CANDIDATE ID: 294

CANDIDATE ID: 294

NUMBER OF GENES: 7
AVERAGE SCORE:    9.9937890e-1 (range=[0.0,1.0])
AVERAGE MINIMUM BLAST P-VAL:    1.0000000e+0

Gene List
List of organisms containing most genes from the group
    Phylogenetic tree highlighting these organisms (opens new page)
List of organisms containing very few or no genes from the group
List of organisms enriched for group
List of organisms depleted for group
Phylogenetic profile similarity with known pathways
Pairwise genome context scores
Pairwise Blast scores
Pathway or protein complex matches in target organism
Genome context matrix
    Genes and their orthologs in genome browser BioCyc pages



GENE LIST:

- G7580 (yqiB) (b3033)
   Products of gene:
     - G7580-MONOMER (predicted dehydrogenase)

- G7579 (cpdA) (b3032)
   Products of gene:
     - G7579-MONOMER (cAMP phosphodiesterase)
       Reactions:
        cyclic-AMP + H2O  =  AMP + H+

- G7578 (yqiA) (b3031)
   Products of gene:
     - G7578-MONOMER (esterase)

- EG12633 (nudF) (b3034)
   Products of gene:
     - EG12633-MONOMER (ADP- sugar pyrophosphatase)
     - CPLX0-3721 (ADP-sugar pyrophosphatase)
       Reactions:
        ADP-ribose + H2O  ->  AMP + D-ribose-5-phosphate + 2 H+
        an ADP-sugar + H2O  ->  AMP + an alpha-D-aldose-1-phosphate + 2 H+

- EG11009 (tolC) (b3035)
   Products of gene:
     - EG11009-MONOMER (TolC outer membrane channel)
     - TRANS-CPLX-204 (MdtEF-Tolc multidrug efflux transport system)
       Reactions:
        multidrug[cytosol] + H+[periplasmic space]  ->  multidrug[extracellular space] + H+[cytosol]
     - CPLX0-3932 (AcrAD-TolC multidrug efflux transport system)
       Reactions:
        multidrug[cytosol] + H+[periplasmic space]  ->  multidrug[extracellular space] + H+[cytosol]
     - CPLX0-5 (EntS-TolC Enterobactin Efflux Transport System)
       Reactions:
        enterobactin[cytoplasm] + H+[extracellular space]  ->  enterobactin[extracellular space] + H+[cytoplasm]
     - TRANS-CPLX-202 (MdtABC-TolC multidrug efflux transport system)
       Reactions:
        multidrug[cytosol] + H+[periplasmic space]  ->  multidrug[extracellular space] + H+[cytosol]
     - CPLX0-2161 (EmrKY-TolC putative multidrug efflux transport system)
       Reactions:
        multidrug[cytosol] + H+[periplasmic space]  ->  multidrug[extracellular space] + H+[cytosol]
     - CPLX0-2141 (AcrEF-TolC multidrug efflux transport system)
       Reactions:
        multidrug[cytosol] + H+[periplasmic space]  ->  multidrug[extracellular space] + H+[cytosol]
     - CPLX0-2121 (EmrAB-TolC multidrug efflux transport system)
       Reactions:
        multidrug[cytosol] + H+[periplasmic space]  ->  multidrug[extracellular space] + H+[cytosol]
     - TRANS-CPLX-201 (AcrAB-TolC multidrug efflux transport system)
       Reactions:
        multidrug[cytosol] + H+[periplasmic space]  ->  multidrug[extracellular space] + H+[cytosol]
     - TRANS-200-CPLX (MacAB-TolC Macrolide Efflux Transport System)
       Reactions:
        a macrolide antibiotic[cytosol] + ATP + H2O  ->  a macrolide antibiotic[extracellular space] + phosphate + ADP

- EG10687 (parE) (b3030)
   Products of gene:
     - EG10687-MONOMER (topoisomerase IV subunit B)
     - CPLX0-2424 (topoisomerase IV)

- EG10686 (parC) (b3019)
   Products of gene:
     - EG10686-MONOMER (topoisomerase IV subunit A)
     - CPLX0-2423 (dimer of topoisomerase IV subunit A)
     - CPLX0-2424 (topoisomerase IV)



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ORGANISMS CONTAINING AT LEAST 6 GENES FROM THE GROUP:

Total number of orgs: 103
Effective number of orgs (counting one per cluster within 468 clusters): 60

Organism list
Homologs in each organism in the list
Features enriched in organism list


Follow (ncbi) link, when present, to find the set of organism features for each organism
Org ID  Org Name  # genes in group found in org  
YPSE349747 ncbi Yersinia pseudotuberculosis IP 317587
YPSE273123 ncbi Yersinia pseudotuberculosis IP 329537
YPES386656 ncbi Yersinia pestis Pestoides F7
YPES377628 ncbi Yersinia pestis Nepal5167
YPES360102 ncbi Yersinia pestis Antiqua7
YPES349746 ncbi Yersinia pestis Angola7
YPES214092 ncbi Yersinia pestis CO927
YPES187410 ncbi Yersinia pestis KIM 107
YENT393305 ncbi Yersinia enterocolitica enterocolitica 80817
VVUL216895 ncbi Vibrio vulnificus CMCP67
VVUL196600 ncbi Vibrio vulnificus YJ0167
VPAR223926 ncbi Vibrio parahaemolyticus RIMD 22106337
VFIS312309 ncbi Vibrio fischeri ES1147
VCHO345073 ncbi Vibrio cholerae O3957
VCHO ncbi Vibrio cholerae O1 biovar El Tor str. N169617
TTUR377629 ncbi Teredinibacter turnerae T79017
STYP99287 ncbi Salmonella enterica enterica serovar Typhimurium str. LT27
SSP94122 ncbi Shewanella sp. ANA-37
SSON300269 ncbi Shigella sonnei Ss0467
SSED425104 ncbi Shewanella sediminis HAW-EB37
SPRO399741 ncbi Serratia proteamaculans 5687
SPEA398579 ncbi Shewanella pealeana ATCC 7003457
SONE211586 ncbi Shewanella oneidensis MR-17
SLOI323850 ncbi Shewanella loihica PV-47
SHIGELLA ncbi Shigella flexneri 2a str. 2457T7
SHAL458817 ncbi Shewanella halifaxensis HAW-EB47
SGLO343509 ncbi Sodalis glossinidius morsitans7
SFLE373384 ncbi Shigella flexneri 5 str. 84017
SFLE198214 ncbi Shigella flexneri 2a str. 3017
SENT454169 ncbi Salmonella enterica enterica serovar Heidelberg str. SL4767
SENT321314 ncbi Salmonella enterica enterica serovar Choleraesuis str. SC-B677
SENT295319 ncbi Salmonella enterica enterica serovar Paratyphi A str. ATCC 91507
SENT220341 ncbi Salmonella enterica enterica serovar Typhi str. CT187
SENT209261 ncbi Salmonella enterica enterica serovar Typhi str. Ty27
SDYS300267 ncbi Shigella dysenteriae Sd1977
SDEN318161 ncbi Shewanella denitrificans OS2177
SDEG203122 ncbi Saccharophagus degradans 2-407
SBOY300268 ncbi Shigella boydii Sb2277
SBAL402882 ncbi Shewanella baltica OS1857
SBAL399599 ncbi Shewanella baltica OS1957
PSYR223283 ncbi Pseudomonas syringae pv. tomato str. DC30007
PSYR205918 ncbi Pseudomonas syringae pv. syringae B728a7
PSTU379731 ncbi Pseudomonas stutzeri A15017
PPUT76869 ncbi Pseudomonas putida GB-17
PPUT351746 ncbi Pseudomonas putida F17
PPUT160488 ncbi Pseudomonas putida KT24407
PPRO298386 ncbi Photobacterium profundum SS97
PMEN399739 ncbi Pseudomonas mendocina ymp7
PLUM243265 ncbi Photorhabdus luminescens laumondii TTO16
PING357804 ncbi Psychromonas ingrahamii 376
PHAL326442 ncbi Pseudoalteromonas haloplanktis TAC1257
PFLU220664 ncbi Pseudomonas fluorescens Pf-57
PFLU216595 ncbi Pseudomonas fluorescens SBW257
PFLU205922 ncbi Pseudomonas fluorescens Pf0-17
PENT384676 ncbi Pseudomonas entomophila L487
PATL342610 ncbi Pseudoalteromonas atlantica T6c7
PAER208964 ncbi Pseudomonas aeruginosa PAO17
PAER208963 ncbi Pseudomonas aeruginosa UCBPP-PA147
MSP400668 ncbi Marinomonas sp. MWYL16
MCAP243233 ncbi Methylococcus capsulatus Bath7
MAQU351348 ncbi Marinobacter aquaeolei VT86
KPNE272620 ncbi Klebsiella pneumoniae pneumoniae MGH 785787
HCHE349521 ncbi Hahella chejuensis KCTC 23967
ESP42895 Enterobacter sp.7
EFER585054 ncbi Escherichia fergusonii ATCC 354697
ECOO157 ncbi Escherichia coli O157:H7 EDL9337
ECOL83334 Escherichia coli O157:H77
ECOL585397 ncbi Escherichia coli ED1a7
ECOL585057 ncbi Escherichia coli IAI397
ECOL585056 ncbi Escherichia coli UMN0267
ECOL585055 ncbi Escherichia coli 559897
ECOL585035 ncbi Escherichia coli S887
ECOL585034 ncbi Escherichia coli IAI17
ECOL481805 ncbi Escherichia coli ATCC 87397
ECOL469008 ncbi Escherichia coli BL21(DE3)7
ECOL439855 ncbi Escherichia coli SMS-3-57
ECOL413997 ncbi Escherichia coli B str. REL6067
ECOL409438 ncbi Escherichia coli SE117
ECOL405955 ncbi Escherichia coli APEC O17
ECOL364106 ncbi Escherichia coli UTI897
ECOL362663 ncbi Escherichia coli 5367
ECOL331111 ncbi Escherichia coli E24377A7
ECOL316407 ncbi Escherichia coli K-12 substr. W31107
ECOL199310 ncbi Escherichia coli CFT0737
ECAR218491 ncbi Pectobacterium atrosepticum SCRI10437
CVIO243365 ncbi Chromobacterium violaceum ATCC 124726
CSAL290398 ncbi Chromohalobacter salexigens DSM 30437
CPSY167879 ncbi Colwellia psychrerythraea 34H7
CJAP155077 Cellvibrio japonicus7
BTHA271848 ncbi Burkholderia thailandensis E2646
BSP36773 Burkholderia sp.6
BPSE320373 ncbi Burkholderia pseudomallei 6686
BPSE320372 ncbi Burkholderia pseudomallei 1710b6
BPSE272560 ncbi Burkholderia pseudomallei K962436
BCEN331272 ncbi Burkholderia cenocepacia HI24246
BCEN331271 ncbi Burkholderia cenocepacia AU 10546
BAMB339670 ncbi Burkholderia ambifaria AMMD6
ASP62977 ncbi Acinetobacter sp. ADP16
ASAL382245 ncbi Aeromonas salmonicida salmonicida A4497
AHYD196024 Aeromonas hydrophila dhakensis7
AEHR187272 ncbi Alkalilimnicola ehrlichii MLHE-16
ABOR393595 ncbi Alcanivorax borkumensis SK27
AAVE397945 ncbi Acidovorax citrulli AAC00-16


Names of the homologs of the genes in the group in each of these orgs
  G7580   G7579   G7578   EG12633   EG11009   EG10687   EG10686   
YPSE349747 YPSIP31758_0575YPSIP31758_0576YPSIP31758_0577YPSIP31758_0574YPSIP31758_0573YPSIP31758_0578YPSIP31758_0581
YPSE273123 YPTB3398YPTB3397YPTB3396YPTB3399YPTB3400YPTB3395YPTB3392
YPES386656 YPDSF_0447YPDSF_0448YPDSF_0449YPDSF_0446YPDSF_0445YPDSF_0450YPDSF_0454
YPES377628 YPN_0523YPN_0524YPN_0525YPN_0522YPN_0521YPN_0526YPN_0529
YPES360102 YPA_3127YPA_3125YPA_3124YPA_3128YPA_3129YPA_3123YPA_3120
YPES349746 YPANGOLA_A0282YPANGOLA_A0281YPANGOLA_A0280YPANGOLA_A0283YPANGOLA_A0284YPANGOLA_A0279YPANGOLA_A0276
YPES214092 YPO0665YPO0666YPO0667YPO0664YPO0663YPO0668YPO0671
YPES187410 Y3514Y3513Y3512Y3515Y3516Y3511Y3507
YENT393305 YE3663YE3662YE3661YE3664YE3665YE3660YE3656
VVUL216895 VV1_0609VV1_0608VV1_0607VV1_0610VV1_0612VV1_0606VV1_0605
VVUL196600 VV0585VV0586VV0587VV0584VV0583VV0588VV0589
VPAR223926 VP0427VP0428VP0429VP0426VP0425VP0430VP0431
VFIS312309 VF2231VF2230VF2229VF2232VF2233VF2228VF2227
VCHO345073 VC0395_A2011VC0395_A2010VC0395_A2009VC0395_A2012VC0395_A2013VC0395_A2008VC0395_A2007
VCHO VC2434VC2433VC2432VC2435VC2436VC2431VC2430
TTUR377629 TERTU_3922TERTU_3921TERTU_3920TERTU_3923TERTU_3927TERTU_3919TERTU_3952
STYP99287 STM3184STM3183STM3182STM3185STM3186STM3181STM3174
SSP94122 SHEWANA3_0727SHEWANA3_0728SHEWANA3_0729SHEWANA3_0726SHEWANA3_0725SHEWANA3_0730SHEWANA3_0732
SSON300269 SSO_3171SSO_3170SSO_3169SSO_3172SSO_3173SSO_3168SSO_3161
SSED425104 SSED_0776SSED_0777SSED_0778SSED_0775SSED_0774SSED_0779SSED_0781
SPRO399741 SPRO_4266SPRO_4265SPRO_4264SPRO_4267SPRO_4268SPRO_4263SPRO_4259
SPEA398579 SPEA_3561SPEA_3560SPEA_3559SPEA_3562SPEA_3563SPEA_3558SPEA_3556
SONE211586 SO_3902SO_3901SO_3900SO_3903SO_3904SO_3899SO_3897
SLOI323850 SHEW_0546SHEW_0547SHEW_0548SHEW_0545SHEW_0544SHEW_0549SHEW_0551
SHIGELLA YQIBICCYQIAYQIETOLCPAREPARC
SHAL458817 SHAL_3655SHAL_3654SHAL_3653SHAL_3656SHAL_3657SHAL_3652SHAL_3650
SGLO343509 SG0268SG0269SG0270SG0267SG0266SG0271SG0275
SFLE373384 SFV_3078SFV_3077SFV_3076SFV_3079SFV_3080SFV_3075SFV_3068
SFLE198214 AAN44551.1AAN44550.1AAN44549.1AAN44552.1AAN44553.1AAN44548.1AAN44541.1
SENT454169 SEHA_C3435SEHA_C3434SEHA_C3433SEHA_C3436SEHA_C3437SEHA_C3432SEHA_C3424
SENT321314 SCH_3128SCH_3127SCH_3126SCH_3129SCH_3130SCH_3125SCH_3118
SENT295319 SPA3053SPA3052SPA3051SPA3054SPA3055SPA3050SPA3043
SENT220341 STY3362STY3361STY3360STY3363STY3364STY3359STY3351
SENT209261 T3105T3104T3103T3106T3107T3102T3095
SDYS300267 SDY_3207SDY_3208SDY_3209SDY_3206SDY_3205SDY_3210SDY_3218
SDEN318161 SDEN_3223SDEN_3222SDEN_3221SDEN_3224SDEN_3225SDEN_3220SDEN_3218
SDEG203122 SDE_0371SDE_0372SDE_0373SDE_0370SDE_0366SDE_0374SDE_0398
SBOY300268 SBO_2891SBO_2890SBO_2889SBO_2892SBO_2893SBO_2888SBO_2881
SBAL402882 SHEW185_0783SHEW185_0784SHEW185_0785SHEW185_0782SHEW185_0781SHEW185_0786SHEW185_0788
SBAL399599 SBAL195_0815SBAL195_0816SBAL195_0817SBAL195_0814SBAL195_0813SBAL195_0818SBAL195_0820
PSYR223283 PSPTO_4972PSPTO_4965PSPTO_4964PSPTO_4973PSPTO_4977PSPTO_4963PSPTO_4960
PSYR205918 PSYR_0548PSYR_0549PSYR_0550PSYR_0547PSYR_0543PSYR_0551PSYR_0554
PSTU379731 PST_3813PST_3812PST_3811PST_3814PST_0679PST_3810PST_3807
PPUT76869 PPUTGB1_4971PPUTGB1_4970PPUTGB1_4969PPUTGB1_4972PPUTGB1_4976PPUTGB1_4968PPUTGB1_4965
PPUT351746 PPUT_4794PPUT_4793PPUT_4792PPUT_4795PPUT_4799PPUT_4791PPUT_4788
PPUT160488 PP_4918PP_4917PP_4916PP_4919PP_4923PP_4915PP_4912
PPRO298386 PBPRA0452PBPRA0453PBPRA0454PBPRA0451PBPRA0450PBPRA0455PBPRA0456
PMEN399739 PMEN_0607PMEN_0606PMEN_0605PMEN_0608PMEN_0610PMEN_0604PMEN_0601
PLUM243265 PLU3952PLU3951PLU3953PLU3954PLU3950PLU3949
PING357804 PING_3358PING_3357PING_3359PING_3360PING_3354PING_0864
PHAL326442 PSHAA2590PSHAA2589PSHAA2588PSHAA2591PSHAA2592PSHAA2587PSHAA2585
PFLU220664 PFL_0542PFL_0543PFL_0544PFL_0541PFL_0537PFL_0545PFL_0548
PFLU216595 PFLU0496PFLU0497PFLU0498PFLU0495PFLU0491PFLU0499PFLU0501
PFLU205922 PFL_0496PFL_0497PFL_0498PFL_0495PFL_0491PFL_0499PFL_0503
PENT384676 PSEEN4972PSEEN4971PSEEN4970PSEEN4973PSEEN4979PSEEN4969PSEEN4966
PATL342610 PATL_0432PATL_0433PATL_0434PATL_0431PATL_0430PATL_0435PATL_0509
PAER208964 PA4970PA4969PA4968PA4971PA4974PA4967PA4964
PAER208963 PA14_65700PA14_65690PA14_65670PA14_65710PA14_65750PA14_65660PA14_65605
MSP400668 MMWYL1_3556MMWYL1_3555MMWYL1_3558MMWYL1_2883MMWYL1_3554MMWYL1_2836
MCAP243233 MCA_2528MCA_2085MCA_2284MCA_1477MCA_1277MCA_0820MCA_0821
MAQU351348 MAQU_0805MAQU_0806MAQU_0804MAQU_0802MAQU_2794MAQU_2787
KPNE272620 GKPORF_B2779GKPORF_B2778GKPORF_B2777GKPORF_B2780GKPORF_B2781GKPORF_B2776GKPORF_B2769
HCHE349521 HCH_05993HCH_05992HCH_05991HCH_05994HCH_05996HCH_05734HCH_05404
ESP42895 ENT638_3446ENT638_3445ENT638_3444ENT638_3447ENT638_3448ENT638_3443ENT638_3427
EFER585054 EFER_2974EFER_2973EFER_2972EFER_2975EFER_2976EFER_2971EFER_2965
ECOO157 YQIBICCYQIAYQIETOLCPAREPARC
ECOL83334 ECS3921ECS3920ECS3919ECS3922ECS3923ECS3918ECS3903
ECOL585397 ECED1_3699ECED1_3698ECED1_3697ECED1_3700ECED1_3701ECED1_3696ECED1_3678
ECOL585057 ECIAI39_3530ECIAI39_3529ECIAI39_3528ECIAI39_3531ECIAI39_3532ECIAI39_3527ECIAI39_3513
ECOL585056 ECUMN_3518ECUMN_3517ECUMN_3516ECUMN_3519ECUMN_3520ECUMN_3515ECUMN_3503
ECOL585055 EC55989_3449EC55989_3448EC55989_3447EC55989_3450EC55989_3451EC55989_3446EC55989_3436
ECOL585035 ECS88_3427ECS88_3426ECS88_3425ECS88_3428ECS88_3429ECS88_3424ECS88_3407
ECOL585034 ECIAI1_3181ECIAI1_3180ECIAI1_3179ECIAI1_3182ECIAI1_3183ECIAI1_3178ECIAI1_3168
ECOL481805 ECOLC_0664ECOLC_0665ECOLC_0666ECOLC_0663ECOLC_0662ECOLC_0667ECOLC_0678
ECOL469008 ECBD_0706ECBD_0707ECBD_0708ECBD_0705ECBD_0704ECBD_0709ECBD_0720
ECOL439855 ECSMS35_3328ECSMS35_3327ECSMS35_3326ECSMS35_3329ECSMS35_3330ECSMS35_3325ECSMS35_3310
ECOL413997 ECB_02905ECB_02904ECB_02903ECB_02906ECB_02907ECB_02902ECB_02891
ECOL409438 ECSE_3314ECSE_3313ECSE_3312ECSE_3315ECSE_3316ECSE_3311ECSE_3303
ECOL405955 APECO1_3380APECO1_3381APECO1_3382APECO1_3379APECO1_3378APECO1_3383APECO1_3400
ECOL364106 UTI89_C3467UTI89_C3466UTI89_C3465UTI89_C3468UTI89_C3469UTI89_C3464UTI89_C3446
ECOL362663 ECP_3125ECP_3124ECP_3123ECP_3126ECP_3127ECP_3122ECP_3108
ECOL331111 ECE24377A_3497ECE24377A_3496ECE24377A_3495ECE24377A_3498ECE24377A_3499ECE24377A_3494ECE24377A_3487
ECOL316407 ECK3024:JW3001:B3033ECK3023:JW3000:B3032ECK3022:JW2999:B3031ECK3025:JW3002:B3034ECK3026:JW5503:B3035ECK3021:JW2998:B3030ECK3010:JW2987:B3019
ECOL199310 C3779C3778C3777C3780C3781C3776C3760
ECAR218491 ECA0332ECA0333ECA0334ECA0331ECA0330ECA0335ECA0345
CVIO243365 CV_0835CV_0212CV_1399CV_3925CV_1113CV_0075
CSAL290398 CSAL_2555CSAL_2554CSAL_2545CSAL_2556CSAL_2630CSAL_2544CSAL_2543
CPSY167879 CPS_4179CPS_4178CPS_4177CPS_4180CPS_4181CPS_4176CPS_4171
CJAP155077 CJA_2907CJA_2905CJA_2904CJA_2908CJA_2913CJA_2903CJA_3132
BTHA271848 BTH_I2835BTH_I1169BTH_II0273BTH_II0056BTH_I0940BTH_I0941
BSP36773 BCEP18194_A4339BCEP18194_A3693BCEP18194_A4044BCEP18194_B1841BCEP18194_A5699BCEP18194_A5698
BPSE320373 BURPS668_1405BURPS668_3460BURPS668_A2947BURPS668_A1822BURPS668_1137BURPS668_1138
BPSE320372 BURPS1710B_A1630BURPS1710B_A3774BURPS1710B_B1384BURPS1710B_B0360BURPS1710B_A1367BURPS1710B_A1368
BPSE272560 BPSL1299BPSL2978BPSS2045BPSS1287BPSL1069BPSL1070
BCEN331272 BCEN2424_5928BCEN2424_0611BCEN2424_0942BCEN2424_4184BCEN2424_2360BCEN2424_2359
BCEN331271 BCEN_5563BCEN_0128BCEN_0463BCEN_4182BCEN_1748BCEN_1747
BAMB339670 BAMB_1113BAMB_0512BAMB_0802BAMB_3585BAMB_2396BAMB_2395
ASP62977 ACIAD0274ACIAD3545ACIAD0275ACIAD0278ACIAD3544ACIAD0234
ASAL382245 ASA_0526ASA_0527ASA_0528ASA_0525ASA_0523ASA_0531ASA_0532
AHYD196024 AHA_3764AHA_3763AHA_3762AHA_3765AHA_3766AHA_3756AHA_3755
AEHR187272 MLG_1888MLG_0277MLG_1355MLG_2639MLG_0947MLG_0969
ABOR393595 ABO_2497ABO_2496ABO_2495ABO_2498ABO_2500ABO_2494ABO_2493
AAVE397945 AAVE_3458AAVE_0845AAVE_3332AAVE_2818AAVE_1340AAVE_1342


Organism features enriched in list (features available for 98 out of the 103 orgs in the list)
Feature    Pvalue       Num occurrences in list  Total num occurrences  
Arrangment:Chains 0.0000159392
Arrangment:Pairs 0.000502231112
Disease:Bubonic_plague 0.000019866
Disease:Dysentery 0.000019866
Disease:Gastroenteritis 2.098e-61013
Disease:Melioidosis 0.004629233
Endospores:No 0.008306626211
GC_Content_Range4:0-40 5.206e-192213
GC_Content_Range4:40-60 1.487e-1573224
GC_Content_Range7:30-40 1.617e-132166
GC_Content_Range7:40-50 0.001117831117
GC_Content_Range7:50-60 2.244e-1042107
Genome_Size_Range5:2-4 2.038e-126197
Genome_Size_Range5:4-6 4.435e-2374184
Genome_Size_Range5:6-10 0.00013681847
Genome_Size_Range9:3-4 0.0084313677
Genome_Size_Range9:4-5 3.695e-83696
Genome_Size_Range9:5-6 7.923e-113888
Genome_Size_Range9:6-8 4.246e-61838
Gram_Stain:Gram_Neg 8.511e-2093333
Habitat:Host-associated 0.004204024206
Habitat:Multiple 0.000181245178
Habitat:Specialized 0.0024261253
Motility:No 9.160e-104151
Motility:Yes 1.039e-1479267
Oxygen_Req:Anaerobic 2.353e-81102
Oxygen_Req:Facultative 4.164e-1467201
Pathogenic_in:Human 0.003545547213
Pathogenic_in:No 0.000491424226
Shape:Coccus 1.537e-6182
Shape:Rod 8.232e-1489347
Temp._range:Mesophilic 0.005392788473
Temp._range:Psychrophilic 0.000987169
Temp._range:Thermophilic 0.0097730135



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ORGANISMS CONTAINING AT MOST 1 GENES FROM THE GROUP:

Total number of orgs: 223
Effective number of orgs (counting one per cluster within 468 clusters): 183

Organism list
Homologs in each organism in the list
Features enriched in organism list


Follow (ncbi) link, when present, to find the set of organism features for each organism
Org ID  Org Name  # genes in group found in org  
WPIP955 Wolbachia pipientis1
WPIP80849 Wolbachia endosymbiont of Brugia malayi0
UURE95667 Ureaplasma urealyticum serovar 130
UURE95664 Ureaplasma urealyticum serovar 100
UPAR505682 ncbi Ureaplasma parvum serovar 3 str. ATCC 278150
TWHI218496 ncbi Tropheryma whipplei TW08/270
TWHI203267 ncbi Tropheryma whipplei Twist0
TVOL273116 ncbi Thermoplasma volcanium GSS11
TPEN368408 ncbi Thermofilum pendens Hrk 50
TPAL243276 ncbi Treponema pallidum pallidum Nichols0
TKOD69014 ncbi Thermococcus kodakarensis KOD11
TFUS269800 ncbi Thermobifida fusca YX1
TERY203124 ncbi Trichodesmium erythraeum IMS1010
TELO197221 ncbi Thermosynechococcus elongatus BP-11
TDEN243275 ncbi Treponema denticola ATCC 354050
TACI273075 ncbi Thermoplasma acidophilum DSM 17281
STRO369723 ncbi Salinispora tropica CNB-4401
STOK273063 ncbi Sulfolobus tokodaii 71
STHE322159 ncbi Streptococcus thermophilus LMD-90
STHE299768 ncbi Streptococcus thermophilus CNRZ10660
STHE264199 ncbi Streptococcus thermophilus LMG 183110
SSUI391296 ncbi Streptococcus suis 98HAH331
SSP84588 ncbi Synechococcus sp. WH 81021
SSP64471 ncbi Synechococcus sp. CC93110
SSP321332 ncbi Synechococcus sp. JA-2-3Ba(2-13)1
SSP1148 ncbi Synechocystis sp. PCC 68031
SSP1131 Synechococcus sp. CC96051
SSOL273057 ncbi Sulfolobus solfataricus P21
SPYO370554 ncbi Streptococcus pyogenes MGAS107501
SPYO370553 ncbi Streptococcus pyogenes MGAS20961
SPYO370552 ncbi Streptococcus pyogenes MGAS102700
SPYO370551 ncbi Streptococcus pyogenes MGAS94291
SPYO319701 ncbi Streptococcus pyogenes MGAS61801
SPYO293653 ncbi Streptococcus pyogenes MGAS50051
SPYO286636 ncbi Streptococcus pyogenes MGAS103941
SPYO198466 ncbi Streptococcus pyogenes MGAS3150
SPYO193567 ncbi Streptococcus pyogenes SSI-11
SPYO186103 ncbi Streptococcus pyogenes MGAS82321
SPYO160490 ncbi Streptococcus pyogenes M1 GAS1
SPNE488221 ncbi Streptococcus pneumoniae 705851
SPNE487214 ncbi Streptococcus pneumoniae Hungary19A-61
SPNE487213 ncbi Streptococcus pneumoniae Taiwan19F-141
SPNE171101 ncbi Streptococcus pneumoniae R61
SPNE170187 ncbi Streptococcus pneumoniae G541
SPNE1313 Streptococcus pneumoniae1
SMUT210007 ncbi Streptococcus mutans UA1591
SMAR399550 ncbi Staphylothermus marinus F11
SGOR29390 Streptococcus gordonii Challis1
SFUM335543 ncbi Syntrophobacter fumaroxidans MPOB1
SAVE227882 ncbi Streptomyces avermitilis MA-46801
SAGA211110 ncbi Streptococcus agalactiae NEM3161
SAGA208435 ncbi Streptococcus agalactiae 2603V/R1
SAGA205921 ncbi Streptococcus agalactiae A9091
SACI330779 ncbi Sulfolobus acidocaldarius DSM 6391
RSP357808 ncbi Roseiflexus sp. RS-11
RSAL288705 ncbi Renibacterium salmoninarum ATCC 332091
RCAS383372 ncbi Roseiflexus castenholzii DSM 139411
RALB246199 Ruminococcus albus 81
PTOR263820 ncbi Picrophilus torridus DSM 97901
PMAR93060 ncbi Prochlorococcus marinus MIT 92151
PMAR74547 ncbi Prochlorococcus marinus MIT 93131
PMAR74546 ncbi Prochlorococcus marinus MIT 93120
PMAR59920 ncbi Prochlorococcus marinus NATL2A0
PMAR167555 ncbi Prochlorococcus marinus NATL1A0
PMAR167546 ncbi Prochlorococcus marinus MIT 93011
PMAR167542 ncbi Prochlorococcus marinus MIT 95150
PMAR167540 Prochlorococcus marinus pastoris MED4ax0
PMAR167539 ncbi Prochlorococcus marinus marinus CCMP13750
PMAR146891 ncbi Prochlorococcus marinus AS96011
PLUT319225 ncbi Chlorobium luteolum DSM 2731
PISL384616 ncbi Pyrobaculum islandicum DSM 41840
PINT246198 Prevotella intermedia 170
PHOR70601 ncbi Pyrococcus horikoshii OT31
PFUR186497 ncbi Pyrococcus furiosus DSM 36381
PDIS435591 ncbi Parabacteroides distasonis ATCC 85031
PCAR338963 ncbi Pelobacter carbinolicus DSM 23801
PAST100379 Onion yellows phytoplasma0
PARS340102 ncbi Pyrobaculum arsenaticum DSM 135141
PAER178306 ncbi Pyrobaculum aerophilum IM21
PACN267747 ncbi Propionibacterium acnes KPA1712020
PABY272844 ncbi Pyrococcus abyssi GE51
OTSU357244 ncbi Orientia tsutsugamushi Boryong0
NSP35761 Nocardioides sp.1
NSP103690 ncbi Nostoc sp. PCC 71201
NSEN222891 ncbi Neorickettsia sennetsu Miyayama0
NPHA348780 ncbi Natronomonas pharaonis DSM 21601
NGON242231 ncbi Neisseria gonorrhoeae FA 10901
MVAN350058 ncbi Mycobacterium vanbaalenii PYR-10
MTUB419947 ncbi Mycobacterium tuberculosis H37Ra1
MTUB336982 ncbi Mycobacterium tuberculosis F111
MTHE187420 ncbi Methanothermobacter thermautotrophicus Delta H0
MTBRV ncbi Mycobacterium tuberculosis H37Rv1
MTBCDC ncbi Mycobacterium tuberculosis CDC15511
MSYN262723 ncbi Mycoplasma synoviae 531
MSTA339860 ncbi Methanosphaera stadtmanae DSM 30910
MSP189918 ncbi Mycobacterium sp. KMS0
MSP164757 ncbi Mycobacterium sp. JLS0
MSP164756 ncbi Mycobacterium sp. MCS0
MSME246196 ncbi Mycobacterium smegmatis MC2 1551
MSED399549 ncbi Metallosphaera sedula DSM 53481
MPUL272635 ncbi Mycoplasma pulmonis UAB CTIP0
MPNE272634 ncbi Mycoplasma pneumoniae M1290
MPEN272633 ncbi Mycoplasma penetrans HF-20
MMYC272632 ncbi Mycoplasma mycoides mycoides SC str. PG10
MMOB267748 ncbi Mycoplasma mobile 163K0
MMAZ192952 ncbi Methanosarcina mazei Go11
MMAR444158 ncbi Methanococcus maripaludis C60
MMAR426368 ncbi Methanococcus maripaludis C70
MMAR402880 ncbi Methanococcus maripaludis C50
MMAR267377 ncbi Methanococcus maripaludis S20
MLEP272631 ncbi Mycobacterium leprae TN1
MLAB410358 ncbi Methanocorpusculum labreanum Z0
MKAN190192 ncbi Methanopyrus kandleri AV191
MJAN243232 ncbi Methanocaldococcus jannaschii DSM 26610
MHYO295358 ncbi Mycoplasma hyopneumoniae 2321
MHYO262722 ncbi Mycoplasma hyopneumoniae 74481
MHYO262719 ncbi Mycoplasma hyopneumoniae J1
MHUN323259 ncbi Methanospirillum hungatei JF-11
MGIL350054 ncbi Mycobacterium gilvum PYR-GCK0
MGEN243273 ncbi Mycoplasma genitalium G370
MFLO265311 ncbi Mesoplasma florum L10
MCAP340047 ncbi Mycoplasma capricolum capricolum ATCC 273430
MBOV410289 ncbi Mycobacterium bovis BCG str. Pasteur 1173P21
MBOV233413 ncbi Mycobacterium bovis AF2122/971
MBAR269797 ncbi Methanosarcina barkeri Fusaro1
MAVI243243 ncbi Mycobacterium avium 1040
MART243272 ncbi Mycoplasma arthritidis 158L3-11
MAER449447 ncbi Microcystis aeruginosa NIES-8431
MAEO419665 ncbi Methanococcus aeolicus Nankai-30
MACE188937 ncbi Methanosarcina acetivorans C2A1
MABS561007 ncbi Mycobacterium abscessus ATCC 199770
LSAK314315 ncbi Lactobacillus sakei sakei 23K1
LREU557436 ncbi Lactobacillus reuteri DSM 200160
LMON265669 ncbi Listeria monocytogenes 4b F23651
LMON169963 ncbi Listeria monocytogenes EGD-e1
LMES203120 ncbi Leuconostoc mesenteroides mesenteroides ATCC 82931
LLAC272623 ncbi Lactococcus lactis lactis Il14031
LLAC272622 ncbi Lactococcus lactis cremoris SK111
LJOH257314 ncbi Lactobacillus johnsonii NCC 5330
LINT363253 ncbi Lawsonia intracellularis PHE/MN1-001
LINT267671 ncbi Leptospira interrogans serovar Copenhageni str. Fiocruz L1-1300
LINT189518 ncbi Leptospira interrogans serovar Lai str. 566010
LINN272626 ncbi Listeria innocua Clip112621
LHEL405566 ncbi Lactobacillus helveticus DPC 45710
LGAS324831 ncbi Lactobacillus gasseri ATCC 333230
LCAS321967 ncbi Lactobacillus casei ATCC 3340
LBRE387344 ncbi Lactobacillus brevis ATCC 3671
LBOR355277 ncbi Leptospira borgpetersenii serovar Hardjo-bovis JB1970
LBOR355276 ncbi Leptospira borgpetersenii serovar Hardjo-bovis L5500
LBIF456481 ncbi Leptospira biflexa serovar Patoc strain Patoc 1 (Paris)0
LBIF355278 ncbi Leptospira biflexa serovar Patoc strain Patoc 1 (Ames)0
LACI272621 ncbi Lactobacillus acidophilus NCFM0
IHOS453591 ncbi Ignicoccus hospitalis KIN4/I0
HWAL362976 ncbi Haloquadratum walsbyi DSM 167901
HSP64091 ncbi Halobacterium sp. NRC-11
HMUK485914 ncbi Halomicrobium mukohataei DSM 122861
HMAR272569 ncbi Haloarcula marismortui ATCC 430491
HBUT415426 ncbi Hyperthermus butylicus DSM 54561
HAUR316274 ncbi Herpetosiphon aurantiacus ATCC 237790
GVIO251221 ncbi Gloeobacter violaceus PCC 74211
GFOR411154 ncbi Gramella forsetii KT08030
FSUC59374 ncbi Fibrobacter succinogenes succinogenes S851
FSP106370 ncbi Frankia sp. CcI31
FNUC190304 ncbi Fusobacterium nucleatum nucleatum ATCC 255861
FNOD381764 ncbi Fervidobacterium nodosum Rt17-B11
FJOH376686 ncbi Flavobacterium johnsoniae UW1011
ERUM302409 ncbi Ehrlichia ruminantium Gardel1
ERUM254945 ncbi Ehrlichia ruminantium Welgevonden1
EFAE226185 ncbi Enterococcus faecalis V5831
ECHA205920 ncbi Ehrlichia chaffeensis Arkansas1
ECAN269484 ncbi Ehrlichia canis Jake1
DVUL882 ncbi Desulfovibrio vulgaris Hildenborough1
DRAD243230 ncbi Deinococcus radiodurans R11
DGEO319795 ncbi Deinococcus geothermalis DSM 113000
DDES207559 ncbi Desulfovibrio desulfuricans desulfuricans G201
CTRA471473 ncbi Chlamydia trachomatis L2b/UCH-1/proctitis0
CTRA471472 ncbi Chlamydia trachomatis 434/Bu0
CSUL444179 ncbi Candidatus Sulcia muelleri GWSS0
CPRO264201 ncbi Candidatus Protochlamydia amoebophila UWE251
CPNE182082 ncbi Chlamydophila pneumoniae TW-1830
CPNE138677 ncbi Chlamydophila pneumoniae J1380
CPNE115713 ncbi Chlamydophila pneumoniae CWL0290
CPNE115711 ncbi Chlamydophila pneumoniae AR390
CPEL335992 ncbi Candidatus Pelagibacter ubique HTCC10621
CMUR243161 ncbi Chlamydia muridarum Nigg0
CMIC443906 ncbi Clavibacter michiganensis michiganensis NCPPB 3821
CMIC31964 ncbi Clavibacter michiganensis sepedonicus1
CMET456442 ncbi Candidatus Methanoregula boonei 6A80
CMAQ397948 ncbi Caldivirga maquilingensis IC-1670
CKOR374847 ncbi Candidatus Korarchaeum cryptofilum OPF81
CHOM360107 ncbi Campylobacter hominis ATCC BAA-3811
CGLU196627 ncbi Corynebacterium glutamicum ATCC 130321
CFEL264202 ncbi Chlamydophila felis Fe/C-560
CEFF196164 ncbi Corynebacterium efficiens YS-3141
CCON360104 ncbi Campylobacter concisus 138261
CCHL340177 ncbi Chlorobium chlorochromatii CaD31
CCAV227941 ncbi Chlamydophila caviae GPIC0
CBLO291272 ncbi Candidatus Blochmannia pennsylvanicus BPEN0
CBLO203907 ncbi Candidatus Blochmannia floridanus0
CABO218497 ncbi Chlamydophila abortus S26/30
BTUR314724 ncbi Borrelia turicatae 91E1350
BTHE226186 ncbi Bacteroides thetaiotaomicron VPI-54821
BSP107806 ncbi Buchnera aphidicola APS (Acyrthosiphon pisum)0
BLON206672 ncbi Bifidobacterium longum NCC27051
BHER314723 ncbi Borrelia hermsii DAH0
BGAR290434 ncbi Borrelia garinii PBi1
BCIC186490 Candidatus Baumannia cicadellinicola0
BBUR224326 ncbi Borrelia burgdorferi B311
BBAC264462 ncbi Bdellovibrio bacteriovorus HD1000
BAPH372461 ncbi Buchnera aphidicola Cc (Cinara cedri)0
BAPH198804 ncbi Buchnera aphidicola Sg (Schizaphis graminum)0
BAFZ390236 ncbi Borrelia afzelii PKo0
AYEL322098 ncbi Aster yellows witches-broom phytoplasma AYWB0
AVAR240292 ncbi Anabaena variabilis ATCC 294131
AURANTIMONAS Aurantimonas manganoxydans SI85-9A10
APHA212042 ncbi Anaplasma phagocytophilum HZ0
APER272557 ncbi Aeropyrum pernix K10
ANAE240017 Actinomyces oris MG10
AMAR234826 ncbi Anaplasma marginale St. Maries0
ALAI441768 ncbi Acholeplasma laidlawii PG-8A0
AFUL224325 ncbi Archaeoglobus fulgidus DSM 43040
ACEL351607 ncbi Acidothermus cellulolyticus 11B0
ABAC204669 ncbi Candidatus Koribacter versatilis Ellin3451


Names of the homologs of the genes in the group in each of these orgs
  G7580   G7579   G7578   EG12633   EG11009   EG10687   EG10686   
WPIP955 WD_0068
WPIP80849
UURE95667
UURE95664
UPAR505682
TWHI218496
TWHI203267
TVOL273116 TVN0541
TPEN368408
TPAL243276
TKOD69014 TK1037
TFUS269800 TFU_0006
TERY203124
TELO197221 TLL0771
TDEN243275
TACI273075 TA1055
STRO369723 STROP_0008
STOK273063 ST2154
STHE322159
STHE299768
STHE264199
SSUI391296 SSU98_1593
SSP84588 SYNW0868OR1721
SSP64471
SSP321332 CYB_0131
SSP1148 SLL1054
SSP1131 SYNCC9605_1772
SSOL273057 SSO2167
SPYO370554 MGAS10750_SPY0636
SPYO370553 MGAS2096_SPY0615
SPYO370552
SPYO370551 MGAS9429_SPY0606
SPYO319701 M28_SPY0532
SPYO293653 M5005_SPY0553
SPYO286636 M6_SPY0573
SPYO198466
SPYO193567 SPS1378
SPYO186103 SPYM18_0795
SPYO160490 SPY0727
SPNE488221 SP70585_0851
SPNE487214 SPH_0908
SPNE487213 SPT_1393
SPNE171101 SPR0715
SPNE170187 SPN04193
SPNE1313 SPJ_0752
SMUT210007 SMU_1277
SMAR399550 SMAR_1181
SGOR29390 SGO_1432
SFUM335543 SFUM_0227
SAVE227882 SAV1247
SAGA211110 GBS0603
SAGA208435 SAG_0623
SAGA205921 SAK_0708
SACI330779 SACI_0013
RSP357808 ROSERS_0729
RSAL288705 RSAL33209_1528
RCAS383372 RCAS_0328
RALB246199 GRAORF_0678
PTOR263820 PTO1415
PMAR93060 P9215_19081
PMAR74547 PMT1555
PMAR74546
PMAR59920
PMAR167555
PMAR167546 P9301ORF_1864
PMAR167542
PMAR167540
PMAR167539
PMAR146891 A9601_18441
PLUT319225 PLUT_0682
PISL384616
PINT246198
PHOR70601 PH0104
PFUR186497 PF0088
PDIS435591 BDI_3352
PCAR338963 PCAR_0364
PAST100379
PARS340102 PARS_0518
PAER178306 PAE0563
PACN267747
PABY272844 PAB2278
OTSU357244
NSP35761 NOCA_2486
NSP103690 ALR5338
NSEN222891
NPHA348780 NP3498A
NGON242231 NGO1333
MVAN350058
MTUB419947 MRA_0815
MTUB336982 TBFG_10820
MTHE187420
MTBRV RV0805
MTBCDC MT0825
MSYN262723 MS53_0684
MSTA339860
MSP189918
MSP164757
MSP164756
MSME246196 MSMEG_3745
MSED399549 MSED_0724
MPUL272635
MPNE272634
MPEN272633
MMYC272632
MMOB267748
MMAZ192952 MM2420
MMAR444158
MMAR426368
MMAR402880
MMAR267377
MLEP272631 ML2210
MLAB410358
MKAN190192 MK1431
MJAN243232
MHYO295358 MHP270
MHYO262722 MHP7448_0109
MHYO262719 MHJ_0106
MHUN323259 MHUN_2834
MGIL350054
MGEN243273
MFLO265311
MCAP340047
MBOV410289 BCG_0857
MBOV233413 MB0828
MBAR269797 MBAR_A2804
MAVI243243
MART243272 MART0556
MAER449447 MAE_48230
MAEO419665
MACE188937 MA1583
MABS561007
LSAK314315 LSA0774
LREU557436
LMON265669 LMOF2365_0007
LMON169963 LMO0007
LMES203120 LEUM_0006
LLAC272623 L0283
LLAC272622 LACR_0984
LJOH257314
LINT363253 LI0075
LINT267671
LINT189518
LINN272626 LIN0007
LHEL405566
LGAS324831
LCAS321967
LBRE387344 LVIS_0006
LBOR355277
LBOR355276
LBIF456481
LBIF355278
LACI272621
IHOS453591
HWAL362976 HQ2652A
HSP64091 VNG0889G
HMUK485914 HMUK_2729
HMAR272569 RRNAC0456
HBUT415426 HBUT_0169
HAUR316274
GVIO251221 GLL3262
GFOR411154
FSUC59374 FSU1912
FSP106370 FRANCCI3_2836
FNUC190304 FN2126
FNOD381764 FNOD_0966
FJOH376686 FJOH_2220
ERUM302409 ERGA_CDS_08150
ERUM254945 ERWE_CDS_08250
EFAE226185 EF_0005
ECHA205920 ECH_1020
ECAN269484 ECAJ_0823
DVUL882 DVU_0003
DRAD243230 DR_1913
DGEO319795
DDES207559 DDE_0003
CTRA471473
CTRA471472
CSUL444179
CPRO264201 PC1075
CPNE182082
CPNE138677
CPNE115713
CPNE115711
CPEL335992 SAR11_0640
CMUR243161
CMIC443906 CMM_0386
CMIC31964 CMS0932
CMET456442
CMAQ397948
CKOR374847 KCR_0304
CHOM360107 CHAB381_1244
CGLU196627 CG0007
CFEL264202
CEFF196164 CE0006
CCON360104 CCC13826_1850
CCHL340177 CAG_0744
CCAV227941
CBLO291272
CBLO203907
CABO218497
BTUR314724
BTHE226186 BT_1212
BSP107806
BLON206672 BL0983
BHER314723
BGAR290434 BG0443
BCIC186490
BBUR224326 BB_0436
BBAC264462
BAPH372461
BAPH198804
BAFZ390236
AYEL322098
AVAR240292 AVA_2578
AURANTIMONAS
APHA212042
APER272557
ANAE240017
AMAR234826
ALAI441768
AFUL224325
ACEL351607
ABAC204669 ACID345_2011


Organism features enriched in list (features available for 208 out of the 223 orgs in the list)
Feature    Pvalue       Num occurrences in list  Total num occurrences  
Arrangment:Aggregates 0.001411089
Arrangment:Clusters 0.0047643117
Arrangment:Pairs 0.000060623112
Disease:Pharyngitis 0.000240488
Disease:Wide_range_of_infections 0.00001001111
Disease:bronchitis_and_pneumonitis 0.000240488
Endospores:No 5.956e-14117211
Endospores:Yes 8.079e-7453
GC_Content_Range4:0-40 1.639e-8107213
GC_Content_Range4:40-60 0.003286766224
GC_Content_Range4:60-100 0.000121034145
GC_Content_Range7:0-30 0.00002923047
GC_Content_Range7:30-40 0.000256377166
GC_Content_Range7:50-60 0.002020926107
GC_Content_Range7:60-70 0.000078330134
Genome_Size_Range5:0-2 3.063e-20103155
Genome_Size_Range5:4-6 1.041e-1426184
Genome_Size_Range9:0-1 1.443e-112627
Genome_Size_Range9:1-2 9.162e-1177128
Genome_Size_Range9:4-5 4.401e-71496
Genome_Size_Range9:5-6 4.953e-71288
Gram_Stain:Gram_Neg 4.103e-1968333
Gram_Stain:Gram_Pos 0.000429470150
Habitat:Host-associated 0.003734687206
Habitat:Multiple 0.000305346178
Habitat:Terrestrial 0.0028627431
Motility:No 2.809e-984151
Motility:Yes 1.101e-1157267
Optimal_temp.:- 0.008757980257
Optimal_temp.:30-35 0.008952367
Optimal_temp.:37 0.006862048106
Oxygen_Req:Aerobic 0.003932453185
Pathogenic_in:Animal 0.00676421566
Shape:Coccus 8.812e-64782
Shape:Filament 0.008952367
Shape:Irregular_coccus 0.00007861417
Shape:Oval 0.005602955
Shape:Rod 2.926e-1776347
Shape:Sphere 0.00001311619
Temp._range:Hyperthermophilic 0.00013391723



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ORGANISMS ENRICHED FOR GROUP:




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ORGANISMS DEPLETED FOR GROUP:




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PHYLOGENETIC PROFILE SIMILARITY WITH KNOWN PATHWAYS:

Pathways or complexes with absolute value of Pearson coefficient with respect to candidate larger than 0.4 are listed below
The candidate is assumed to exist in orgs listed in section List of organisms containing most genes from the group


Pathway or complex  # Orgs containing it  # of those orgs also containing candidate  Pearson Coeff  
AST-PWY (arginine degradation II (AST pathway))120840.7030
COBALSYN-PWY (adenosylcobalamin salvage from cobinamide I)195960.5941
GALACTITOLCAT-PWY (galactitol degradation)73560.5902
PWY0-1241 (ADP-L-glycero-β-D-manno-heptose biosynthesis)2181000.5794
LIPA-CORESYN-PWY (Lipid A-core biosynthesis)176860.5461
GLYCOCAT-PWY (glycogen degradation I)2461000.5244
ECASYN-PWY (enterobacterial common antigen biosynthesis)191860.5100
PWY-5148 (acyl-CoA hydrolysis)227940.5070
GLUCONSUPER-PWY (D-gluconate degradation)229940.5031
ENTNER-DOUDOROFF-PWY (Entner-Doudoroff pathway I)249970.4925
GLYCOLYSIS-E-D (superpathway of glycolysis and Entner-Doudoroff)249970.4925
PWY-46 (putrescine biosynthesis III)138700.4910
PWY-5861 (superpathway of demethylmenaquinone-8 biosynthesis)50390.4888
PWY-5755 (4-hydroxybenzoate biosynthesis II (bacteria and fungi))81510.4832
KDO-LIPASYN-PWY (KDO2-lipid A biosynthesis I)225900.4750
PWY0-1182 (trehalose degradation II (trehalase))70460.4710
PWY-6196 (serine racemization)102570.4687
GLUTAMINDEG-PWY (glutamine degradation I)191810.4632
PWY-5918 (heme biosynthesis I)272980.4620
3-HYDROXYPHENYLACETATE-DEGRADATION-PWY (4-hydroxyphenylacetate degradation)149700.4595
4AMINOBUTMETAB-PWY (superpathway of 4-aminobutyrate degradation)212850.4555
PWY-5111 (CMP-KDO biosynthesis II (from D-arabinose 5-phosphate))3001020.4532
LPSSYN-PWY (superpathway of lipopolysaccharide biosynthesis)91520.4521
GLUCARDEG-PWY (D-glucarate degradation I)152700.4514
GLUTDEG-PWY (glutamate degradation II)194800.4472
PWY0-1315 (L-lactaldehyde degradation (anaerobic))45340.4433
PWY0-981 (taurine degradation IV)106560.4424
PWY-4041 (γ-glutamyl cycle)279970.4421
HEME-BIOSYNTHESIS-II (heme biosynthesis from uroporphyrinogen-III I)286980.4398
PWY-6374 (vibriobactin biosynthesis)77460.4368
PHOSLIPSYN-PWY (phospholipid biosynthesis I)290980.4336
PWY0-1319 (CDP-diacylglycerol biosynthesis II)296990.4332
PWY4FS-7 (phosphatidylglycerol biosynthesis I (plastidic))291980.4321
LIPASYN-PWY (phospholipases)212820.4282
PWY-1269 (CMP-KDO biosynthesis I)3251030.4262
PWY-5913 (TCA cycle variation IV)301990.4257
PWY0-1353 (succinate to cytochrome bd oxidase electron transfer)178730.4168
PWY-5386 (methylglyoxal degradation I)305980.4112
PWY0-1329 (succinate to cytochrome bo oxidase electron transfer)96500.4085
GLUTATHIONESYN-PWY (glutathione biosynthesis)3391030.4074
LACTOSEUTIL-PWY (lactose degradation II)53350.4064
THREONINE-DEG2-PWY (threonine degradation II)214800.4060
PWY0-541 (cyclopropane fatty acid (CFA) biosynthesis)300960.4013
HEXITOLDEGSUPER-PWY (superpathway of hexitol degradation)37280.4001



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PAIRWISE GENOME CONTEXT SCORE MATRIX:

  G7579   G7578   EG12633   EG11009   EG10687   EG10686   
G75800.9995740.9995130.9995950.9994520.9994380.999273
G75790.999570.9995390.9993920.9993810.99913
G75780.999460.9993650.9995450.999244
EG126330.9995050.9989550.998786
EG110090.9993310.999067
EG106870.999842
EG10686



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PAIRWISE BLAST SCORES:

  G7580   G7579   G7578   EG12633   EG11009   EG10687   EG10686   
G75800.0f0------
G7579-0.0f0-----
G7578--0.0f0----
EG12633---0.0f0---
EG11009----0.0f0--
EG10687-----0.0f0-
EG10686------0.0f0



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PATHWAYS OR PROTEIN COMPLEX MATCHES IN TARGET ORG:

For each case, all genes involved in the pathway or complex are listed. For each gene we list: a tag indicating whether the gene is part of the candidate list or not, the average and the minimum scores of the gene to the candidate list, the gene name, and its product names.

- CPLX0-2424 (topoisomerase IV) (degree of match pw to cand: 1.000, degree of match cand to pw: 0.286, average score: 1.000)
  Genes in pathway or complex:
   *in cand* 0.9993 0.9988 EG10686 (parC) EG10686-MONOMER (topoisomerase IV subunit A)
   *in cand* 0.9995 0.9990 EG10687 (parE) EG10687-MONOMER (topoisomerase IV subunit B)
  Genes in candidate but not in this pathway or complex:
   *in cand* 0.9994 0.9991 EG11009 (tolC) EG11009-MONOMER (TolC outer membrane channel)
   *in cand* 0.9994 0.9988 EG12633 (nudF) EG12633-MONOMER (ADP- sugar pyrophosphatase)
   *in cand* 0.9995 0.9992 G7578 (yqiA) G7578-MONOMER (esterase)
   *in cand* 0.9995 0.9991 G7579 (cpdA) G7579-MONOMER (cAMP phosphodiesterase)
   *in cand* 0.9995 0.9993 G7580 (yqiB) G7580-MONOMER (predicted dehydrogenase)



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GENOME CONTEXT INFORMATION:

Each row corresponds to a replicon in an organism, each column to a gene in the candidate. The second column indicates whether the organims was included in the list used to compute the genome context scores or not. Some organisms are not included because they are phylogenetically too similar to others already in the list.
The number in the matrix indicate the position of the homolog of the gene in the replicon. All numbers are relative to the smaller one, which is assigned a position of zero. Two columns with the same number indicate that the two genes matched the same gene in that organism.

Genome browser links for gene clusters

The links below opens a genome browser BioCyc page for each cluster of genes in the target genome. These pages shows the central gene of the cluster in the target genome and its best homolog in the reference genomes, for the genomes that contain homologs for at least 75% of the genes in the group. Only one genome per phylogenetic cluster of organisms is shown, to keep the list smaller.

EG10687 EG11009 EG12633 G7578 G7579 G7580 (centered at G7580)
EG10686 (centered at EG10686)


ORG:REPLICON:CIRC?\GENE  IN REF LIST  G7580   G7579   G7578   EG12633   EG11009   EG10687   EG10686   
97/623193/623139/623287/623244/623391/623360/623
AAEO224324:0:Tyes-----290
AAUR290340:2:Tyes---1610-0-
AAVE397945:0:Tyes-2572024481943488490
ABAC204669:0:Tyes---0---
ABAU360910:0:Tyes-910626-69720
ABOR393595:0:Tyes4325710
ABUT367737:0:Tyes--0-1275--
ACAU438753:0:Tyes-667-0272124151905
ACRY349163:8:Tyes-1272-0-2573881
ADEH290397:0:Tyes----0-1387
AEHR187272:0:Tyes16000-10722347669690
AFER243159:0:Tyes----137901
AHYD196024:0:Tyes987101110
AMAR329726:9:Tyes-0---790-
AMET293826:0:Tyes---2471-01
AORE350688:0:Tyes---1593-01
APLE416269:0:Tyes-1406-1407-6750
APLE434271:0:Tno-1462-1463-6940
ASAL382245:5:Tyes3452089
ASP1667:3:Tyes-563-1538-0-
ASP232721:2:Tyes--2546-96802
ASP62928:0:Tyes--0-145424421
ASP62977:0:Tyes-383070394130690
ASP76114:2:Tyes--608-56903
AVAR240292:3:Tyes-0-----
BABO262698:0:Tno-----0-
BABO262698:1:Tno------0
BAMB339670:2:Tno----0--
BAMB339670:3:Tno-6160293-19331932
BAMB398577:3:Tno-5840--17671766
BAMY326423:0:Tyes---2163-01
BANT260799:0:Tno---4052-01
BANT261594:2:Tno---3963-01
BANT568206:2:Tyes---4190-01
BANT592021:2:Tno---4181-01
BBAC360095:0:Tyes----0232202
BBRO257310:0:Tyes-16301190-12580-
BBUR224326:21:Fno-----0-
BCAN483179:0:Tno-----0-
BCAN483179:1:Tno------0
BCEN331271:0:Tno-0-----
BCEN331271:1:Tno----0--
BCEN331271:2:Tno--0336-16421641
BCEN331272:1:Tyes-0-----
BCEN331272:2:Tyes----0--
BCEN331272:3:Tyes--0331-17461745
BCER226900:1:Tyes---4008-01
BCER288681:0:Tno---3909-01
BCER315749:1:Tyes---2645-01
BCER405917:1:Tyes---3937-01
BCER572264:1:Tno---4018-01
BCLA66692:0:Tyes---1831--0
BFRA272559:1:Tyes----0-559
BFRA295405:0:Tno----0-549
BGAR290434:2:Fyes-----0-
BHAL272558:0:Tyes---1600-01
BHEN283166:0:Tyes----81-0
BJAP224911:0:Fyes-1576-0191317902503
BLIC279010:0:Tyes---2438-01
BLON206672:0:Tyes---0---
BMAL243160:0:Tno----0--
BMAL243160:1:Tno-794267--01
BMAL320388:0:Tno----0--
BMAL320388:1:Tno-7740--277278
BMAL320389:0:Tyes----0--
BMAL320389:1:Tyes-02739--15551554
BMEL224914:0:Tno-----0-
BMEL224914:1:Tno------0
BMEL359391:0:Tno-----0-
BMEL359391:1:Tno------0
BOVI236:0:Tyes-----0-
BOVI236:1:Tyes------0
BPAR257311:0:Tno-22671962-20260-
BPER257313:0:Tyes-22541563--0-
BPET94624:0:Tyes-0411-3281827-
BPSE272560:0:Tyes---7510--
BPSE272560:1:Tyes-2341922--01
BPSE320372:0:Tno---10220--
BPSE320372:1:Tno-2572286--01
BPSE320373:0:Tno---11170--
BPSE320373:1:Tno-2552235--01
BPUM315750:0:Tyes---2114-01
BQUI283165:0:Tyes----77-0
BSP36773:1:Tyes----0--
BSP36773:2:Tyes-6590352-20452044
BSP376:0:Tyes-3136-0173514212284
BSUB:0:Tyes---2533-01
BSUI204722:0:Tyes-----0-
BSUI204722:1:Tyes------0
BSUI470137:0:Tno-----0-
BSUI470137:1:Tno------0
BTHA271848:0:Tno---2150--
BTHA271848:1:Tno-1854222--01
BTHE226186:0:Tyes----0--
BTHU281309:1:Tno---3791-01
BTHU412694:1:Tno---3589-01
BTRI382640:1:Tyes----159-0
BVIE269482:7:Tyes-5520274-18491848
BWEI315730:4:Tyes---3936-01
BXEN266265:0:Tyes----0--
BXEN266265:1:Tyes---0---
CACE272562:1:Tyes---3636-01
CAULO:0:Tyes---22460665253
CBEI290402:0:Tyes-----01
CBOT36826:1:Tno---1828-0-
CBOT441770:0:Tyes---1720-0-
CBOT441771:0:Tno---1721-0-
CBOT441772:1:Tno---1756-0-
CBOT498213:1:Tno---1786-0-
CBOT508765:1:Tyes-----01
CBOT515621:2:Tyes---1949-0-
CBOT536232:0:Tno---1906-0-
CBUR227377:0:Tyes-0-----
CBUR227377:1:Tyes----081739
CBUR360115:0:Tno-0-----
CBUR360115:1:Tno----701829
CBUR434922:1:Tno-0-----
CBUR434922:2:Tno----186418600
CCHL340177:0:Tyes----0--
CCON360104:2:Tyes-----0-
CCUR360105:0:Tyes----0-96
CDES477974:0:Tyes---1288-03
CDIF272563:1:Tyes---1245--0
CDIP257309:0:Tyes---1161-0-
CEFF196164:0:Fyes-----0-
CFET360106:0:Tyes----0-971
CGLU196627:0:Tyes-----0-
CHOM360107:1:Tyes------0
CHUT269798:0:Tyes---0--1441
CHYD246194:0:Tyes---0-12491248
CJAP155077:0:Tyes4215100227
CJEI306537:0:Tyes---915-0-
CJEJ192222:0:Tyes-----0986
CJEJ195099:0:Tno----40101130
CJEJ354242:2:Tyes-----0974
CJEJ360109:0:Tyes----14750702
CJEJ407148:0:Tno-----0995
CKLU431943:1:Tyes---1187-0-
CKOR374847:0:Tyes---0---
CMIC31964:2:Tyes---0---
CMIC443906:2:Tyes---0---
CNOV386415:0:Tyes---0-11971196
CPEL335992:0:Tyes----0--
CPER195102:1:Tyes---1936-01
CPER195103:0:Tno---2100-01
CPER289380:3:Tyes---1815-01
CPHY357809:0:Tyes-----01
CPRO264201:0:Fyes-----0-
CPSY167879:0:Tyes87691050
CRUT413404:0:Tyes-347---2450
CSAL290398:0:Tyes12112138810
CSP501479:5:Fyes-0-----
CSP501479:8:Fyes---10500406-
CSP78:2:Tyes---3128310911300
CTEP194439:0:Tyes---12041186-0
CTET212717:0:Tyes-----10
CVES412965:0:Tyes-314---2240
CVIO243365:0:Tyes-7721371367394710670
DARO159087:0:Tyes--2063-2079170
DDES207559:0:Tyes-----0-
DETH243164:0:Tyes---0--1123
DHAF138119:0:Tyes-----01
DNOD246195:0:Tyes---262-01
DOLE96561:0:Tyes----5290-
DPSY177439:2:Tyes----0-141
DRAD243230:3:Tyes------0
DRED349161:0:Tyes---1922-0-
DSHI398580:5:Tyes---2132-5420
DSP216389:0:Tyes---0--975
DSP255470:0:Tno---0--1147
DVUL882:1:Tyes-----0-
ECAN269484:0:Tyes----0--
ECAR218491:0:Tyes23410515
ECHA205920:0:Tyes----0--
ECOL199310:0:Tno1918172021160
ECOL316407:0:Tno1413121516110
ECOL331111:6:Tno1098111270
ECOL362663:0:Tno1716151819140
ECOL364106:1:Tno2120192223180
ECOL405955:2:Tyes2019182122170
ECOL409438:6:Tyes11109121380
ECOL413997:0:Tno1413121516110
ECOL439855:4:Tno1817161920150
ECOL469008:0:Tno23410516
ECOL481805:0:Tno23410516
ECOL585034:0:Tno11109121380
ECOL585035:0:Tno2019182122170
ECOL585055:0:Tno11109121380
ECOL585056:2:Tno1413121516110
ECOL585057:0:Tno1615141718130
ECOL585397:0:Tno1817161920150
ECOL83334:0:Tno1817161920150
ECOLI:0:Tno1413121516110
ECOO157:0:Tno1716151819140
EFAE226185:3:Tyes-----0-
EFER585054:1:Tyes987101160
ELIT314225:0:Tyes----21687630
ERUM254945:0:Tyes----0--
ERUM302409:0:Tno----0--
ESP42895:1:Tyes1918172021160
FALN326424:0:Tyes-2911----0
FJOH376686:0:Tyes---0---
FMAG334413:1:Tyes---882-01
FNOD381764:0:Tyes-----0-
FNUC190304:0:Tyes-----0-
FPHI484022:1:Tyes----5687400
FRANT:0:Tno----14560221
FSP106370:0:Tyes-0-----
FSP1855:0:Tyes---5137--0
FSUC59374:0:Tyes-0-----
FTUL351581:0:Tno----124011110
FTUL393011:0:Tno----11079940
FTUL393115:0:Tyes----14270215
FTUL401614:0:Tyes----120210500
FTUL418136:0:Tno----01531341
FTUL458234:0:Tno----114210270
GBET391165:0:Tyes----0-63
GKAU235909:1:Tyes---2411-01
GMET269799:1:Tyes----25190-
GOXY290633:5:Tyes----2400-0
GSUL243231:0:Tyes----14680-
GTHE420246:1:Tyes---2208-01
GURA351605:0:Tyes----339101
GVIO251221:0:Tyes---0---
HACI382638:1:Tyes-----0128
HARS204773:0:Tyes--1861-181820
HBUT415426:0:Tyes---0---
HCHE349521:0:Tyes5785775765795813200
HDUC233412:0:Tyes-0---105725
HHAL349124:0:Tyes192--0197919721971
HHEP235279:0:Tyes-----0510
HINF281310:0:Tyes-1-0-980979
HINF374930:0:Tyes-0-1-732-
HINF71421:0:Tno-1-0-11131114
HMAR272569:8:Tyes-----0-
HMOD498761:0:Tyes---0-592611
HMUK485914:1:Tyes-----0-
HNEP81032:0:Tyes----784-0
HPY:0:Tno-----0196
HPYL357544:1:Tyes-----0209
HPYL85963:0:Tno-----0187
HSAL478009:4:Tyes-----01
HSOM205914:1:Tyes-1-0-1918
HSOM228400:0:Tno-1-0-2118
HSP64091:2:Tno------0
HWAL362976:1:Tyes-----0-
ILOI283942:0:Tyes2--3410
JSP290400:1:Tyes-872-68-0-
JSP375286:0:Tyes--2287-225510
KPNE272620:2:Tyes1098111270
KRAD266940:2:Fyes-0-1912---
LBRE387344:2:Tyes------0
LCHO395495:0:Tyes--1547-0202199
LDEL321956:0:Tyes---608-0-
LDEL390333:0:Tyes---588-0-
LINN272626:1:Tno------0
LINT363253:3:Tyes-0-----
LLAC272622:5:Tyes-----0-
LLAC272623:0:Tyes-----0-
LMES203120:1:Tyes------0
LMON169963:0:Tno------0
LMON265669:0:Tyes------0
LPLA220668:0:Tyes-2727-2347--0
LPNE272624:0:Tno----802280
LPNE297245:1:Fno----902180
LPNE297246:1:Fyes----802305
LPNE400673:0:Tno----08689
LSAK314315:0:Tyes---0---
LSPH444177:1:Tyes---1723--0
LWEL386043:0:Tyes---1984--0
LXYL281090:0:Tyes-1488-0---
MACE188937:0:Tyes------0
MAER449447:0:Tyes-----0-
MAQU351348:2:Tyes34-2019701963
MART243272:0:Tyes------0
MBAR269797:1:Tyes------0
MBOV233413:0:Tno-0-----
MBOV410289:0:Tno-0-----
MBUR259564:0:Tyes-----01
MCAP243233:0:Tyes16211197138361642101
MEXT419610:0:Tyes---038032232161
MFLA265072:0:Tyes--0-1542--
MHUN323259:0:Tyes---0---
MHYO262719:0:Tyes-----0-
MHYO262722:0:Tno-----0-
MHYO295358:0:Tno-----0-
MKAN190192:0:Tyes-0-----
MLEP272631:0:Tyes-0-----
MLOT266835:2:Tyes-2724-07686006515
MMAG342108:0:Tyes---093820431278
MMAR368407:0:Tyes---821--0
MMAR394221:0:Tyes----0-563
MMAZ192952:0:Tyes------0
MPET420662:1:Tyes--2151-015121511
MSED399549:0:Tyes---0---
MSME246196:0:Tyes---0---
MSP266779:3:Tyes----5680115
MSP400668:0:Tyes717-716719477150
MSP409:2:Tyes-5916-0515136553620
MSUC221988:0:Tyes-837-838-30
MSYN262723:0:Tyes-----0-
MTBCDC:0:Tno-0-----
MTBRV:0:Tno-0-----
MTHE264732:0:Tyes---1466-01
MTHE349307:0:Tyes-----01
MTUB336982:0:Tno-0-----
MTUB419947:0:Tyes-0-----
MXAN246197:0:Tyes-----01
NARO279238:0:Tyes-115--0-2650
NEUR228410:0:Tyes---24760--
NEUT335283:2:Tyes---21430--
NFAR247156:2:Tyes-695-2044-0-
NGON242231:0:Tyes-----0-
NHAM323097:2:Tyes----0480409
NMEN122586:0:Tno----520-
NMEN122587:0:Tyes----510-
NMEN272831:0:Tno----470-
NMEN374833:0:Tno----550-
NMUL323848:3:Tyes---050--
NOCE323261:1:Tyes-0--238320472046
NPHA348780:2:Tyes-----0-
NSP103690:6:Tyes-0-----
NSP35761:1:Tyes---0---
NSP387092:0:Tyes--1267358-0508
NWIN323098:0:Tyes----0225492
OANT439375:4:Tyes-----0-
OANT439375:5:Tyes----0-300
OCAR504832:0:Tyes----2381590
OIHE221109:0:Tyes---1921-01
PABY272844:0:Tyes-0-----
PAER178306:0:Tyes---0---
PAER208963:0:Tyes65471030
PAER208964:0:Tno65471030
PARC259536:0:Tyes-170232--2310
PARS340102:0:Tyes---0---
PATL342610:0:Tyes23410578
PCAR338963:0:Tyes----0--
PCRY335284:1:Tyes-182258--2570
PDIS435591:0:Tyes----0--
PENT384676:0:Tyes65471130
PFLU205922:0:Tyes56740812
PFLU216595:1:Tyes56740810
PFLU220664:0:Tyes56740811
PFUR186497:0:Tyes-0-----
PGIN242619:0:Tyes----028-
PHAL326442:1:Tyes5436720
PHOR70601:0:Tyes-0-----
PING357804:0:Tyes-233823372339234023350
PLUM243265:0:Fyes-324510
PLUT319225:0:Tyes----0--
PMAR146891:0:Tyes-----0-
PMAR167546:0:Tyes-----0-
PMAR74547:0:Tyes-0-----
PMAR93060:0:Tyes-----0-
PMEN399739:0:Tyes6547930
PMOB403833:0:Tyes-----01064
PMUL272843:1:Tyes-650-651-10
PNAP365044:8:Tyes--2286-07274
PPEN278197:0:Tyes---1115-0-
PPRO298386:2:Tyes2341056
PPUT160488:0:Tno65471130
PPUT351746:0:Tyes65471130
PPUT76869:0:Tno65471130
PRUM264731:0:Tyes--0-941--
PSP117:0:Tyes---1654-0-
PSP296591:2:Tyes--0-56920702068
PSP312153:0:Tyes--713-0649-
PSP56811:2:Tyes-02109--21082047
PSTU379731:0:Tyes3117311631153118031143111
PSYR205918:0:Tyes56740811
PSYR223283:2:Tyes1254131730
PTHE370438:0:Tyes---1366-03
PTOR263820:0:Tyes------0
RAKA293614:0:Fyes----2132160
RALB246199:0:Tyes--0----
RBEL336407:0:Tyes-----01102
RBEL391896:0:Fno-----11970
RCAN293613:0:Fyes----1941970
RCAS383372:0:Tyes------0
RCON272944:0:Tno-----2180
RDEN375451:4:Tyes-2042-8563316320
RETL347834:5:Tyes---1458-01472
REUT264198:3:Tyes--2132-016231621
REUT381666:1:Tyes-0-----
REUT381666:2:Tyes--494-20820
RFEL315456:2:Tyes----9009030
RFER338969:1:Tyes--771-03837
RLEG216596:6:Tyes---1599-01615
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