEPI176280 SE_1069SE_1067SE_1068SE_1066SE_1070SE_1368SE_1176
SEPI176279 SERP0959SERP0957SERP0958SERP0956SERP0960SERP1255SERP1055
SENT454169 SEHA_C4187SEHA_C4185SEHA_C4186SEHA_C4184SEHA_C4188SEHA_C0497SEHA_C0496
SENT321314 SCH_3770SCH_3768SCH_3769SCH_3767SCH_3771SCH_0439SCH_0438
SENT295319 SPA3697SPA3695SPA3696SPA3694SPA3698SPA2325SPA2326
SENT220341 STY3927STY3929STY3928STY3930STY3926STY0433STY0432
SENT209261 T3667T3669T3668T3670T3666T2466T2467
SDYS300267 SDY_4023SDY_4025SDY_4024SDY_4026SDY_4022SDY_0338
SCO SCO4141SCO4139SCO4140SCO4142SCO4229SCO3741
SBOY300268 SBO_3655SBO_3657SBO_3656SBO_3658SBO_3654SBO_0294SBO_0293
SAUR93062 SACOL1423SACOL1421SACOL1422SACOL1420SACOL1424SACOL1739SACOL1535
SAUR93061 SAOUHSC_01387SAOUHSC_01385SAOUHSC_01386SAOUHSC_01384SAOUHSC_01389SAOUHSC_01799SAOUHSC_01586
SAUR426430 NWMN_1299NWMN_1297NWMN_1298NWMN_1296NWMN_1300NWMN_1585NWMN_1400
SAUR418127 SAHV_1376SAHV_1374SAHV_1375SAHV_1373SAHV_1377SAHV_1678SAHV_1480
SAUR367830 SAUSA300_1282SAUSA300_1280SAUSA300_1281SAUSA300_1279SAUSA300_1283SAUSA300_1442
SAUR359787 SAURJH1_1478SAURJH1_1476SAURJH1_1477SAURJH1_1475SAURJH1_1479SAURJH1_1783SAURJH1_1580
SAUR359786 SAURJH9_1449SAURJH9_1447SAURJH9_1448SAURJH9_1446SAURJH9_1450SAURJH9_1749SAURJH9_1549
SAUR282459 SAS1329SAS1327SAS1328SAS1326SAS1330SAS1620SAS1432
SAUR282458 SAR1401SAR1399SAR1400SAR1398SAR1402SAR1771SAR1568
SAUR196620 MW1276MW1274MW1275MW1273MW1277MW1636MW1446
SAUR158879 SA1220SA1218SA1219SA1217SA1221SA1515SA1323
SAUR158878 SAV1388SAV1386SAV1387SAV1385SAV1389SAV1692SAV1492
SAGA211110 GBS1952GBS1950GBS1951GBS1022GBS1027GBS0742GBS1948
SAGA208435 SAG_1965SAG_1963SAG_1964SAG_0987SAG_0992SAG_0720SAG_1961
SAGA205921 SAK_1926SAK_1924SAK_1925SAK_1082SAK_1087SAK_0846SAK_1922
SACI56780 SYN_00057SYN_00059SYN_00058SYN_00060SYN_00061SYN_00981
RXYL266117 RXYL_0819RXYL_0821RXYL_0820RXYL_0818RXYL_2982RXYL_0378
RSP357808 ROSERS_4151ROSERS_4148ROSERS_4150ROSERS_0992ROSERS_4152ROSERS_3817ROSERS_0805
RSOL267608 RSC1530RSC1532RSC1531RSC1533RSC1529RSC1535RSC1534
RPAL316058 RPB_0777RPB_0779RPB_0778RPB_0780RPB_0776RPB_0775RPB_0781
RPAL316057 RPD_0889RPD_0891RPD_0890RPD_0892RPD_0888RPD_0887RPD_0893
RPAL316056 RPC_4922RPC_4920RPC_4921RPC_4919RPC_4923RPC_4924RPC_4918
RPAL316055 RPE_4890RPE_4888RPE_4889RPE_4887RPE_4891RPE_4892RPE_4886
RPAL258594 RPA4779RPA4777RPA4778RPA4776RPA4780RPA4781RPA4775
RMET266264 RMET_2184RMET_2182RMET_2183RMET_2181RMET_2185RMET_2179RMET_2180
RLEG216596 RL1683RL1685RL1684RL0546RL1682RL0540RL0547
RFER338969 RFER_0582RFER_0580RFER_0581RFER_0579RFER_0583RFER_0577RFER_0578
REUT381666 H16_A2443H16_A2441H16_A2442H16_A2440H16_A2444H16_A2438H16_A2439
REUT264198 REUT_A2166REUT_A2164REUT_A2165REUT_A2163REUT_A2167REUT_A2161REUT_A2162
RDEN375451 RD1_2643RD1_2646RD1_2644RD1_2647RD1_2641RD1_2648
PSYR223283 PSPTO_3268PSPTO_3266PSPTO_3267PSPTO_5483PSPTO_3269PSPTO_5478PSPTO_5477
PSYR205918 PSYR_3105PSYR_3103PSYR_3104PSYR_5037PSYR_3106PSYR_5033PSYR_5032
PSP56811 PSYCPRWF_2269PSYCPRWF_2267PSYCPRWF_2268PSYCPRWF_2266PSYCPRWF_2270PSYCPRWF_2092PSYCPRWF_2093
PSP312153 PNUC_1601PNUC_1599PNUC_1600PNUC_1598PNUC_1602PNUC_1596PNUC_1597
PSP296591 BPRO_2253BPRO_2255BPRO_2254BPRO_2256BPRO_2252BPRO_2258BPRO_2257
PPUT76869 PPUTGB1_3146PPUTGB1_5373PPUTGB1_3145PPUTGB1_5372PPUTGB1_3147PPUTGB1_5368PPUTGB1_5367
PPUT351746 PPUT_2165PPUT_5234PPUT_2166PPUT_5233PPUT_2164PPUT_5229PPUT_5228
PPUT160488 PP_2657PP_5326PP_2658PP_5325PP_2656PP_5321PP_5320
PNAP365044 PNAP_2205PNAP_2203PNAP_2204PNAP_2202PNAP_2206PNAP_2200PNAP_2201
PMUL272843 PM0435PM0433PM0434PM0436PM0431PM0432
PLUM243265 PLU0215PLU0217PLU0216PLU0218PLU0214PLU3910PLU3911
PFLU216595 PFLU3317PFLU6045PFLU3316PFLU6044PFLU3318PFLU6040PFLU6039
PCRY335284 PCRYO_2220PCRYO_2222PCRYO_2221PCRYO_2223PCRYO_2219PCRYO_2215PCRYO_2216
PARC259536 PSYC_1927PSYC_1929PSYC_1928PSYC_1930PSYC_1926PSYC_1922PSYC_1923
OIHE221109 OB3135OB3133OB3134OB1929OB2164OB1819
OCAR504832 OCAR_4647OCAR_4649OCAR_4648OCAR_4650OCAR_4646OCAR_4645OCAR_4651
NWIN323098 NWI_0507NWI_0509NWI_0508NWI_0510NWI_0506NWI_0505NWI_0511
NMUL323848 NMUL_A1086NMUL_A1088NMUL_A1087NMUL_A0435NMUL_A2232NMUL_A2231
NHAM323097 NHAM_0636NHAM_0638NHAM_0637NHAM_0639NHAM_0635NHAM_0634NHAM_0640
MTHE264732 MOTH_0112MOTH_0114MOTH_0115MOTH_0473MOTH_2494MOTH_0070
MSP409 M446_6689M446_6687M446_6688M446_6686M446_6690M446_1659M446_6685
MPET420662 MPE_A1273MPE_A1275MPE_A1274MPE_A1276MPE_A1272MPE_A1278MPE_A1277
MLOT266835 MLL3722MLL3719MLL3720MLR5643MLL3723MLR5642MLL3716
MEXT419610 MEXT_4714MEXT_4716MEXT_4715MEXT_4717MEXT_4713MEXT_2689MEXT_4718
LWEL386043 LWE2443LWE2445LWE2442LWE2447LWE2448LWE1974
LMON265669 LMOF2365_2469LMOF2365_2470LMOF2365_2467LMOF2365_2472LMOF2365_2473LMOF2365_1978
LMON169963 LMO2496LMO2497LMO2494LMO2499LMO2500LMO1948
LINN272626 LIN2639LIN2640LIN2637LIN2642LIN2643LIN2062
LCHO395495 LCHO_2813LCHO_2811LCHO_2812LCHO_2810LCHO_2814LCHO_2809LCHO_1659
LBRE387344 LVIS_1865LVIS_1864LVIS_0638LVIS_1866LVIS_0030LVIS_0631
KPNE272620 GKPORF_B3473GKPORF_B3471GKPORF_B3472GKPORF_B3470GKPORF_B3474GKPORF_B4667GKPORF_B4666
JSP375286 MMA_2290MMA_2288MMA_2289MMA_2287MMA_2291MMA_2285MMA_2286
HMOD498761 HM1_2083HM1_2085HM1_2084HM1_2086HM1_2079HM1_2078
HINF374930 CGSHIEE_04465CGSHIEE_04455CGSHIEE_04460CGSHIEE_04470CGSHIEE_04445CGSHIEE_04450
HINF281310 NTHI1775NTHI1777NTHI1776NTHI1774NTHI1779NTHI1778
HARS204773 HEAR1108HEAR1110HEAR1109HEAR1111HEAR1107HEAR1113HEAR1112
GURA351605 GURA_2559GURA_2561GURA_2560GURA_2562GURA_2558GURA_1571GURA_2556
GOXY290633 GOX0706GOX0704GOX0705GOX0703GOX0920GOX0702
GMET269799 GMET_2702GMET_2704GMET_2703GMET_2705GMET_2701GMET_2694GMET_2693
GBET391165 GBCGDNIH1_0911GBCGDNIH1_0913GBCGDNIH1_0912GBCGDNIH1_0914GBCGDNIH1_0910GBCGDNIH1_0915
FSP106370 FRANCCI3_4264FRANCCI3_4262FRANCCI3_4263FRANCCI3_0469FRANCCI3_4265FRANCCI3_0470
ESP42895 ENT638_4138ENT638_4140ENT638_4139ENT638_4141ENT638_4137ENT638_0868ENT638_0867
EFER585054 EFER_4025EFER_4023EFER_4024EFER_4022EFER_4026EFER_2626EFER_2627
ECOO157 PSTCPSTBPSTAPHOUPSTSPHORPHOB
ECOL83334 ECS4663ECS4661ECS4662ECS4660ECS4664ECS0450ECS0449
ECOL585397 ECED1_4417ECED1_4415ECED1_4416ECED1_4414ECED1_4418ECED1_0422ECED1_0421
ECOL585057 ECIAI39_4327ECIAI39_4325ECIAI39_4326ECIAI39_4324ECIAI39_4328ECIAI39_0282ECIAI39_0283
ECOL585056 ECUMN_4253ECUMN_4251ECUMN_4252ECUMN_4250ECUMN_4254ECUMN_0437ECUMN_0436
ECOL585055 EC55989_4198EC55989_4196EC55989_4197EC55989_4195EC55989_4199EC55989_0408EC55989_0407
ECOL585035 ECS88_4149ECS88_4147ECS88_4148ECS88_4146ECS88_4150ECS88_0394ECS88_0393
ECOL585034 ECIAI1_3907ECIAI1_3905ECIAI1_3906ECIAI1_3904ECIAI1_3908ECIAI1_0399ECIAI1_0398
ECOL481805 ECOLC_4267ECOLC_4269ECOLC_4268ECOLC_4270ECOLC_4266ECOLC_3233ECOLC_3234
ECOL469008 ECBD_4305ECBD_4307ECBD_4306ECBD_4308ECBD_4304ECBD_3261ECBD_3262
ECOL439855 ECSMS35_4091ECSMS35_4089ECSMS35_4090ECSMS35_4088ECSMS35_4092ECSMS35_0430ECSMS35_0429
ECOL413997 ECB_03611ECB_03609ECB_03610ECB_03608ECB_03612ECB_00348ECB_00347
ECOL409438 ECSE_4013ECSE_4011ECSE_4012ECSE_4010ECSE_4014ECSE_0420ECSE_0419
ECOL405955 APECO1_2734APECO1_2736APECO1_2735APECO1_2737APECO1_2733APECO1_1610APECO1_1611
ECOL364106 UTI89_C4279UTI89_C4277UTI89_C4278UTI89_C4276UTI89_C4280UTI89_C0421UTI89_C0420
ECOL362663 ECP_3926ECP_3924ECP_3925ECP_3923ECP_3927ECP_0459ECP_0458
ECOL331111 ECE24377A_4238ECE24377A_4236ECE24377A_4237ECE24377A_4235ECE24377A_4239ECE24377A_0428ECE24377A_0427
ECOL316407 ECK3720:JW3705:B3727ECK3718:JW3703:B3725ECK3719:JW3704:B3726ECK3717:JW3702:B3724ECK3721:JW3706:B3728ECK0394:JW0390:B0400ECK0393:JW0389:B0399
ECOL199310 C4652C4649C4651C4648C4653C0509C0508
ECAR218491 ECA4476ECA4474ECA4475ECA4473ECA4477ECA1111ECA1110
DRED349161 DRED_2105DRED_0709DRED_2104DRED_0710DRED_2106DRED_0708DRED_0707
DOLE96561 DOLE_1926DOLE_1928DOLE_1927DOLE_1929DOLE_1931DOLE_1930
DHAF138119 DSY4117DSY4115DSY4116DSY4120DSY2575DSY2891
DARO159087 DARO_3565DARO_3564DARO_3566DARO_4070DARO_3568DARO_3567
CVIO243365 CV_0937CV_0935CV_0936CV_1261CV_0938CV_0563CV_0562
CSP501479 CSE45_1810CSE45_1812CSE45_1811CSE45_1813CSE45_1808CSE45_1814
CPER289380 CPR_0605CPR_0607CPR_0606CPR_0608CPR_0604CPR_1728CPR_2497
CPER195103 CPF_0619CPF_0621CPF_0620CPF_0622CPF_0618CPF_2010CPF_2811
CPER195102 CPE0638CPE0640CPE0639CPE0641CPE0637CPE1757CPE2488
CKLU431943 CKL_1349CKL_1351CKL_1350CKL_1352CKL_1347CKL_0148
CHYD246194 CHY_0784CHY_2116CHY_2045CHY_0785CHY_2046CHY_2047
CDIF272563 CD3263CD3261CD3262CD3260CD3268CD2638
CDES477974 DAUD_1959DAUD_1416DAUD_1958DAUD_1415DAUD_1956DAUD_1418DAUD_1419
CBOT536232 CLM_2827CLM_2828CLM_2826CLM_2830CLM_2831CLM_2832
CBOT515621 CLJ_B2755CLJ_B2753CLJ_B2754CLJ_B2752CLJ_B2756CLJ_B2757CLJ_B2758
CBOT508765 CLL_A1198CLL_A1200CLL_A1199CLL_A1201CLL_A1197CLL_A1195
CBOT441772 CLI_2585CLI_2586CLI_2584CLI_2588CLI_2589CLI_2590
CBOT441771 CLC_2381CLC_2382CLC_2380CLC_2384CLC_2385CLC_2386
CBOT441770 CLB_2399CLB_2400CLB_2398CLB_2402CLB_2403CLB_2404
CBOT36826 CBO2522CBO2523CBO2521CBO2525CBO2526CBO2527
BWEI315730 BCERKBAB4_4124BCERKBAB4_4122BCERKBAB4_4123BCERKBAB4_4121BCERKBAB4_4418BCERKBAB4_5259
BVIE269482 BCEP1808_1254BCEP1808_1256BCEP1808_1255BCEP1808_1257BCEP1808_1253BCEP1808_1259BCEP1808_1258
BTHU412694 BALH_3864BALH_3862BALH_3863BALH_3861BALH_4172BALH_4973
BTHU281309 BT9727_4011BT9727_4009BT9727_4010BT9727_4008BT9727_4318BT9727_5147
BTHA271848 BTH_I2772BTH_I2770BTH_I2771BTH_I2769BTH_I2773BTH_I2767BTH_I2768
BSP376 BRADO1675BRADO1677BRADO1676BRADO1678BRADO1674BRADO6782BRADO1679
BSP36773 BCEP18194_A4444BCEP18194_A4446BCEP18194_A4445BCEP18194_A4447BCEP18194_C7254BCEP18194_A4449BCEP18194_A4448
BPSE320373 BURPS668_1486BURPS668_1488BURPS668_1487BURPS668_1489BURPS668_1485BURPS668_1491BURPS668_1490
BPSE320372 BURPS1710B_A1714BURPS1710B_A1716BURPS1710B_A1715BURPS1710B_A1717BURPS1710B_A1713BURPS1710B_A1720BURPS1710B_A1718
BPSE272560 BPSL1360BPSL1362BPSL1361BPSL1363BPSL1359BPSL1365BPSL1364
BPET94624 BPET3524BPET3522BPET3523BPET1958BPET3525BPET0480BPET0481
BPER257313 BP1070BP1068BP1069BP2338BP1071BP0159BP0160
BPAR257311 BPP2074BPP2076BPP2075BPP1701BPP2073BPP3997BPP3996
BMAL320389 BMA10247_0575BMA10247_0577BMA10247_0576BMA10247_0578BMA10247_0574BMA10247_0580BMA10247_0579
BMAL320388 BMASAVP1_A1292BMASAVP1_A1294BMASAVP1_A1293BMASAVP1_A1295BMASAVP1_A1291BMASAVP1_A1297BMASAVP1_A1296
BMAL243160 BMA_0781BMA_0783BMA_0782BMA_0784BMA_0780BMA_0786BMA_0785
BJAP224911 BLR1092BLR1094BLR1093BLR1095BLR1091BLR1090BLR1096
BCER572264 BCA_4382BCA_4380BCA_4381BCA_4379BCA_4698BCA_5617
BCER405917 BCE_4351BCE_4349BCE_4350BCE_4348BCE_4719BCE_5615
BCEN331272 BCEN2424_1301BCEN2424_1303BCEN2424_1302BCEN2424_1304BCEN2424_1300BCEN2424_1306BCEN2424_1305
BCEN331271 BCEN_0820BCEN_0822BCEN_0821BCEN_0823BCEN_0819BCEN_0825BCEN_0824
BBRO257310 BB1467BB1469BB1468BB3407BB1466BB4470BB4469
BANT568206 BAMEG_4530BAMEG_4531BAMEG_4529BAMEG_3871BAMEG_4863BAMEG_5763
BAMB398577 BAMMC406_1190BAMMC406_1192BAMMC406_1191BAMMC406_1193BAMMC406_1189BAMMC406_1195BAMMC406_1194
BAMB339670 BAMB_1178BAMB_1180BAMB_1179BAMB_1181BAMB_1177BAMB_1183BAMB_1182
ASP62928 AZO1391AZO1393AZO1392AZO2827AZO1390AZO0165AZO0164
ASP232721 AJS_2371AJS_2369AJS_2370AJS_2368AJS_2372AJS_2366AJS_2367
ASP1667 ARTH_0203ARTH_0205ARTH_0204ARTH_0202ARTH_0723ARTH_1441
APLE434271 APJL_1271APJL_1269APJL_1270APJL_1272APJL_1267APJL_1268
APLE416269 APL_1260APL_1258APL_1259APL_1261APL_1256APL_1257
AORE350688 CLOS_0267CLOS_1119CLOS_1118CLOS_0270CLOS_0266CLOS_1393CLOS_2784
AFER243159 AFE_1647AFE_1645AFE_1646AFE_1644AFE_1648AFE_1649AFE_1650
ADEH290397 ADEH_4005ADEH_4003ADEH_4002ADEH_4006ADEH_4008ADEH_4009
ACRY349163 ACRY_1916ACRY_2949ACRY_1917ACRY_2950ACRY_1915ACRY_1535ACRY_2951
ACAU438753 AZC_4036AZC_4034AZC_4035AZC_4033AZC_4037AZC_4038AZC_4032
ABAU360910 BAV0940BAV0942BAV0941BAV2245BAV0939BAV3091BAV3090
ABAC204669 ACID345_2974ACID345_2972ACID345_2973ACID345_2971ACID345_2975ACID345_2989
AAVE397945 AAVE_2627AAVE_2629AAVE_2628AAVE_2630AAVE_2626AAVE_2632AAVE_2631


Organism features enriched in list (features available for 192 out of the 207 orgs in the list)
Feature    Pvalue       Num occurrences in list  Total num occurrences  
Arrangment:Clusters 0.00021231317
Arrangment:Pairs 2.112e-658112
Disease:Bubonic_plague 0.001209966
Disease:Dysentery 0.001209966
Disease:Gastroenteritis 0.00115851013
Disease:Pneumonia 0.0027806912
Disease:Toxic-shock_syndrome_and_staphylococcal_scarlet_fever 4.059e-61111
Endospores:No 5.284e-646211
GC_Content_Range4:0-40 0.000016248213
GC_Content_Range4:60-100 0.000197865145
GC_Content_Range7:30-40 0.000339838166
GC_Content_Range7:40-50 0.000895225117
GC_Content_Range7:50-60 0.000014754107
GC_Content_Range7:60-70 0.000194661134
Genome_Size_Range5:0-2 8.857e-283155
Genome_Size_Range5:4-6 7.594e-15102184
Genome_Size_Range9:1-2 1.746e-213128
Genome_Size_Range9:4-5 0.00002754996
Genome_Size_Range9:5-6 7.287e-95388
Gram_Stain:Gram_Neg 0.0003309128333
Habitat:Aquatic 0.00052331791
Habitat:Multiple 3.144e-785178
Motility:No 0.007692339151
Motility:Yes 0.0001322108267
Optimal_temp.:25-30 0.00022471419
Optimal_temp.:30-37 0.00001061518
Oxygen_Req:Aerobic 0.000740345185
Oxygen_Req:Anaerobic 0.007522224102
Oxygen_Req:Facultative 9.506e-12103201
Pathogenic_in:Human 0.003016884213
Pathogenic_in:No 0.000137255226
Pathogenic_in:Plant 0.00563171015
Shape:Rod 2.621e-12152347
Shape:Sphere 0.0042634119
Temp._range:Hyperthermophilic 0.0055756223
Temp._range:Mesophilic 0.0000289173473



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ORGANISMS CONTAINING AT MOST 1 GENES FROM THE GROUP:

Total number of orgs: 121
Effective number of orgs (counting one per cluster within 468 clusters): 90

Organism list
Homologs in each organism in the list
Features enriched in organism list


Follow (ncbi) link, when present, to find the set of organism features for each organism
Org ID  Org Name  # genes in group found in org  
WSUC273121 ncbi Wolinella succinogenes DSM 17401
WPIP955 Wolbachia pipientis0
WPIP80849 Wolbachia endosymbiont of Brugia malayi1
UURE95667 Ureaplasma urealyticum serovar 130
UURE95664 Ureaplasma urealyticum serovar 100
UPAR505682 ncbi Ureaplasma parvum serovar 3 str. ATCC 278150
TVOL273116 ncbi Thermoplasma volcanium GSS10
TPAL243276 ncbi Treponema pallidum pallidum Nichols0
TDEN243275 ncbi Treponema denticola ATCC 354050
TACI273075 ncbi Thermoplasma acidophilum DSM 17280
STOK273063 ncbi Sulfolobus tokodaii 70
SPYO193567 ncbi Streptococcus pyogenes SSI-11
SACI330779 ncbi Sulfolobus acidocaldarius DSM 6390
RTYP257363 ncbi Rickettsia typhi Wilmington0
RRIC452659 ncbi Rickettsia rickettsii Iowa0
RRIC392021 ncbi Rickettsia rickettsii Sheila Smith0
RPRO272947 ncbi Rickettsia prowazekii Madrid E0
RMAS416276 ncbi Rickettsia massiliae MTU50
RFEL315456 ncbi Rickettsia felis URRWXCal20
RCON272944 ncbi Rickettsia conorii Malish 70
RCAN293613 ncbi Rickettsia canadensis McKiel0
RBEL391896 ncbi Rickettsia bellii OSU 85-3890
RBEL336407 ncbi Rickettsia bellii RML369-C0
RALB246199 Ruminococcus albus 80
RAKA293614 ncbi Rickettsia akari Hartford0
PTOR263820 ncbi Picrophilus torridus DSM 97900
PRUM264731 ncbi Prevotella ruminicola 230
PINT246198 Prevotella intermedia 170
PHOR70601 ncbi Pyrococcus horikoshii OT30
PGIN242619 ncbi Porphyromonas gingivalis W830
PAST100379 Onion yellows phytoplasma0
OTSU357244 ncbi Orientia tsutsugamushi Boryong0
NSEN222891 ncbi Neorickettsia sennetsu Miyayama0
NMEN374833 ncbi Neisseria meningitidis 0534420
NMEN272831 ncbi Neisseria meningitidis FAM180
NMEN122587 ncbi Neisseria meningitidis Z24910
NMEN122586 ncbi Neisseria meningitidis MC580
NGON242231 ncbi Neisseria gonorrhoeae FA 10900
MSYN262723 ncbi Mycoplasma synoviae 530
MSUC221988 ncbi Mannheimia succiniciproducens MBEL55E0
MSED399549 ncbi Metallosphaera sedula DSM 53480
MPUL272635 ncbi Mycoplasma pulmonis UAB CTIP0
MPNE272634 ncbi Mycoplasma pneumoniae M1290
MPEN272633 ncbi Mycoplasma penetrans HF-21
MMYC272632 ncbi Mycoplasma mycoides mycoides SC str. PG11
MMOB267748 ncbi Mycoplasma mobile 163K0
MHYO295358 ncbi Mycoplasma hyopneumoniae 2320
MHYO262722 ncbi Mycoplasma hyopneumoniae 74480
MHYO262719 ncbi Mycoplasma hyopneumoniae J0
MGEN243273 ncbi Mycoplasma genitalium G370
MFLO265311 ncbi Mesoplasma florum L10
MCAP340047 ncbi Mycoplasma capricolum capricolum ATCC 273431
MART243272 ncbi Mycoplasma arthritidis 158L3-10
LPNE400673 ncbi Legionella pneumophila Corby0
LPNE297246 ncbi Legionella pneumophila Paris0
LPNE297245 ncbi Legionella pneumophila Lens0
LPNE272624 ncbi Legionella pneumophila pneumophila Philadelphia 10
LINT363253 ncbi Lawsonia intracellularis PHE/MN1-001
LBOR355277 ncbi Leptospira borgpetersenii serovar Hardjo-bovis JB1970
LBOR355276 ncbi Leptospira borgpetersenii serovar Hardjo-bovis L5500
LBIF456481 ncbi Leptospira biflexa serovar Patoc strain Patoc 1 (Paris)0
LBIF355278 ncbi Leptospira biflexa serovar Patoc strain Patoc 1 (Ames)0
HSOM228400 ncbi Haemophilus somnus 23360
HSOM205914 ncbi Haemophilus somnus 129PT0
HPYL85963 ncbi Helicobacter pylori J990
HPYL357544 ncbi Helicobacter pylori HPAG10
HPY ncbi Helicobacter pylori 266950
HHEP235279 ncbi Helicobacter hepaticus ATCC 514490
HDUC233412 ncbi Haemophilus ducreyi 35000HP0
HACI382638 ncbi Helicobacter acinonychis Sheeba0
GFOR411154 ncbi Gramella forsetii KT08031
FTUL458234 ncbi Francisella tularensis holarctica FTNF002-000
FTUL418136 ncbi Francisella tularensis tularensis WY96-34180
FTUL401614 ncbi Francisella novicida U1120
FTUL393115 ncbi Francisella tularensis tularensis FSC1980
FTUL393011 ncbi Francisella tularensis holarctica OSU180
FTUL351581 Francisella tularensis holarctica FSC2000
FRANT ncbi Francisella tularensis tularensis SCHU S40
FPHI484022 ncbi Francisella philomiragia philomiragia ATCC 250170
FNUC190304 ncbi Fusobacterium nucleatum nucleatum ATCC 255860
FJOH376686 ncbi Flavobacterium johnsoniae UW1010
ERUM302409 ncbi Ehrlichia ruminantium Gardel1
ERUM254945 ncbi Ehrlichia ruminantium Welgevonden1
ECHA205920 ncbi Ehrlichia chaffeensis Arkansas1
ECAN269484 ncbi Ehrlichia canis Jake1
CVES412965 ncbi Candidatus Vesicomyosocius okutanii HA0
CTRA471473 ncbi Chlamydia trachomatis L2b/UCH-1/proctitis0
CTRA471472 ncbi Chlamydia trachomatis 434/Bu0
CSUL444179 ncbi Candidatus Sulcia muelleri GWSS0
CRUT413404 ncbi Candidatus Ruthia magnifica Cm (Calyptogena magnifica)0
CPRO264201 ncbi Candidatus Protochlamydia amoebophila UWE250
CPNE182082 ncbi Chlamydophila pneumoniae TW-1830
CPNE138677 ncbi Chlamydophila pneumoniae J1380
CPNE115713 ncbi Chlamydophila pneumoniae CWL0290
CPNE115711 ncbi Chlamydophila pneumoniae AR390
CNOV386415 ncbi Clostridium novyi NT1
CMUR243161 ncbi Chlamydia muridarum Nigg0
CMAQ397948 ncbi Caldivirga maquilingensis IC-1670
CJEJ407148 ncbi Campylobacter jejuni jejuni 811161
CJEJ360109 ncbi Campylobacter jejuni doylei 269.971
CJEJ354242 ncbi Campylobacter jejuni jejuni 81-1761
CJEJ195099 ncbi Campylobacter jejuni RM12211
CJEJ192222 ncbi Campylobacter jejuni jejuni NCTC 111681
CFEL264202 ncbi Chlamydophila felis Fe/C-560
CCUR360105 ncbi Campylobacter curvus 525.920
CCON360104 ncbi Campylobacter concisus 138260
CCAV227941 ncbi Chlamydophila caviae GPIC0
CBLO291272 ncbi Candidatus Blochmannia pennsylvanicus BPEN0
CBLO203907 ncbi Candidatus Blochmannia floridanus0
CABO218497 ncbi Chlamydophila abortus S26/30
BXEN266265 ncbi Burkholderia xenovorans LB4001
BSP107806 ncbi Buchnera aphidicola APS (Acyrthosiphon pisum)0
BGAR290434 ncbi Borrelia garinii PBi1
BCIC186490 Candidatus Baumannia cicadellinicola0
BBUR224326 ncbi Borrelia burgdorferi B311
BAPH372461 ncbi Buchnera aphidicola Cc (Cinara cedri)0
BAPH198804 ncbi Buchnera aphidicola Sg (Schizaphis graminum)0
AYEL322098 ncbi Aster yellows witches-broom phytoplasma AYWB0
AURANTIMONAS Aurantimonas manganoxydans SI85-9A10
APHA212042 ncbi Anaplasma phagocytophilum HZ0
AMAR234826 ncbi Anaplasma marginale St. Maries0


Names of the homologs of the genes in the group in each of these orgs
  EG10784   EG10783   EG10782   EG10735   EG10734   EG10733   EG10728   
WSUC273121 WS0944
WPIP955
WPIP80849 WB_1058
UURE95667
UURE95664
UPAR505682
TVOL273116
TPAL243276
TDEN243275
TACI273075
STOK273063
SPYO193567 SPS1076
SACI330779
RTYP257363
RRIC452659
RRIC392021
RPRO272947
RMAS416276
RFEL315456
RCON272944
RCAN293613
RBEL391896
RBEL336407
RALB246199
RAKA293614
PTOR263820
PRUM264731
PINT246198
PHOR70601
PGIN242619
PAST100379
OTSU357244
NSEN222891
NMEN374833
NMEN272831
NMEN122587
NMEN122586
NGON242231
MSYN262723
MSUC221988
MSED399549
MPUL272635
MPNE272634
MPEN272633 MYPE9350
MMYC272632 MSC_0486
MMOB267748
MHYO295358
MHYO262722
MHYO262719
MGEN243273
MFLO265311
MCAP340047 MCAP_0484
MART243272
LPNE400673
LPNE297246
LPNE297245
LPNE272624
LINT363253 LI1028
LBOR355277
LBOR355276
LBIF456481
LBIF355278
HSOM228400
HSOM205914
HPYL85963
HPYL357544
HPY
HHEP235279
HDUC233412
HACI382638
GFOR411154 GFO_0119
FTUL458234
FTUL418136
FTUL401614
FTUL393115
FTUL393011
FTUL351581
FRANT
FPHI484022
FNUC190304
FJOH376686
ERUM302409 ERGA_CDS_05430
ERUM254945 ERWE_CDS_05540
ECHA205920 ECH_0492
ECAN269484 ECAJ_0536
CVES412965
CTRA471473
CTRA471472
CSUL444179
CRUT413404
CPRO264201
CPNE182082
CPNE138677
CPNE115713
CPNE115711
CNOV386415 NT01CX_1016
CMUR243161
CMAQ397948
CJEJ407148 C8J_0576
CJEJ360109 JJD26997_1055
CJEJ354242 CJJ81176_0643
CJEJ195099 CJE_0717
CJEJ192222 CJ0614
CFEL264202
CCUR360105
CCON360104
CCAV227941
CBLO291272
CBLO203907
CABO218497
BXEN266265 BXE_B2766
BSP107806
BGAR290434 BG0221
BCIC186490
BBUR224326 BB_0218
BAPH372461
BAPH198804
AYEL322098
AURANTIMONAS
APHA212042
AMAR234826


Organism features enriched in list (features available for 111 out of the 121 orgs in the list)
Feature    Pvalue       Num occurrences in list  Total num occurrences  
Arrangment:Chains 0.0018583892
Arrangment:Pairs 0.00002087112
Disease:Legionnaire's_disease 0.001257144
Disease:Meningitis_and_septicemia 0.001257144
Disease:None 0.0047186458
Disease:Pharyngitis 1.400e-688
Disease:Rocky_Mountain_Spotted_Fever 0.006751133
Disease:Tularemia 0.000232355
Disease:bronchitis_and_pneumonitis 1.400e-688
Disease:periodontal_disease 0.006751133
Endospores:Yes 0.0001061153
GC_Content_Range4:0-40 4.899e-2083213
GC_Content_Range4:40-60 0.000225327224
GC_Content_Range4:60-100 1.358e-141145
GC_Content_Range7:0-30 7.213e-102747
GC_Content_Range7:30-40 2.568e-856166
GC_Content_Range7:50-60 0.00001276107
GC_Content_Range7:60-70 2.875e-131134
Genome_Size_Range5:0-2 7.015e-2979155
Genome_Size_Range5:6-10 0.0022290247
Genome_Size_Range9:0-1 3.198e-142327
Genome_Size_Range9:1-2 4.781e-1456128
Genome_Size_Range9:6-8 0.0023529138
Gram_Stain:Gram_Neg 4.153e-888333
Gram_Stain:Gram_Pos 8.302e-142150
Habitat:Aquatic 1.991e-6391
Habitat:Host-associated 1.102e-1880206
Habitat:Multiple 3.101e-615178
Habitat:Terrestrial 0.0091824131
Motility:Yes 0.000283535267
Optimal_temp.:- 0.005438260257
Optimal_temp.:35-37 0.0040049713
Optimal_temp.:37 0.003535530106
Oxygen_Req:Anaerobic 0.002873710102
Oxygen_Req:Facultative 0.000013820201
Oxygen_Req:Microaerophilic 0.00006461118
Pathogenic_in:Animal 0.00344862166
Pathogenic_in:Human 0.000013260213
Pathogenic_in:No 1.001e-818226
Pathogenic_in:Ruminant 0.006751133
Shape:Rod 1.390e-644347
Shape:Sphere 1.287e-81519
Shape:Spiral 1.331e-82134



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ORGANISMS ENRICHED FOR GROUP:

Total number of orgs: 6
Effective number of orgs (counting one per cluster within 468 clusters): 4

Organism list
Homologs in each organism in the list
Features enriched in organism list


Follow (ncbi) link, when present, to find the set of organism features for each organism
Org ID  Org Name    Pvalue       # genes in tgt genome found in org  # genes in group found in org  
SAGA211110 ncbi Streptococcus agalactiae NEM316 0.00303758667
SAGA208435 ncbi Streptococcus agalactiae 2603V/R 0.00311218697
SAGA205921 ncbi Streptococcus agalactiae A909 0.00313748707
CDES477974 ncbi Candidatus Desulforudis audaxviator MP104C 0.00630959617
ZMOB264203 ncbi Zymomonas mobilis mobilis ZM4 0.009071410127
SEPI176280 ncbi Staphylococcus epidermidis ATCC 12228 0.009990010267


Names of the homologs of the genes in the group in each of these orgs
  EG10784   EG10783   EG10782   EG10735   EG10734   EG10733   EG10728   
SAGA211110 GBS1952GBS1950GBS1951GBS1022GBS1027GBS0742GBS1948
SAGA208435 SAG_1965SAG_1963SAG_1964SAG_0987SAG_0992SAG_0720SAG_1961
SAGA205921 SAK_1926SAK_1924SAK_1925SAK_1082SAK_1087SAK_0846SAK_1922
CDES477974 DAUD_1959DAUD_1416DAUD_1958DAUD_1415DAUD_1956DAUD_1418DAUD_1419
ZMOB264203 ZMO1048ZMO1050ZMO1049ZMO1163ZMO1047ZMO1162ZMO1164
SEPI176280 SE_1069SE_1067SE_1068SE_1066SE_1070SE_1368SE_1176


Organism features enriched in list (features available for 6 out of the 6 orgs in the list)
Feature    Pvalue       Num occurrences in list  Total num occurrences  
Disease:Septicemia 0.000523224
Disease:and_meningitis 0.000088422
Disease:pneumonia 0.0054430212
Genome_Size_Range5:2-4 0.00141456197
Genome_Size_Range9:2-3 0.00006876120
Gram_Stain:Gram_Pos 0.00482005150
Motility:No 0.00497365151
Shape:Coccus 0.0041220482



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ORGANISMS DEPLETED FOR GROUP:




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PHYLOGENETIC PROFILE SIMILARITY WITH KNOWN PATHWAYS:

Pathways or complexes with absolute value of Pearson coefficient with respect to candidate larger than 0.4 are listed below
The candidate is assumed to exist in orgs listed in section List of organisms containing most genes from the group


Pathway or complex  # Orgs containing it  # of those orgs also containing candidate  Pearson Coeff  



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PAIRWISE GENOME CONTEXT SCORE MATRIX:

  EG10783   EG10782   EG10735   EG10734   EG10733   EG10728   
EG107840.9999550.9999920.9998350.9999620.9993750.999446
EG107830.9999720.999980.9998280.9995930.999697
EG107820.9998520.999930.9993030.99928
EG107350.9996370.9996490.999762
EG107340.9991490.999025
EG107330.999917
EG10728



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PAIRWISE BLAST SCORES:

  EG10784   EG10783   EG10782   EG10735   EG10734   EG10733   EG10728   
EG107840.0f0------
EG10783-0.0f0-----
EG10782--0.0f0----
EG10735---0.0f0---
EG10734----0.0f0--
EG10733-----0.0f0-
EG10728------0.0f0



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PATHWAYS OR PROTEIN COMPLEX MATCHES IN TARGET ORG:

For each case, all genes involved in the pathway or complex are listed. For each gene we list: a tag indicating whether the gene is part of the candidate list or not, the average and the minimum scores of the gene to the candidate list, the gene name, and its product names.

- ABC-27-CPLX (phosphate ABC transporter) (degree of match pw to cand: 1.000, degree of match cand to pw: 0.571, average score: 1.000)
  Genes in pathway or complex:
   *in cand* 0.9996 0.9990 EG10734 (pstS) PSTS-MONOMER (PstS)
   *in cand* 0.9998 0.9994 EG10784 (pstC) PSTC-MONOMER (PstC)
   *in cand* 0.9998 0.9993 EG10782 (pstA) PSTA-MONOMER (PstA)
   *in cand* 0.9999 0.9996 EG10783 (pstB) PSTB-MONOMER (PstB)
  Genes in candidate but not in this pathway or complex:
   *in cand* 0.9996 0.9990 EG10728 (phoB) PHOSPHO-PHOB (PhoB-Phosphorylated transcriptional dual regulator)
   *in cand* 0.9996 0.9991 EG10733 (phoR) PHOSPHO-PHOR (PhoR sensory histidine kinase - phosphorylated)
   *in cand* 0.9998 0.9996 EG10735 (phoU) EG10735-MONOMER (PhoU phosphate transport system protein)



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GENOME CONTEXT INFORMATION:

Each row corresponds to a replicon in an organism, each column to a gene in the candidate. The second column indicates whether the organims was included in the list used to compute the genome context scores or not. Some organisms are not included because they are phylogenetically too similar to others already in the list.
The number in the matrix indicate the position of the homolog of the gene in the replicon. All numbers are relative to the smaller one, which is assigned a position of zero. Two columns with the same number indicate that the two genes matched the same gene in that organism.

Genome browser links for gene clusters

The links below opens a genome browser BioCyc page for each cluster of genes in the target genome. These pages shows the central gene of the cluster in the target genome and its best homolog in the reference genomes, for the genomes that contain homologs for at least 75% of the genes in the group. Only one genome per phylogenetic cluster of organisms is shown, to keep the list smaller.

EG10734 EG10735 EG10782 EG10783 EG10784 (centered at EG10782)
EG10728 EG10733 (centered at EG10733)


ORG:REPLICON:CIRC?\GENE  IN REF LIST  EG10784   EG10783   EG10782   EG10735   EG10734   EG10733   EG10728   
382/623385/623373/623380/623308/623349/623337/623
AAEO224324:0:Tyes7931017940792--
AAUR290340:2:Tyes132-0-1352
AAVE397945:0:Tyes1324065
ABAC204669:0:Tyes3120418-
ABAU360910:0:Tyes1321308021582157
ABOR393595:0:Tyes2560--2557-10
ABUT367737:0:Tyes02-----
ACAU438753:0:Tyes4231560
ACEL351607:0:Tyes1-2-0-1670
ACRY349163:8:Tyes3871429388143038601431
ADEH290397:0:Tyes31-0467
AEHR187272:0:Tyes-29-30-10
AFER243159:0:Tyes3120456
AFUL224325:0:Tyes-10----
AHYD196024:0:Tyes-1523-1522-10
ALAI441768:0:Tyes-1-0---
AMAR329726:9:Tyes3272-03997--1285
AMET293826:0:Tyes17671765-1764-01
ANAE240017:0:Tyes259-258-260-0
AORE350688:0:Tyes18488474011242585
APER272557:0:Tyes2-3-0--
APLE416269:0:Tyes423-501
APLE434271:0:Tno423-501
ASAL382245:5:Tyes-266-267-10
ASP1667:3:Tyes132-05291256
ASP232721:2:Tyes5342601
ASP62928:0:Tyes1261126312622714126010
ASP62977:0:Tyes879881-0-30403039
ASP76114:2:Tyes22032205-0-11441143
AVAR240292:3:Tyes204632-0-897
BABO262698:1:Tno---1725-01726
BAFZ390236:2:Fyes02-----
BAMB339670:3:Tno1324065
BAMB398577:3:Tno1324065
BAMY326423:0:Tyes-200--20316120
BANT260799:0:Tno-120-3141166
BANT261594:2:Tno-120-3171146
BANT568206:2:Tyes-63163263009581821
BANT592021:2:Tno-120-3271194
BBAC264462:0:Tyes-5915900---
BBAC360095:0:Tyes31-0---
BBRO257310:0:Tyes1321960030413040
BBUR224326:21:Fno-0-----
BCAN483179:1:Tno---1818-01819
BCEN331271:2:Tno1324065
BCEN331272:3:Tyes1324065
BCER226900:1:Tyes-120-3181171
BCER288681:0:Tno-120-3131162
BCER315749:1:Tyes31-0-269964
BCER405917:1:Tyes3120-3581218
BCER572264:1:Tno3120-3151197
BCLA66692:0:Tyes-763764761-0-
BFRA272559:1:Tyes201----
BFRA295405:0:Tno201----
BGAR290434:2:Fyes-0-----
BHAL272558:0:Tyes3120-168-
BHEN283166:0:Tyes0213---
BHER314723:0:Fyes02-----
BJAP224911:0:Fyes2435106
BLIC279010:0:Tyes-207---5850
BLON206672:0:Tyes1-0-2--
BMAL243160:1:Tno1324065
BMAL320388:1:Tno1324065
BMAL320389:1:Tyes1324065
BMEL224914:1:Tno---366-0365
BMEL359391:1:Tno---1669-01670
BOVI236:1:Tyes---1564-01565
BPAR257311:0:Tno365367366036422092208
BPER257313:0:Tyes814812813195581501
BPET94624:0:Tyes3085308330841492308601
BPSE272560:1:Tyes1324065
BPSE320372:1:Tno1324065
BPSE320373:1:Tno1324065
BPUM315750:0:Tyes-180---01
BQUI283165:0:Tyes0--3---
BSP36773:0:Tyes----0--
BSP36773:2:Tyes0213-54
BSP376:0:Tyes1324048545
BSUB:0:Tyes-190--19301
BSUI204722:1:Tyes---1783-01784
BSUI470137:1:Tno---1609-01610
BTHA271848:1:Tno5342601
BTHE226186:0:Tyes134113391340-0--
BTHU281309:1:Tno3120-3061129
BTHU412694:1:Tno3120-2961078
BTRI382640:1:Tyes0-13---
BTUR314724:0:Fyes02-----
BVIE269482:7:Tyes1324065
BWEI315730:4:Tyes3120-2971148
BXEN266265:1:Tyes----0--
CACE272562:1:Tyes-7-8401535
CAULO:0:Tyes-0-1--2
CBEI290402:0:Tyes-1039-10411036-0
CBOT36826:1:Tno-120456
CBOT441770:0:Tyes-120456
CBOT441771:0:Tno-120456
CBOT441772:1:Tno-120456
CBOT498213:1:Tno-120-56
CBOT508765:1:Tyes35462-0
CBOT515621:2:Tyes3120456
CBOT536232:0:Tno-120456
CBUR227377:1:Tyes-----01
CBUR360115:1:Tno-----01
CBUR434922:2:Tno-----10
CCHL340177:0:Tyes-63---0-
CDES477974:0:Tyes5421541053923
CDIF272563:1:Tyes630628629627635-0
CDIP257309:0:Tyes1219-1218-1220-0
CEFF196164:0:Fyes174517431744-1746-0
CFET360106:0:Tyes1-2-0--
CGLU196627:0:Tyes1-0-2--
CHOM360107:1:Tyes1-0-2--
CHUT269798:0:Tyes-772771773-0-
CHYD246194:0:Tyes01294-1228112291230
CJAP155077:0:Tyes-2570-2569-01
CJEI306537:0:Tyes1-2-0-1322
CJEJ192222:0:Tyes0------
CJEJ195099:0:Tno0------
CJEJ354242:2:Tyes0------
CJEJ360109:0:Tyes0------
CJEJ407148:0:Tno0------
CKLU431943:1:Tyes1173117511741176-11710
CKOR374847:0:Tyes99-98-0--
CMET456442:0:Tyes5192130--
CMIC31964:2:Tyes205902058-2060-103
CMIC443906:2:Tyes149414961495-1493-0
CNOV386415:0:Tyes------0
CPEL335992:0:Tyes-2-1-60
CPER195102:1:Tyes1324011221923
CPER195103:0:Tno1324013742106
CPER289380:3:Tyes1324011121818
CPHY357809:0:Tyes11153115411520--
CPSY167879:0:Tyes-2358-2357-10
CSAL290398:0:Tyes02-1813-18031802
CSP501479:8:Fyes2435-06
CSP78:2:Tyes4--1--0
CTEP194439:0:Tyes236-237--0-
CTET212717:0:Tyes354--10
CVIO243365:0:Tyes37937737872038010
DARO159087:0:Tyes-10250543
DDES207559:0:Tyes01351-1350-27671352
DETH243164:0:Tyes4657--0
DGEO319795:1:Tyes562-56341561-0
DHAF138119:0:Tyes1550154815491553-0316
DNOD246195:0:Tyes346348-234-076
DOLE96561:0:Tyes0213-54
DPSY177439:2:Tyes30-4-6-
DRAD243230:2:Tyes1-2-0--
DRAD243230:3:Tyes---0---
DRED349161:0:Tyes1394213933139510
DSHI398580:5:Tyes24-5-06
DSP216389:0:Tyes3120---
DSP255470:0:Tno0213---
DVUL882:1:Tyes13851-21574-0
ECAN269484:0:Tyes--0----
ECAR218491:0:Tyes3419341734183416342010
ECHA205920:0:Tyes--0----
ECOL199310:0:Tno4067406440664063406810
ECOL316407:0:Tno3144314631453147314310
ECOL331111:6:Tno3667366536663664366810
ECOL362663:0:Tno3462346034613459346310
ECOL364106:1:Tno3848384638473845384910
ECOL405955:2:Tyes3406340434053403340710
ECOL409438:6:Tyes3657365536563654365810
ECOL413997:0:Tno3277327532763274327810
ECOL439855:4:Tno3554355235533551355510
ECOL469008:0:Tno1067106910681070106601
ECOL481805:0:Tno1056105810571059105501
ECOL585034:0:Tno3469346734683466347010
ECOL585035:0:Tno3634363236333631363510
ECOL585055:0:Tno3743374137423740374410
ECOL585056:2:Tno3820381838193817382110
ECOL585057:0:Tno4050404840494047405101
ECOL585397:0:Tno3891388938903888389210
ECOL83334:0:Tno4308430643074305430910
ECOLI:0:Tno3400339833993397340110
ECOO157:0:Tno4328432643274325432910
EFAE226185:3:Tyes542-5415385430-
EFER585054:1:Tyes1379137713781376138001
ELIT314225:0:Tyes42-1-50
ERUM254945:0:Tyes--0----
ERUM302409:0:Tno--0----
ESP42895:1:Tyes3305330733063308330410
FALN326424:0:Tyes543554335434-54360-
FMAG334413:1:Tyes3120---
FNOD381764:0:Tyes-0----59
FSP106370:0:Tyes379137893790037921-
FSP1855:0:Tyes1-2-05713-
FSUC59374:0:Tyes3120---
GBET391165:0:Tyes13240-5
GFOR411154:0:Tyes-----0-
GKAU235909:1:Tyes100101002--277278
GMET269799:1:Tyes9111012810
GOXY290633:5:Tyes4231218-0
GSUL243231:0:Tyes-120-67
GTHE420246:1:Tyes186184-183-0446
GURA351605:0:Tyes9879899889909860984
GVIO251221:0:Tyes4370438-2044-4165
HARS204773:0:Tyes1324065
HAUR316274:2:Tyes-2377-0-11693053
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