CANDIDATE ID: 293

CANDIDATE ID: 293

NUMBER OF GENES: 7
AVERAGE SCORE:    9.9933157e-1 (range=[0.0,1.0])
AVERAGE MINIMUM BLAST P-VAL:    7.1428571e-1

Gene List
List of organisms containing most genes from the group
    Phylogenetic tree highlighting these organisms (opens new page)
List of organisms containing very few or no genes from the group
List of organisms enriched for group
List of organisms depleted for group
Phylogenetic profile similarity with known pathways
Pairwise genome context scores
Pairwise Blast scores
Pathway or protein complex matches in target organism
Genome context matrix
    Genes and their orthologs in genome browser BioCyc pages



GENE LIST:

- EG12878 (zapA) (b2910)
   Products of gene:
     - EG12878-MONOMER (protein that localizes to the cytokinetic ring)
     - CPLX0-7538 (protein that localizes to the cytokinetic ring)

- EG11442 (gcvT) (b2905)
   Products of gene:
     - GCVT-MONOMER (aminomethyltransferase)
       Reactions:
        H-protein-S-(aminomethyldihydrolipoyl)lysine + tetrahydrofolate  ->  H-Gcv-protein-(dihydrolipoyl)lysine + ammonia + 5,10-methylene-THF
         In pathways
         GLYCLEAV-PWY (glycine cleavage complex)
     - GCVMULTI-CPLX (glycine cleavage system)
       Reactions:
        NAD+ + glycine + tetrahydrofolate + H+  ->  ammonia + CO2 + NADH + 5,10-methylene-THF
         In pathways
         GLYCINE-SYN2-PWY (GLYCINE-SYN2-PWY)
         PWY-2201 (PWY-2201)
         PWY-3841 (PWY-3841)
         1CMET2-PWY (formylTHF biosynthesis I)
         PWY-181 (PWY-181)

- EG11333 (visC) (b2906)
   Products of gene:
     - EG11333-MONOMER (predicted oxidoreductase, FAD/NAD(P)-binding domain)

- EG11324 (ubiH) (b2907)
   Products of gene:
     - OCTAPRENYL-METHOXYPHENOL-OH-MONOMER (2-octaprenyl-6-methoxyphenol hydroxylase)
       Reactions:
        2-octaprenyl-6-methoxyphenol + oxygen + 4 H+  ->  2-octaprenyl-6-methoxy-1,4-benzoquinol + H2O
         In pathways
         ALL-CHORISMATE-PWY (superpathway of chorismate)
         PWY-5870 (PWY-5870)
         UBISYN-PWY (ubiquinol-8 biosynthesis (prokaryotic))

- EG11323 (ygfB) (b2909)
   Products of gene:
     - EG11323-MONOMER (predicted protein)

- EG11158 (ygfA) (b2912)
   Products of gene:
     - EG11158-MONOMER (predicted ligase)

- EG10697 (pepP) (b2908)
   Products of gene:
     - EG10697-MONOMER (PepP)
     - CPLX0-3081 (proline aminopeptidase P II)
       Reactions:
        EC# 3.4.11.9



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ORGANISMS CONTAINING AT LEAST 6 GENES FROM THE GROUP:

Total number of orgs: 115
Effective number of orgs (counting one per cluster within 468 clusters): 66

Organism list
Homologs in each organism in the list
Features enriched in organism list


Follow (ncbi) link, when present, to find the set of organism features for each organism
Org ID  Org Name  # genes in group found in org  
YPSE349747 ncbi Yersinia pseudotuberculosis IP 317587
YPSE273123 ncbi Yersinia pseudotuberculosis IP 329537
YPES386656 ncbi Yersinia pestis Pestoides F7
YPES377628 ncbi Yersinia pestis Nepal5167
YPES360102 ncbi Yersinia pestis Antiqua7
YPES349746 ncbi Yersinia pestis Angola7
YPES214092 ncbi Yersinia pestis CO927
YPES187410 ncbi Yersinia pestis KIM 107
YENT393305 ncbi Yersinia enterocolitica enterocolitica 80817
XORY360094 ncbi Xanthomonas oryzae pv. oryzae PXO99A7
XORY342109 ncbi Xanthomonas oryzae pv. oryzae MAFF 3110187
XORY291331 ncbi Xanthomonas oryzae pv. oryzae KACC103317
XFAS405440 ncbi Xylella fastidiosa M127
XFAS183190 ncbi Xylella fastidiosa Temecula17
XFAS160492 ncbi Xylella fastidiosa 9a5c7
XCAM487884 Xanthomonas campestris pv. paulliniae7
XCAM316273 ncbi Xanthomonas campestris pv. vesicatoria str. 85-107
XCAM314565 ncbi Xanthomonas campestris pv. campestris str. 80047
XCAM190485 ncbi Xanthomonas campestris pv. campestris str. ATCC 339137
XAXO190486 ncbi Xanthomonas axonopodis pv. citri str. 3067
VVUL216895 ncbi Vibrio vulnificus CMCP66
VVUL196600 ncbi Vibrio vulnificus YJ0166
VPAR223926 ncbi Vibrio parahaemolyticus RIMD 22106336
VFIS312309 ncbi Vibrio fischeri ES1146
VCHO345073 ncbi Vibrio cholerae O3956
TTUR377629 ncbi Teredinibacter turnerae T79017
TDEN292415 ncbi Thiobacillus denitrificans ATCC 252596
STYP99287 ncbi Salmonella enterica enterica serovar Typhimurium str. LT27
SSP94122 ncbi Shewanella sp. ANA-37
SSON300269 ncbi Shigella sonnei Ss0467
SSED425104 ncbi Shewanella sediminis HAW-EB37
SPRO399741 ncbi Serratia proteamaculans 5687
SPEA398579 ncbi Shewanella pealeana ATCC 7003457
SONE211586 ncbi Shewanella oneidensis MR-17
SLOI323850 ncbi Shewanella loihica PV-47
SHIGELLA ncbi Shigella flexneri 2a str. 2457T7
SHAL458817 ncbi Shewanella halifaxensis HAW-EB47
SGLO343509 ncbi Sodalis glossinidius morsitans7
SFLE373384 ncbi Shigella flexneri 5 str. 84017
SFLE198214 ncbi Shigella flexneri 2a str. 3017
SENT454169 ncbi Salmonella enterica enterica serovar Heidelberg str. SL4767
SENT321314 ncbi Salmonella enterica enterica serovar Choleraesuis str. SC-B677
SENT295319 ncbi Salmonella enterica enterica serovar Paratyphi A str. ATCC 91507
SENT220341 ncbi Salmonella enterica enterica serovar Typhi str. CT187
SENT209261 ncbi Salmonella enterica enterica serovar Typhi str. Ty27
SDYS300267 ncbi Shigella dysenteriae Sd1977
SDEN318161 ncbi Shewanella denitrificans OS2176
SDEG203122 ncbi Saccharophagus degradans 2-406
SBOY300268 ncbi Shigella boydii Sb2277
SBAL402882 ncbi Shewanella baltica OS1857
SBAL399599 ncbi Shewanella baltica OS1957
PSYR223283 ncbi Pseudomonas syringae pv. tomato str. DC30006
PSYR205918 ncbi Pseudomonas syringae pv. syringae B728a6
PSTU379731 ncbi Pseudomonas stutzeri A15016
PPUT76869 ncbi Pseudomonas putida GB-16
PPUT351746 ncbi Pseudomonas putida F17
PPUT160488 ncbi Pseudomonas putida KT24407
PMUL272843 ncbi Pasteurella multocida multocida Pm706
PMEN399739 ncbi Pseudomonas mendocina ymp7
PLUM243265 ncbi Photorhabdus luminescens laumondii TTO17
PING357804 ncbi Psychromonas ingrahamii 377
PHAL326442 ncbi Pseudoalteromonas haloplanktis TAC1257
PFLU220664 ncbi Pseudomonas fluorescens Pf-57
PFLU216595 ncbi Pseudomonas fluorescens SBW257
PFLU205922 ncbi Pseudomonas fluorescens Pf0-16
PENT384676 ncbi Pseudomonas entomophila L486
PATL342610 ncbi Pseudoalteromonas atlantica T6c6
PAER208964 ncbi Pseudomonas aeruginosa PAO17
PAER208963 ncbi Pseudomonas aeruginosa UCBPP-PA147
NOCE323261 ncbi Nitrosococcus oceani ATCC 197076
MSP400668 ncbi Marinomonas sp. MWYL17
MCAP243233 ncbi Methylococcus capsulatus Bath7
MAQU351348 ncbi Marinobacter aquaeolei VT86
LPNE400673 ncbi Legionella pneumophila Corby6
LPNE297246 ncbi Legionella pneumophila Paris6
LPNE297245 ncbi Legionella pneumophila Lens6
LPNE272624 ncbi Legionella pneumophila pneumophila Philadelphia 16
KPNE272620 ncbi Klebsiella pneumoniae pneumoniae MGH 785787
ILOI283942 ncbi Idiomarina loihiensis L2TR7
HSOM228400 ncbi Haemophilus somnus 23366
HSOM205914 ncbi Haemophilus somnus 129PT6
HHAL349124 ncbi Halorhodospira halophila SL17
HCHE349521 ncbi Hahella chejuensis KCTC 23967
ESP42895 Enterobacter sp.7
EFER585054 ncbi Escherichia fergusonii ATCC 354697
ECOO157 ncbi Escherichia coli O157:H7 EDL9337
ECOL83334 Escherichia coli O157:H77
ECOL585397 ncbi Escherichia coli ED1a7
ECOL585057 ncbi Escherichia coli IAI397
ECOL585056 ncbi Escherichia coli UMN0267
ECOL585055 ncbi Escherichia coli 559897
ECOL585035 ncbi Escherichia coli S887
ECOL585034 ncbi Escherichia coli IAI17
ECOL481805 ncbi Escherichia coli ATCC 87397
ECOL469008 ncbi Escherichia coli BL21(DE3)7
ECOL439855 ncbi Escherichia coli SMS-3-57
ECOL413997 ncbi Escherichia coli B str. REL6067
ECOL409438 ncbi Escherichia coli SE117
ECOL405955 ncbi Escherichia coli APEC O17
ECOL364106 ncbi Escherichia coli UTI897
ECOL362663 ncbi Escherichia coli 5367
ECOL331111 ncbi Escherichia coli E24377A7
ECOL316407 ncbi Escherichia coli K-12 substr. W31107
ECOL199310 ncbi Escherichia coli CFT0737
ECAR218491 ncbi Pectobacterium atrosepticum SCRI10437
CVIO243365 ncbi Chromobacterium violaceum ATCC 124726
CSAL290398 ncbi Chromohalobacter salexigens DSM 30436
CPSY167879 ncbi Colwellia psychrerythraea 34H7
CJAP155077 Cellvibrio japonicus7
ASAL382245 ncbi Aeromonas salmonicida salmonicida A4496
APLE434271 ncbi Actinobacillus pleuropneumoniae serovar 3 str. JL036
APLE416269 ncbi Actinobacillus pleuropneumoniae L206
AHYD196024 Aeromonas hydrophila dhakensis7
AEHR187272 ncbi Alkalilimnicola ehrlichii MLHE-17
ABOR393595 ncbi Alcanivorax borkumensis SK26


Names of the homologs of the genes in the group in each of these orgs
  EG12878   EG11442   EG11333   EG11324   EG11323   EG11158   EG10697   
YPSE349747 YPSIP31758_0858YPSIP31758_0863YPSIP31758_0862YPSIP31758_0861YPSIP31758_0859YPSIP31758_0857YPSIP31758_0860
YPSE273123 YPTB3187YPTB3182YPTB3183YPTB3184YPTB3186YPTB3188YPTB3185
YPES386656 YPDSF_0602YPDSF_0607YPDSF_0606YPDSF_0605YPDSF_0603YPDSF_0601YPDSF_0604
YPES377628 YPN_3111YPN_3106YPN_3107YPN_3108YPN_3110YPN_3112YPN_3109
YPES360102 YPA_0355YPA_0360YPA_0359YPA_0358YPA_0356YPA_0354YPA_0357
YPES349746 YPANGOLA_A3825YPANGOLA_A3830YPANGOLA_A3829YPANGOLA_A3828YPANGOLA_A3826YPANGOLA_A3824YPANGOLA_A3827
YPES214092 YPO0912YPO0907YPO0908YPO0909YPO0911YPO0913YPO0910
YPES187410 Y3299Y3294Y3295Y3296Y3298Y3300Y3297
YENT393305 YE3398YE3393YE3394YE3395YE3397YE3399YE3396
XORY360094 XOOORF_4217XOOORF_3210XOOORF_1164XOOORF_1163XOOORF_4215XOOORF_4219XOOORF_4214
XORY342109 XOO1026XOO1697XOO3530XOO3531XOO1028XOO1025XOO1029
XORY291331 XOO1130XOO1794XOO3740XOO3741XOO1132XOO1129XOO1133
XFAS405440 XFASM12_0963XFASM12_0155XFASM12_2015XFASM12_2014XFASM12_0965XFASM12_0962XFASM12_0966
XFAS183190 PD_0800PD_0149PD_1838PD_1837PD_0802PD_0799PD_0803
XFAS160492 XF2012XF0183XF0834XF0835XF2010XF2013XF2009
XCAM487884 XCC-B100_0922XCC-B100_1276XCC-B100_3552XCC-B100_3553XCC-B100_0924XCC-B100_0921XCC-B100_0925
XCAM316273 XCAORF_3603XCAORF_3256XCAORF_0979XCAORF_0978XCAORF_3601XCAORF_3604XCAORF_3600
XCAM314565 XC_0902XC_1232XC_3432XC_3433XC_0904XC_0901XC_0905
XCAM190485 XCC3262XCC2877XCC0799XCC0798XCC3260XCC3263XCC3259
XAXO190486 XAC3408XAC3061XAC0873XAC0872XAC3406XAC3409XAC3405
VVUL216895 VV1_1549VV2_0190VV1_1553VV1_1552VV1_1551VV1_1548
VVUL196600 VV2848VVA0696VV2845VV2846VV2847VV2849
VPAR223926 VP2590VPA0805VP2586VP2587VP2588VP2591
VFIS312309 VF2103VFA0700VF2100VF2101VF2102VF2104
VCHO345073 VC0395_A2054VC0395_0949VC0395_A2051VC0395_A2052VC0395_A2053VC0395_A2055
TTUR377629 TERTU_0398TERTU_0356TERTU_0404TERTU_0403TERTU_0401TERTU_0397TERTU_0402
TDEN292415 TBD_2723TBD_0178TBD_2332TBD_2333TBD_2724TBD_2334
STYP99287 STM3060STM3055STM3056STM3057STM3059STM3061STM3058
SSP94122 SHEWANA3_3505SHEWANA3_3501SHEWANA3_3502SHEWANA3_3503SHEWANA3_3504SHEWANA3_3506SHEWANA3_0025
SSON300269 SSO_3063SSO_3058SSO_3059SSO_3060SSO_3062SSO_3064SSO_3061
SSED425104 SSED_3679SSED_3675SSED_3676SSED_3677SSED_3678SSED_3686SSED_1782
SPRO399741 SPRO_3921SPRO_3916SPRO_3917SPRO_3918SPRO_3920SPRO_3922SPRO_3919
SPEA398579 SPEA_3308SPEA_3303SPEA_3304SPEA_3305SPEA_3306SPEA_3311SPEA_1711
SONE211586 SO_0775SO_0779SO_0778SO_0777SO_0776SO_0774SO_0022
SLOI323850 SHEW_3068SHEW_3064SHEW_3065SHEW_3066SHEW_3067SHEW_3069SHEW_2358
SHIGELLA YGFEGCVTVISCUBIHYGFBYGFAPEPP
SHAL458817 SHAL_3379SHAL_3375SHAL_3376SHAL_3377SHAL_3378SHAL_3386SHAL_2548
SGLO343509 SG2007SG2002SG2003SG2004SG2006SG2008SG2005
SFLE373384 SFV_2958SFV_2953SFV_2954SFV_2955SFV_2957SFV_2959SFV_2956
SFLE198214 AAN44380.1AAN44375.1AAN44376.1AAN44377.1AAN44379.1AAN44381.1AAN44378.1
SENT454169 SEHA_C3293SEHA_C3287SEHA_C3289SEHA_C3290SEHA_C3292SEHA_C3295SEHA_C3291
SENT321314 SCH_3001SCH_2996SCH_2997SCH_2998SCH_3000SCH_3002SCH_2999
SENT295319 SPA2928SPA2923SPA2924SPA2925SPA2927SPA2931SPA2926
SENT220341 STY3216STY3211STY3212STY3213STY3215STY3217STY3214
SENT209261 T2978T2973T2974T2975T2977T2979T2976
SDYS300267 SDY_3171SDY_3176SDY_3175SDY_3174SDY_3172SDY_3170SDY_3173
SDEN318161 SDEN_0829SDEN_0833SDEN_0832SDEN_0831SDEN_0830SDEN_0828
SDEG203122 SDE_3516SDE_0338SDE_3512SDE_3512SDE_3517SDE_3513
SBOY300268 SBO_3082SBO_3087SBO_3086SBO_3085SBO_3083SBO_3081SBO_3084
SBAL402882 SHEW185_3681SHEW185_3677SHEW185_3678SHEW185_3679SHEW185_3680SHEW185_3682SHEW185_0017
SBAL399599 SBAL195_3805SBAL195_3801SBAL195_3802SBAL195_3803SBAL195_3804SBAL195_3806SBAL195_0021
PSYR223283 PSPTO_0316PSPTO_5221PSPTO_5222PSPTO_5224PSPTO_5227PSPTO_5223
PSYR205918 PSYR_0246PSYR_0323PSYR_0322PSYR_0320PSYR_0317PSYR_0321
PSTU379731 PST_4064PST_4067PST_4069PST_4071PST_4073PST_4070
PPUT76869 PPUTGB1_5263PPUTGB1_5254PPUTGB1_5257PPUTGB1_5259PPUTGB1_5264PPUTGB1_5260
PPUT351746 PPUT_5110PPUT_5101PPUT_5104PPUT_5106PPUT_5108PPUT_5111PPUT_5107
PPUT160488 PP_5202PP_5194PP_5197PP_5199PP_5201PP_5203PP_5200
PMUL272843 PM1722PM1726PM1725PM1723PM1721PM1724
PMEN399739 PMEN_0322PMEN_0331PMEN_0327PMEN_0326PMEN_0324PMEN_0321PMEN_0325
PLUM243265 PLU3603PLU3598PLU3599PLU3600PLU3602PLU3604PLU3601
PING357804 PING_0604PING_2726PING_0609PING_0607PING_0605PING_0602PING_0606
PHAL326442 PSHAA0295PSHAA2475PSHAA0564PSHAA0563PSHAA0561PSHAA0668PSHAA0562
PFLU220664 PFL_5970PFL_5962PFL_5965PFL_5967PFL_5969PFL_5971PFL_5968
PFLU216595 PFLU5883PFLU5874PFLU5877PFLU5879PFLU5881PFLU5885PFLU5880
PFLU205922 PFL_5437PFL_5428PFL_5431PFL_5433PFL_5438PFL_5434
PENT384676 PSEEN5318PSEEN5309PSEEN5312PSEEN5314PSEEN5319PSEEN5315
PATL342610 PATL_3592PATL_3501PATL_3501PATL_3503PATL_3507PATL_3502
PAER208964 PA5227PA5215PA5221PA5223PA5225PA5228PA5224
PAER208963 PA14_69030PA14_68870PA14_68955PA14_68980PA14_69010PA14_69040PA14_69000
NOCE323261 NOC_2576NOC_0500NOC_2581NOC_2580NOC_2578NOC_2579
MSP400668 MMWYL1_1130MMWYL1_2282MMWYL1_3756MMWYL1_3756MMWYL1_3758MMWYL1_1129MMWYL1_3757
MCAP243233 MCA_2772MCA_0350MCA_1754MCA_2769MCA_2771MCA_2773MCA_2770
MAQU351348 MAQU_3434MAQU_3425MAQU_3426MAQU_3428MAQU_3435MAQU_3427
LPNE400673 LPC_0138LPC_0101LPC_0100LPC_0098LPC_2709LPC_0099
LPNE297246 LPP0132LPP0093LPP0092LPP0090LPP0643LPP0091
LPNE297245 LPL0117LPL0081LPL0080LPL0078LPL0627LPL0079
LPNE272624 LPG0118LPG0079LPG0078LPG0076LPG0593LPG0077
KPNE272620 GKPORF_B2700GKPORF_B2695GKPORF_B2696GKPORF_B2697GKPORF_B2699GKPORF_B2701GKPORF_B2698
ILOI283942 IL2100IL2094IL2096IL2097IL2099IL2102IL2098
HSOM228400 HSM_1095HSM_1091HSM_1092HSM_1094HSM_1096HSM_1093
HSOM205914 HS_0684HS_0680HS_0681HS_0683HS_0685HS_0682
HHAL349124 HHAL_1182HHAL_1190HHAL_2225HHAL_1186HHAL_1184HHAL_1181HHAL_1185
HCHE349521 HCH_01065HCH_03858HCH_00760HCH_01071HCH_01069HCH_01064HCH_01070
ESP42895 ENT638_3329ENT638_3324ENT638_3325ENT638_3326ENT638_3328ENT638_3331ENT638_3327
EFER585054 EFER_2847EFER_2841EFER_2843EFER_2844EFER_2846EFER_2849EFER_2845
ECOO157 YGFEGCVTVISCUBIHYGFBYGFAPEPP
ECOL83334 ECS3781ECS3776ECS3777ECS3778ECS3780ECS3782ECS3779
ECOL585397 ECED1_3369ECED1_3363ECED1_3365ECED1_3366ECED1_3368ECED1_3370ECED1_3367
ECOL585057 ECIAI39_3326ECIAI39_3320ECIAI39_3322ECIAI39_3323ECIAI39_3325ECIAI39_3327ECIAI39_3324
ECOL585056 ECUMN_3252ECUMN_3246ECUMN_3248ECUMN_3249ECUMN_3251ECUMN_3253ECUMN_3250
ECOL585055 EC55989_3198EC55989_3192EC55989_3194EC55989_3195EC55989_3197EC55989_3199EC55989_3196
ECOL585035 ECS88_3190ECS88_3184ECS88_3186ECS88_3187ECS88_3189ECS88_3191ECS88_3188
ECOL585034 ECIAI1_3029ECIAI1_3024ECIAI1_3025ECIAI1_3026ECIAI1_3028ECIAI1_3031ECIAI1_3027
ECOL481805 ECOLC_0799ECOLC_0804ECOLC_0803ECOLC_0802ECOLC_0800ECOLC_0798ECOLC_0801
ECOL469008 ECBD_0827ECBD_0832ECBD_0831ECBD_0830ECBD_0828ECBD_0826ECBD_0829
ECOL439855 ECSMS35_3044ECSMS35_3037ECSMS35_3040ECSMS35_3041ECSMS35_3043ECSMS35_3045ECSMS35_3042
ECOL413997 ECB_02742ECB_02737ECB_02738ECB_02739ECB_02741ECB_02743ECB_02740
ECOL409438 ECSE_3173ECSE_3168ECSE_3169ECSE_3170ECSE_3172ECSE_3174ECSE_3171
ECOL405955 APECO1_3618APECO1_3623APECO1_3622APECO1_3621APECO1_3619APECO1_3617APECO1_3620
ECOL364106 UTI89_C3297UTI89_C3290UTI89_C3292UTI89_C3293UTI89_C3295UTI89_C3298UTI89_C3294
ECOL362663 ECP_2903ECP_2898ECP_2899ECP_2900ECP_2902ECP_2904ECP_2901
ECOL331111 ECE24377A_3238ECE24377A_3232ECE24377A_3234ECE24377A_3235ECE24377A_3237ECE24377A_3239ECE24377A_3236
ECOL316407 ECK2905:JW2878:B2910ECK2900:JW2873:B2905ECK2901:JW2874:B2906ECK2902:JW2875:B2907ECK2904:JW5473:B2909ECK2907:JW2879:B2912ECK2903:JW2876:B2908
ECOL199310 C3492C3485C3488C3489C3491C3493C3490
ECAR218491 ECA0461ECA0743ECA0457ECA0458ECA0460ECA0462ECA0459
CVIO243365 CV_0498CV_3431CV_1132CV_3121CV_0499CV_3122
CSAL290398 CSAL_0022CSAL_1815CSAL_0026CSAL_0025CSAL_0021CSAL_0024
CPSY167879 CPS_1268CPS_1274CPS_1273CPS_1272CPS_1270CPS_3648CPS_1271
CJAP155077 CJA_0291CJA_0421CJA_0295CJA_0295CJA_0293CJA_0289CJA_0294
ASAL382245 ASA_2637ASA_2633ASA_2634ASA_2635ASA_2636ASA_1643
APLE434271 APJL_0111APJL_0349APJL_0345APJL_0112APJL_0110APJL_0653
APLE416269 APL_0110APL_0333APL_0329APL_0111APL_0109APL_0663
AHYD196024 AHA_1714AHA_1718AHA_1717AHA_1716AHA_1715AHA_2727AHA_0141
AEHR187272 MLG_2539MLG_2576MLG_2544MLG_2543MLG_2541MLG_2538MLG_2542
ABOR393595 ABO_2594ABO_2598ABO_2599ABO_2601ABO_2604ABO_2600


Organism features enriched in list (features available for 110 out of the 115 orgs in the list)
Feature    Pvalue       Num occurrences in list  Total num occurrences  
Arrangment:Chains 0.0002263692
Arrangment:Pairs 0.001905132112
Arrangment:Singles 0.000528069286
Disease:Bubonic_plague 0.000040366
Disease:Dysentery 0.000040366
Disease:Gastroenteritis 6.515e-61013
Disease:Legionnaire's_disease 0.001211844
Disease:Rice_bacterial_blight_disease 0.006568633
Endospores:No 0.000157324211
GC_Content_Range4:0-40 9.995e-158213
GC_Content_Range4:40-60 1.261e-1478224
GC_Content_Range7:30-40 1.747e-98166
GC_Content_Range7:40-50 0.003919232117
GC_Content_Range7:50-60 5.388e-1146107
Genome_Size_Range5:2-4 0.000088921197
Genome_Size_Range5:4-6 2.044e-2279184
Genome_Size_Range9:2-3 0.000672011120
Genome_Size_Range9:4-5 3.451e-73796
Genome_Size_Range9:5-6 7.499e-124288
Gram_Stain:Gram_Neg 2.868e-23105333
Habitat:Specialized 0.0034449353
Motility:No 1.490e-123151
Motility:Yes 4.077e-1384267
Oxygen_Req:Anaerobic 1.545e-91102
Oxygen_Req:Facultative 2.501e-1270201
Pathogenic_in:No 0.000015924226
Pathogenic_in:Plant 0.00004651015
Pathogenic_in:Rice 0.006568633
Shape:Coccus 1.873e-7182
Shape:Rod 1.024e-15100347
Shape:Spiral 0.0055006134
Temp._range:Mesophilic 0.005773698473
Temp._range:Thermophilic 0.0045382135



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ORGANISMS CONTAINING AT MOST 1 GENES FROM THE GROUP:

Total number of orgs: 195
Effective number of orgs (counting one per cluster within 468 clusters): 156

Organism list
Homologs in each organism in the list
Features enriched in organism list


Follow (ncbi) link, when present, to find the set of organism features for each organism
Org ID  Org Name  # genes in group found in org  
WSUC273121 ncbi Wolinella succinogenes DSM 17400
UURE95667 Ureaplasma urealyticum serovar 130
UURE95664 Ureaplasma urealyticum serovar 100
UPAR505682 ncbi Ureaplasma parvum serovar 3 str. ATCC 278150
UMET351160 ncbi uncultured methanogenic archaeon RC-I0
TSP28240 Thermotoga sp.1
TROS309801 ncbi Thermomicrobium roseum DSM 51591
TPET390874 ncbi Thermotoga petrophila RKU-11
TPEN368408 ncbi Thermofilum pendens Hrk 50
TPAL243276 ncbi Treponema pallidum pallidum Nichols0
TMAR243274 ncbi Thermotoga maritima MSB81
TLET416591 ncbi Thermotoga lettingae TMO1
TKOD69014 ncbi Thermococcus kodakarensis KOD11
TDEN326298 ncbi Sulfurimonas denitrificans DSM 12511
TDEN243275 ncbi Treponema denticola ATCC 354051
TACI273075 ncbi Thermoplasma acidophilum DSM 17281
STOK273063 ncbi Sulfolobus tokodaii 71
SSUI391296 ncbi Streptococcus suis 98HAH330
SSUI391295 ncbi Streptococcus suis 05ZYH331
SSP387093 ncbi Sulfurovum sp. NBC37-10
SSOL273057 ncbi Sulfolobus solfataricus P20
SSAP342451 ncbi Staphylococcus saprophyticus saprophyticus ATCC 153051
SPYO370554 ncbi Streptococcus pyogenes MGAS107500
SPYO370553 ncbi Streptococcus pyogenes MGAS20960
SPYO370552 ncbi Streptococcus pyogenes MGAS102700
SPYO370551 ncbi Streptococcus pyogenes MGAS94290
SPYO319701 ncbi Streptococcus pyogenes MGAS61800
SPYO293653 ncbi Streptococcus pyogenes MGAS50050
SPYO286636 ncbi Streptococcus pyogenes MGAS103940
SPYO198466 ncbi Streptococcus pyogenes MGAS3150
SPYO193567 ncbi Streptococcus pyogenes SSI-10
SPYO186103 ncbi Streptococcus pyogenes MGAS82320
SPYO160490 ncbi Streptococcus pyogenes M1 GAS0
SPNE488221 ncbi Streptococcus pneumoniae 705851
SPNE487214 ncbi Streptococcus pneumoniae Hungary19A-61
SPNE487213 ncbi Streptococcus pneumoniae Taiwan19F-141
SPNE171101 ncbi Streptococcus pneumoniae R61
SPNE170187 ncbi Streptococcus pneumoniae G541
SPNE1313 Streptococcus pneumoniae1
SMAR399550 ncbi Staphylothermus marinus F10
SGOR29390 Streptococcus gordonii Challis1
SFUM335543 ncbi Syntrophobacter fumaroxidans MPOB0
SERY405948 ncbi Saccharopolyspora erythraea NRRL 23381
SAGA208435 ncbi Streptococcus agalactiae 2603V/R1
SAGA205921 ncbi Streptococcus agalactiae A9091
SACI56780 ncbi Syntrophus aciditrophicus SB0
SACI330779 ncbi Sulfolobus acidocaldarius DSM 6390
RTYP257363 ncbi Rickettsia typhi Wilmington0
RSP357808 ncbi Roseiflexus sp. RS-11
RRIC452659 ncbi Rickettsia rickettsii Iowa0
RRIC392021 ncbi Rickettsia rickettsii Sheila Smith0
RPRO272947 ncbi Rickettsia prowazekii Madrid E0
RMAS416276 ncbi Rickettsia massiliae MTU50
RFEL315456 ncbi Rickettsia felis URRWXCal20
RCON272944 ncbi Rickettsia conorii Malish 70
RCAN293613 ncbi Rickettsia canadensis McKiel0
RBEL391896 ncbi Rickettsia bellii OSU 85-3890
RBEL336407 ncbi Rickettsia bellii RML369-C0
RALB246199 Ruminococcus albus 80
RAKA293614 ncbi Rickettsia akari Hartford0
PTHE370438 ncbi Pelotomaculum thermopropionicum SI1
PPEN278197 ncbi Pediococcus pentosaceus ATCC 257451
PISL384616 ncbi Pyrobaculum islandicum DSM 41840
PFUR186497 ncbi Pyrococcus furiosus DSM 36381
PCAR338963 ncbi Pelobacter carbinolicus DSM 23801
PAST100379 Onion yellows phytoplasma1
PARS340102 ncbi Pyrobaculum arsenaticum DSM 135140
PAER178306 ncbi Pyrobaculum aerophilum IM20
PABY272844 ncbi Pyrococcus abyssi GE51
OTSU357244 ncbi Orientia tsutsugamushi Boryong0
NSP387092 ncbi Nitratiruptor sp. SB155-21
NSEN222891 ncbi Neorickettsia sennetsu Miyayama1
NPHA348780 ncbi Natronomonas pharaonis DSM 21601
MTUB419947 ncbi Mycobacterium tuberculosis H37Ra1
MTUB336982 ncbi Mycobacterium tuberculosis F111
MTHE349307 ncbi Methanosaeta thermophila PT0
MTHE187420 ncbi Methanothermobacter thermautotrophicus Delta H0
MTBRV ncbi Mycobacterium tuberculosis H37Rv1
MTBCDC ncbi Mycobacterium tuberculosis CDC15511
MSYN262723 ncbi Mycoplasma synoviae 530
MSTA339860 ncbi Methanosphaera stadtmanae DSM 30910
MSED399549 ncbi Metallosphaera sedula DSM 53480
MPUL272635 ncbi Mycoplasma pulmonis UAB CTIP1
MPNE272634 ncbi Mycoplasma pneumoniae M1290
MPEN272633 ncbi Mycoplasma penetrans HF-20
MMOB267748 ncbi Mycoplasma mobile 163K1
MMAZ192952 ncbi Methanosarcina mazei Go10
MMAR444158 ncbi Methanococcus maripaludis C60
MMAR426368 ncbi Methanococcus maripaludis C70
MMAR402880 ncbi Methanococcus maripaludis C50
MMAR368407 ncbi Methanoculleus marisnigri JR11
MMAR267377 ncbi Methanococcus maripaludis S20
MLEP272631 ncbi Mycobacterium leprae TN1
MLAB410358 ncbi Methanocorpusculum labreanum Z1
MKAN190192 ncbi Methanopyrus kandleri AV190
MJAN243232 ncbi Methanocaldococcus jannaschii DSM 26610
MHYO295358 ncbi Mycoplasma hyopneumoniae 2321
MHYO262722 ncbi Mycoplasma hyopneumoniae 74481
MHYO262719 ncbi Mycoplasma hyopneumoniae J1
MHUN323259 ncbi Methanospirillum hungatei JF-11
MGEN243273 ncbi Mycoplasma genitalium G370
MCAP340047 ncbi Mycoplasma capricolum capricolum ATCC 273431
MBUR259564 ncbi Methanococcoides burtonii DSM 62420
MBOV410289 ncbi Mycobacterium bovis BCG str. Pasteur 1173P21
MBOV233413 ncbi Mycobacterium bovis AF2122/971
MBAR269797 ncbi Methanosarcina barkeri Fusaro0
MART243272 ncbi Mycoplasma arthritidis 158L3-10
MAEO419665 ncbi Methanococcus aeolicus Nankai-30
MACE188937 ncbi Methanosarcina acetivorans C2A0
LSAK314315 ncbi Lactobacillus sakei sakei 23K1
LPLA220668 ncbi Lactobacillus plantarum WCFS11
LLAC272623 ncbi Lactococcus lactis lactis Il14031
LLAC272622 ncbi Lactococcus lactis cremoris SK110
LJOH257314 ncbi Lactobacillus johnsonii NCC 5331
LINT363253 ncbi Lawsonia intracellularis PHE/MN1-001
LHEL405566 ncbi Lactobacillus helveticus DPC 45711
LGAS324831 ncbi Lactobacillus gasseri ATCC 333231
LDEL390333 ncbi Lactobacillus delbrueckii bulgaricus ATCC 118420
LDEL321956 ncbi Lactobacillus delbrueckii bulgaricus ATCC BAA-3650
LCAS321967 ncbi Lactobacillus casei ATCC 3340
LBRE387344 ncbi Lactobacillus brevis ATCC 3670
IHOS453591 ncbi Ignicoccus hospitalis KIN4/I0
HWAL362976 ncbi Haloquadratum walsbyi DSM 167900
HSP64091 ncbi Halobacterium sp. NRC-11
HSAL478009 ncbi Halobacterium salinarum R11
HPYL85963 ncbi Helicobacter pylori J990
HPYL357544 ncbi Helicobacter pylori HPAG10
HPY ncbi Helicobacter pylori 266950
HNEP81032 Hyphomonas neptunium1
HMUK485914 ncbi Halomicrobium mukohataei DSM 122861
HMAR272569 ncbi Haloarcula marismortui ATCC 430491
HHEP235279 ncbi Helicobacter hepaticus ATCC 514490
HBUT415426 ncbi Hyperthermus butylicus DSM 54561
HACI382638 ncbi Helicobacter acinonychis Sheeba0
FSUC59374 ncbi Fibrobacter succinogenes succinogenes S850
FNUC190304 ncbi Fusobacterium nucleatum nucleatum ATCC 255861
FNOD381764 ncbi Fervidobacterium nodosum Rt17-B11
ERUM302409 ncbi Ehrlichia ruminantium Gardel1
ERUM254945 ncbi Ehrlichia ruminantium Welgevonden1
ECHA205920 ncbi Ehrlichia chaffeensis Arkansas1
ECAN269484 ncbi Ehrlichia canis Jake1
DSP255470 ncbi Dehalococcoides sp. CBDB10
DSP216389 ncbi Dehalococcoides sp. BAV10
DRAD243230 ncbi Deinococcus radiodurans R11
DPSY177439 ncbi Desulfotalea psychrophila LSv541
DOLE96561 ncbi Desulfococcus oleovorans Hxd31
DGEO319795 ncbi Deinococcus geothermalis DSM 113001
DETH243164 ncbi Dehalococcoides ethenogenes 1950
CTRA471473 ncbi Chlamydia trachomatis L2b/UCH-1/proctitis0
CTRA471472 ncbi Chlamydia trachomatis 434/Bu0
CSUL444179 ncbi Candidatus Sulcia muelleri GWSS0
CPRO264201 ncbi Candidatus Protochlamydia amoebophila UWE251
CPNE182082 ncbi Chlamydophila pneumoniae TW-1830
CPNE138677 ncbi Chlamydophila pneumoniae J1380
CPNE115713 ncbi Chlamydophila pneumoniae CWL0290
CPNE115711 ncbi Chlamydophila pneumoniae AR390
CPEL335992 ncbi Candidatus Pelagibacter ubique HTCC10621
CMUR243161 ncbi Chlamydia muridarum Nigg0
CMET456442 ncbi Candidatus Methanoregula boonei 6A81
CMAQ397948 ncbi Caldivirga maquilingensis IC-1670
CJEJ407148 ncbi Campylobacter jejuni jejuni 811160
CJEJ360109 ncbi Campylobacter jejuni doylei 269.970
CJEJ354242 ncbi Campylobacter jejuni jejuni 81-1760
CJEJ195099 ncbi Campylobacter jejuni RM12210
CJEJ192222 ncbi Campylobacter jejuni jejuni NCTC 111680
CJEI306537 ncbi Corynebacterium jeikeium K4111
CHOM360107 ncbi Campylobacter hominis ATCC BAA-3810
CGLU196627 ncbi Corynebacterium glutamicum ATCC 130320
CFET360106 ncbi Campylobacter fetus fetus 82-400
CFEL264202 ncbi Chlamydophila felis Fe/C-560
CEFF196164 ncbi Corynebacterium efficiens YS-3140
CDIP257309 ncbi Corynebacterium diphtheriae NCTC 131291
CDES477974 ncbi Candidatus Desulforudis audaxviator MP104C1
CCUR360105 ncbi Campylobacter curvus 525.920
CCON360104 ncbi Campylobacter concisus 138260
CCAV227941 ncbi Chlamydophila caviae GPIC0
CBOT508765 ncbi Clostridium botulinum B str. Eklund 17B1
CABO218497 ncbi Chlamydophila abortus S26/30
BXEN266265 ncbi Burkholderia xenovorans LB4000
BTUR314724 ncbi Borrelia turicatae 91E1350
BSP107806 ncbi Buchnera aphidicola APS (Acyrthosiphon pisum)0
BLON206672 ncbi Bifidobacterium longum NCC27051
BHER314723 ncbi Borrelia hermsii DAH0
BGAR290434 ncbi Borrelia garinii PBi0
BCIC186490 Candidatus Baumannia cicadellinicola1
BBUR224326 ncbi Borrelia burgdorferi B310
BAPH372461 ncbi Buchnera aphidicola Cc (Cinara cedri)1
BAPH198804 ncbi Buchnera aphidicola Sg (Schizaphis graminum)1
BAFZ390236 ncbi Borrelia afzelii PKo0
AYEL322098 ncbi Aster yellows witches-broom phytoplasma AYWB0
AURANTIMONAS Aurantimonas manganoxydans SI85-9A10
APER272557 ncbi Aeropyrum pernix K10
AFUL224325 ncbi Archaeoglobus fulgidus DSM 43040
ABUT367737 ncbi Arcobacter butzleri RM40180
AAEO224324 ncbi Aquifex aeolicus VF51


Names of the homologs of the genes in the group in each of these orgs
  EG12878   EG11442   EG11333   EG11324   EG11323   EG11158   EG10697   
WSUC273121
UURE95667
UURE95664
UPAR505682
UMET351160
TSP28240 TRQ2_0737
TROS309801 TRD_0751
TPET390874 TPET_0713
TPEN368408
TPAL243276
TMAR243274 TM_0211
TLET416591 TLET_1959
TKOD69014 TK2035
TDEN326298 TMDEN_1524
TDEN243275 TDE_1627
TACI273075 TA0010
STOK273063 ST1206
SSUI391296
SSUI391295 SSU05_2043
SSP387093
SSOL273057
SSAP342451 SSP1218
SPYO370554
SPYO370553
SPYO370552
SPYO370551
SPYO319701
SPYO293653
SPYO286636
SPYO198466
SPYO193567
SPYO186103
SPYO160490
SPNE488221 SP70585_2201
SPNE487214 SPH_2283
SPNE487213 SPT_2104
SPNE171101 SPR1905
SPNE170187 SPN09163
SPNE1313 SPJ_2115
SMAR399550
SGOR29390 SGO_1864
SFUM335543
SERY405948 SACE_5701
SAGA208435 SAG_0403
SAGA205921 SAK_0476
SACI56780
SACI330779
RTYP257363
RSP357808 ROSERS_1526
RRIC452659
RRIC392021
RPRO272947
RMAS416276
RFEL315456
RCON272944
RCAN293613
RBEL391896
RBEL336407
RALB246199
RAKA293614
PTHE370438 PTH_2652
PPEN278197 PEPE_0729
PISL384616
PFUR186497 PF1341
PCAR338963 PCAR_2351
PAST100379 PAM245
PARS340102
PAER178306
PABY272844 PAB1638
OTSU357244
NSP387092 NIS_0431
NSEN222891 NSE_0133
NPHA348780 NP4774A
MTUB419947 MRA_2227
MTUB336982 TBFG_12239
MTHE349307
MTHE187420
MTBRV RV2211C
MTBCDC MT2267
MSYN262723
MSTA339860
MSED399549
MPUL272635 MYPU_4880
MPNE272634
MPEN272633
MMOB267748 MMOB5500
MMAZ192952
MMAR444158
MMAR426368
MMAR402880
MMAR368407 MEMAR_1560
MMAR267377
MLEP272631 ML0865
MLAB410358 MLAB_1209
MKAN190192
MJAN243232
MHYO295358 MHP680
MHYO262722 MHP7448_0659
MHYO262719 MHJ_0659
MHUN323259 MHUN_0818
MGEN243273
MCAP340047 MCAP_0467
MBUR259564
MBOV410289 BCG_2227C
MBOV233413 MB2234C
MBAR269797
MART243272
MAEO419665
MACE188937
LSAK314315 LSA1332
LPLA220668 LP_1570
LLAC272623 L90422
LLAC272622
LJOH257314 LJ_1619
LINT363253 LI0770
LHEL405566 LHV_1568
LGAS324831 LGAS_1385
LDEL390333
LDEL321956
LCAS321967
LBRE387344
IHOS453591
HWAL362976
HSP64091 VNG1606G
HSAL478009 OE3278R
HPYL85963
HPYL357544
HPY
HNEP81032 HNE_2602
HMUK485914 HMUK_1892
HMAR272569 RRNAC1500
HHEP235279
HBUT415426 HBUT_0451
HACI382638
FSUC59374
FNUC190304 FN1949
FNOD381764 FNOD_0976
ERUM302409 ERGA_CDS_05030
ERUM254945 ERWE_CDS_05120
ECHA205920 ECH_0541
ECAN269484 ECAJ_0492
DSP255470
DSP216389
DRAD243230 DR_1246
DPSY177439 DP0646
DOLE96561 DOLE_2744
DGEO319795 DGEO_1905
DETH243164
CTRA471473
CTRA471472
CSUL444179
CPRO264201 PC0281
CPNE182082
CPNE138677
CPNE115713
CPNE115711
CPEL335992 SAR11_0666
CMUR243161
CMET456442 MBOO_0994
CMAQ397948
CJEJ407148
CJEJ360109
CJEJ354242
CJEJ195099
CJEJ192222
CJEI306537 JK1526
CHOM360107
CGLU196627
CFET360106
CFEL264202
CEFF196164
CDIP257309 DIP1341
CDES477974 DAUD_2011
CCUR360105
CCON360104
CCAV227941
CBOT508765 CLL_A0346
CABO218497
BXEN266265
BTUR314724
BSP107806
BLON206672 BL1350
BHER314723
BGAR290434
BCIC186490 BCI_0648
BBUR224326
BAPH372461 BCC_258
BAPH198804 BUSG396
BAFZ390236
AYEL322098
AURANTIMONAS
APER272557
AFUL224325
ABUT367737
AAEO224324 AQ_1731


Organism features enriched in list (features available for 185 out of the 195 orgs in the list)
Feature    Pvalue       Num occurrences in list  Total num occurrences  
Arrangment:Pairs 0.000019418112
Arrangment:Tetrads 0.009915544
Disease:Pharyngitis 0.000092588
Disease:Wide_range_of_infections 2.668e-61111
Disease:bronchitis_and_pneumonitis 0.000092588
Endospores:No 2.161e-15110211
Endospores:Yes 1.741e-6353
GC_Content_Range4:0-40 1.799e-10102213
GC_Content_Range4:40-60 0.006304459224
GC_Content_Range4:60-100 4.716e-723145
GC_Content_Range7:0-30 1.826e-63047
GC_Content_Range7:30-40 0.000066872166
GC_Content_Range7:50-60 0.000175919107
GC_Content_Range7:60-70 3.488e-622134
Genome_Size_Range5:0-2 4.126e-33110155
Genome_Size_Range5:4-6 5.842e-2212184
Genome_Size_Range5:6-10 1.900e-6247
Genome_Size_Range9:0-1 5.559e-72127
Genome_Size_Range9:1-2 6.073e-2489128
Genome_Size_Range9:3-4 0.00855601677
Genome_Size_Range9:4-5 9.825e-81096
Genome_Size_Range9:5-6 1.054e-13288
Gram_Stain:Gram_Neg 1.825e-680333
Habitat:Host-associated 5.579e-689206
Habitat:Multiple 4.020e-634178
Habitat:Specialized 0.00043972853
Habitat:Terrestrial 0.0027444331
Motility:No 0.000055567151
Motility:Yes 1.613e-659267
Optimal_temp.:30-35 0.004660967
Optimal_temp.:30-37 0.0079994118
Optimal_temp.:37 0.005594344106
Optimal_temp.:85 0.009915544
Oxygen_Req:Aerobic 0.000106540185
Oxygen_Req:Anaerobic 0.000011051102
Oxygen_Req:Microaerophilic 0.00170781218
Pathogenic_in:Animal 0.00877021366
Pathogenic_in:Swine 0.003099755
Shape:Coccus 0.00111603882
Shape:Irregular_coccus 7.963e-81617
Shape:Rod 7.714e-1469347
Shape:Sphere 0.00014341419
Shape:Spiral 8.193e-62334
Temp._range:Hyperthermophilic 3.206e-82023
Temp._range:Mesophilic 0.0022807138473



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ORGANISMS ENRICHED FOR GROUP:




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ORGANISMS DEPLETED FOR GROUP:




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PHYLOGENETIC PROFILE SIMILARITY WITH KNOWN PATHWAYS:

Pathways or complexes with absolute value of Pearson coefficient with respect to candidate larger than 0.4 are listed below
The candidate is assumed to exist in orgs listed in section List of organisms containing most genes from the group


Pathway or complex  # Orgs containing it  # of those orgs also containing candidate  Pearson Coeff  
AST-PWY (arginine degradation II (AST pathway))120810.6174
GLYCOCAT-PWY (glycogen degradation I)2461100.5467
COBALSYN-PWY (adenosylcobalamin salvage from cobinamide I)195960.5354
PWY0-1241 (ADP-L-glycero-β-D-manno-heptose biosynthesis)2181000.5184
P184-PWY (protocatechuate degradation I (meta-cleavage pathway))94610.5045
PWY-5148 (acyl-CoA hydrolysis)2271000.4995
GLUCONSUPER-PWY (D-gluconate degradation)229990.4868
PWY-5861 (superpathway of demethylmenaquinone-8 biosynthesis)50410.4838
PWY4FS-7 (phosphatidylglycerol biosynthesis I (plastidic))2911120.4833
GALACTITOLCAT-PWY (galactitol degradation)73510.4827
PWY-5918 (heme biosynthesis I)2721080.4821
PWY-5111 (CMP-KDO biosynthesis II (from D-arabinose 5-phosphate))3001130.4771
PHOSLIPSYN-PWY (phospholipid biosynthesis I)2901110.4767
PWY0-1319 (CDP-diacylglycerol biosynthesis II)2961120.4752
ENTNER-DOUDOROFF-PWY (Entner-Doudoroff pathway I)2491020.4733
GLYCOLYSIS-E-D (superpathway of glycolysis and Entner-Doudoroff)2491020.4733
PWY0-1329 (succinate to cytochrome bo oxidase electron transfer)96590.4730
KDO-LIPASYN-PWY (KDO2-lipid A biosynthesis I)225960.4691
HEME-BIOSYNTHESIS-II (heme biosynthesis from uroporphyrinogen-III I)2861080.4584
LIPA-CORESYN-PWY (Lipid A-core biosynthesis)176820.4550
PWY0-1299 (arginine dependent acid resistance)199880.4549
PWY-4041 (γ-glutamyl cycle)2791050.4451
PWY0-1315 (L-lactaldehyde degradation (anaerobic))45360.4426
PWY-1269 (CMP-KDO biosynthesis I)3251130.4390
PWY0-1182 (trehalose degradation II (trehalase))70460.4334
GLUTATHIONESYN-PWY (glutathione biosynthesis)3391140.4272
PWY-5386 (methylglyoxal degradation I)3051070.4196
ECASYN-PWY (enterobacterial common antigen biosynthesis)191820.4194
PWY-5755 (4-hydroxybenzoate biosynthesis II (bacteria and fungi))81480.4065
NAGLIPASYN-PWY (lipid IVA biosynthesis)3481130.4063



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PAIRWISE GENOME CONTEXT SCORE MATRIX:

  EG11442   EG11333   EG11324   EG11323   EG11158   EG10697   
EG128780.9989810.9993630.9994580.9996190.999650.999341
EG114420.9990440.9989470.9991050.998860.998605
EG113330.9999120.999530.999270.999352
EG113240.9996050.9993110.999678
EG113230.9995620.99957
EG111580.9992
EG10697



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PAIRWISE BLAST SCORES:

  EG12878   EG11442   EG11333   EG11324   EG11323   EG11158   EG10697   
EG128780.0f0------
EG11442-0.0f0-----
EG11333--0.0f01.5e-40---
EG11324--4.7e-370.0f0---
EG11323----0.0f0--
EG11158-----0.0f0-
EG10697------0.0f0



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PATHWAYS OR PROTEIN COMPLEX MATCHES IN TARGET ORG:

For each case, all genes involved in the pathway or complex are listed. For each gene we list: a tag indicating whether the gene is part of the candidate list or not, the average and the minimum scores of the gene to the candidate list, the gene name, and its product names.



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GENOME CONTEXT INFORMATION:

Each row corresponds to a replicon in an organism, each column to a gene in the candidate. The second column indicates whether the organims was included in the list used to compute the genome context scores or not. Some organisms are not included because they are phylogenetically too similar to others already in the list.
The number in the matrix indicate the position of the homolog of the gene in the replicon. All numbers are relative to the smaller one, which is assigned a position of zero. Two columns with the same number indicate that the two genes matched the same gene in that organism.

Genome browser links for gene clusters

The links below opens a genome browser BioCyc page for each cluster of genes in the target genome. These pages shows the central gene of the cluster in the target genome and its best homolog in the reference genomes, for the genomes that contain homologs for at least 75% of the genes in the group. Only one genome per phylogenetic cluster of organisms is shown, to keep the list smaller.

EG10697 EG11158 EG11323 EG11324 EG11333 EG11442 EG12878 (centered at EG10697)


ORG:REPLICON:CIRC?\GENE  IN REF LIST  EG12878   EG11442   EG11333   EG11324   EG11323   EG11158   EG10697   
136/623400/623242/623232/623130/623399/623322/623
AAEO224324:0:Tyes-----0-
AAUR290340:2:Tyes-1219---790
AAVE397945:0:Tyes01585----2995
ABAC204669:0:Tyes-0----767
ABAU360910:0:Tyes-32330722611-02610
ABOR393595:0:Tyes-0457106
ACAU438753:0:Tyes-378937733773-0-
ACEL351607:0:Tyes-1680---0503
ACRY349163:8:Tyes-0328328-2454-
ADEH290397:0:Tyes-202---02260
AEHR187272:0:Tyes13865304
AFER243159:0:Tyes-1748410410-6490
AHYD196024:0:Tyes1536154015391538153725220
ALAI441768:0:Tyes-0----447
AMAR234826:0:Tyes--490--0-
AMAR329726:9:Tyes-024782478-30092238
AMET293826:0:Tyes-0---26881109
ANAE240017:0:Tyes-157---15400
AORE350688:0:Tyes-0---2208-
APHA212042:0:Tyes--0--644-
APLE416269:0:Tyes1-22622220554
APLE434271:0:Tno1-23322920517
ASAL382245:5:Tyes9589549559569570-
ASP1667:3:Tyes-----780
ASP232721:2:Tyes-18350---3817
ASP62928:0:Tyes0674932302--2301
ASP62977:0:Tyes--12119010
ASP76114:2:Tyes-294417411--0
AVAR240292:3:Tyes-153800-8741555
BABO262698:1:Tno--164164-0-
BAMB339670:3:Tno-0308477-3024478
BAMB398577:3:Tno-0316481-2842482
BAMY326423:0:Tyes-10---420
BANT260799:0:Tno-2352---23880
BANT261594:2:Tno-2351---23880
BANT568206:2:Tyes-1721---17600
BANT592021:2:Tno-2479---25180
BAPH198804:0:Tyes-----0-
BAPH372461:0:Tyes0------
BBAC264462:0:Tyes-442----0
BBAC360095:0:Tyes-93000---
BBRO257310:0:Tyes-65344603828-03826
BCAN483179:0:Tno-0-----
BCAN483179:1:Tno--175175-0-
BCEN331271:2:Tno-273623980-22351
BCEN331272:3:Tyes-0379547-2883548
BCER226900:1:Tyes-2340---23760
BCER288681:0:Tno-2254---22890
BCER315749:1:Tyes-22---960
BCER405917:1:Tyes-2190---22280
BCER572264:1:Tno-2345---23830
BCIC186490:0:Tyes-----0-
BCLA66692:0:Tyes-775---0763
BFRA272559:1:Tyes-379---03217
BFRA295405:0:Tno-343---03456
BHAL272558:0:Tyes-1401---01385
BHEN283166:0:Tyes-0237237---
BJAP224911:0:Fyes-518700-936-
BLIC279010:0:Tyes-14---470
BLON206672:0:Tyes------0
BMAL243160:0:Tno--0----
BMAL243160:1:Tno-577-0-8731
BMAL320388:0:Tno--0----
BMAL320388:1:Tno-2966-0-26511
BMAL320389:0:Tyes--0----
BMAL320389:1:Tyes-513-0-8131
BMEL224914:1:Tno--00-157-
BMEL359391:1:Tno--155155-0-
BOVI236:1:Tyes--146146-0-
BPAR257311:0:Tno-54437783206-03204
BPER257313:0:Tyes-027742902-25902900
BPET94624:0:Tyes-37990594-4480596
BPSE272560:1:Tyes-311728132647-02646
BPSE320372:1:Tno-035943409-3333408
BPSE320373:1:Tno-353931912991-02990
BPUM315750:0:Tyes-11---420
BQUI283165:0:Tyes-0186186---
BSP36773:2:Tyes-0296468-3113469
BSP376:0:Tyes-442700-773-
BSUB:0:Tyes-11---460
BSUI204722:0:Tyes-0-----
BSUI204722:1:Tyes--166166-0-
BSUI470137:0:Tno-0---456-
BSUI470137:1:Tno--00---
BTHA271848:1:Tno-296126371011-01012
BTHE226186:0:Tyes-2096---17680
BTHU281309:1:Tno-2218---22530
BTHU412694:1:Tno-2047---20760
BTRI382640:1:Tyes-0419419-187-
BVIE269482:7:Tyes-0340497-2937498
BWEI315730:4:Tyes-2246---22820
CACE272562:1:Tyes-----01698
CAULO:0:Tyes-329300-3183-
CBEI290402:0:Tyes-----2360
CBLO203907:0:Tyes1-602-0-
CBLO291272:0:Tno1-32-0-
CBOT36826:1:Tno-152---20380
CBOT441770:0:Tyes-151---19280
CBOT441771:0:Tno-276---19690
CBOT441772:1:Tno-140---20050
CBOT498213:1:Tno-137---20330
CBOT508765:1:Tyes-----0-
CBOT515621:2:Tyes-147---21880
CBOT536232:0:Tno-167---22530
CBUR227377:1:Tyes11584109-0-
CBUR360115:1:Tno016733635-1-
CBUR434922:2:Tno1669016611662-1670-
CCHL340177:0:Tyes-763---0-
CDES477974:0:Tyes-----0-
CDIF272563:1:Tyes-0---1820-
CDIP257309:0:Tyes------0
CHUT269798:0:Tyes-2100---02303
CHYD246194:0:Tyes-0---239-
CJAP155077:0:Tyes213266405
CJEI306537:0:Tyes-----0-
CKLU431943:1:Tyes-284---0-
CKOR374847:0:Tyes-327----0
CMET456442:0:Tyes-----0-
CMIC31964:2:Tyes-2100---01799
CMIC443906:2:Tyes-1034---12880
CNOV386415:0:Tyes-----01343
CPEL335992:0:Tyes-0-----
CPER195102:1:Tyes-----0223
CPER195103:0:Tno-----0204
CPER289380:3:Tyes-----0205
CPHY357809:0:Tyes-0---1052-
CPRO264201:0:Fyes-0-----
CPSY167879:0:Tyes0654223063
CRUT413404:0:Tyes-755798296-7970
CSAL290398:0:Tyes1182954-03
CSP501479:7:Fyes-0-----
CSP501479:8:Fyes--00-931-
CSP78:2:Tyes-364938503850-0-
CTEP194439:0:Tyes-725---0-
CTET212717:0:Tyes-----0540
CVES412965:0:Tyes-684725--7240
CVIO243365:0:Tyes030066532683-12684
DARO159087:0:Tyes1569010511205--1204
DDES207559:0:Tyes-1207----0
DGEO319795:1:Tyes-0-----
DHAF138119:0:Tyes-0---1100-
DNOD246195:0:Tyes283742--2857460
DOLE96561:0:Tyes-----0-
DPSY177439:2:Tyes-----0-
DRAD243230:3:Tyes------0
DRED349161:0:Tyes-0---2169-
DSHI398580:5:Tyes-265900-2747-
DVUL882:1:Tyes-1312---0-
ECAN269484:0:Tyes-----0-
ECAR218491:0:Tyes429101362
ECHA205920:0:Tyes-----0-
ECOL199310:0:Tno7034685
ECOL316407:0:Tno5012473
ECOL331111:6:Tno6023574
ECOL362663:0:Tno5012463
ECOL364106:1:Tno7023584
ECOL405955:2:Tyes5012463
ECOL409438:6:Tyes5012463
ECOL413997:0:Tno5012463
ECOL439855:4:Tno7034685
ECOL469008:0:Tno1654203
ECOL481805:0:Tno2765304
ECOL585034:0:Tno5012483
ECOL585035:0:Tno5012473
ECOL585055:0:Tno5012473
ECOL585056:2:Tno5012473
ECOL585057:0:Tno5012473
ECOL585397:0:Tno5012473
ECOL83334:0:Tno5012473
ECOLI:0:Tno5012473
ECOO157:0:Tno5012473
EFAE226185:3:Tyes-----17130
EFER585054:1:Tyes5012483
ELIT314225:0:Tyes-987798798-0-
ERUM254945:0:Tyes-----0-
ERUM302409:0:Tno-----0-
ESP42895:1:Tyes5012463
FALN326424:0:Tyes-0---1206516
FJOH376686:0:Tyes-2320----0
FMAG334413:1:Tyes-0---761-
FNOD381764:0:Tyes-0-----
FNUC190304:0:Tyes------0
FPHI484022:1:Tyes-01150-11481147-
FRANT:0:Tno-0736737738739-
FSP106370:0:Tyes-0---912364
FSP1855:0:Tyes-1089---0564
FTUL351581:0:Tno-0228227226225-
FTUL393011:0:Tno-0215214213212-
FTUL393115:0:Tyes-0732733734735-
FTUL401614:0:Tyes-0726727728729-
FTUL418136:0:Tno-7653210-
FTUL458234:0:Tno-0228227226225-
GBET391165:0:Tyes--1043--0-
GFOR411154:0:Tyes-647---23260
GKAU235909:1:Tyes-14---380
GMET269799:1:Tyes-2173---1920
GOXY290633:5:Tyes--518518-0-
GSUL243231:0:Tyes-0---7571637
GTHE420246:1:Tyes-20---450
GURA351605:0:Tyes-0---7581473
GVIO251221:0:Tyes-3480---6730
HARS204773:0:Tyes--0154-2593155
HAUR316274:2:Tyes-117----0
HBUT415426:0:Tyes------0
HCHE349521:0:Tyes28929540295293288294
HDUC233412:0:Tyes382-0-383-731
HHAL349124:0:Tyes1910485304
HINF281310:0:Tyes40---1410
HINF374930:0:Tyes1---41042
HINF71421:0:Tno41---1420
HMAR272569:8:Tyes-0-----
HMOD498761:0:Tyes-----12150
HMUK485914:1:Tyes-0-----
HNEP81032:0:Tyes-----0-
HSAL478009:4:Tyes-0-----
HSOM205914:1:Tyes4-01352
HSOM228400:0:Tno4-01352
HSP64091:2:Tno-0-----
ILOI283942:0:Tyes6023594
JSP290400:1:Tyes-323200-2993-
JSP375286:0:Tyes--0190-3008191
KPNE272620:2:Tyes5012463
KRAD266940:2:Fyes-1647---20140
LACI272621:0:Tyes-----1640
LBIF355278:2:Tyes-1314----0
LBIF456481:2:Tno-1373----0
LBOR355276:1:Tyes-0----1509
LBOR355277:1:Tno-1510----0
LCHO395495:0:Tyes-1456153--0-
LGAS324831:0:Tyes-----0-
LHEL405566:0:Tyes-----0-
LINN272626:1:Tno-0----228
LINT189518:1:Tyes-0----2343
LINT267671:1:Tno-0----990
LINT363253:3:Tyes-----0-
LJOH257314:0:Tyes-----0-
LLAC272623:0:Tyes------0
LMES203120:1:Tyes-----0521
LMON169963:0:Tno-12---0242
LMON265669:0:Tyes-12---0247
LPLA220668:0:Tyes-----0-
LPNE272624:0:Tno-423205151
LPNE297245:1:Fno-383205511
LPNE297246:1:Fyes-413205571
LPNE400673:0:Tno-4032025561
LREU557436:0:Tyes-----220
LSAK314315:0:Tyes-----0-
LSPH444177:1:Tyes-3395---34100
LWEL386043:0:Tyes-12---0240
LXYL281090:0:Tyes-----0261
MABS561007:1:Tyes-872---0-
MAER449447:0:Tyes-461211471147-45470
MAQU351348:2:Tyes9-013102
MAVI243243:0:Tyes-1159---0-
MBOV233413:0:Tno-0-----
MBOV410289:0:Tno-0-----
MCAP243233:0:Tyes2290013132287228922912288
MCAP340047:0:Tyes-----0-
MEXT419610:0:Tyes-01248--1524-
MFLA265072:0:Tyes0-23732017--2018
MFLO265311:0:Tyes-----0132
MGIL350054:3:Tyes-1057---0-
MHUN323259:0:Tyes-----0-
MHYO262719:0:Tyes------0
MHYO262722:0:Tno------0
MHYO295358:0:Tno------0
MLAB410358:0:Tyes-----0-
MLEP272631:0:Tyes-0-----
MLOT266835:2:Tyes-41730233023-0-
MMAG342108:0:Tyes-75400-3212-
MMAR368407:0:Tyes-----0-
MMAR394221:0:Tyes--489489-0-
MMOB267748:0:Tyes------0
MMYC272632:0:Tyes-----1390
MPET420662:1:Tyes-1188-0-30399
MPUL272635:0:Tyes------0
MSME246196:0:Tyes-0---1177-
MSP164756:1:Tno-0---994-
MSP164757:0:Tno-0---1353-
MSP189918:2:Tyes-0---1020-
MSP266779:3:Tyes-022362236-2193-
MSP400668:0:Tyes1117326702670267202671
MSP409:2:Tyes-60025402540-0-
MSUC221988:0:Tyes2---304
MTBCDC:0:Tno-0-----
MTBRV:0:Tno-0-----
MTHE264732:0:Tyes-395---5840
MTUB336982:0:Tno-0-----
MTUB419947:0:Tyes-0-----
MVAN350058:0:Tyes-0---1256-
MXAN246197:0:Tyes-983---9220
NARO279238:0:Tyes-171726812681-18420
NEUR228410:0:Tyes12990916268--1561
NEUT335283:2:Tyes-7404790-1084875
NFAR247156:2:Tyes-0---3289-
NGON242231:0:Tyes5800---535-
NHAM323097:2:Tyes-147100-3322-
NMEN122586:0:Tno16742450--1713-
NMEN122587:0:Tyes464031744--0-
NMEN272831:0:Tno133201158--1369-
NMEN374833:0:Tno03831667--1910-
NMUL323848:3:Tyes4968522962296--0
NOCE323261:1:Tyes20420204720462044-2045
NPHA348780:2:Tyes-0-----
NSEN222891:0:Tyes-----0-
NSP103690:6:Tyes-438340474047-46030
NSP35761:1:Tyes-1517---0572
NSP387092:0:Tyes------0
NWIN323098:0:Tyes-121900-2683-
OANT439375:4:Tyes-0-----
OANT439375:5:Tyes--00-245-
OCAR504832:0:Tyes-108700-2956-
OIHE221109:0:Tyes-8---280
PABY272844:0:Tyes-0-----
PACN267747:0:Tyes-260---0166
PAER208963:0:Tyes1206810139
PAER208964:0:Tno1206810139
PARC259536:0:Tyes-168-011491038-
PAST100379:0:Tyes------0
PATL342610:0:Tyes-9200261
PCAR338963:0:Tyes-----0-
PCRY335284:1:Tyes-2141014531297-
PDIS435591:0:Tyes-108---0889
PENT384676:0:Tyes9035-106
PFLU205922:0:Tyes9035-106
PFLU216595:1:Tyes90357106
PFLU220664:0:Tyes8035796
PFUR186497:0:Tyes-0-----
PGIN242619:0:Tyes-0---255-
PHAL326442:1:Tyes02218271270268373269
PHOR70601:0:Tyes-178----0
PING357804:0:Tyes2198475304
PINT246198:1:Tyes-128---0397
PLUM243265:0:Fyes5012463
PLUT319225:0:Tyes-0---593-
PMAR146891:0:Tyes-253----0
PMAR167539:0:Tyes-265----0
PMAR167540:0:Tyes-253----0
PMAR167542:0:Tyes-261----0
PMAR167546:0:Tyes-247----0
PMAR167555:0:Tyes-329----0
PMAR59920:0:Tno-325----0
PMAR74546:0:Tyes-255----0
PMAR74547:0:Tyes-1102---0322
PMAR93060:0:Tyes-258----0
PMEN399739:0:Tyes1965304
PMOB403833:0:Tyes-426----0
PMUL272843:1:Tyes1-54203
PNAP365044:8:Tyes-0688---1381
PPEN278197:0:Tyes-----0-
PPRO298386:2:Tyes3-0124-
PPUT160488:0:Tno8035796
PPUT351746:0:Tyes90357106
PPUT76869:0:Tno9035-116
PRUM264731:0:Tyes-1808---0351
PSP117:0:Tyes-1235---0-
PSP296591:2:Tyes-7350---3673
PSP312153:0:Tyes--01753--1752
PSP56811:2:Tyes1640-254162261-
PSTU379731:0:Tyes-035796
PSYR205918:0:Tyes-07675737074
PSYR223283:2:Tyes-048494850485248554851
PTHE370438:0:Tyes-----0-
PTOR263820:0:Tyes-0----499
RCAS383372:0:Tyes-0----2132
RDEN375451:4:Tyes--00-1855-
RETL347834:5:Tyes--500500-0-
REUT264198:3:Tyes-2867-0--2
REUT381666:2:Tyes-3022-0--2
RFER338969:1:Tyes-29331490---0
RLEG216596:6:Tyes-019931993-1408-
RMET266264:2:Tyes-3034----0
RPAL258594:0:Tyes-360100-4215-
RPAL316055:0:Tyes4284118000-4328-
RPAL316056:0:Tyes-130300-4552-
RPAL316057:0:Tyes-129200-3760-
RPAL316058:0:Tyes4116339100-3942-
RPOM246200:0:Tyes-0-----
RPOM246200:1:Tyes--453453-0-
RRUB269796:1:Tyes-196126162616-0-
RSAL288705:0:Tyes-524----0
RSOL267608:1:Tyes-2847----0
RSP101510:3:Fyes-0----4203
RSP357808:0:Tyes-0-----
RSPH272943:4:Tyes-72600-418-
RSPH349101:2:Tno-72800-407-
RSPH349102:5:Tyes--25782578-0-
RXYL266117:0:Tyes-1842---0-
SAGA205921:0:Tno-----0-
SAGA208435:0:Tno-----0-
SAGA211110:0:Tyes-----01297
SALA317655:1:Tyes-0801801---
SARE391037:0:Tyes-264----0
SAUR158878:1:Tno-0---13-
SAUR158879:1:Tno-7---200
SAUR196620:0:Tno-7---200
SAUR273036:0:Tno-7---190
SAUR282458:0:Tno-7---200
SAUR282459:0:Tno-7---200
SAUR359786:1:Tno-7---200
SAUR359787:1:Tno-7---210
SAUR367830:3:Tno-7---190
SAUR418127:0:Tyes-7---200
SAUR426430:0:Tno-7---190
SAUR93061:0:Fno-7---220
SAUR93062:1:Tno-7---190
SAVE227882:1:Fyes-0---9081483
SBAL399599:3:Tyes3882387838793880388138840
SBAL402882:1:Tno3736373237333734373537370
SBOY300268:1:Tyes1654203
SCO:2:Fyes-2315---0794
SDEG203122:0:Tyes3209032053205-32103206
SDEN318161:0:Tyes154320-
SDYS300267:1:Tyes1654203
SELO269084:0:Tyes-158318321832-01202
SENT209261:0:Tno5012473
SENT220341:0:Tno5012473
SENT295319:0:Tno5012473
SENT321314:2:Tno5012463
SENT454169:2:Tno6023574
SEPI176279:1:Tyes-0---13-
SEPI176280:0:Tno-0---14-
SERY405948:0:Tyes-0-----
SFLE198214:0:Tyes5012473
SFLE373384:0:Tno5012463
SGLO343509:3:Tyes5012463
SGOR29390:0:Tyes------0
SHAE279808:0:Tyes-13---0-
SHAL458817:0:Tyes8448408418428438510
SHIGELLA:0:Tno5012473
SLAC55218:1:Fyes-0104104-745-
SLOI323850:0:Tyes7307267277287297310
SMED366394:3:Tyes-018391839-1441-
SMEL266834:2:Tyes-016701670-1231-
SMUT210007:0:Tyes-----01423
SONE211586:1:Tyes7437477467457447420
SPEA398579:0:Tno1668166316641665166616710
SPNE1313:0:Tyes-----0-
SPNE170187:0:Tyes-----0-
SPNE171101:0:Tno-----0-
SPNE487213:0:Tno-----0-
SPNE487214:0:Tno-----0-
SPNE488221:0:Tno-----0-
SPRO399741:1:Tyes5012463
SRUB309807:1:Tyes-0---14185
SSAP342451:2:Tyes-0-----
SSED425104:0:Tyes1980197619771978197919870
SSON300269:1:Tyes5012463
SSP1131:0:Tyes-414----0
SSP1148:0:Tyes-183900-2121741
SSP292414:2:Tyes-237200-1874-
SSP321327:0:Tyes-102600-1351-
SSP321332:0:Tyes-733376376-0-
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