CANDIDATE ID: 295

CANDIDATE ID: 295

NUMBER OF GENES: 7
AVERAGE SCORE:    9.9947005e-1 (range=[0.0,1.0])
AVERAGE MINIMUM BLAST P-VAL:    1.0000000e+0

Gene List
List of organisms containing most genes from the group
    Phylogenetic tree highlighting these organisms (opens new page)
List of organisms containing very few or no genes from the group
List of organisms enriched for group
List of organisms depleted for group
Phylogenetic profile similarity with known pathways
Pairwise genome context scores
Pairwise Blast scores
Pathway or protein complex matches in target organism
Genome context matrix
    Genes and their orthologs in genome browser BioCyc pages



GENE LIST:

- EG12395 (ybgE) (b0735)
   Products of gene:
     - EG12395-MONOMER (putative lipoprotein)

- EG11110 (ybgC) (b0736)
   Products of gene:
     - EG11110-MONOMER (esterase/thioesterase)
       Reactions:
        1,4-dihydroxy-2-naphthoyl-CoA + H2O  ->  1,4-dihydroxy-2-naphthoate + coenzyme A + H+
         In pathways
         PWY-5850 (PWY-5850)
         PWY-5840 (PWY-5840)
         PWY-5845 (PWY-5845)
         PWY-5860 (PWY-5860)
         PWY-5862 (PWY-5862)
         PWY-5838 (superpathway of menaquinone-8 biosynthesis I)
         PWY-5896 (PWY-5896)
         PWY-5897 (PWY-5897)
         PWY-5898 (PWY-5898)
         PWY-5899 (PWY-5899)
         ALL-CHORISMATE-PWY (superpathway of chorismate)
         PWY-5861 (PWY-5861)
         PWY-5863 (PWY-5863)
         PWY-5837 (1,4-dihydroxy-2-naphthoate biosynthesis I)
         PWY-5791 (PWY-5791)

- EG11011 (tolR) (b0738)
   Products of gene:
     - EG11011-MONOMER (TolR)
     - CPLX0-2201 (The Tol-Pal Cell Envelope Complex)
     - CPLX0-2221 (The Colicin A Import System)
     - CPLX0-2202 (Colicin S4 Transport System)

- EG11010 (tolQ) (b0737)
   Products of gene:
     - EG11010-MONOMER (TolQ)
     - CPLX0-2201 (The Tol-Pal Cell Envelope Complex)
     - CPLX0-2221 (The Colicin A Import System)
     - CPLX0-2202 (Colicin S4 Transport System)

- EG11008 (tolB) (b0740)
   Products of gene:
     - EG11008-MONOMER (TolB)
     - CPLX0-2201 (The Tol-Pal Cell Envelope Complex)
     - CPLX0-2221 (The Colicin A Import System)
     - CPLX0-2202 (Colicin S4 Transport System)

- EG11007 (tolA) (b0739)
   Products of gene:
     - EG11007-MONOMER (TolA)
     - CPLX0-2201 (The Tol-Pal Cell Envelope Complex)
     - CPLX0-2221 (The Colicin A Import System)
     - CPLX0-2202 (Colicin S4 Transport System)

- EG10684 (pal) (b0741)
   Products of gene:
     - EG10684-MONOMER (Pal)
     - CPLX0-2201 (The Tol-Pal Cell Envelope Complex)
     - CPLX0-2221 (The Colicin A Import System)
     - CPLX0-2202 (Colicin S4 Transport System)



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ORGANISMS CONTAINING AT LEAST 6 GENES FROM THE GROUP:

Total number of orgs: 76
Effective number of orgs (counting one per cluster within 468 clusters): 40

Organism list
Homologs in each organism in the list
Features enriched in organism list


Follow (ncbi) link, when present, to find the set of organism features for each organism
Org ID  Org Name  # genes in group found in org  
YPSE349747 ncbi Yersinia pseudotuberculosis IP 317587
YPSE273123 ncbi Yersinia pseudotuberculosis IP 329537
YPES386656 ncbi Yersinia pestis Pestoides F7
YPES377628 ncbi Yersinia pestis Nepal5167
YPES360102 ncbi Yersinia pestis Antiqua7
YPES349746 ncbi Yersinia pestis Angola7
YPES214092 ncbi Yersinia pestis CO927
YPES187410 ncbi Yersinia pestis KIM 107
YENT393305 ncbi Yersinia enterocolitica enterocolitica 80817
VVUL216895 ncbi Vibrio vulnificus CMCP66
VVUL196600 ncbi Vibrio vulnificus YJ0167
VPAR223926 ncbi Vibrio parahaemolyticus RIMD 22106337
VFIS312309 ncbi Vibrio fischeri ES1146
VCHO ncbi Vibrio cholerae O1 biovar El Tor str. N169617
STYP99287 ncbi Salmonella enterica enterica serovar Typhimurium str. LT27
SSP94122 ncbi Shewanella sp. ANA-36
SSON300269 ncbi Shigella sonnei Ss0467
SSED425104 ncbi Shewanella sediminis HAW-EB36
SPRO399741 ncbi Serratia proteamaculans 5687
SONE211586 ncbi Shewanella oneidensis MR-16
SLOI323850 ncbi Shewanella loihica PV-46
SHIGELLA ncbi Shigella flexneri 2a str. 2457T7
SHAL458817 ncbi Shewanella halifaxensis HAW-EB46
SGLO343509 ncbi Sodalis glossinidius morsitans6
SFLE373384 ncbi Shigella flexneri 5 str. 84017
SFLE198214 ncbi Shigella flexneri 2a str. 3017
SENT454169 ncbi Salmonella enterica enterica serovar Heidelberg str. SL4767
SENT321314 ncbi Salmonella enterica enterica serovar Choleraesuis str. SC-B677
SENT295319 ncbi Salmonella enterica enterica serovar Paratyphi A str. ATCC 91507
SENT220341 ncbi Salmonella enterica enterica serovar Typhi str. CT187
SENT209261 ncbi Salmonella enterica enterica serovar Typhi str. Ty27
SDYS300267 ncbi Shigella dysenteriae Sd1977
SDEN318161 ncbi Shewanella denitrificans OS2176
SBOY300268 ncbi Shigella boydii Sb2277
SBAL402882 ncbi Shewanella baltica OS1856
SBAL399599 ncbi Shewanella baltica OS1956
PPRO298386 ncbi Photobacterium profundum SS97
PMUL272843 ncbi Pasteurella multocida multocida Pm707
PLUM243265 ncbi Photorhabdus luminescens laumondii TTO16
PATL342610 ncbi Pseudoalteromonas atlantica T6c6
MSUC221988 ncbi Mannheimia succiniciproducens MBEL55E6
KPNE272620 ncbi Klebsiella pneumoniae pneumoniae MGH 785787
HSOM228400 ncbi Haemophilus somnus 23366
HSOM205914 ncbi Haemophilus somnus 129PT6
HINF71421 ncbi Haemophilus influenzae Rd KW206
HINF374930 ncbi Haemophilus influenzae PittEE6
HINF281310 ncbi Haemophilus influenzae 86-028NP6
HDUC233412 ncbi Haemophilus ducreyi 35000HP6
ESP42895 Enterobacter sp.7
EFER585054 ncbi Escherichia fergusonii ATCC 354697
ECOO157 ncbi Escherichia coli O157:H7 EDL9337
ECOL83334 Escherichia coli O157:H77
ECOL585397 ncbi Escherichia coli ED1a7
ECOL585057 ncbi Escherichia coli IAI397
ECOL585056 ncbi Escherichia coli UMN0267
ECOL585055 ncbi Escherichia coli 559897
ECOL585035 ncbi Escherichia coli S887
ECOL585034 ncbi Escherichia coli IAI17
ECOL481805 ncbi Escherichia coli ATCC 87397
ECOL469008 ncbi Escherichia coli BL21(DE3)7
ECOL439855 ncbi Escherichia coli SMS-3-57
ECOL413997 ncbi Escherichia coli B str. REL6067
ECOL409438 ncbi Escherichia coli SE117
ECOL405955 ncbi Escherichia coli APEC O17
ECOL364106 ncbi Escherichia coli UTI897
ECOL362663 ncbi Escherichia coli 5367
ECOL331111 ncbi Escherichia coli E24377A7
ECOL316407 ncbi Escherichia coli K-12 substr. W31107
ECOL199310 ncbi Escherichia coli CFT0737
ECAR218491 ncbi Pectobacterium atrosepticum SCRI10437
CPSY167879 ncbi Colwellia psychrerythraea 34H6
ASP62977 ncbi Acinetobacter sp. ADP16
ASAL382245 ncbi Aeromonas salmonicida salmonicida A4497
APLE434271 ncbi Actinobacillus pleuropneumoniae serovar 3 str. JL037
APLE416269 ncbi Actinobacillus pleuropneumoniae L206
AHYD196024 Aeromonas hydrophila dhakensis7


Names of the homologs of the genes in the group in each of these orgs
  EG12395   EG11110   EG11011   EG11010   EG11008   EG11007   EG10684   
YPSE349747 YPSIP31758_2873YPSIP31758_2872YPSIP31758_2870YPSIP31758_2871YPSIP31758_2868YPSIP31758_2869YPSIP31758_2867
YPSE273123 YPTB1154YPTB1155YPTB1157YPTB1156YPTB1159YPTB1158YPTB1160
YPES386656 YPDSF_2577YPDSF_2576YPDSF_2574YPDSF_2575YPDSF_2572YPDSF_2573YPDSF_2571
YPES377628 YPN_2879YPN_2878YPN_2876YPN_2877YPN_2874YPN_2875YPN_2873
YPES360102 YPA_0597YPA_0598YPA_0600YPA_0599YPA_0602YPA_0601YPA_0603
YPES349746 YPANGOLA_A1391YPANGOLA_A3047YPANGOLA_A1395YPANGOLA_A1394YPANGOLA_A1397YPANGOLA_A1396YPANGOLA_A1398
YPES214092 YPO1119YPO1120YPO1122YPO1121YPO1124YPO1123YPO1125
YPES187410 Y3060Y3059Y3057Y3058Y3055Y3056Y3054
YENT393305 YE2937YE2936YE2934YE2935YE2932YE2933YE2931
VVUL216895 VV1_2165VV1_2166VV1_2168VV1_2167VV1_2170VV1_2171
VVUL196600 VV2281VV2279VV2277VV2278VV2275VV2276VV2274
VPAR223926 VP1055VP1056VP1058VP1057VP1060VP1059VP1061
VFIS312309 VF0957VF0959VF0958VF0962VF0961VF0963
VCHO VC1841VC1840VC1838VC1839VC1836VC1837VC1835
STYP99287 STM0743STM0744STM0746STM0745STM0748STM0747STM0749
SSP94122 SHEWANA3_2535SHEWANA3_2533SHEWANA3_2534SHEWANA3_2531SHEWANA3_2532SHEWANA3_2530
SSON300269 SSO_0687SSO_0688SSO_0690SSO_0689SSO_0692SSO_0691SSO_0693
SSED425104 SSED_1853SSED_1855SSED_1854SSED_1857SSED_1856SSED_1858
SPRO399741 SPRO_1274SPRO_1275SPRO_1277SPRO_1276SPRO_1279SPRO_1278SPRO_1280
SONE211586 SO_2752SO_2750SO_2751SO_2748SO_2749SO_2747
SLOI323850 SHEW_1523SHEW_1525SHEW_1524SHEW_1527SHEW_1526SHEW_1528
SHIGELLA YBGEYBGCTOLRTOLQTOLBTOLAPAL
SHAL458817 SHAL_1687SHAL_1689SHAL_1688SHAL_1691SHAL_1690SHAL_1692
SGLO343509 SG0882SG0884SG0883SG0886SG0885SG0887
SFLE373384 SFV_0601SFV_0600SFV_0598SFV_0599SFV_0596SFV_0597SFV_0595
SFLE198214 AAN42206.1AAN42205.1AAN42203.1AAN42204.1AAN42201.1AAN42202.1AAN42200.1
SENT454169 SEHA_C0870SEHA_C0871SEHA_C0873SEHA_C0872SEHA_C0875SEHA_C0874SEHA_C0876
SENT321314 SCH_0747SCH_0748SCH_0750SCH_0749SCH_0752SCH_0751SCH_0753
SENT295319 SPA2000SPA1999SPA1997SPA1998SPA1995SPA1996SPA1994
SENT220341 STY0789STY0790STY0792STY0791STY0794STY0793STY0795
SENT209261 T2133T2132T2130T2131T2128T2129T2127
SDYS300267 SDY_0683SDY_0684SDY_0686SDY_0685SDY_0688SDY_0687SDY_0689
SDEN318161 SDEN_1390SDEN_1392SDEN_1391SDEN_1394SDEN_1393SDEN_1395
SBOY300268 SBO_0594SBO_0595SBO_0597SBO_0596SBO_0599SBO_0598SBO_0600
SBAL402882 SHEW185_1738SHEW185_1740SHEW185_1739SHEW185_1742SHEW185_1741SHEW185_1743
SBAL399599 SBAL195_1781SBAL195_1783SBAL195_1782SBAL195_1785SBAL195_1784SBAL195_1786
PPRO298386 PBPRA2555PBPRA2554PBPRA2552PBPRA2553PBPRA2550PBPRA2551PBPRA2549
PMUL272843 PM0972PM0971PM0969PM0970PM0967PM0968PM0966
PLUM243265 PLU1451PLU1453PLU1452PLU1455PLU1454PLU1456
PATL342610 PATL_2943PATL_2941PATL_2942PATL_2939PATL_2940PATL_2938
MSUC221988 MS0718MS0719MS0721MS0720MS0723MS0722
KPNE272620 GKPORF_B5168GKPORF_B4735GKPORF_B5171GKPORF_B5170GKPORF_B5173GKPORF_B5172GKPORF_B5174
HSOM228400 HSM_0131HSM_0133HSM_0132HSM_0135HSM_0134HSM_0136
HSOM205914 HS_0258HS_0260HS_0259HS_0262HS_0261HS_0263
HINF71421 HI_0386HI_0384HI_0385HI_0382HI_0383HI_0381
HINF374930 CGSHIEE_01070CGSHIEE_01080CGSHIEE_01075CGSHIEE_01090CGSHIEE_01085CGSHIEE_01095
HINF281310 NTHI0506NTHI0504NTHI0505NTHI0502NTHI0503NTHI0501
HDUC233412 HD_1779HD_1778HD_1776HD_1777HD_1773HD_1772
ESP42895 ENT638_1233ENT638_1234ENT638_1236ENT638_1235ENT638_1238ENT638_1237ENT638_1239
EFER585054 EFER_2369EFER_2368EFER_2366EFER_2367EFER_2364EFER_2365EFER_2363
ECOO157 YBGEYBGCTOLRTOLQTOLBTOLAPAL
ECOL83334 ECS0770ECS0771ECS0773ECS0772ECS0775ECS0774ECS0776
ECOL585397 ECED1_0702ECED1_0703ECED1_0705ECED1_0704ECED1_0707ECED1_0706ECED1_0708
ECOL585057 ECIAI39_0710ECIAI39_0711ECIAI39_0713ECIAI39_0712ECIAI39_0715ECIAI39_0714ECIAI39_0716
ECOL585056 ECUMN_0823ECUMN_0824ECUMN_0826ECUMN_0825ECUMN_0828ECUMN_0827ECUMN_0829
ECOL585055 EC55989_0720EC55989_0721EC55989_0723EC55989_0722EC55989_0725EC55989_0724EC55989_0726
ECOL585035 ECS88_0758ECS88_0759ECS88_0761ECS88_0760ECS88_0763ECS88_0762ECS88_0764
ECOL585034 ECIAI1_0710ECIAI1_0711ECIAI1_0713ECIAI1_0712ECIAI1_0715ECIAI1_0714ECIAI1_0716
ECOL481805 ECOLC_2920ECOLC_2919ECOLC_2917ECOLC_2918ECOLC_2915ECOLC_2916ECOLC_2914
ECOL469008 ECBD_2925ECBD_2924ECBD_2922ECBD_2923ECBD_2920ECBD_2921ECBD_2919
ECOL439855 ECSMS35_0758ECSMS35_0759ECSMS35_0761ECSMS35_0760ECSMS35_0763ECSMS35_0762ECSMS35_0764
ECOL413997 ECB_00695ECB_00696ECB_00698ECB_00697ECB_00700ECB_00699ECB_00701
ECOL409438 ECSE_0795ECSE_0796ECSE_0798ECSE_0797ECSE_0800ECSE_0799ECSE_0801
ECOL405955 APECO1_1346APECO1_1345APECO1_1343APECO1_1344APECO1_1341APECO1_1342APECO1_1340
ECOL364106 UTI89_C0731UTI89_C0732UTI89_C0734UTI89_C0733UTI89_C0736UTI89_C0735UTI89_C0738
ECOL362663 ECP_0746ECP_0747ECP_0749ECP_0748ECP_0751ECP_0750ECP_0752
ECOL331111 ECE24377A_0764ECE24377A_0765ECE24377A_0767ECE24377A_0766ECE24377A_0769ECE24377A_0768ECE24377A_0770
ECOL316407 ECK0724:JW0725:B0735ECK0725:JW0726:B0736ECK0727:JW0728:B0738ECK0726:JW0727:B0737ECK0729:JW5100:B0740ECK0728:JW0729:B0739ECK0730:JW0731:B0741
ECOL199310 C0814C0815C0817C0816C0819C0818C0821
ECAR218491 ECA1368ECA1369ECA1371ECA1370ECA1373ECA1372ECA1374
CPSY167879 CPS_1727CPS_1729CPS_1728CPS_1731CPS_1730CPS_1732
ASP62977 ACIAD2292ACIAD2618ACIAD2620ACIAD2619ACIAD2622ACIAD2623
ASAL382245 ASA_0740ASA_0741ASA_0743ASA_0742ASA_0745ASA_0744ASA_0746
APLE434271 APJL_0311APJL_0312APJL_0314APJL_0313APJL_0316APJL_0315APJL_0317
APLE416269 APL_0299APL_0301APL_0300APL_0303APL_0302APL_0304
AHYD196024 AHA_3643AHA_3642AHA_3640AHA_3641AHA_3638AHA_3639AHA_3637


Organism features enriched in list (features available for 73 out of the 76 orgs in the list)
Feature    Pvalue       Num occurrences in list  Total num occurrences  
Arrangment:Chains 0.0094945592
Arrangment:Pairs 6.942e-629112
Arrangment:Singles 0.000067251286
Disease:Bubonic_plague 3.203e-666
Disease:Dysentery 3.203e-666
Disease:Gastroenteritis 1.083e-71013
Disease:Urinary_tract_infection 0.006658134
Disease:chronic_bronchitis 0.001893033
Disease:otitis_media 0.006658134
Disease:sinusitis 0.006658134
GC_Content_Range4:0-40 1.528e-78213
GC_Content_Range4:40-60 9.209e-2265224
GC_Content_Range7:30-40 0.00009708166
GC_Content_Range7:40-50 0.000018129117
GC_Content_Range7:50-60 4.991e-1136107
Genome_Size_Range5:0-2 9.606e-74155
Genome_Size_Range5:2-4 3.380e-77197
Genome_Size_Range5:4-6 6.571e-2361184
Genome_Size_Range9:1-2 0.00004344128
Genome_Size_Range9:2-3 0.00163826120
Genome_Size_Range9:3-4 0.0001968177
Genome_Size_Range9:4-5 8.012e-93196
Genome_Size_Range9:5-6 3.509e-93088
Gram_Stain:Gram_Neg 2.668e-1872333
Motility:No 1.738e-64151
Motility:Yes 0.000017350267
Optimal_temp.:20-30 0.005460847
Optimal_temp.:28-30 0.005460847
Optimal_temp.:37 0.006683621106
Oxygen_Req:Aerobic 6.400e-112185
Oxygen_Req:Anaerobic 0.00004502102
Oxygen_Req:Facultative 1.794e-2968201
Pathogenic_in:Human 1.638e-747213
Pathogenic_in:No 1.917e-88226
Pathogenic_in:Rodent 0.005460847
Shape:Rod 7.232e-1268347
Temp._range:Mesophilic 0.001533968473



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ORGANISMS CONTAINING AT MOST 1 GENES FROM THE GROUP:

Total number of orgs: 303
Effective number of orgs (counting one per cluster within 468 clusters): 235

Organism list
Homologs in each organism in the list
Features enriched in organism list


Follow (ncbi) link, when present, to find the set of organism features for each organism
Org ID  Org Name  # genes in group found in org  
WPIP955 Wolbachia pipientis1
WPIP80849 Wolbachia endosymbiont of Brugia malayi0
UURE95667 Ureaplasma urealyticum serovar 130
UURE95664 Ureaplasma urealyticum serovar 100
UPAR505682 ncbi Ureaplasma parvum serovar 3 str. ATCC 278150
UMET351160 ncbi uncultured methanogenic archaeon RC-I0
TWHI218496 ncbi Tropheryma whipplei TW08/270
TWHI203267 ncbi Tropheryma whipplei Twist0
TVOL273116 ncbi Thermoplasma volcanium GSS10
TTHE300852 ncbi Thermus thermophilus HB81
TTHE262724 ncbi Thermus thermophilus HB271
TTEN273068 ncbi Thermoanaerobacter tengcongensis MB41
TSP28240 Thermotoga sp.0
TSP1755 Thermoanaerobacter sp.1
TROS309801 ncbi Thermomicrobium roseum DSM 51591
TPSE340099 ncbi Thermoanaerobacter pseudethanolicus ATCC 332231
TPET390874 ncbi Thermotoga petrophila RKU-10
TPEN368408 ncbi Thermofilum pendens Hrk 50
TPAL243276 ncbi Treponema pallidum pallidum Nichols1
TMAR243274 ncbi Thermotoga maritima MSB80
TLET416591 ncbi Thermotoga lettingae TMO0
TKOD69014 ncbi Thermococcus kodakarensis KOD10
TFUS269800 ncbi Thermobifida fusca YX0
TERY203124 ncbi Trichodesmium erythraeum IMS1011
TELO197221 ncbi Thermosynechococcus elongatus BP-11
TDEN243275 ncbi Treponema denticola ATCC 354050
TACI273075 ncbi Thermoplasma acidophilum DSM 17280
SWOL335541 ncbi Syntrophomonas wolfei wolfei Goettingen0
STRO369723 ncbi Salinispora tropica CNB-4401
STOK273063 ncbi Sulfolobus tokodaii 70
STHE322159 ncbi Streptococcus thermophilus LMD-90
STHE299768 ncbi Streptococcus thermophilus CNRZ10660
STHE264199 ncbi Streptococcus thermophilus LMG 183110
SSUI391296 ncbi Streptococcus suis 98HAH330
SSUI391295 ncbi Streptococcus suis 05ZYH330
SSP84588 ncbi Synechococcus sp. WH 81020
SSP64471 ncbi Synechococcus sp. CC93110
SSP321332 ncbi Synechococcus sp. JA-2-3Ba(2-13)0
SSP321327 ncbi Synechococcus sp. JA-3-3Ab0
SSP1148 ncbi Synechocystis sp. PCC 68031
SSP1131 Synechococcus sp. CC96051
SSOL273057 ncbi Sulfolobus solfataricus P21
SSAP342451 ncbi Staphylococcus saprophyticus saprophyticus ATCC 153050
SPYO370554 ncbi Streptococcus pyogenes MGAS107500
SPYO370553 ncbi Streptococcus pyogenes MGAS20960
SPYO370552 ncbi Streptococcus pyogenes MGAS102700
SPYO370551 ncbi Streptococcus pyogenes MGAS94290
SPYO319701 ncbi Streptococcus pyogenes MGAS61800
SPYO293653 ncbi Streptococcus pyogenes MGAS50050
SPYO286636 ncbi Streptococcus pyogenes MGAS103940
SPYO198466 ncbi Streptococcus pyogenes MGAS3150
SPYO193567 ncbi Streptococcus pyogenes SSI-10
SPYO186103 ncbi Streptococcus pyogenes MGAS82320
SPYO160490 ncbi Streptococcus pyogenes M1 GAS0
SPNE488221 ncbi Streptococcus pneumoniae 705850
SPNE487214 ncbi Streptococcus pneumoniae Hungary19A-60
SPNE487213 ncbi Streptococcus pneumoniae Taiwan19F-140
SPNE171101 ncbi Streptococcus pneumoniae R60
SPNE170187 ncbi Streptococcus pneumoniae G540
SPNE1313 Streptococcus pneumoniae0
SMUT210007 ncbi Streptococcus mutans UA1590
SMAR399550 ncbi Staphylothermus marinus F10
SHAE279808 ncbi Staphylococcus haemolyticus JCSC14351
SGOR29390 Streptococcus gordonii Challis0
SEPI176280 ncbi Staphylococcus epidermidis ATCC 122281
SEPI176279 ncbi Staphylococcus epidermidis RP62A1
SELO269084 ncbi Synechococcus elongatus PCC 63011
SCO ncbi Streptomyces coelicolor A3(2)0
SAVE227882 ncbi Streptomyces avermitilis MA-46800
SAUR93062 ncbi Staphylococcus aureus aureus COL0
SAUR93061 ncbi Staphylococcus aureus aureus NCTC 83250
SAUR426430 ncbi Staphylococcus aureus aureus Newman0
SAUR418127 ncbi Staphylococcus aureus aureus Mu30
SAUR367830 Staphylococcus aureus aureus USA3000
SAUR359787 ncbi Staphylococcus aureus aureus JH10
SAUR359786 ncbi Staphylococcus aureus aureus JH90
SAUR282459 ncbi Staphylococcus aureus aureus MSSA4760
SAUR282458 ncbi Staphylococcus aureus aureus MRSA2520
SAUR273036 ncbi Staphylococcus aureus RF1220
SAUR196620 ncbi Staphylococcus aureus aureus MW20
SAUR158879 ncbi Staphylococcus aureus aureus N3150
SAUR158878 ncbi Staphylococcus aureus aureus Mu500
SARE391037 ncbi Salinispora arenicola CNS-2050
SAGA211110 ncbi Streptococcus agalactiae NEM3160
SAGA208435 ncbi Streptococcus agalactiae 2603V/R0
SAGA205921 ncbi Streptococcus agalactiae A9090
SACI330779 ncbi Sulfolobus acidocaldarius DSM 6390
RSP101510 ncbi Rhodococcus jostii RHA10
RSAL288705 ncbi Renibacterium salmoninarum ATCC 332090
RALB246199 Ruminococcus albus 80
PTOR263820 ncbi Picrophilus torridus DSM 97900
PTHE370438 ncbi Pelotomaculum thermopropionicum SI0
PSP117 Pirellula sp.1
PPEN278197 ncbi Pediococcus pentosaceus ATCC 257450
PMOB403833 ncbi Petrotoga mobilis SJ950
PMAR93060 ncbi Prochlorococcus marinus MIT 92150
PMAR74547 ncbi Prochlorococcus marinus MIT 93130
PMAR74546 ncbi Prochlorococcus marinus MIT 93120
PMAR59920 ncbi Prochlorococcus marinus NATL2A0
PMAR167555 ncbi Prochlorococcus marinus NATL1A0
PMAR167546 ncbi Prochlorococcus marinus MIT 93010
PMAR167542 ncbi Prochlorococcus marinus MIT 95150
PMAR167540 Prochlorococcus marinus pastoris MED4ax0
PMAR167539 ncbi Prochlorococcus marinus marinus CCMP13750
PMAR146891 ncbi Prochlorococcus marinus AS96010
PISL384616 ncbi Pyrobaculum islandicum DSM 41840
PHOR70601 ncbi Pyrococcus horikoshii OT30
PGIN242619 ncbi Porphyromonas gingivalis W831
PFUR186497 ncbi Pyrococcus furiosus DSM 36380
PDIS435591 ncbi Parabacteroides distasonis ATCC 85031
PAST100379 Onion yellows phytoplasma0
PARS340102 ncbi Pyrobaculum arsenaticum DSM 135140
PAER178306 ncbi Pyrobaculum aerophilum IM20
PACN267747 ncbi Propionibacterium acnes KPA1712020
PABY272844 ncbi Pyrococcus abyssi GE50
OIHE221109 ncbi Oceanobacillus iheyensis HTE8311
NSP35761 Nocardioides sp.0
NSEN222891 ncbi Neorickettsia sennetsu Miyayama0
NPHA348780 ncbi Natronomonas pharaonis DSM 21600
NMEN374833 ncbi Neisseria meningitidis 0534421
NMEN272831 ncbi Neisseria meningitidis FAM181
NMEN122587 ncbi Neisseria meningitidis Z24911
NMEN122586 ncbi Neisseria meningitidis MC581
NGON242231 ncbi Neisseria gonorrhoeae FA 10901
NFAR247156 ncbi Nocardia farcinica IFM 101520
MVAN350058 ncbi Mycobacterium vanbaalenii PYR-10
MTUB419947 ncbi Mycobacterium tuberculosis H37Ra0
MTUB336982 ncbi Mycobacterium tuberculosis F110
MTHE349307 ncbi Methanosaeta thermophila PT1
MTHE264732 ncbi Moorella thermoacetica ATCC 390730
MTHE187420 ncbi Methanothermobacter thermautotrophicus Delta H0
MTBRV ncbi Mycobacterium tuberculosis H37Rv0
MTBCDC ncbi Mycobacterium tuberculosis CDC15510
MSYN262723 ncbi Mycoplasma synoviae 530
MSTA339860 ncbi Methanosphaera stadtmanae DSM 30910
MSP189918 ncbi Mycobacterium sp. KMS0
MSP164757 ncbi Mycobacterium sp. JLS0
MSP164756 ncbi Mycobacterium sp. MCS0
MSME246196 ncbi Mycobacterium smegmatis MC2 1550
MSED399549 ncbi Metallosphaera sedula DSM 53480
MPUL272635 ncbi Mycoplasma pulmonis UAB CTIP0
MPNE272634 ncbi Mycoplasma pneumoniae M1290
MPEN272633 ncbi Mycoplasma penetrans HF-20
MMYC272632 ncbi Mycoplasma mycoides mycoides SC str. PG10
MMOB267748 ncbi Mycoplasma mobile 163K0
MMAZ192952 ncbi Methanosarcina mazei Go11
MMAR444158 ncbi Methanococcus maripaludis C60
MMAR426368 ncbi Methanococcus maripaludis C70
MMAR402880 ncbi Methanococcus maripaludis C50
MMAR368407 ncbi Methanoculleus marisnigri JR11
MMAR267377 ncbi Methanococcus maripaludis S20
MLEP272631 ncbi Mycobacterium leprae TN0
MLAB410358 ncbi Methanocorpusculum labreanum Z0
MKAN190192 ncbi Methanopyrus kandleri AV190
MJAN243232 ncbi Methanocaldococcus jannaschii DSM 26610
MHYO295358 ncbi Mycoplasma hyopneumoniae 2320
MHYO262722 ncbi Mycoplasma hyopneumoniae 74480
MHYO262719 ncbi Mycoplasma hyopneumoniae J0
MHUN323259 ncbi Methanospirillum hungatei JF-10
MGIL350054 ncbi Mycobacterium gilvum PYR-GCK0
MGEN243273 ncbi Mycoplasma genitalium G370
MFLO265311 ncbi Mesoplasma florum L10
MCAP340047 ncbi Mycoplasma capricolum capricolum ATCC 273430
MBUR259564 ncbi Methanococcoides burtonii DSM 62421
MBOV410289 ncbi Mycobacterium bovis BCG str. Pasteur 1173P20
MBOV233413 ncbi Mycobacterium bovis AF2122/970
MBAR269797 ncbi Methanosarcina barkeri Fusaro1
MAVI243243 ncbi Mycobacterium avium 1040
MART243272 ncbi Mycoplasma arthritidis 158L3-10
MAER449447 ncbi Microcystis aeruginosa NIES-8430
MAEO419665 ncbi Methanococcus aeolicus Nankai-30
MACE188937 ncbi Methanosarcina acetivorans C2A1
MABS561007 ncbi Mycobacterium abscessus ATCC 199771
LXYL281090 ncbi Leifsonia xyli xyli CTCB070
LWEL386043 ncbi Listeria welshimeri serovar 6b str. SLCC53340
LSPH444177 ncbi Lysinibacillus sphaericus C3-410
LSAK314315 ncbi Lactobacillus sakei sakei 23K0
LREU557436 ncbi Lactobacillus reuteri DSM 200160
LPLA220668 ncbi Lactobacillus plantarum WCFS10
LMON265669 ncbi Listeria monocytogenes 4b F23650
LMON169963 ncbi Listeria monocytogenes EGD-e0
LMES203120 ncbi Leuconostoc mesenteroides mesenteroides ATCC 82930
LLAC272623 ncbi Lactococcus lactis lactis Il14030
LLAC272622 ncbi Lactococcus lactis cremoris SK110
LJOH257314 ncbi Lactobacillus johnsonii NCC 5330
LINT267671 ncbi Leptospira interrogans serovar Copenhageni str. Fiocruz L1-1300
LINT189518 ncbi Leptospira interrogans serovar Lai str. 566010
LINN272626 ncbi Listeria innocua Clip112620
LHEL405566 ncbi Lactobacillus helveticus DPC 45710
LGAS324831 ncbi Lactobacillus gasseri ATCC 333230
LDEL390333 ncbi Lactobacillus delbrueckii bulgaricus ATCC 118420
LDEL321956 ncbi Lactobacillus delbrueckii bulgaricus ATCC BAA-3650
LCAS321967 ncbi Lactobacillus casei ATCC 3340
LBRE387344 ncbi Lactobacillus brevis ATCC 3670
LBOR355277 ncbi Leptospira borgpetersenii serovar Hardjo-bovis JB1970
LBOR355276 ncbi Leptospira borgpetersenii serovar Hardjo-bovis L5500
LBIF456481 ncbi Leptospira biflexa serovar Patoc strain Patoc 1 (Paris)0
LBIF355278 ncbi Leptospira biflexa serovar Patoc strain Patoc 1 (Ames)0
LACI272621 ncbi Lactobacillus acidophilus NCFM0
KRAD266940 ncbi Kineococcus radiotolerans SRS302160
IHOS453591 ncbi Ignicoccus hospitalis KIN4/I0
HWAL362976 ncbi Haloquadratum walsbyi DSM 167901
HSP64091 ncbi Halobacterium sp. NRC-10
HSAL478009 ncbi Halobacterium salinarum R10
HMUK485914 ncbi Halomicrobium mukohataei DSM 122861
HMOD498761 ncbi Heliobacterium modesticaldum Ice10
HMAR272569 ncbi Haloarcula marismortui ATCC 430491
HBUT415426 ncbi Hyperthermus butylicus DSM 54560
HAUR316274 ncbi Herpetosiphon aurantiacus ATCC 237791
GVIO251221 ncbi Gloeobacter violaceus PCC 74211
GTHE420246 ncbi Geobacillus thermodenitrificans NG80-21
FSP1855 Frankia sp. EAN1pec1
FSP106370 ncbi Frankia sp. CcI31
FNUC190304 ncbi Fusobacterium nucleatum nucleatum ATCC 255861
FNOD381764 ncbi Fervidobacterium nodosum Rt17-B10
FMAG334413 ncbi Finegoldia magna ATCC 293280
FJOH376686 ncbi Flavobacterium johnsoniae UW1011
FALN326424 ncbi Frankia alni ACN14a1
ERUM302409 ncbi Ehrlichia ruminantium Gardel1
ERUM254945 ncbi Ehrlichia ruminantium Welgevonden1
EFAE226185 ncbi Enterococcus faecalis V5830
ECHA205920 ncbi Ehrlichia chaffeensis Arkansas1
ECAN269484 ncbi Ehrlichia canis Jake1
DSP255470 ncbi Dehalococcoides sp. CBDB10
DSP216389 ncbi Dehalococcoides sp. BAV10
DRED349161 ncbi Desulfotomaculum reducens MI-11
DRAD243230 ncbi Deinococcus radiodurans R11
DHAF138119 ncbi Desulfitobacterium hafniense Y511
DGEO319795 ncbi Deinococcus geothermalis DSM 113001
DETH243164 ncbi Dehalococcoides ethenogenes 1950
CTET212717 ncbi Clostridium tetani E880
CSUL444179 ncbi Candidatus Sulcia muelleri GWSS0
CPHY357809 ncbi Clostridium phytofermentans ISDg1
CPER289380 ncbi Clostridium perfringens SM1010
CPER195103 ncbi Clostridium perfringens ATCC 131240
CPER195102 ncbi Clostridium perfringens 130
CNOV386415 ncbi Clostridium novyi NT0
CMIC443906 ncbi Clavibacter michiganensis michiganensis NCPPB 3820
CMIC31964 ncbi Clavibacter michiganensis sepedonicus0
CMET456442 ncbi Candidatus Methanoregula boonei 6A80
CMAQ397948 ncbi Caldivirga maquilingensis IC-1670
CKOR374847 ncbi Candidatus Korarchaeum cryptofilum OPF80
CKLU431943 ncbi Clostridium kluyveri DSM 5550
CJEI306537 ncbi Corynebacterium jeikeium K4110
CHYD246194 ncbi Carboxydothermus hydrogenoformans Z-29010
CGLU196627 ncbi Corynebacterium glutamicum ATCC 130320
CEFF196164 ncbi Corynebacterium efficiens YS-3140
CDIP257309 ncbi Corynebacterium diphtheriae NCTC 131290
CDIF272563 ncbi Clostridium difficile 6300
CDES477974 ncbi Candidatus Desulforudis audaxviator MP104C0
CBOT536232 ncbi Clostridium botulinum A2 str. Kyoto1
CBOT515621 ncbi Clostridium botulinum Ba4 str. 6571
CBOT508765 ncbi Clostridium botulinum B str. Eklund 17B0
CBOT498213 ncbi Clostridium botulinum B1 str. Okra1
CBOT441772 ncbi Clostridium botulinum F str. Langeland1
CBOT441771 ncbi Clostridium botulinum A str. Hall1
CBOT441770 ncbi Clostridium botulinum A str. ATCC 193971
CBOT36826 Clostridium botulinum A1
CBEI290402 ncbi Clostridium beijerinckii NCIMB 80520
CACE272562 ncbi Clostridium acetobutylicum ATCC 8241
BWEI315730 ncbi Bacillus weihenstephanensis KBAB41
BTUR314724 ncbi Borrelia turicatae 91E1350
BTHU412694 ncbi Bacillus thuringiensis Al Hakam1
BTHU281309 ncbi Bacillus thuringiensis serovar konkukian str. 97-271
BTHE226186 ncbi Bacteroides thetaiotaomicron VPI-54821
BSUB ncbi Bacillus subtilis subtilis 1681
BSP107806 ncbi Buchnera aphidicola APS (Acyrthosiphon pisum)0
BPUM315750 ncbi Bacillus pumilus SAFR-0321
BLON206672 ncbi Bifidobacterium longum NCC27050
BHER314723 ncbi Borrelia hermsii DAH0
BHAL272558 ncbi Bacillus halodurans C-1251
BGAR290434 ncbi Borrelia garinii PBi0
BFRA295405 ncbi Bacteroides fragilis YCH461
BFRA272559 ncbi Bacteroides fragilis NCTC 93431
BCLA66692 ncbi Bacillus clausii KSM-K160
BCIC186490 Candidatus Baumannia cicadellinicola1
BCER572264 ncbi Bacillus cereus 03BB1021
BCER405917 Bacillus cereus W1
BCER315749 ncbi Bacillus cytotoxicus NVH 391-981
BCER288681 ncbi Bacillus cereus E33L1
BCER226900 ncbi Bacillus cereus ATCC 145791
BBUR224326 ncbi Borrelia burgdorferi B310
BAPH372461 ncbi Buchnera aphidicola Cc (Cinara cedri)0
BAPH198804 ncbi Buchnera aphidicola Sg (Schizaphis graminum)0
BANT592021 ncbi Bacillus anthracis A02481
BANT568206 ncbi Bacillus anthracis CDC 6841
BANT261594 ncbi Bacillus anthracis Ames Ancestor1
BANT260799 ncbi Bacillus anthracis Sterne1
BAFZ390236 ncbi Borrelia afzelii PKo0
AYEL322098 ncbi Aster yellows witches-broom phytoplasma AYWB0
AURANTIMONAS Aurantimonas manganoxydans SI85-9A10
ASP1667 Arthrobacter sp.0
APER272557 ncbi Aeropyrum pernix K10
AORE350688 ncbi Alkaliphilus oremlandii OhILAs0
ANAE240017 Actinomyces oris MG10
AMET293826 ncbi Alkaliphilus metalliredigens QYMF1
AMAR329726 ncbi Acaryochloris marina MBIC110171
ALAI441768 ncbi Acholeplasma laidlawii PG-8A1
AFUL224325 ncbi Archaeoglobus fulgidus DSM 43040
ACEL351607 ncbi Acidothermus cellulolyticus 11B0
ABUT367737 ncbi Arcobacter butzleri RM40181
AAUR290340 ncbi Arthrobacter aurescens TC10
AAEO224324 ncbi Aquifex aeolicus VF51


Names of the homologs of the genes in the group in each of these orgs
  EG12395   EG11110   EG11011   EG11010   EG11008   EG11007   EG10684   
WPIP955 WD_0038
WPIP80849
UURE95667
UURE95664
UPAR505682
UMET351160
TWHI218496
TWHI203267
TVOL273116
TTHE300852 TTHA0908
TTHE262724 TT_C0552
TTEN273068 TTE1814
TSP28240
TSP1755 TETH514_1196
TROS309801 TRD_0931
TPSE340099 TETH39_0685
TPET390874
TPEN368408
TPAL243276 TP_0156
TMAR243274
TLET416591
TKOD69014
TFUS269800
TERY203124 TERY_4502
TELO197221 TLR0055
TDEN243275
TACI273075
SWOL335541
STRO369723 STROP_0590
STOK273063
STHE322159
STHE299768
STHE264199
SSUI391296
SSUI391295
SSP84588
SSP64471
SSP321332
SSP321327
SSP1148 SLR0204
SSP1131 SYNCC9605_0474
SSOL273057 SSO2295
SSAP342451
SPYO370554
SPYO370553
SPYO370552
SPYO370551
SPYO319701
SPYO293653
SPYO286636
SPYO198466
SPYO193567
SPYO186103
SPYO160490
SPNE488221
SPNE487214
SPNE487213
SPNE171101
SPNE170187
SPNE1313
SMUT210007
SMAR399550
SHAE279808 SH1557
SGOR29390
SEPI176280 SE_1033
SEPI176279 SERP0922
SELO269084 SYC0829_C
SCO
SAVE227882
SAUR93062
SAUR93061
SAUR426430
SAUR418127
SAUR367830
SAUR359787
SAUR359786
SAUR282459
SAUR282458
SAUR273036
SAUR196620
SAUR158879
SAUR158878
SARE391037
SAGA211110
SAGA208435
SAGA205921
SACI330779
RSP101510
RSAL288705
RALB246199
PTOR263820
PTHE370438
PSP117 RB11967
PPEN278197
PMOB403833
PMAR93060
PMAR74547
PMAR74546
PMAR59920
PMAR167555
PMAR167546
PMAR167542
PMAR167540
PMAR167539
PMAR146891
PISL384616
PHOR70601
PGIN242619 PG_0724
PFUR186497
PDIS435591 BDI_2988
PAST100379
PARS340102
PAER178306
PACN267747
PABY272844
OIHE221109 OB1684
NSP35761
NSEN222891
NPHA348780
NMEN374833 NMCC_1641
NMEN272831 NMC1648
NMEN122587 NMA1983
NMEN122586 NMB_1728
NGON242231 NGO1377
NFAR247156
MVAN350058
MTUB419947
MTUB336982
MTHE349307 MTHE_0834
MTHE264732
MTHE187420
MTBRV
MTBCDC
MSYN262723
MSTA339860
MSP189918
MSP164757
MSP164756
MSME246196
MSED399549
MPUL272635
MPNE272634
MPEN272633
MMYC272632
MMOB267748
MMAZ192952 MM3087
MMAR444158
MMAR426368
MMAR402880
MMAR368407 MEMAR_0776
MMAR267377
MLEP272631
MLAB410358
MKAN190192
MJAN243232
MHYO295358
MHYO262722
MHYO262719
MHUN323259
MGIL350054
MGEN243273
MFLO265311
MCAP340047
MBUR259564 MBUR_0392
MBOV410289
MBOV233413
MBAR269797 MBAR_A1627
MAVI243243
MART243272
MAER449447
MAEO419665
MACE188937 MA1540
MABS561007 MAB_4256C
LXYL281090
LWEL386043
LSPH444177
LSAK314315
LREU557436
LPLA220668
LMON265669
LMON169963
LMES203120
LLAC272623
LLAC272622
LJOH257314
LINT267671
LINT189518
LINN272626
LHEL405566
LGAS324831
LDEL390333
LDEL321956
LCAS321967
LBRE387344
LBOR355277
LBOR355276
LBIF456481
LBIF355278
LACI272621
KRAD266940
IHOS453591
HWAL362976 HQ2276A
HSP64091
HSAL478009
HMUK485914 HMUK_0148
HMOD498761
HMAR272569 RRNAC2119
HBUT415426
HAUR316274 HAUR_4532
GVIO251221 GLL1140
GTHE420246 GTNG_1410
FSP1855 FRANEAN1_5592
FSP106370 FRANCCI3_0948
FNUC190304 FN0335
FNOD381764
FMAG334413
FJOH376686 FJOH_0004
FALN326424 FRAAL1583
ERUM302409 ERGA_CDS_05800
ERUM254945 ERWE_CDS_05890
EFAE226185
ECHA205920 ECH_0462
ECAN269484 ECAJ_0563
DSP255470
DSP216389
DRED349161 DRED_0597
DRAD243230 DR_0902
DHAF138119 DSY1602
DGEO319795 DGEO_1696
DETH243164
CTET212717
CSUL444179
CPHY357809 CPHY_2999
CPER289380
CPER195103
CPER195102
CNOV386415
CMIC443906
CMIC31964
CMET456442
CMAQ397948
CKOR374847
CKLU431943
CJEI306537
CHYD246194
CGLU196627
CEFF196164
CDIP257309
CDIF272563
CDES477974
CBOT536232 CLM_1311
CBOT515621 CLJ_B1202
CBOT508765
CBOT498213 CLD_3409
CBOT441772 CLI_1241
CBOT441771 CLC_1203
CBOT441770 CLB_1191
CBOT36826 CBO1160
CBEI290402
CACE272562 CAC0271
BWEI315730 BCERKBAB4_3293
BTUR314724
BTHU412694 BALH_3247
BTHU281309 BT9727_3363
BTHE226186 BT_0587
BSUB BSU32230
BSP107806
BPUM315750 BPUM_1704
BLON206672
BHER314723
BHAL272558 BH2288
BGAR290434
BFRA295405 BF3977
BFRA272559 BF3752
BCLA66692
BCIC186490 BCI_0100
BCER572264 BCA_3699
BCER405917 BCE_3626
BCER315749 BCER98_2255
BCER288681 BCE33L3313
BCER226900 BC_3606
BBUR224326
BAPH372461
BAPH198804
BANT592021 BAA_3695
BANT568206 BAMEG_0967
BANT261594 GBAA3667
BANT260799 BAS3401
BAFZ390236
AYEL322098
AURANTIMONAS
ASP1667
APER272557
AORE350688
ANAE240017
AMET293826 AMET_4064
AMAR329726 AM1_B0094
ALAI441768 ACL_1111
AFUL224325
ACEL351607
ABUT367737 ABU_0529
AAUR290340
AAEO224324 AQ_1494


Organism features enriched in list (features available for 281 out of the 303 orgs in the list)
Feature    Pvalue       Num occurrences in list  Total num occurrences  
Arrangment:Chains 4.105e-76692
Arrangment:Clusters 3.159e-61717
Arrangment:Pairs 0.003464366112
Disease:Toxic-shock_syndrome_and_staphylococcal_scarlet_fever 0.00029411111
Disease:Wide_range_of_infections 0.00029411111
Disease:gastroenteritis 0.0021450113
Endospores:No 3.024e-17150211
Endospores:Yes 1.036e-104753
GC_Content_Range4:0-40 3.337e-17151213
GC_Content_Range4:40-60 7.670e-683224
GC_Content_Range4:60-100 4.465e-647145
GC_Content_Range7:0-30 7.189e-104247
GC_Content_Range7:30-40 4.680e-8109166
GC_Content_Range7:50-60 4.302e-631107
GC_Content_Range7:60-70 1.848e-739134
Genome_Size_Range5:0-2 0.000011797155
Genome_Size_Range5:2-4 0.0000200118197
Genome_Size_Range5:4-6 7.517e-1153184
Genome_Size_Range5:6-10 0.00152081347
Genome_Size_Range9:0-1 0.00024562227
Genome_Size_Range9:1-2 0.002316275128
Genome_Size_Range9:2-3 1.212e-885120
Genome_Size_Range9:4-5 0.00001822896
Genome_Size_Range9:5-6 0.00002312588
Genome_Size_Range9:6-8 0.0008940938
Gram_Stain:Gram_Neg 3.087e-6861333
Gram_Stain:Gram_Pos 1.909e-48144150
Habitat:Specialized 0.00017123853
Motility:No 4.342e-14112151
Motility:Yes 5.644e-897267
Optimal_temp.:- 0.0001529103257
Optimal_temp.:30-37 1.473e-61818
Oxygen_Req:Aerobic 0.000657872185
Oxygen_Req:Anaerobic 1.237e-1078102
Oxygen_Req:Microaerophilic 0.0008283218
Pathogenic_in:Animal 0.00185372166
Salinity:Non-halophilic 0.000507066106
Shape:Coccus 6.902e-177382
Shape:Irregular_coccus 3.159e-61717
Shape:Rod 8.043e-20114347
Shape:Sphere 0.00015351719
Temp._range:Hyperthermophilic 3.154e-82323
Temp._range:Mesophilic 0.0056941217473
Temp._range:Thermophilic 0.00023972735



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ORGANISMS ENRICHED FOR GROUP:




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ORGANISMS DEPLETED FOR GROUP:




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PHYLOGENETIC PROFILE SIMILARITY WITH KNOWN PATHWAYS:

Pathways or complexes with absolute value of Pearson coefficient with respect to candidate larger than 0.4 are listed below
The candidate is assumed to exist in orgs listed in section List of organisms containing most genes from the group


Pathway or complex  # Orgs containing it  # of those orgs also containing candidate  Pearson Coeff  
PWY-5861 (superpathway of demethylmenaquinone-8 biosynthesis)50430.6661
GALACTITOLCAT-PWY (galactitol degradation)73500.6267
PWY0-1315 (L-lactaldehyde degradation (anaerobic))45360.5781
HEXITOLDEGSUPER-PWY (superpathway of hexitol degradation)37290.5081
LYXMET-PWY (L-lyxose degradation)87460.5007
AST-PWY (arginine degradation II (AST pathway))120540.4895
PWY0-1241 (ADP-L-glycero-β-D-manno-heptose biosynthesis)218740.4875
SORBDEG-PWY (sorbitol degradation II)53340.4840
PWY0-1355 (formate to trimethylamine N-oxide electron transfer)31250.4786
PWY-46 (putrescine biosynthesis III)138570.4744
GLUTDEG-PWY (glutamate degradation II)194680.4696
GLCMANNANAUT-PWY (superpathway of N-acetylglucosamine, N-acetylmannosamine and N-acetylneuraminate degradation)134550.4614
PWY0-1324 (N-acetylneuraminate and N-acetylmannosamine degradation)135550.4587
RHAMCAT-PWY (rhamnose degradation)91440.4569
MANNIDEG-PWY (mannitol degradation I)99460.4551
TREDEGLOW-PWY (trehalose degradation I (low osmolarity))121510.4493
PWY0-1356 (formate to dimethyl sulfoxide electron transfer)22190.4336
ECASYN-PWY (enterobacterial common antigen biosynthesis)191640.4329
ARABCAT-PWY (L-arabinose degradation I)128510.4295
LPSSYN-PWY (superpathway of lipopolysaccharide biosynthesis)91420.4291
PWY-6406 (salicylate biosynthesis I)188630.4281
PWY-5837 (1,4-dihydroxy-2-naphthoate biosynthesis I)228690.4193
FUC-RHAMCAT-PWY (superpathway of fucose and rhamnose degradation)19170.4188
PWY-5852 (demethylmenaquinone-8 biosynthesis I)167580.4166
PWY0-1295 (pyrimidine ribonucleosides degradation I)239700.4120
LIPA-CORESYN-PWY (Lipid A-core biosynthesis)176590.4088
PWY-5833 (CDP-3,6-dideoxyhexose biosynthesis)14140.4068
PWY-5838 (superpathway of menaquinone-8 biosynthesis I)16150.4046
GLYCOCAT-PWY (glycogen degradation I)246700.4012
PWY-5148 (acyl-CoA hydrolysis)227670.4006
PWY-5921 (L-glutamine biosynthesis II (tRNA-dependent))4011-.4907



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PAIRWISE GENOME CONTEXT SCORE MATRIX:

  EG11110   EG11011   EG11010   EG11008   EG11007   EG10684   
EG123950.9990560.998890.9989830.9987550.9987830.998653
EG111100.9998630.9999190.9997950.9992820.999741
EG110110.9999740.9999370.9994490.999865
EG110100.999930.9993670.999854
EG110080.9994510.999969
EG110070.999355
EG10684



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PAIRWISE BLAST SCORES:

  EG12395   EG11110   EG11011   EG11010   EG11008   EG11007   EG10684   
EG123950.0f0------
EG11110-0.0f0-----
EG11011--0.0f0----
EG11010---0.0f0---
EG11008----0.0f0--
EG11007-----0.0f0-
EG10684------0.0f0



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PATHWAYS OR PROTEIN COMPLEX MATCHES IN TARGET ORG:

For each case, all genes involved in the pathway or complex are listed. For each gene we list: a tag indicating whether the gene is part of the candidate list or not, the average and the minimum scores of the gene to the candidate list, the gene name, and its product names.

- CPLX0-2201 (The Tol-Pal Cell Envelope Complex) (degree of match pw to cand: 0.833, degree of match cand to pw: 0.714, average score: 1.000)
  Genes in pathway or complex:
   *in cand* 0.9996 0.9987 EG10684 (pal) EG10684-MONOMER (Pal)
             0.9995 0.9985 EG12854 (ybgF) EG12854-MONOMER (predicted periplasmic protein)
   *in cand* 0.9997 0.9988 EG11008 (tolB) EG11008-MONOMER (TolB)
   *in cand* 0.9997 0.9989 EG11011 (tolR) EG11011-MONOMER (TolR)
   *in cand* 0.9997 0.9990 EG11010 (tolQ) EG11010-MONOMER (TolQ)
   *in cand* 0.9994 0.9988 EG11007 (tolA) EG11007-MONOMER (TolA)
  Genes in candidate but not in this pathway or complex:
   *in cand* 0.9997 0.9991 EG11110 (ybgC) EG11110-MONOMER (esterase/thioesterase)
   *in cand* 0.9990 0.9987 EG12395 (ybgE) EG12395-MONOMER (putative lipoprotein)

- CPLX0-2202 (Colicin S4 Transport System) (degree of match pw to cand: 0.714, degree of match cand to pw: 0.714, average score: 0.867)
  Genes in pathway or complex:
             0.5487 0.4097 EG11124 (ompW) EG11124-MONOMER (OmpW, outer membrane protein)
   *in cand* 0.9994 0.9988 EG11007 (tolA) EG11007-MONOMER (TolA)
   *in cand* 0.9997 0.9990 EG11010 (tolQ) EG11010-MONOMER (TolQ)
   *in cand* 0.9997 0.9989 EG11011 (tolR) EG11011-MONOMER (TolR)
   *in cand* 0.9997 0.9988 EG11008 (tolB) EG11008-MONOMER (TolB)
             0.9995 0.9985 EG12854 (ybgF) EG12854-MONOMER (predicted periplasmic protein)
   *in cand* 0.9996 0.9987 EG10684 (pal) EG10684-MONOMER (Pal)
  Genes in candidate but not in this pathway or complex:
   *in cand* 0.9997 0.9991 EG11110 (ybgC) EG11110-MONOMER (esterase/thioesterase)
   *in cand* 0.9990 0.9987 EG12395 (ybgE) EG12395-MONOMER (putative lipoprotein)

- CPLX0-2221 (The Colicin A Import System) (degree of match pw to cand: 0.625, degree of match cand to pw: 0.714, average score: 0.867)
  Genes in pathway or complex:
   *in cand* 0.9994 0.9988 EG11007 (tolA) EG11007-MONOMER (TolA)
   *in cand* 0.9997 0.9990 EG11010 (tolQ) EG11010-MONOMER (TolQ)
   *in cand* 0.9997 0.9989 EG11011 (tolR) EG11011-MONOMER (TolR)
   *in cand* 0.9997 0.9988 EG11008 (tolB) EG11008-MONOMER (TolB)
             0.9995 0.9985 EG12854 (ybgF) EG12854-MONOMER (predicted periplasmic protein)
   *in cand* 0.9996 0.9987 EG10684 (pal) EG10684-MONOMER (Pal)
             0.7594 0.7204 EG10671 (ompF) EG10671-MONOMER (OmpF)
             0.6431 0.1435 EG10126 (btuB) EG10126-MONOMER (outer membrane receptor for transport of vitamin B12, E colicins, and bacteriophage BF23)
  Genes in candidate but not in this pathway or complex:
   *in cand* 0.9997 0.9991 EG11110 (ybgC) EG11110-MONOMER (esterase/thioesterase)
   *in cand* 0.9990 0.9987 EG12395 (ybgE) EG12395-MONOMER (putative lipoprotein)



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GENOME CONTEXT INFORMATION:

Each row corresponds to a replicon in an organism, each column to a gene in the candidate. The second column indicates whether the organims was included in the list used to compute the genome context scores or not. Some organisms are not included because they are phylogenetically too similar to others already in the list.
The number in the matrix indicate the position of the homolog of the gene in the replicon. All numbers are relative to the smaller one, which is assigned a position of zero. Two columns with the same number indicate that the two genes matched the same gene in that organism.

Genome browser links for gene clusters

The links below opens a genome browser BioCyc page for each cluster of genes in the target genome. These pages shows the central gene of the cluster in the target genome and its best homolog in the reference genomes, for the genomes that contain homologs for at least 75% of the genes in the group. Only one genome per phylogenetic cluster of organisms is shown, to keep the list smaller.

EG10684 EG11007 EG11008 EG11010 EG11011 EG11110 EG12395 (centered at EG11011)


ORG:REPLICON:CIRC?\GENE  IN REF LIST  EG12395   EG11110   EG11011   EG11010   EG11008   EG11007   EG10684   
58/623316/623284/623277/623336/62377/623313/623
AAEO224324:0:Tyes-0-----
AAVE397945:0:Tyes-2011159-1158
ABAC204669:0:Tyes-823343541-0
ABAU360910:0:Tyes-0214-5
ABOR393595:0:Tyes-0214-5
ABUT367737:0:Tyes-0-----
ACAU438753:0:Tyes-0214-5
ACRY349163:8:Tyes-2552255025512548-0
ADEH290397:0:Tyes-992230-2700
AEHR187272:0:Tyes--341-0
AFER243159:0:Tyes-8674-0
AHYD196024:0:Tyes6534120
ALAI441768:0:Tyes-0-----
AMAR234826:0:Tyes---690-440
AMAR329726:7:Tyes----0--
AMET293826:0:Tyes-0-----
APHA212042:0:Tyes---573662-0
APLE416269:0:Tyes-021435
APLE434271:0:Tno0132546
ASAL382245:5:Tyes0132546
ASP232721:2:Tyes-1016101810170-1
ASP62928:0:Tyes-5341-0
ASP62977:0:Tyes0299301300303-304
ASP76114:2:Tyes-0214-5
AVAR240292:3:Tyes-01439----
BABO262698:1:Tno-6452-0
BAMB339670:2:Tno------0
BAMB339670:3:Tno-4230--
BAMB398577:2:Tno------0
BAMB398577:3:Tno-4230--
BAMY326423:0:Tyes-0--1148--
BANT260799:0:Tno-0-----
BANT261594:2:Tno-0-----
BANT568206:2:Tyes-0-----
BANT592021:2:Tno-0-----
BBAC264462:0:Tyes-1602230-413
BBAC360095:0:Tyes-4230-21
BBRO257310:0:Tyes-0214-5
BCAN483179:1:Tno-6452-0
BCEN331271:1:Tno------0
BCEN331271:2:Tno-4230--
BCEN331272:2:Tyes------0
BCEN331272:3:Tyes-4230--
BCER226900:1:Tyes-0-----
BCER288681:0:Tno-0-----
BCER315749:1:Tyes-0-----
BCER405917:1:Tyes-0-----
BCER572264:1:Tno-0-----
BCIC186490:0:Tyes------0
BFRA272559:1:Tyes----0--
BFRA295405:0:Tno----0--
BHAL272558:0:Tyes-0-----
BHEN283166:0:Tyes-8674-0
BJAP224911:0:Fyes-63563-0
BLIC279010:0:Tyes-0--1312--
BMAL243160:1:Tno-0214-5
BMAL320388:1:Tno-5341-0
BMAL320389:1:Tyes-0214-5
BMEL224914:1:Tno-0214-5
BMEL359391:1:Tno-6452-0
BOVI236:1:Tyes-6341-0
BPAR257311:0:Tno-0214-5
BPER257313:0:Tyes-5341-0
BPET94624:0:Tyes-5341-0
BPSE272560:1:Tyes-0214-5
BPSE320372:1:Tno-0214-5
BPSE320373:1:Tno-0214-5
BPUM315750:0:Tyes-0-----
BQUI283165:0:Tyes-7563-0
BSP36773:0:Tyes------0
BSP36773:2:Tyes-4230--
BSP376:0:Tyes-0222124-27
BSUB:0:Tyes----0--
BSUI204722:1:Tyes-6452-0
BSUI470137:0:Tno-7452-0
BTHA271848:1:Tno-5341-0
BTHE226186:0:Tyes----0--
BTHU281309:1:Tno-0-----
BTHU412694:1:Tno-0-----
BTRI382640:1:Tyes-10896-0
BVIE269482:7:Tyes-5341-0
BWEI315730:4:Tyes-0-----
BXEN266265:0:Tyes--0140---
CABO218497:0:Tyes----0-1
CACE272562:1:Tyes-0-----
CAULO:0:Tyes-2956029552952-2951
CBLO203907:0:Tyes--10324
CBLO291272:0:Tno--10324
CBOT36826:1:Tno-0-----
CBOT441770:0:Tyes-0-----
CBOT441771:0:Tno-0-----
CBOT441772:1:Tno-0-----
CBOT498213:1:Tno-0-----
CBOT515621:2:Tyes-0-----
CBOT536232:0:Tno-0-----
CBUR227377:1:Tyes-1353142214210-1
CBUR360115:1:Tno-1415148614850-1
CBUR434922:2:Tno-63011529-1528
CCAV227941:1:Tyes----0-1
CCHL340177:0:Tyes--877876879-0
CCON360104:2:Tyes-3280-2-3
CCUR360105:0:Tyes-123-01224-1223
CFEL264202:1:Tyes----1-0
CFET360106:0:Tyes----1-0
CHOM360107:1:Tyes-0--128-129
CHUT269798:0:Tyes-932--1282-0
CJAP155077:0:Tyes--103-4
CJEJ192222:0:Tyes-82268670-1
CJEJ195099:0:Tno-91066650-1
CJEJ354242:2:Tyes-804--0-1
CJEJ360109:0:Tyes-654--0-1
CJEJ407148:0:Tno-832--0-1
CMUR243161:1:Tyes----0-1
CPEL335992:0:Tyes-274103-4
CPHY357809:0:Tyes-0-----
CPNE115711:1:Tyes----0-1
CPNE115713:0:Tno----1-0
CPNE138677:0:Tno----1-0
CPNE182082:0:Tno----1-0
CPRO264201:0:Fyes----0-1
CPSY167879:0:Tyes-021435
CRUT413404:0:Tyes--1921930-1
CSAL290398:0:Tyes-0214-5
CSP501479:7:Fyes-0214-5
CSP78:2:Tyes-586042664263-4262
CTEP194439:0:Tyes-620103-5
CTRA471472:0:Tyes----0-1
CTRA471473:0:Tno----0-1
CVES412965:0:Tyes--1921930-1
CVIO243365:0:Tyes--04542-3
DARO159087:0:Tyes-5341-0
DDES207559:0:Tyes-0912911914-915
DGEO319795:1:Tyes-0-----
DHAF138119:0:Tyes-0-----
DNOD246195:0:Tyes--341-0
DOLE96561:0:Tyes--341-0
DPSY177439:2:Tyes-0687686689-1156
DRAD243230:3:Tyes-0-----
DRED349161:0:Tyes-0-----
DSHI398580:5:Tyes-0214-5
DVUL882:1:Tyes-0149422022206-2207
ECAN269484:0:Tyes------0
ECAR218491:0:Tyes0132546
ECHA205920:0:Tyes------0
ECOL199310:0:Tno0132547
ECOL316407:0:Tno0132546
ECOL331111:6:Tno0132546
ECOL362663:0:Tno0132546
ECOL364106:1:Tno0132547
ECOL405955:2:Tyes0132546
ECOL409438:6:Tyes0132546
ECOL413997:0:Tno0132546
ECOL439855:4:Tno0132546
ECOL469008:0:Tno6534120
ECOL481805:0:Tno6534120
ECOL585034:0:Tno0132546
ECOL585035:0:Tno0132546
ECOL585055:0:Tno0132546
ECOL585056:2:Tno0132546
ECOL585057:0:Tno0132546
ECOL585397:0:Tno0132546
ECOL83334:0:Tno0132546
ECOLI:0:Tno0132546
ECOO157:0:Tno0132546
EFER585054:1:Tyes6534120
ELIT314225:0:Tyes-1426-14251420-0
ERUM254945:0:Tyes------0
ERUM302409:0:Tno------0
ESP42895:1:Tyes0132546
FALN326424:0:Tyes----0--
FJOH376686:0:Tyes-0-----
FNUC190304:0:Tyes------0
FPHI484022:1:Tyes--452-0
FRANT:0:Tno--103-5
FSP106370:0:Tyes----0--
FSP1855:0:Tyes----0--
FSUC59374:0:Tyes-1117--1-0
FTUL351581:0:Tno--103-5
FTUL393011:0:Tno--103-5
FTUL393115:0:Tyes--103-5
FTUL401614:0:Tyes--103-5
FTUL418136:0:Tno--452-0
FTUL458234:0:Tno--103-5
GBET391165:0:Tyes-0214-5
GFOR411154:0:Tyes-0--2352-982
GKAU235909:1:Tyes-602--0--
GMET269799:1:Tyes-59414043-0
GOXY290633:5:Tyes-0214-5
GSUL243231:0:Tyes-3418230-2268
GTHE420246:1:Tyes-0-----
GURA351605:0:Tyes-4097341-0
GVIO251221:0:Tyes--0----
HACI382638:1:Tyes-198--0-1
HARS204773:0:Tyes-0214-5
HAUR316274:2:Tyes----0--
HCHE349521:0:Tyes-5341-0
HDUC233412:0:Tyes54231-0
HHAL349124:0:Tyes--103-4
HHEP235279:0:Tyes-459--0-1
HINF281310:0:Tyes-534120
HINF374930:0:Tyes-021435
HINF71421:0:Tno-534120
HMAR272569:8:Tyes----0--
HMUK485914:1:Tyes----0--
HNEP81032:0:Tyes-0214-5
HPY:0:Tno-0----628
HPYL357544:1:Tyes-0----607
HPYL85963:0:Tno-0----601
HSOM205914:1:Tyes-021435
HSOM228400:0:Tno-021435
HWAL362976:1:Tyes----0--
ILOI283942:0:Tyes-5341-0
JSP290400:1:Tyes-0216-7
JSP375286:0:Tyes-0214-5
KPNE272620:2:Tyes4230426425428427429
LCHO395495:0:Tyes-2492024931486-3377
LINT363253:3:Tyes-33341-0
LPNE272624:0:Tno-4230-471
LPNE297245:1:Fno-0214-572
LPNE297246:1:Fyes-4230-500
LPNE400673:0:Tno-4230-523
MABS561007:1:Tyes-0-----
MACE188937:0:Tyes----0--
MAQU351348:2:Tyes-5341-0
MBAR269797:1:Tyes----0--
MBUR259564:0:Tyes----0--
MCAP243233:0:Tyes-0325-6
MEXT419610:0:Tyes-3145031433140-3223
MFLA265072:0:Tyes-7840783780-779
MLOT266835:2:Tyes-6341-0
MMAG342108:0:Tyes-5341-0
MMAR368407:0:Tyes----0--
MMAR394221:0:Tyes-6341-0
MMAZ192952:0:Tyes----0--
MPET420662:1:Tyes-1600160216010-1
MSP266779:3:Tyes-5341-0
MSP400668:0:Tyes--103-4
MSP409:2:Tyes-78956129552952-0
MSUC221988:0:Tyes013254-
MTHE349307:0:Tyes----0--
MXAN246197:0:Tyes-0125512541257-121
NARO279238:0:Tyes-630632631634-0
NEUR228410:0:Tyes-0214-5
NEUT335283:2:Tyes-0214-5
NGON242231:0:Tyes--0----
NHAM323097:2:Tyes-11563-0
NMEN122586:0:Tno--0----
NMEN122587:0:Tyes--0----
NMEN272831:0:Tno--0----
NMEN374833:0:Tno--0----
NMUL323848:3:Tyes-5341-0
NOCE323261:1:Tyes-0214-5
NSP103690:6:Tyes-34640----
NSP387092:0:Tyes-0----530
NWIN323098:0:Tyes-9563-0
OANT439375:5:Tyes-0214-6
OCAR504832:0:Tyes-8341-0
OIHE221109:0:Tyes-0-----
OTSU357244:0:Fyes--6916920-1022
PAER208963:0:Tyes-5341-0
PAER208964:0:Tno-0214-5
PARC259536:0:Tyes-293343342345-0
PATL342610:0:Tyes-534120
PCAR338963:0:Tyes-0149714981495-1494
PCRY335284:1:Tyes-58230-374
PDIS435591:0:Tyes----0--
PENT384676:0:Tyes-5130041-0
PFLU205922:0:Tyes-5341-0
PFLU216595:1:Tyes-5341-0
PFLU220664:0:Tyes-5341-0
PGIN242619:0:Tyes----0--
PHAL326442:1:Tyes--341-0
PING357804:0:Tyes-0214-5
PINT246198:1:Tyes----0-638
PLUM243265:0:Fyes-021435
PLUT319225:0:Tyes--103-5
PMEN399739:0:Tyes-0214-5
PMUL272843:1:Tyes6534120
PNAP365044:8:Tyes-8685188691-0
PPRO298386:2:Tyes6534120
PPUT160488:0:Tno-0214-5
PPUT351746:0:Tyes-0214-5
PPUT76869:0:Tno-5341-0
PRUM264731:0:Tyes-1261--0--
PSP117:0:Tyes-0-----
PSP296591:2:Tyes-9049069050-1
PSP312153:0:Tyes-1085341-0
PSP56811:2:Tyes--652651654-0
PSTU379731:0:Tyes-5341-0
PSYR205918:0:Tyes-0214-5
PSYR223283:2:Tyes-5341-0
RAKA293614:0:Fyes--1090-703
RBEL336407:0:Tyes--141140143-0
RBEL391896:0:Fno--230-152
RCAN293613:0:Fyes--0113-186
RCAS383372:0:Tyes-0--4072--
RCON272944:0:Tno--17160-818
RDEN375451:4:Tyes-0214-5
RETL347834:5:Tyes-6451-0
REUT264198:3:Tyes-0214-5
REUT381666:2:Tyes-5341-0
RFEL315456:2:Tyes--13120-761
RFER338969:1:Tyes-011441143563-564
RLEG216596:6:Tyes-5341-0
RMAS416276:1:Tyes--980-568
RMET266264:2:Tyes-5341-0
RPAL258594:0:Tyes-0151417-20
RPAL316055:0:Tyes-61785-0
RPAL316056:0:Tyes-0283828392836-2833
RPAL316057:0:Tyes-21563-0
RPAL316058:0:Tyes-2471103-6
RPOM246200:1:Tyes-5341-0
RPRO272947:0:Tyes--870-458
RRIC392021:0:Fno--16150-772
RRIC452659:0:Tyes--16150-792
RRUB269796:1:Tyes-0214-5
RSOL267608:1:Tyes-0214-5
RSP357808:0:Tyes-0--1824--
RSPH272943:4:Tyes-5341-0
RSPH349101:2:Tno-5341-0
RSPH349102:5:Tyes-0214-5
RTYP257363:0:Tno--760-463
RXYL266117:0:Tyes-1074--0--
SACI56780:0:Tyes-762103-4
SALA317655:1:Tyes-5341-0
SBAL399599:3:Tyes-021435
SBAL402882:1:Tno-021435
SBOY300268:1:Tyes0132546
SDEG203122:0:Tyes--341-0
SDEN318161:0:Tyes-021435
SDYS300267:1:Tyes0132546
SELO269084:0:Tyes-0-----
SENT209261:0:Tno6534120
SENT220341:0:Tno0132546
SENT295319:0:Tno6534120
SENT321314:2:Tno0132546
SENT454169:2:Tno0132546
SEPI176279:1:Tyes-0-----
SEPI176280:0:Tno-0-----
SERY405948:0:Tyes-0--2632--
SFLE198214:0:Tyes6534120
SFLE373384:0:Tno6534120
SFUM335543:0:Tyes-458103-4
SGLO343509:3:Tyes-021435
SHAE279808:0:Tyes-0-----
SHAL458817:0:Tyes-021435
SHIGELLA:0:Tno6534120
SLAC55218:1:Fyes-5341-0
SLOI323850:0:Tyes-021435
SMED366394:3:Tyes-1464014621459-1458
SMEL266834:2:Tyes-6341-0
SONE211586:1:Tyes-534120
SPEA398579:0:Tno-5341-0
SPRO399741:1:Tyes0132546
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