CANDIDATE ID: 298

CANDIDATE ID: 298

NUMBER OF GENES: 7
AVERAGE SCORE:    9.9947305e-1 (range=[0.0,1.0])
AVERAGE MINIMUM BLAST P-VAL:    1.0000000e+0

Gene List
List of organisms containing most genes from the group
    Phylogenetic tree highlighting these organisms (opens new page)
List of organisms containing very few or no genes from the group
List of organisms enriched for group
List of organisms depleted for group
Phylogenetic profile similarity with known pathways
Pairwise genome context scores
Pairwise Blast scores
Pathway or protein complex matches in target organism
Genome context matrix
    Genes and their orthologs in genome browser BioCyc pages



GENE LIST:

- EG12854 (ybgF) (b0742)
   Products of gene:
     - EG12854-MONOMER (predicted periplasmic protein)
     - CPLX0-2201 (The Tol-Pal Cell Envelope Complex)
     - CPLX0-2221 (The Colicin A Import System)
     - CPLX0-2202 (Colicin S4 Transport System)

- EG11011 (tolR) (b0738)
   Products of gene:
     - EG11011-MONOMER (TolR)
     - CPLX0-2201 (The Tol-Pal Cell Envelope Complex)
     - CPLX0-2221 (The Colicin A Import System)
     - CPLX0-2202 (Colicin S4 Transport System)

- EG11010 (tolQ) (b0737)
   Products of gene:
     - EG11010-MONOMER (TolQ)
     - CPLX0-2201 (The Tol-Pal Cell Envelope Complex)
     - CPLX0-2221 (The Colicin A Import System)
     - CPLX0-2202 (Colicin S4 Transport System)

- EG11008 (tolB) (b0740)
   Products of gene:
     - EG11008-MONOMER (TolB)
     - CPLX0-2201 (The Tol-Pal Cell Envelope Complex)
     - CPLX0-2221 (The Colicin A Import System)
     - CPLX0-2202 (Colicin S4 Transport System)

- EG11007 (tolA) (b0739)
   Products of gene:
     - EG11007-MONOMER (TolA)
     - CPLX0-2201 (The Tol-Pal Cell Envelope Complex)
     - CPLX0-2221 (The Colicin A Import System)
     - CPLX0-2202 (Colicin S4 Transport System)

- EG10684 (pal) (b0741)
   Products of gene:
     - EG10684-MONOMER (Pal)
     - CPLX0-2201 (The Tol-Pal Cell Envelope Complex)
     - CPLX0-2221 (The Colicin A Import System)
     - CPLX0-2202 (Colicin S4 Transport System)

- EG10630 (nadA) (b0750)
   Products of gene:
     - QUINOLINATE-SYNTHA-MONOMER (NadA)
     - CPLX0-7719 (quinolinate synthase)
       Reactions:
        alpha-iminosuccinate + dihydroxyacetone phosphate  ->  quinolinate + phosphate + 2 H2O
         In pathways
         PWY0-781 (aspartate superpathway)
         PYRIDNUCSYN-PWY (NAD biosynthesis I (from aspartate))



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ORGANISMS CONTAINING AT LEAST 6 GENES FROM THE GROUP:

Total number of orgs: 188
Effective number of orgs (counting one per cluster within 468 clusters): 134

Organism list
Homologs in each organism in the list
Features enriched in organism list


Follow (ncbi) link, when present, to find the set of organism features for each organism
Org ID  Org Name  # genes in group found in org  
YPSE349747 ncbi Yersinia pseudotuberculosis IP 317587
YPSE273123 ncbi Yersinia pseudotuberculosis IP 329537
YPES386656 ncbi Yersinia pestis Pestoides F7
YPES377628 ncbi Yersinia pestis Nepal5167
YPES360102 ncbi Yersinia pestis Antiqua7
YPES349746 ncbi Yersinia pestis Angola7
YPES214092 ncbi Yersinia pestis CO927
YPES187410 ncbi Yersinia pestis KIM 107
YENT393305 ncbi Yersinia enterocolitica enterocolitica 80817
XFAS405440 ncbi Xylella fastidiosa M126
XFAS183190 ncbi Xylella fastidiosa Temecula16
XFAS160492 ncbi Xylella fastidiosa 9a5c6
XAUT78245 ncbi Xanthobacter autotrophicus Py26
VVUL216895 ncbi Vibrio vulnificus CMCP66
VVUL196600 ncbi Vibrio vulnificus YJ0167
VPAR223926 ncbi Vibrio parahaemolyticus RIMD 22106337
VFIS312309 ncbi Vibrio fischeri ES1147
VEIS391735 ncbi Verminephrobacter eiseniae EF01-26
VCHO345073 ncbi Vibrio cholerae O3957
VCHO ncbi Vibrio cholerae O1 biovar El Tor str. N169617
TTUR377629 ncbi Teredinibacter turnerae T79016
TDEN292415 ncbi Thiobacillus denitrificans ATCC 252596
STYP99287 ncbi Salmonella enterica enterica serovar Typhimurium str. LT27
SSP94122 ncbi Shewanella sp. ANA-37
SSON300269 ncbi Shigella sonnei Ss0466
SSED425104 ncbi Shewanella sediminis HAW-EB37
SPRO399741 ncbi Serratia proteamaculans 5687
SPEA398579 ncbi Shewanella pealeana ATCC 7003456
SONE211586 ncbi Shewanella oneidensis MR-17
SMEL266834 ncbi Sinorhizobium meliloti 10216
SMED366394 ncbi Sinorhizobium medicae WSM4196
SLOI323850 ncbi Shewanella loihica PV-47
SHIGELLA ncbi Shigella flexneri 2a str. 2457T7
SHAL458817 ncbi Shewanella halifaxensis HAW-EB47
SGLO343509 ncbi Sodalis glossinidius morsitans7
SFUM335543 ncbi Syntrophobacter fumaroxidans MPOB6
SFLE373384 ncbi Shigella flexneri 5 str. 84017
SFLE198214 ncbi Shigella flexneri 2a str. 3017
SENT454169 ncbi Salmonella enterica enterica serovar Heidelberg str. SL4767
SENT321314 ncbi Salmonella enterica enterica serovar Choleraesuis str. SC-B677
SENT295319 ncbi Salmonella enterica enterica serovar Paratyphi A str. ATCC 91507
SENT220341 ncbi Salmonella enterica enterica serovar Typhi str. CT187
SENT209261 ncbi Salmonella enterica enterica serovar Typhi str. Ty27
SDYS300267 ncbi Shigella dysenteriae Sd1977
SDEN318161 ncbi Shewanella denitrificans OS2177
SDEG203122 ncbi Saccharophagus degradans 2-406
SBOY300268 ncbi Shigella boydii Sb2277
SBAL402882 ncbi Shewanella baltica OS1857
SBAL399599 ncbi Shewanella baltica OS1957
SACI56780 ncbi Syntrophus aciditrophicus SB6
RSOL267608 ncbi Ralstonia solanacearum GMI10006
RRUB269796 ncbi Rhodospirillum rubrum ATCC 111706
RPAL316058 ncbi Rhodopseudomonas palustris HaA26
RPAL316057 ncbi Rhodopseudomonas palustris BisB56
RPAL316056 ncbi Rhodopseudomonas palustris BisB186
RPAL316055 ncbi Rhodopseudomonas palustris BisA536
RPAL258594 ncbi Rhodopseudomonas palustris CGA0096
RMET266264 ncbi Ralstonia metallidurans CH346
RLEG216596 ncbi Rhizobium leguminosarum bv. viciae 38416
RFER338969 ncbi Rhodoferax ferrireducens T1186
REUT381666 ncbi Ralstonia eutropha H166
REUT264198 ncbi Ralstonia eutropha JMP1346
RETL347834 ncbi Rhizobium etli CFN 426
PSYR223283 ncbi Pseudomonas syringae pv. tomato str. DC30006
PSYR205918 ncbi Pseudomonas syringae pv. syringae B728a6
PSTU379731 ncbi Pseudomonas stutzeri A15016
PSP312153 ncbi Polynucleobacter necessarius asymbioticus QLW-P1DMWA-16
PSP296591 ncbi Polaromonas sp. JS6666
PPUT76869 ncbi Pseudomonas putida GB-16
PPUT351746 ncbi Pseudomonas putida F16
PPUT160488 ncbi Pseudomonas putida KT24406
PPRO298386 ncbi Photobacterium profundum SS97
PNAP365044 ncbi Polaromonas naphthalenivorans CJ26
PMEN399739 ncbi Pseudomonas mendocina ymp6
PLUT319225 ncbi Chlorobium luteolum DSM 2736
PLUM243265 ncbi Photorhabdus luminescens laumondii TTO17
PING357804 ncbi Psychromonas ingrahamii 376
PHAL326442 ncbi Pseudoalteromonas haloplanktis TAC1256
PFLU220664 ncbi Pseudomonas fluorescens Pf-56
PFLU216595 ncbi Pseudomonas fluorescens SBW256
PFLU205922 ncbi Pseudomonas fluorescens Pf0-16
PENT384676 ncbi Pseudomonas entomophila L486
PCAR338963 ncbi Pelobacter carbinolicus DSM 23806
PATL342610 ncbi Pseudoalteromonas atlantica T6c7
PAER208964 ncbi Pseudomonas aeruginosa PAO16
PAER208963 ncbi Pseudomonas aeruginosa UCBPP-PA146
OCAR504832 ncbi Oligotropha carboxidovorans OM56
OANT439375 ncbi Ochrobactrum anthropi ATCC 491886
NWIN323098 ncbi Nitrobacter winogradskyi Nb-2556
NOCE323261 ncbi Nitrosococcus oceani ATCC 197076
NMUL323848 ncbi Nitrosospira multiformis ATCC 251966
NHAM323097 ncbi Nitrobacter hamburgensis X146
NEUT335283 ncbi Nitrosomonas eutropha C916
NEUR228410 ncbi Nitrosomonas europaea ATCC 197186
MXAN246197 ncbi Myxococcus xanthus DK 16226
MSP409 Methylobacterium sp.6
MSP400668 ncbi Marinomonas sp. MWYL16
MSP266779 ncbi Chelativorans sp. BNC16
MPET420662 ncbi Methylibium petroleiphilum PM16
MMAG342108 ncbi Magnetospirillum magneticum AMB-16
MLOT266835 ncbi Mesorhizobium loti MAFF3030996
MFLA265072 ncbi Methylobacillus flagellatus KT6
MEXT419610 ncbi Methylobacterium extorquens PA16
MCAP243233 ncbi Methylococcus capsulatus Bath6
MAQU351348 ncbi Marinobacter aquaeolei VT86
LPNE400673 ncbi Legionella pneumophila Corby6
LPNE297246 ncbi Legionella pneumophila Paris6
LPNE297245 ncbi Legionella pneumophila Lens6
LPNE272624 ncbi Legionella pneumophila pneumophila Philadelphia 16
LINT363253 ncbi Lawsonia intracellularis PHE/MN1-006
LCHO395495 ncbi Leptothrix cholodnii SP-66
KPNE272620 ncbi Klebsiella pneumoniae pneumoniae MGH 785787
JSP375286 ncbi Janthinobacterium sp. Marseille6
ILOI283942 ncbi Idiomarina loihiensis L2TR6
HHAL349124 ncbi Halorhodospira halophila SL16
HCHE349521 ncbi Hahella chejuensis KCTC 23966
HARS204773 ncbi Herminiimonas arsenicoxydans6
GURA351605 ncbi Geobacter uraniireducens Rf46
GSUL243231 ncbi Geobacter sulfurreducens PCA6
GMET269799 ncbi Geobacter metallireducens GS-156
ESP42895 Enterobacter sp.7
EFER585054 ncbi Escherichia fergusonii ATCC 354697
ECOO157 ncbi Escherichia coli O157:H7 EDL9337
ECOL83334 Escherichia coli O157:H77
ECOL585397 ncbi Escherichia coli ED1a7
ECOL585057 ncbi Escherichia coli IAI397
ECOL585056 ncbi Escherichia coli UMN0267
ECOL585055 ncbi Escherichia coli 559897
ECOL585035 ncbi Escherichia coli S887
ECOL585034 ncbi Escherichia coli IAI17
ECOL481805 ncbi Escherichia coli ATCC 87397
ECOL469008 ncbi Escherichia coli BL21(DE3)7
ECOL439855 ncbi Escherichia coli SMS-3-57
ECOL413997 ncbi Escherichia coli B str. REL6067
ECOL409438 ncbi Escherichia coli SE117
ECOL405955 ncbi Escherichia coli APEC O17
ECOL364106 ncbi Escherichia coli UTI897
ECOL362663 ncbi Escherichia coli 5367
ECOL331111 ncbi Escherichia coli E24377A7
ECOL316407 ncbi Escherichia coli K-12 substr. W31107
ECOL199310 ncbi Escherichia coli CFT0737
ECAR218491 ncbi Pectobacterium atrosepticum SCRI10437
DVUL882 ncbi Desulfovibrio vulgaris Hildenborough6
DPSY177439 ncbi Desulfotalea psychrophila LSv546
DOLE96561 ncbi Desulfococcus oleovorans Hxd36
DDES207559 ncbi Desulfovibrio desulfuricans desulfuricans G206
DARO159087 ncbi Dechloromonas aromatica RCB6
CVIO243365 ncbi Chromobacterium violaceum ATCC 124726
CTEP194439 ncbi Chlorobium tepidum TLS6
CSP78 Caulobacter sp.6
CSAL290398 ncbi Chromohalobacter salexigens DSM 30436
CPSY167879 ncbi Colwellia psychrerythraea 34H7
CJAP155077 Cellvibrio japonicus6
CCHL340177 ncbi Chlorobium chlorochromatii CaD36
CBUR434922 ncbi Coxiella burnetii Dugway 5J108-1116
CBUR360115 ncbi Coxiella burnetii RSA 3316
CBUR227377 ncbi Coxiella burnetii RSA 4936
CBLO291272 ncbi Candidatus Blochmannia pennsylvanicus BPEN6
CBLO203907 ncbi Candidatus Blochmannia floridanus6
CAULO ncbi Caulobacter crescentus CB156
BVIE269482 ncbi Burkholderia vietnamiensis G46
BTHA271848 ncbi Burkholderia thailandensis E2646
BSP376 Bradyrhizobium sp.6
BSP36773 Burkholderia sp.6
BPSE320373 ncbi Burkholderia pseudomallei 6686
BPSE320372 ncbi Burkholderia pseudomallei 1710b6
BPSE272560 ncbi Burkholderia pseudomallei K962436
BPET94624 Bordetella petrii6
BMAL320389 ncbi Burkholderia mallei NCTC 102476
BMAL320388 ncbi Burkholderia mallei SAVP16
BMAL243160 ncbi Burkholderia mallei ATCC 233446
BJAP224911 ncbi Bradyrhizobium japonicum USDA 1106
BCEN331272 ncbi Burkholderia cenocepacia HI24246
BCEN331271 ncbi Burkholderia cenocepacia AU 10546
BBAC264462 ncbi Bdellovibrio bacteriovorus HD1006
BAMB398577 ncbi Burkholderia ambifaria MC40-66
BAMB339670 ncbi Burkholderia ambifaria AMMD6
ASP76114 ncbi Aromatoleum aromaticum EbN16
ASP62977 ncbi Acinetobacter sp. ADP16
ASP62928 ncbi Azoarcus sp. BH726
ASP232721 ncbi Acidovorax sp. JS426
ASAL382245 ncbi Aeromonas salmonicida salmonicida A4497
AHYD196024 Aeromonas hydrophila dhakensis7
AFER243159 ncbi Acidithiobacillus ferrooxidans ATCC 232706
AEHR187272 ncbi Alkalilimnicola ehrlichii MLHE-16
ABOR393595 ncbi Alcanivorax borkumensis SK26
ABAC204669 ncbi Candidatus Koribacter versatilis Ellin3456
AAVE397945 ncbi Acidovorax citrulli AAC00-16


Names of the homologs of the genes in the group in each of these orgs
  EG12854   EG11011   EG11010   EG11008   EG11007   EG10684   EG10630   
YPSE349747 YPSIP31758_2866YPSIP31758_2870YPSIP31758_2871YPSIP31758_2868YPSIP31758_2869YPSIP31758_2867YPSIP31758_2865
YPSE273123 YPTB1161YPTB1157YPTB1156YPTB1159YPTB1158YPTB1160YPTB1162
YPES386656 YPDSF_2570YPDSF_2574YPDSF_2575YPDSF_2572YPDSF_2573YPDSF_2571YPDSF_2569
YPES377628 YPN_2872YPN_2876YPN_2877YPN_2874YPN_2875YPN_2873YPN_2871
YPES360102 YPA_0604YPA_0600YPA_0599YPA_0602YPA_0601YPA_0603YPA_0605
YPES349746 YPANGOLA_A1399YPANGOLA_A1395YPANGOLA_A1394YPANGOLA_A1397YPANGOLA_A1396YPANGOLA_A1398YPANGOLA_A1403
YPES214092 YPO1126YPO1122YPO1121YPO1124YPO1123YPO1125YPO1127
YPES187410 Y3053Y3057Y3058Y3055Y3056Y3054Y3052
YENT393305 YE2930YE2934YE2935YE2932YE2933YE2931YE2928
XFAS405440 XFASM12_1070XFASM12_1066XFASM12_1065XFASM12_1068XFASM12_1069XFASM12_1045
XFAS183190 PD_0896PD_0892PD_0891PD_0894PD_0895PD_0869
XFAS160492 XF1895XF1899XF1900XF1897XF1896XF1923
XAUT78245 XAUT_3081XAUT_3058XAUT_3059XAUT_3056XAUT_3080XAUT_1183
VVUL216895 VV1_2172VV1_2168VV1_2167VV1_2170VV1_2171VV1_2173
VVUL196600 VV2273VV2277VV2278VV2275VV2276VV2274VV2272
VPAR223926 VP1062VP1058VP1057VP1060VP1059VP1061VP1063
VFIS312309 VF0964VF0959VF0958VF0962VF0961VF0963VF0965
VEIS391735 VEIS_1013VEIS_4795VEIS_4794VEIS_1011VEIS_1012VEIS_0026
VCHO345073 VC0395_A1427VC0395_A1431VC0395_A1432VC0395_A1429VC0395_A1430VC0395_A1428VC0395_A1426
VCHO VC1834VC1838VC1839VC1836VC1837VC1835VC1833
TTUR377629 TERTU_3427TERTU_3431TERTU_3432TERTU_3429TERTU_3428TERTU_3422
TDEN292415 TBD_2204TBD_2208TBD_2209TBD_2206TBD_2205TBD_0221
STYP99287 STM0750STM0746STM0745STM0748STM0747STM0749STM0756
SSP94122 SHEWANA3_2529SHEWANA3_2533SHEWANA3_2534SHEWANA3_2531SHEWANA3_2532SHEWANA3_2530SHEWANA3_2128
SSON300269 SSO_0694SSO_0690SSO_0689SSO_0692SSO_0691SSO_0693
SSED425104 SSED_1859SSED_1855SSED_1854SSED_1857SSED_1856SSED_1858SSED_2326
SPRO399741 SPRO_1281SPRO_1277SPRO_1276SPRO_1279SPRO_1278SPRO_1280SPRO_1282
SPEA398579 SPEA_2562SPEA_2566SPEA_2567SPEA_2564SPEA_2563SPEA_2243
SONE211586 SO_2746SO_2750SO_2751SO_2748SO_2749SO_2747SO_2342
SMEL266834 SMC02941SMC03957SMC03958SMC04461SMC02942SMC02601
SMED366394 SMED_2625SMED_1147SMED_2630SMED_2627SMED_2626SMED_0699
SLOI323850 SHEW_1529SHEW_1525SHEW_1524SHEW_1527SHEW_1526SHEW_1528SHEW_1928
SHIGELLA YBGFTOLRTOLQTOLBTOLAPALNADA
SHAL458817 SHAL_1693SHAL_1689SHAL_1688SHAL_1691SHAL_1690SHAL_1692SHAL_2231
SGLO343509 SG0888SG0884SG0883SG0886SG0885SG0887SG0889
SFUM335543 SFUM_0757SFUM_0753SFUM_0752SFUM_0755SFUM_0756SFUM_1600
SFLE373384 SFV_0594SFV_0598SFV_0599SFV_0596SFV_0597SFV_0595SFV_0590
SFLE198214 AAN42199.1AAN42203.1AAN42204.1AAN42201.1AAN42202.1AAN42200.1AAN42198.1
SENT454169 SEHA_C0877SEHA_C0873SEHA_C0872SEHA_C0875SEHA_C0874SEHA_C0876SEHA_C0883
SENT321314 SCH_0754SCH_0750SCH_0749SCH_0752SCH_0751SCH_0753SCH_0755
SENT295319 SPA1993SPA1997SPA1998SPA1995SPA1996SPA1994SPA1987
SENT220341 STY0796STY0792STY0791STY0794STY0793STY0795STY0797
SENT209261 T2126T2130T2131T2128T2129T2127T2122
SDYS300267 SDY_0690SDY_0686SDY_0685SDY_0688SDY_0687SDY_0689SDY_0694
SDEN318161 SDEN_1396SDEN_1392SDEN_1391SDEN_1394SDEN_1393SDEN_1395SDEN_1789
SDEG203122 SDE_2527SDE_2531SDE_2532SDE_2529SDE_2528SDE_2524
SBOY300268 SBO_0601SBO_0597SBO_0596SBO_0599SBO_0598SBO_0600SBO_0605
SBAL402882 SHEW185_1744SHEW185_1740SHEW185_1739SHEW185_1742SHEW185_1741SHEW185_1743SHEW185_2152
SBAL399599 SBAL195_1787SBAL195_1783SBAL195_1782SBAL195_1785SBAL195_1784SBAL195_1786SBAL195_2202
SACI56780 SYN_00190SYN_00186SYN_00185SYN_00188SYN_00189SYN_01258
RSOL267608 RSC0737RSC0733RSC0732RSC0735RSC0736RSC2449
RRUB269796 RRU_A1096RRU_A1092RRU_A1091RRU_A1094RRU_A1095RRU_A1434
RPAL316058 RPB_1816RPB_1810RPB_1809RPB_1812RPB_1815RPB_1107
RPAL316057 RPD_4143RPD_4149RPD_4150RPD_4147RPD_4144RPD_1229
RPAL316056 RPC_4747RPC_4753RPC_4754RPC_4751RPC_4748RPC_4338
RPAL316055 RPE_4701RPE_4709RPE_4710RPE_4707RPE_4702RPE_4400
RPAL258594 RPA1124RPA1118RPA1117RPA1120RPA1123RPA1055
RMET266264 RMET_2673RMET_2677RMET_2678RMET_2675RMET_2674RMET_2874
RLEG216596 RL3967RL3972RL3973RL3969RL3968PRL110617
RFER338969 RFER_2094RFER_2673RFER_2672RFER_2092RFER_2093RFER_1319
REUT381666 PHG146H16_A2831H16_A2832H16_A2829H16_A2828H16_A3038
REUT264198 REUT_A0797REUT_A0793REUT_A0792REUT_A0795REUT_A0796REUT_A2737
RETL347834 RHE_CH03460RHE_CH03465RHE_CH03466RHE_CH03462RHE_CH03461RHE_PE00441
PSYR223283 PSPTO_3970PSPTO_3974PSPTO_3975PSPTO_3972PSPTO_3971PSPTO_3959
PSYR205918 PSYR_1417PSYR_1413PSYR_1412PSYR_1415PSYR_1416PSYR_1542
PSTU379731 PST_2801PST_2805PST_2806PST_2803PST_2802PST_2796
PSP312153 PNUC_0273PNUC_0277PNUC_0278PNUC_0275PNUC_0274PNUC_1103
PSP296591 BPRO_1986BPRO_2891BPRO_2890BPRO_1984BPRO_1985BPRO_0903
PPUT76869 PPUTGB1_4194PPUTGB1_4198PPUTGB1_4199PPUTGB1_4196PPUTGB1_4195PPUTGB1_4187
PPUT351746 PPUT_1253PPUT_1249PPUT_1248PPUT_1251PPUT_1252PPUT_1260
PPUT160488 PP_1224PP_1220PP_1219PP_1222PP_1223PP_1231
PPRO298386 PBPRA2548PBPRA2552PBPRA2553PBPRA2550PBPRA2551PBPRA2549PBPRA2547
PNAP365044 PNAP_2048PNAP_2570PNAP_2922PNAP_2050PNAP_2049PNAP_0938
PMEN399739 PMEN_1279PMEN_1275PMEN_1274PMEN_1277PMEN_1278PMEN_1282
PLUT319225 PLUT_0617PLUT_0612PLUT_0611PLUT_0614PLUT_0616PLUT_0575
PLUM243265 PLU1457PLU1453PLU1452PLU1455PLU1454PLU1456PLU1468
PING357804 PING_0729PING_0725PING_0724PING_0727PING_0728PING_0730
PHAL326442 PSHAA1869PSHAA1873PSHAA1874PSHAA1871PSHAA1870PSHAA1866
PFLU220664 PFL_4756PFL_4760PFL_4761PFL_4758PFL_4757PFL_4646
PFLU216595 PFLU4906PFLU4910PFLU4911PFLU4908PFLU4907PFLU4902
PFLU205922 PFL_4400PFL_4404PFL_4405PFL_4402PFL_4401PFL_4397
PENT384676 PSEEN4085PSEEN5452PSEEN4090PSEEN4087PSEEN4086PSEEN4071
PCAR338963 PCAR_0410PCAR_2977PCAR_2978PCAR_2975PCAR_2974PCAR_1727
PATL342610 PATL_2937PATL_2941PATL_2942PATL_2939PATL_2940PATL_2938PATL_0793
PAER208964 PA0974PA0970PA0969PA0972PA0973PA1004
PAER208963 PA14_51690PA14_51740PA14_51750PA14_51720PA14_51710PA14_51330
OCAR504832 OCAR_7288OCAR_7292OCAR_7293OCAR_7290OCAR_7289OCAR_6942
OANT439375 OANT_1221OANT_1216OANT_1215OANT_1218OANT_1220OANT_0429
NWIN323098 NWI_2713NWI_2719NWI_2720NWI_2717NWI_2714NWI_2424
NOCE323261 NOC_0147NOC_0143NOC_0142NOC_0145NOC_0146NOC_0303
NMUL323848 NMUL_A2712NMUL_A2716NMUL_A2717NMUL_A2714NMUL_A2713NMUL_A0605
NHAM323097 NHAM_3508NHAM_3514NHAM_3515NHAM_3512NHAM_3509NHAM_2819
NEUT335283 NEUT_0291NEUT_0287NEUT_0286NEUT_0289NEUT_0290NEUT_2299
NEUR228410 NE0220NE0216NE0215NE0218NE0219NE0066
MXAN246197 MXAN_3000MXAN_5754MXAN_5753MXAN_5756MXAN_4581MXAN_2603
MSP409 M446_0281M446_0856M446_3390M446_3387M446_0280M446_4591
MSP400668 MMWYL1_2196MMWYL1_2192MMWYL1_2191MMWYL1_2194MMWYL1_2195MMWYL1_2197
MSP266779 MESO_3169MESO_3173MESO_3174MESO_3171MESO_3170MESO_2557
MPET420662 MPE_A1348MPE_A2955MPE_A2954MPE_A1346MPE_A1347MPE_A1554
MMAG342108 AMB3208AMB3213AMB3214AMB3211AMB3210AMB3886
MLOT266835 MLL3886MLL3890MLL3891MLL3888MLL3887MLL5835
MFLA265072 MFLA_2337MFLA_1558MFLA_2342MFLA_2339MFLA_2338MFLA_2381
MEXT419610 MEXT_4842MEXT_1617MEXT_4763MEXT_4760MEXT_4843MEXT_2644
MCAP243233 MCA_1231MCA_1227MCA_1226MCA_1229MCA_1230MCA_0376
MAQU351348 MAQU_1697MAQU_1701MAQU_1702MAQU_1699MAQU_1698MAQU_1696
LPNE400673 LPC_1528LPC_0997LPC_0998LPC_0995LPC_1529LPC_2496
LPNE297246 LPP2025LPP1531LPP1532LPP1529LPP2026LPP0861
LPNE297245 LPL2020LPL1452LPL1451LPL1454LPL2021LPL0832
LPNE272624 LPG2042LPG1573LPG1574LPG1571LPG2043LPG0799
LINT363253 LI0109LI0694LI0695LI0692LI0691LI0361
LCHO395495 LCHO_1942LCHO_0478LCHO_2941LCHO_1944LCHO_3831LCHO_2015
KPNE272620 GKPORF_B5175GKPORF_B5171GKPORF_B5170GKPORF_B5173GKPORF_B5172GKPORF_B5174GKPORF_B5184
JSP375286 MMA_2469MMA_2465MMA_2464MMA_2467MMA_2468MMA_2000
ILOI283942 IL1078IL1082IL1083IL1080IL1079IL1077
HHAL349124 HHAL_2219HHAL_2215HHAL_2214HHAL_2217HHAL_2218HHAL_0256
HCHE349521 HCH_04913HCH_04917HCH_04919HCH_04915HCH_04914HCH_04912
HARS204773 HEAR2409HEAR2405HEAR2404HEAR2407HEAR2408HEAR1089
GURA351605 GURA_3692GURA_0205GURA_0206GURA_0203GURA_0202GURA_0199
GSUL243231 GSU_2552GSU_0027GSU_0028GSU_0025GSU_2305GSU_0021
GMET269799 GMET_3542GMET_3538GMET_3537GMET_3540GMET_3499GMET_3544
ESP42895 ENT638_1240ENT638_1236ENT638_1235ENT638_1238ENT638_1237ENT638_1239ENT638_1241
EFER585054 EFER_2362EFER_2366EFER_2367EFER_2364EFER_2365EFER_2363EFER_2360
ECOO157 YBGFTOLRTOLQTOLBTOLAPALNADA
ECOL83334 ECS0777ECS0773ECS0772ECS0775ECS0774ECS0776ECS0778
ECOL585397 ECED1_0709ECED1_0705ECED1_0704ECED1_0707ECED1_0706ECED1_0708ECED1_0711
ECOL585057 ECIAI39_0717ECIAI39_0713ECIAI39_0712ECIAI39_0715ECIAI39_0714ECIAI39_0716ECIAI39_0718
ECOL585056 ECUMN_0830ECUMN_0826ECUMN_0825ECUMN_0828ECUMN_0827ECUMN_0829ECUMN_0834
ECOL585055 EC55989_0727EC55989_0723EC55989_0722EC55989_0725EC55989_0724EC55989_0726EC55989_0729
ECOL585035 ECS88_0765ECS88_0761ECS88_0760ECS88_0763ECS88_0762ECS88_0764ECS88_0766
ECOL585034 ECIAI1_0717ECIAI1_0713ECIAI1_0712ECIAI1_0715ECIAI1_0714ECIAI1_0716ECIAI1_0718
ECOL481805 ECOLC_2913ECOLC_2917ECOLC_2918ECOLC_2915ECOLC_2916ECOLC_2914ECOLC_2912
ECOL469008 ECBD_2918ECBD_2922ECBD_2923ECBD_2920ECBD_2921ECBD_2919ECBD_2917
ECOL439855 ECSMS35_0765ECSMS35_0761ECSMS35_0760ECSMS35_0763ECSMS35_0762ECSMS35_0764ECSMS35_0773
ECOL413997 ECB_00702ECB_00698ECB_00697ECB_00700ECB_00699ECB_00701ECB_00703
ECOL409438 ECSE_0802ECSE_0798ECSE_0797ECSE_0800ECSE_0799ECSE_0801ECSE_0803
ECOL405955 APECO1_1339APECO1_1343APECO1_1344APECO1_1341APECO1_1342APECO1_1340APECO1_1338
ECOL364106 UTI89_C0739UTI89_C0734UTI89_C0733UTI89_C0736UTI89_C0735UTI89_C0738UTI89_C0747
ECOL362663 ECP_0753ECP_0749ECP_0748ECP_0751ECP_0750ECP_0752ECP_0761
ECOL331111 ECE24377A_0771ECE24377A_0767ECE24377A_0766ECE24377A_0769ECE24377A_0768ECE24377A_0770ECE24377A_0777
ECOL316407 ECK0731:JW0732:B0742ECK0727:JW0728:B0738ECK0726:JW0727:B0737ECK0729:JW5100:B0740ECK0728:JW0729:B0739ECK0730:JW0731:B0741ECK0739:JW0733:B0750
ECOL199310 C0822C0817C0816C0819C0818C0821C0825
ECAR218491 ECA1375ECA1371ECA1370ECA1373ECA1372ECA1374ECA1378
DVUL882 DVU_2070DVU_2389DVU_3099DVU_3103DVU_3104DVU_1808
DPSY177439 DP2413DP2410DP2409DP2412DP2864DP2526
DOLE96561 DOLE_2208DOLE_2212DOLE_2213DOLE_2210DOLE_2209DOLE_0379
DDES207559 DDE_1580DDE_3630DDE_3629DDE_3632DDE_3633DDE_1830
DARO159087 DARO_4051DARO_4055DARO_4056DARO_4053DARO_4052DARO_3766
CVIO243365 CV_0111CV_0107CV_0551CV_0109CV_0110CV_3678
CTEP194439 CT_0640CT_0634CT_0633CT_0636CT_0638CT_0570
CSP78 CAUL_4425CAUL_0198CAUL_4430CAUL_4427CAUL_4426CAUL_4308
CSAL290398 CSAL_1855CSAL_1851CSAL_1850CSAL_1853CSAL_1854CSAL_0852
CPSY167879 CPS_1733CPS_1729CPS_1728CPS_1731CPS_1730CPS_1732CPS_1740
CJAP155077 CJA_1037CJA_1033CJA_1032CJA_1035CJA_1036CJA_2831
CCHL340177 CAG_1912CAG_1908CAG_1907CAG_1910CAG_1039CAG_1168
CBUR434922 COXBU7E912_2017COXBU7E912_0412COXBU7E912_0413COXBU7E912_2019COXBU7E912_2018COXBU7E912_1476
CBUR360115 COXBURSA331_A0177COXBURSA331_A1762COXBURSA331_A1761COXBURSA331_A0175COXBURSA331_A0176COXBURSA331_A0702
CBUR227377 CBU_0092CBU_1575CBU_1574CBU_0090CBU_0091CBU_0588
CBLO291272 BPEN_350BPEN_346BPEN_345BPEN_348BPEN_347BPEN_349
CBLO203907 BFL340BFL336BFL335BFL338BFL337BFL339
CAULO CC3228CC0322CC3233CC3230CC3229CC2912
BVIE269482 BCEP1808_0730BCEP1808_0734BCEP1808_0735BCEP1808_0732BCEP1808_0731BCEP1808_2584
BTHA271848 BTH_I1371BTH_I1375BTH_I1376BTH_I1373BTH_I1372BTH_I0776
BSP376 BRADO1178BRADO1171BRADO1170BRADO1173BRADO1176BRADO4531
BSP36773 BCEP18194_A3887BCEP18194_A3891BCEP18194_A3892BCEP18194_A3889BCEP18194_C6571BCEP18194_A5838
BPSE320373 BURPS668_3205BURPS668_3201BURPS668_3200BURPS668_3203BURPS668_3204BURPS668_0974
BPSE320372 BURPS1710B_A3527BURPS1710B_A3523BURPS1710B_A3522BURPS1710B_A3525BURPS1710B_A3526BURPS1710B_A1188
BPSE272560 BPSL2766BPSL2762BPSL2761BPSL2764BPSL2765BPSL0912
BPET94624 BPET0656BPET0660BPET0661BPET0658BPET0657BPET4877
BMAL320389 BMA10247_1951BMA10247_1947BMA10247_1946BMA10247_1949BMA10247_1950BMA10247_2105
BMAL320388 BMASAVP1_A0825BMASAVP1_A0829BMASAVP1_A0830BMASAVP1_A0827BMASAVP1_A0826BMASAVP1_A2651
BMAL243160 BMA_2083BMA_2079BMA_2078BMA_2081BMA_2082BMA_2236
BJAP224911 BLL7148BLL7154BLL7155BLL7152BLL7149BLL2542
BCEN331272 BCEN2424_0798BCEN2424_0802BCEN2424_0803BCEN2424_0800BCEN2424_4417BCEN2424_2506
BCEN331271 BCEN_0315BCEN_0319BCEN_0320BCEN_0317BCEN_3949BCEN_1895
BBAC264462 BD2474BD0181BD0182BD0179BD0633BD3735
BAMB398577 BAMMC406_0692BAMMC406_0696BAMMC406_0697BAMMC406_0694BAMMC406_4309BAMMC406_2424
BAMB339670 BAMB_0675BAMB_0679BAMB_0680BAMB_0677BAMB_3849BAMB_2553
ASP76114 EBA2654EBA2645EBA2644EBA2650EBA2652EBA4125
ASP62977 ACIAD1383ACIAD2620ACIAD2619ACIAD2622ACIAD2623ACIAD0651
ASP62928 AZO0415AZO0419AZO0420AZO0417AZO0416AZO0741
ASP232721 AJS_1725AJS_2772AJS_2771AJS_1723AJS_1724AJS_3497
ASAL382245 ASA_0747ASA_0743ASA_0742ASA_0745ASA_0744ASA_0746ASA_0757
AHYD196024 AHA_3636AHA_3640AHA_3641AHA_3638AHA_3639AHA_3637AHA_3620
AFER243159 AFE_2954AFE_2959AFE_2960AFE_2957AFE_2953AFE_2967
AEHR187272 MLG_0240MLG_0244MLG_0245MLG_0242MLG_0241MLG_0746
ABOR393595 ABO_0760ABO_0756ABO_0755ABO_0758ABO_0759ABO_0770
ABAC204669 ACID345_0590ACID345_4001ACID345_0595ACID345_0592ACID345_0591ACID345_4317
AAVE397945 AAVE_3404AAVE_2226AAVE_2227AAVE_3406AAVE_3405AAVE_3850


Organism features enriched in list (features available for 179 out of the 188 orgs in the list)
Feature    Pvalue       Num occurrences in list  Total num occurrences  
Arrangment:Chains 1.574e-10592
Disease:Bubonic_plague 0.000789866
Disease:Dysentery 0.000789866
Disease:Gastroenteritis 0.00062301013
Disease:Legionnaire's_disease 0.008680944
Endospores:No 6.232e-935211
Endospores:Yes 3.141e-8153
GC_Content_Range4:0-40 1.238e-309213
GC_Content_Range4:40-60 2.036e-11105224
GC_Content_Range4:60-100 0.000013665145
GC_Content_Range7:0-30 3.629e-6247
GC_Content_Range7:30-40 2.638e-227166
GC_Content_Range7:50-60 1.144e-1366107
GC_Content_Range7:60-70 3.691e-765134
Genome_Size_Range5:0-2 3.734e-253155
Genome_Size_Range5:2-4 0.000066841197
Genome_Size_Range5:4-6 2.990e-20105184
Genome_Size_Range5:6-10 8.058e-73047
Genome_Size_Range9:0-1 0.0029605227
Genome_Size_Range9:1-2 1.754e-221128
Genome_Size_Range9:2-3 2.198e-617120
Genome_Size_Range9:4-5 2.924e-75196
Genome_Size_Range9:5-6 6.783e-115488
Genome_Size_Range9:6-8 1.150e-72738
Gram_Stain:Gram_Neg 6.820e-33164333
Habitat:Host-associated 9.108e-641206
Habitat:Multiple 3.318e-678178
Habitat:Specialized 0.0086513953
Motility:No 5.099e-1215151
Motility:Yes 1.906e-14124267
Optimal_temp.:- 0.002847393257
Optimal_temp.:25 0.008680944
Optimal_temp.:25-30 0.00053691319
Optimal_temp.:37 0.007561223106
Oxygen_Req:Anaerobic 9.622e-614102
Oxygen_Req:Facultative 6.694e-890201
Shape:Coccus 7.825e-10482
Shape:Rod 6.507e-16149347
Shape:Spiral 0.0016089334
Temp._range:Mesophilic 0.0002079160473
Temp._range:Psychrophilic 0.004191079
Temp._range:Thermophilic 0.0002284235



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ORGANISMS CONTAINING AT MOST 1 GENES FROM THE GROUP:

Total number of orgs: 268
Effective number of orgs (counting one per cluster within 468 clusters): 205

Organism list
Homologs in each organism in the list
Features enriched in organism list


Follow (ncbi) link, when present, to find the set of organism features for each organism
Org ID  Org Name  # genes in group found in org  
WPIP955 Wolbachia pipientis1
WPIP80849 Wolbachia endosymbiont of Brugia malayi0
UURE95667 Ureaplasma urealyticum serovar 130
UURE95664 Ureaplasma urealyticum serovar 100
UPAR505682 ncbi Ureaplasma parvum serovar 3 str. ATCC 278150
UMET351160 ncbi uncultured methanogenic archaeon RC-I1
TWHI218496 ncbi Tropheryma whipplei TW08/270
TWHI203267 ncbi Tropheryma whipplei Twist0
TVOL273116 ncbi Thermoplasma volcanium GSS10
TTHE300852 ncbi Thermus thermophilus HB81
TTHE262724 ncbi Thermus thermophilus HB271
TTEN273068 ncbi Thermoanaerobacter tengcongensis MB40
TSP28240 Thermotoga sp.1
TSP1755 Thermoanaerobacter sp.0
TPSE340099 ncbi Thermoanaerobacter pseudethanolicus ATCC 332230
TPET390874 ncbi Thermotoga petrophila RKU-11
TPEN368408 ncbi Thermofilum pendens Hrk 50
TPAL243276 ncbi Treponema pallidum pallidum Nichols0
TMAR243274 ncbi Thermotoga maritima MSB81
TLET416591 ncbi Thermotoga lettingae TMO0
TKOD69014 ncbi Thermococcus kodakarensis KOD11
TFUS269800 ncbi Thermobifida fusca YX1
TERY203124 ncbi Trichodesmium erythraeum IMS1011
TDEN243275 ncbi Treponema denticola ATCC 354050
TACI273075 ncbi Thermoplasma acidophilum DSM 17280
SWOL335541 ncbi Syntrophomonas wolfei wolfei Goettingen1
STOK273063 ncbi Sulfolobus tokodaii 71
STHE322159 ncbi Streptococcus thermophilus LMD-90
STHE299768 ncbi Streptococcus thermophilus CNRZ10660
STHE292459 ncbi Symbiobacterium thermophilum IAM 148631
STHE264199 ncbi Streptococcus thermophilus LMG 183110
SSUI391296 ncbi Streptococcus suis 98HAH330
SSUI391295 ncbi Streptococcus suis 05ZYH330
SSP84588 ncbi Synechococcus sp. WH 81021
SSP64471 ncbi Synechococcus sp. CC93111
SSP321332 ncbi Synechococcus sp. JA-2-3Ba(2-13)1
SSP321327 ncbi Synechococcus sp. JA-3-3Ab1
SSP1148 ncbi Synechocystis sp. PCC 68031
SSP1131 Synechococcus sp. CC96051
SSOL273057 ncbi Sulfolobus solfataricus P21
SSAP342451 ncbi Staphylococcus saprophyticus saprophyticus ATCC 153050
SPYO370554 ncbi Streptococcus pyogenes MGAS107500
SPYO370553 ncbi Streptococcus pyogenes MGAS20960
SPYO370552 ncbi Streptococcus pyogenes MGAS102700
SPYO370551 ncbi Streptococcus pyogenes MGAS94290
SPYO319701 ncbi Streptococcus pyogenes MGAS61800
SPYO293653 ncbi Streptococcus pyogenes MGAS50050
SPYO286636 ncbi Streptococcus pyogenes MGAS103940
SPYO198466 ncbi Streptococcus pyogenes MGAS3150
SPYO193567 ncbi Streptococcus pyogenes SSI-10
SPYO186103 ncbi Streptococcus pyogenes MGAS82320
SPYO160490 ncbi Streptococcus pyogenes M1 GAS0
SPNE488221 ncbi Streptococcus pneumoniae 705850
SPNE487214 ncbi Streptococcus pneumoniae Hungary19A-60
SPNE487213 ncbi Streptococcus pneumoniae Taiwan19F-140
SPNE171101 ncbi Streptococcus pneumoniae R60
SPNE170187 ncbi Streptococcus pneumoniae G540
SPNE1313 Streptococcus pneumoniae0
SMUT210007 ncbi Streptococcus mutans UA1590
SMAR399550 ncbi Staphylothermus marinus F10
SHAE279808 ncbi Staphylococcus haemolyticus JCSC14350
SGOR29390 Streptococcus gordonii Challis0
SEPI176280 ncbi Staphylococcus epidermidis ATCC 122280
SEPI176279 ncbi Staphylococcus epidermidis RP62A0
SELO269084 ncbi Synechococcus elongatus PCC 63011
SCO ncbi Streptomyces coelicolor A3(2)0
SAVE227882 ncbi Streptomyces avermitilis MA-46800
SAUR93062 ncbi Staphylococcus aureus aureus COL0
SAUR93061 ncbi Staphylococcus aureus aureus NCTC 83250
SAUR426430 ncbi Staphylococcus aureus aureus Newman0
SAUR418127 ncbi Staphylococcus aureus aureus Mu30
SAUR367830 Staphylococcus aureus aureus USA3000
SAUR359787 ncbi Staphylococcus aureus aureus JH10
SAUR359786 ncbi Staphylococcus aureus aureus JH90
SAUR282459 ncbi Staphylococcus aureus aureus MSSA4760
SAUR282458 ncbi Staphylococcus aureus aureus MRSA2520
SAUR273036 ncbi Staphylococcus aureus RF1220
SAUR196620 ncbi Staphylococcus aureus aureus MW20
SAUR158879 ncbi Staphylococcus aureus aureus N3150
SAUR158878 ncbi Staphylococcus aureus aureus Mu500
SARE391037 ncbi Salinispora arenicola CNS-2051
SAGA211110 ncbi Streptococcus agalactiae NEM3160
SAGA208435 ncbi Streptococcus agalactiae 2603V/R0
SAGA205921 ncbi Streptococcus agalactiae A9090
SACI330779 ncbi Sulfolobus acidocaldarius DSM 6391
RSP101510 ncbi Rhodococcus jostii RHA11
RSAL288705 ncbi Renibacterium salmoninarum ATCC 332091
RALB246199 Ruminococcus albus 81
PTOR263820 ncbi Picrophilus torridus DSM 97900
PTHE370438 ncbi Pelotomaculum thermopropionicum SI1
PSP117 Pirellula sp.1
PPEN278197 ncbi Pediococcus pentosaceus ATCC 257450
PMOB403833 ncbi Petrotoga mobilis SJ950
PMAR93060 ncbi Prochlorococcus marinus MIT 92151
PMAR74547 ncbi Prochlorococcus marinus MIT 93131
PMAR74546 ncbi Prochlorococcus marinus MIT 93121
PMAR59920 ncbi Prochlorococcus marinus NATL2A1
PMAR167555 ncbi Prochlorococcus marinus NATL1A1
PMAR167546 ncbi Prochlorococcus marinus MIT 93011
PMAR167542 ncbi Prochlorococcus marinus MIT 95151
PMAR167540 Prochlorococcus marinus pastoris MED4ax1
PMAR167539 ncbi Prochlorococcus marinus marinus CCMP13751
PMAR146891 ncbi Prochlorococcus marinus AS96011
PISL384616 ncbi Pyrobaculum islandicum DSM 41840
PHOR70601 ncbi Pyrococcus horikoshii OT31
PFUR186497 ncbi Pyrococcus furiosus DSM 36381
PAST100379 Onion yellows phytoplasma0
PARS340102 ncbi Pyrobaculum arsenaticum DSM 135140
PAER178306 ncbi Pyrobaculum aerophilum IM21
PACN267747 ncbi Propionibacterium acnes KPA1712020
PABY272844 ncbi Pyrococcus abyssi GE51
OIHE221109 ncbi Oceanobacillus iheyensis HTE8310
NSP35761 Nocardioides sp.0
NSEN222891 ncbi Neorickettsia sennetsu Miyayama1
NPHA348780 ncbi Natronomonas pharaonis DSM 21601
NFAR247156 ncbi Nocardia farcinica IFM 101521
MVAN350058 ncbi Mycobacterium vanbaalenii PYR-11
MTUB419947 ncbi Mycobacterium tuberculosis H37Ra1
MTUB336982 ncbi Mycobacterium tuberculosis F111
MTHE264732 ncbi Moorella thermoacetica ATCC 390730
MTHE187420 ncbi Methanothermobacter thermautotrophicus Delta H1
MTBRV ncbi Mycobacterium tuberculosis H37Rv1
MTBCDC ncbi Mycobacterium tuberculosis CDC15511
MSYN262723 ncbi Mycoplasma synoviae 530
MSTA339860 ncbi Methanosphaera stadtmanae DSM 30911
MSP189918 ncbi Mycobacterium sp. KMS1
MSP164757 ncbi Mycobacterium sp. JLS1
MSP164756 ncbi Mycobacterium sp. MCS1
MSME246196 ncbi Mycobacterium smegmatis MC2 1551
MSED399549 ncbi Metallosphaera sedula DSM 53480
MPUL272635 ncbi Mycoplasma pulmonis UAB CTIP0
MPNE272634 ncbi Mycoplasma pneumoniae M1290
MPEN272633 ncbi Mycoplasma penetrans HF-20
MMYC272632 ncbi Mycoplasma mycoides mycoides SC str. PG10
MMOB267748 ncbi Mycoplasma mobile 163K0
MMAR444158 ncbi Methanococcus maripaludis C61
MMAR426368 ncbi Methanococcus maripaludis C71
MMAR402880 ncbi Methanococcus maripaludis C51
MMAR267377 ncbi Methanococcus maripaludis S21
MLEP272631 ncbi Mycobacterium leprae TN1
MLAB410358 ncbi Methanocorpusculum labreanum Z1
MKAN190192 ncbi Methanopyrus kandleri AV191
MJAN243232 ncbi Methanocaldococcus jannaschii DSM 26611
MHYO295358 ncbi Mycoplasma hyopneumoniae 2320
MHYO262722 ncbi Mycoplasma hyopneumoniae 74480
MHYO262719 ncbi Mycoplasma hyopneumoniae J0
MHUN323259 ncbi Methanospirillum hungatei JF-11
MGIL350054 ncbi Mycobacterium gilvum PYR-GCK1
MGEN243273 ncbi Mycoplasma genitalium G370
MFLO265311 ncbi Mesoplasma florum L10
MCAP340047 ncbi Mycoplasma capricolum capricolum ATCC 273430
MBOV410289 ncbi Mycobacterium bovis BCG str. Pasteur 1173P21
MBOV233413 ncbi Mycobacterium bovis AF2122/971
MAVI243243 ncbi Mycobacterium avium 1041
MART243272 ncbi Mycoplasma arthritidis 158L3-10
MAER449447 ncbi Microcystis aeruginosa NIES-8431
MAEO419665 ncbi Methanococcus aeolicus Nankai-31
MABS561007 ncbi Mycobacterium abscessus ATCC 199771
LXYL281090 ncbi Leifsonia xyli xyli CTCB071
LWEL386043 ncbi Listeria welshimeri serovar 6b str. SLCC53340
LSPH444177 ncbi Lysinibacillus sphaericus C3-411
LSAK314315 ncbi Lactobacillus sakei sakei 23K0
LREU557436 ncbi Lactobacillus reuteri DSM 200160
LPLA220668 ncbi Lactobacillus plantarum WCFS10
LMON265669 ncbi Listeria monocytogenes 4b F23651
LMON169963 ncbi Listeria monocytogenes EGD-e1
LMES203120 ncbi Leuconostoc mesenteroides mesenteroides ATCC 82930
LLAC272623 ncbi Lactococcus lactis lactis Il14030
LLAC272622 ncbi Lactococcus lactis cremoris SK110
LJOH257314 ncbi Lactobacillus johnsonii NCC 5330
LINT267671 ncbi Leptospira interrogans serovar Copenhageni str. Fiocruz L1-1301
LINT189518 ncbi Leptospira interrogans serovar Lai str. 566011
LINN272626 ncbi Listeria innocua Clip112621
LHEL405566 ncbi Lactobacillus helveticus DPC 45710
LGAS324831 ncbi Lactobacillus gasseri ATCC 333230
LDEL390333 ncbi Lactobacillus delbrueckii bulgaricus ATCC 118420
LDEL321956 ncbi Lactobacillus delbrueckii bulgaricus ATCC BAA-3650
LCAS321967 ncbi Lactobacillus casei ATCC 3340
LBRE387344 ncbi Lactobacillus brevis ATCC 3670
LBOR355277 ncbi Leptospira borgpetersenii serovar Hardjo-bovis JB1971
LBOR355276 ncbi Leptospira borgpetersenii serovar Hardjo-bovis L5501
LBIF456481 ncbi Leptospira biflexa serovar Patoc strain Patoc 1 (Paris)1
LBIF355278 ncbi Leptospira biflexa serovar Patoc strain Patoc 1 (Ames)1
LACI272621 ncbi Lactobacillus acidophilus NCFM0
KRAD266940 ncbi Kineococcus radiotolerans SRS302160
IHOS453591 ncbi Ignicoccus hospitalis KIN4/I1
HSP64091 ncbi Halobacterium sp. NRC-11
HSAL478009 ncbi Halobacterium salinarum R11
HMOD498761 ncbi Heliobacterium modesticaldum Ice11
HBUT415426 ncbi Hyperthermus butylicus DSM 54561
GTHE420246 ncbi Geobacillus thermodenitrificans NG80-21
FNOD381764 ncbi Fervidobacterium nodosum Rt17-B10
FMAG334413 ncbi Finegoldia magna ATCC 293280
FJOH376686 ncbi Flavobacterium johnsoniae UW1011
EFAE226185 ncbi Enterococcus faecalis V5830
DSP255470 ncbi Dehalococcoides sp. CBDB11
DSP216389 ncbi Dehalococcoides sp. BAV11
DRED349161 ncbi Desulfotomaculum reducens MI-11
DRAD243230 ncbi Deinococcus radiodurans R10
DHAF138119 ncbi Desulfitobacterium hafniense Y511
DGEO319795 ncbi Deinococcus geothermalis DSM 113001
DETH243164 ncbi Dehalococcoides ethenogenes 1951
CTET212717 ncbi Clostridium tetani E880
CSUL444179 ncbi Candidatus Sulcia muelleri GWSS0
CPHY357809 ncbi Clostridium phytofermentans ISDg0
CPER289380 ncbi Clostridium perfringens SM1011
CPER195103 ncbi Clostridium perfringens ATCC 131241
CPER195102 ncbi Clostridium perfringens 131
CNOV386415 ncbi Clostridium novyi NT1
CMIC443906 ncbi Clavibacter michiganensis michiganensis NCPPB 3820
CMIC31964 ncbi Clavibacter michiganensis sepedonicus0
CMET456442 ncbi Candidatus Methanoregula boonei 6A81
CMAQ397948 ncbi Caldivirga maquilingensis IC-1671
CKOR374847 ncbi Candidatus Korarchaeum cryptofilum OPF80
CKLU431943 ncbi Clostridium kluyveri DSM 5551
CJEI306537 ncbi Corynebacterium jeikeium K4111
CHYD246194 ncbi Carboxydothermus hydrogenoformans Z-29011
CGLU196627 ncbi Corynebacterium glutamicum ATCC 130321
CEFF196164 ncbi Corynebacterium efficiens YS-3141
CDIP257309 ncbi Corynebacterium diphtheriae NCTC 131291
CDIF272563 ncbi Clostridium difficile 6301
CDES477974 ncbi Candidatus Desulforudis audaxviator MP104C1
CBOT536232 ncbi Clostridium botulinum A2 str. Kyoto1
CBOT515621 ncbi Clostridium botulinum Ba4 str. 6571
CBOT508765 ncbi Clostridium botulinum B str. Eklund 17B0
CBOT498213 ncbi Clostridium botulinum B1 str. Okra1
CBOT441772 ncbi Clostridium botulinum F str. Langeland1
CBOT441771 ncbi Clostridium botulinum A str. Hall1
CBOT441770 ncbi Clostridium botulinum A str. ATCC 193971
CBOT36826 Clostridium botulinum A1
CBEI290402 ncbi Clostridium beijerinckii NCIMB 80521
CACE272562 ncbi Clostridium acetobutylicum ATCC 8241
BWEI315730 ncbi Bacillus weihenstephanensis KBAB41
BTUR314724 ncbi Borrelia turicatae 91E1350
BTHU412694 ncbi Bacillus thuringiensis Al Hakam1
BTHU281309 ncbi Bacillus thuringiensis serovar konkukian str. 97-271
BSP107806 ncbi Buchnera aphidicola APS (Acyrthosiphon pisum)0
BPUM315750 ncbi Bacillus pumilus SAFR-0320
BLON206672 ncbi Bifidobacterium longum NCC27051
BHER314723 ncbi Borrelia hermsii DAH0
BHAL272558 ncbi Bacillus halodurans C-1251
BGAR290434 ncbi Borrelia garinii PBi0
BCLA66692 ncbi Bacillus clausii KSM-K160
BCER572264 ncbi Bacillus cereus 03BB1021
BCER405917 Bacillus cereus W1
BCER315749 ncbi Bacillus cytotoxicus NVH 391-981
BCER288681 ncbi Bacillus cereus E33L1
BCER226900 ncbi Bacillus cereus ATCC 145790
BBUR224326 ncbi Borrelia burgdorferi B310
BAPH372461 ncbi Buchnera aphidicola Cc (Cinara cedri)0
BAPH198804 ncbi Buchnera aphidicola Sg (Schizaphis graminum)0
BANT592021 ncbi Bacillus anthracis A02481
BANT568206 ncbi Bacillus anthracis CDC 6841
BANT261594 ncbi Bacillus anthracis Ames Ancestor1
BANT260799 ncbi Bacillus anthracis Sterne1
BAFZ390236 ncbi Borrelia afzelii PKo0
AYEL322098 ncbi Aster yellows witches-broom phytoplasma AYWB0
AURANTIMONAS Aurantimonas manganoxydans SI85-9A10
ASP1667 Arthrobacter sp.1
APER272557 ncbi Aeropyrum pernix K10
AORE350688 ncbi Alkaliphilus oremlandii OhILAs0
ANAE240017 Actinomyces oris MG10
AMET293826 ncbi Alkaliphilus metalliredigens QYMF1
ALAI441768 ncbi Acholeplasma laidlawii PG-8A0
AFUL224325 ncbi Archaeoglobus fulgidus DSM 43040
ACEL351607 ncbi Acidothermus cellulolyticus 11B1
ABUT367737 ncbi Arcobacter butzleri RM40181
AAUR290340 ncbi Arthrobacter aurescens TC11


Names of the homologs of the genes in the group in each of these orgs
  EG12854   EG11011   EG11010   EG11008   EG11007   EG10684   EG10630   
WPIP955 WD_0038
WPIP80849
UURE95667
UURE95664
UPAR505682
UMET351160 RCIX1383
TWHI218496
TWHI203267
TVOL273116
TTHE300852 TTHA0984
TTHE262724 TT_C0620
TTEN273068
TSP28240 TRQ2_1185
TSP1755
TPSE340099
TPET390874 TPET_1147
TPEN368408
TPAL243276
TMAR243274 TM_1644
TLET416591
TKOD69014 TK0296
TFUS269800 TFU_0575
TERY203124 TERY_2446
TDEN243275
TACI273075
SWOL335541 SWOL_0104
STOK273063 ST1197
STHE322159
STHE299768
STHE292459 STH956
STHE264199
SSUI391296
SSUI391295
SSP84588 SYNW1316OR0261
SSP64471 GSYN1541
SSP321332 CYB_2482
SSP321327 CYA_0946
SSP1148 SLL0622
SSP1131 SYNCC9605_1456
SSOL273057 SSO0998
SSAP342451
SPYO370554
SPYO370553
SPYO370552
SPYO370551
SPYO319701
SPYO293653
SPYO286636
SPYO198466
SPYO193567
SPYO186103
SPYO160490
SPNE488221
SPNE487214
SPNE487213
SPNE171101
SPNE170187
SPNE1313
SMUT210007
SMAR399550
SHAE279808
SGOR29390
SEPI176280
SEPI176279
SELO269084 SYC0109_C
SCO
SAVE227882
SAUR93062
SAUR93061
SAUR426430
SAUR418127
SAUR367830
SAUR359787
SAUR359786
SAUR282459
SAUR282458
SAUR273036
SAUR196620
SAUR158879
SAUR158878
SARE391037 SARE_3538
SAGA211110
SAGA208435
SAGA205921
SACI330779 SACI_0023
RSP101510 RHA1_RO01038
RSAL288705 RSAL33209_1517
RALB246199 GRAORF_0388
PTOR263820
PTHE370438 PTH_0229
PSP117 RB7425
PPEN278197
PMOB403833
PMAR93060 P9215_07631
PMAR74547 PMT0661
PMAR74546 PMT9312_0678
PMAR59920 PMN2A_0112
PMAR167555 NATL1_07381
PMAR167546 P9301ORF_0745
PMAR167542 P9515ORF_0788
PMAR167540 PMM0678
PMAR167539 PRO_1013
PMAR146891 A9601_07331
PISL384616
PHOR70601 PH0013
PFUR186497 PF1977
PAST100379
PARS340102
PAER178306 PAE3115
PACN267747
PABY272844 PAB2345
OIHE221109
NSP35761
NSEN222891 NSE_0969
NPHA348780 NP2418A
NFAR247156 NFA18370
MVAN350058 MVAN_2798
MTUB419947 MRA_1604
MTUB336982 TBFG_11610
MTHE264732
MTHE187420 MTH1827
MTBRV RV1594
MTBCDC MT1630
MSYN262723
MSTA339860 MSP_0643
MSP189918 MKMS_3128
MSP164757 MJLS_3085
MSP164756 MMCS_3068
MSME246196 MSMEG_3199
MSED399549
MPUL272635
MPNE272634
MPEN272633
MMYC272632
MMOB267748
MMAR444158 MMARC6_1431
MMAR426368 MMARC7_0488
MMAR402880 MMARC5_0349
MMAR267377 MMP1242
MLEP272631 ML1225
MLAB410358 MLAB_1664
MKAN190192 MK0073
MJAN243232 MJ_0407
MHYO295358
MHYO262722
MHYO262719
MHUN323259 MHUN_2202
MGIL350054 MFLV_3619
MGEN243273
MFLO265311
MCAP340047
MBOV410289 BCG_1632
MBOV233413 MB1620
MAVI243243 MAV_3191
MART243272
MAER449447 MAE_32960
MAEO419665 MAEO_0546
MABS561007 MAB_2674C
LXYL281090 LXX16490
LWEL386043
LSPH444177 BSPH_4291
LSAK314315
LREU557436
LPLA220668
LMON265669 LMOF2365_2050
LMON169963 LMO2025
LMES203120
LLAC272623
LLAC272622
LJOH257314
LINT267671 LIC_12964
LINT189518 LA0618
LINN272626 LIN2133
LHEL405566
LGAS324831
LDEL390333
LDEL321956
LCAS321967
LBRE387344
LBOR355277 LBJ_0321
LBOR355276 LBL_2755
LBIF456481 LEPBI_I0321
LBIF355278 LBF_0312
LACI272621
KRAD266940
IHOS453591 IGNI_0641
HSP64091 VNG1882G
HSAL478009 OE3644F
HMOD498761 HM1_0666
HBUT415426 HBUT_0680
GTHE420246 GTNG_2529
FNOD381764
FMAG334413
FJOH376686 FJOH_4055
EFAE226185
DSP255470 CBDBA1681
DSP216389 DEHABAV1_1338
DRED349161 DRED_0163
DRAD243230
DHAF138119 DSY4411
DGEO319795 DGEO_1164
DETH243164 DET_1590
CTET212717
CSUL444179
CPHY357809
CPER289380 CPR_0376
CPER195103 CPF_0382
CPER195102 CPE0394
CNOV386415 NT01CX_0090
CMIC443906
CMIC31964
CMET456442 MBOO_2119
CMAQ397948 CMAQ_1792
CKOR374847
CKLU431943 CKL_0748
CJEI306537 JK0783
CHYD246194 CHY_2374
CGLU196627 CG1216
CEFF196164 CE1116
CDIP257309 DIP2257
CDIF272563 CD2372
CDES477974 DAUD_0121
CBOT536232 CLM_1612
CBOT515621 CLJ_B1551
CBOT508765
CBOT498213 CLD_3101
CBOT441772 CLI_1533
CBOT441771 CLC_1486
CBOT441770 CLB_1474
CBOT36826 CBO1448
CBEI290402 CBEI_0792
CACE272562 CAC1025
BWEI315730 BCERKBAB4_4274
BTUR314724
BTHU412694 BALH_4009
BTHU281309 BT9727_4162
BSP107806
BPUM315750
BLON206672 BL1374
BHER314723
BHAL272558 BH1220
BGAR290434
BCLA66692
BCER572264 BCA_4541
BCER405917 BCE_4513
BCER315749 BCER98_3143
BCER288681 BCE33L4173
BCER226900
BBUR224326
BAPH372461
BAPH198804
BANT592021 BAA_4677
BANT568206 BAMEG_4694
BANT261594 GBAA4660
BANT260799 BAS4325
BAFZ390236
AYEL322098
AURANTIMONAS
ASP1667 ARTH_2560
APER272557
AORE350688
ANAE240017
AMET293826 AMET_0017
ALAI441768
AFUL224325
ACEL351607 ACEL_1145
ABUT367737 ABU_2035
AAUR290340 AAUR_2534


Organism features enriched in list (features available for 248 out of the 268 orgs in the list)
Feature    Pvalue       Num occurrences in list  Total num occurrences  
Arrangment:Chains 2.170e-96592
Arrangment:Clusters 8.669e-61617
Arrangment:Pairs 0.002779160112
Disease:Toxic-shock_syndrome_and_staphylococcal_scarlet_fever 0.00007251111
Disease:Wide_range_of_infections 0.00007251111
Disease:gastroenteritis 0.0067175113
Endospores:No 1.210e-18140211
Endospores:Yes 3.106e-114553
GC_Content_Range4:0-40 1.613e-21145213
GC_Content_Range4:40-60 9.926e-963224
GC_Content_Range4:60-100 9.080e-640145
GC_Content_Range7:0-30 2.212e-83847
GC_Content_Range7:30-40 1.025e-11107166
GC_Content_Range7:50-60 3.210e-723107
GC_Content_Range7:60-70 1.549e-634134
Genome_Size_Range5:0-2 1.048e-691155
Genome_Size_Range5:2-4 0.0000327106197
Genome_Size_Range5:4-6 1.569e-1142184
Genome_Size_Range5:6-10 0.0002925947
Genome_Size_Range9:0-1 0.00002362227
Genome_Size_Range9:1-2 0.001103269128
Genome_Size_Range9:2-3 1.155e-674120
Genome_Size_Range9:4-5 7.007e-62296
Genome_Size_Range9:5-6 0.00001552088
Genome_Size_Range9:6-8 0.0002282638
Gram_Stain:Gram_Neg 5.291e-6644333
Gram_Stain:Gram_Pos 1.403e-52140150
Habitat:Specialized 0.00048473453
Motility:No 2.214e-14104151
Motility:Yes 0.000048691267
Optimal_temp.:- 0.000184989257
Optimal_temp.:30-37 1.441e-71818
Oxygen_Req:Aerobic 0.000236560185
Oxygen_Req:Anaerobic 4.064e-766102
Pathogenic_in:Animal 0.00573641966
Salinity:Non-halophilic 8.494e-665106
Shape:Coccus 2.521e-136582
Shape:Irregular_coccus 0.00070741417
Shape:Rod 5.698e-14104347
Shape:Sphere 0.00017191619
Temp._range:Hyperthermophilic 5.352e-82223
Temp._range:Mesophilic 0.0049199190473
Temp._range:Thermophilic 0.00026732535



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ORGANISMS ENRICHED FOR GROUP:




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ORGANISMS DEPLETED FOR GROUP:




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PHYLOGENETIC PROFILE SIMILARITY WITH KNOWN PATHWAYS:

Pathways or complexes with absolute value of Pearson coefficient with respect to candidate larger than 0.4 are listed below
The candidate is assumed to exist in orgs listed in section List of organisms containing most genes from the group


Pathway or complex  # Orgs containing it  # of those orgs also containing candidate  Pearson Coeff  
PWY0-1241 (ADP-L-glycero-β-D-manno-heptose biosynthesis)2181630.7128
COBALSYN-PWY (adenosylcobalamin salvage from cobinamide I)1951510.6949
GLYCOCAT-PWY (glycogen degradation I)2461690.6779
PWY-5111 (CMP-KDO biosynthesis II (from D-arabinose 5-phosphate))3001830.6471
LIPA-CORESYN-PWY (Lipid A-core biosynthesis)1761330.6205
PWY-1269 (CMP-KDO biosynthesis I)3251860.6155
PWY-5918 (heme biosynthesis I)2721690.6128
KDO-LIPASYN-PWY (KDO2-lipid A biosynthesis I)2251490.5904
HEME-BIOSYNTHESIS-II (heme biosynthesis from uroporphyrinogen-III I)2861690.5803
NAGLIPASYN-PWY (lipid IVA biosynthesis)3481870.5774
AST-PWY (arginine degradation II (AST pathway))1201010.5745
ECASYN-PWY (enterobacterial common antigen biosynthesis)1911330.5716
PWY4FS-7 (phosphatidylglycerol biosynthesis I (plastidic))2911690.5690
3-HYDROXYPHENYLACETATE-DEGRADATION-PWY (4-hydroxyphenylacetate degradation)1491140.5659
PWY0-1319 (CDP-diacylglycerol biosynthesis II)2961700.5649
PHOSLIPSYN-PWY (phospholipid biosynthesis I)2901670.5572
PWY-5913 (TCA cycle variation IV)3011680.5400
PWY-5857 (ubiquinone-10 biosynthesis (prokaryotic))1831250.5357
PWY-4041 (γ-glutamyl cycle)2791600.5331
TYRFUMCAT-PWY (tyrosine degradation I)1841250.5325
GDPRHAMSYN-PWY (GDP-D-rhamnose biosynthesis)1561110.5160
PWY-5855 (ubiquinone-7 biosynthesis (prokaryotic))1911250.5109
PWY-5148 (acyl-CoA hydrolysis)2271370.4977
GLUTATHIONESYN-PWY (glutathione biosynthesis)3391730.4964
GALACTITOLCAT-PWY (galactitol degradation)73670.4889
P344-PWY (acrylonitrile degradation)2101280.4781
PWY-5856 (ubiquinone-9 biosynthesis (prokaryotic))2551440.4768
PWY0-541 (cyclopropane fatty acid (CFA) biosynthesis)3001580.4722
REDCITCYC (TCA cycle variation II)1741130.4715
GLUCARDEG-PWY (D-glucarate degradation I)1521030.4652
PWY-6193 (3-chlorocatechol degradation II (ortho))1941190.4565
DAPLYSINESYN-PWY (lysine biosynthesis I)3421680.4554
PWY-5755 (4-hydroxybenzoate biosynthesis II (bacteria and fungi))81680.4529
PWY-5340 (sulfate activation for sulfonation)3851790.4521
GLUCONSUPER-PWY (D-gluconate degradation)2291310.4489
SULFATE-CYS-PWY (superpathway of sulfate assimilation and cysteine biosynthesis)3651730.4462
PWY-5028 (histidine degradation II)130910.4455
PWY-5669 (phosphatidylethanolamine biosynthesis I)4161850.4415
PWY-46 (putrescine biosynthesis III)138940.4409
PYRIDOXSYN-PWY (pyridoxal 5'-phosphate biosynthesis I)4221860.4387
UBISYN-PWY (ubiquinol-8 biosynthesis (prokaryotic))3981800.4361
4AMINOBUTMETAB-PWY (superpathway of 4-aminobutyrate degradation)2121230.4356
PWY-6087 (4-chlorocatechol degradation)2231270.4355
PWY0-845 (superpathway of pyridoxal 5'-phosphate biosynthesis and salvage)3291610.4323
PWY0-1335 (NADH to cytochrome bo oxidase electron transfer)112810.4298
ENTNER-DOUDOROFF-PWY (Entner-Doudoroff pathway I)2491350.4273
GLYCOLYSIS-E-D (superpathway of glycolysis and Entner-Doudoroff)2491350.4273
GLUCARGALACTSUPER-PWY (superpathway of D-glucarate and D-galactarate degradation)135910.4266
GALACTARDEG-PWY (D-galactarate degradation I)151970.4197
PWY-5188 (tetrapyrrole biosynthesis I)4391870.4179
PWY0-1329 (succinate to cytochrome bo oxidase electron transfer)96720.4168
P601-PWY (D-camphor degradation)95710.4118
PWY0-862 (cis-dodecenoyl biosynthesis)3431620.4112
PWY-6268 (adenosylcobalamin salvage from cobalamin)3171540.4081
ACETATEUTIL-PWY (superpathway of acetate utilization and formation)2371280.4068
PWY-3162 (tryptophan degradation V (side chain pathway))94700.4067
SO4ASSIM-PWY (sulfate reduction I (assimilatory))3111520.4067
PWY-5386 (methylglyoxal degradation I)3051500.4055



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PAIRWISE GENOME CONTEXT SCORE MATRIX:

  EG11011   EG11010   EG11008   EG11007   EG10684   EG10630   
EG128540.9997660.9997710.9998810.9992120.9999160.999143
EG110110.9999740.9999370.9994490.9998650.998832
EG110100.999930.9993670.9998540.998841
EG110080.9994510.9999690.998838
EG110070.9993550.99862
EG106840.998963
EG10630



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PAIRWISE BLAST SCORES:

  EG12854   EG11011   EG11010   EG11008   EG11007   EG10684   EG10630   
EG128540.0f0------
EG11011-0.0f0-----
EG11010--0.0f0----
EG11008---0.0f0---
EG11007----0.0f0--
EG10684-----0.0f0-
EG10630------0.0f0



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PATHWAYS OR PROTEIN COMPLEX MATCHES IN TARGET ORG:

For each case, all genes involved in the pathway or complex are listed. For each gene we list: a tag indicating whether the gene is part of the candidate list or not, the average and the minimum scores of the gene to the candidate list, the gene name, and its product names.

- CPLX0-2201 (The Tol-Pal Cell Envelope Complex) (degree of match pw to cand: 1.000, degree of match cand to pw: 0.857, average score: 1.000)
  Genes in pathway or complex:
   *in cand* 0.9997 0.9990 EG10684 (pal) EG10684-MONOMER (Pal)
   *in cand* 0.9997 0.9991 EG12854 (ybgF) EG12854-MONOMER (predicted periplasmic protein)
   *in cand* 0.9997 0.9988 EG11008 (tolB) EG11008-MONOMER (TolB)
   *in cand* 0.9997 0.9988 EG11011 (tolR) EG11011-MONOMER (TolR)
   *in cand* 0.9997 0.9988 EG11010 (tolQ) EG11010-MONOMER (TolQ)
   *in cand* 0.9994 0.9986 EG11007 (tolA) EG11007-MONOMER (TolA)
  Genes in candidate but not in this pathway or complex:
   *in cand* 0.9990 0.9986 EG10630 (nadA) QUINOLINATE-SYNTHA-MONOMER (NadA)

- CPLX0-2202 (Colicin S4 Transport System) (degree of match pw to cand: 0.857, degree of match cand to pw: 0.857, average score: 0.867)
  Genes in pathway or complex:
             0.5448 0.4097 EG11124 (ompW) EG11124-MONOMER (OmpW, outer membrane protein)
   *in cand* 0.9994 0.9986 EG11007 (tolA) EG11007-MONOMER (TolA)
   *in cand* 0.9997 0.9988 EG11010 (tolQ) EG11010-MONOMER (TolQ)
   *in cand* 0.9997 0.9988 EG11011 (tolR) EG11011-MONOMER (TolR)
   *in cand* 0.9997 0.9988 EG11008 (tolB) EG11008-MONOMER (TolB)
   *in cand* 0.9997 0.9991 EG12854 (ybgF) EG12854-MONOMER (predicted periplasmic protein)
   *in cand* 0.9997 0.9990 EG10684 (pal) EG10684-MONOMER (Pal)
  Genes in candidate but not in this pathway or complex:
   *in cand* 0.9990 0.9986 EG10630 (nadA) QUINOLINATE-SYNTHA-MONOMER (NadA)

- CPLX0-2221 (The Colicin A Import System) (degree of match pw to cand: 0.750, degree of match cand to pw: 0.857, average score: 0.867)
  Genes in pathway or complex:
   *in cand* 0.9994 0.9986 EG11007 (tolA) EG11007-MONOMER (TolA)
   *in cand* 0.9997 0.9988 EG11010 (tolQ) EG11010-MONOMER (TolQ)
   *in cand* 0.9997 0.9988 EG11011 (tolR) EG11011-MONOMER (TolR)
   *in cand* 0.9997 0.9988 EG11008 (tolB) EG11008-MONOMER (TolB)
   *in cand* 0.9997 0.9991 EG12854 (ybgF) EG12854-MONOMER (predicted periplasmic protein)
   *in cand* 0.9997 0.9990 EG10684 (pal) EG10684-MONOMER (Pal)
             0.7663 0.7204 EG10671 (ompF) EG10671-MONOMER (OmpF)
             0.7082 0.1816 EG10126 (btuB) EG10126-MONOMER (outer membrane receptor for transport of vitamin B12, E colicins, and bacteriophage BF23)
  Genes in candidate but not in this pathway or complex:
   *in cand* 0.9990 0.9986 EG10630 (nadA) QUINOLINATE-SYNTHA-MONOMER (NadA)



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GENOME CONTEXT INFORMATION:

Each row corresponds to a replicon in an organism, each column to a gene in the candidate. The second column indicates whether the organims was included in the list used to compute the genome context scores or not. Some organisms are not included because they are phylogenetically too similar to others already in the list.
The number in the matrix indicate the position of the homolog of the gene in the replicon. All numbers are relative to the smaller one, which is assigned a position of zero. Two columns with the same number indicate that the two genes matched the same gene in that organism.

Genome browser links for gene clusters

The links below opens a genome browser BioCyc page for each cluster of genes in the target genome. These pages shows the central gene of the cluster in the target genome and its best homolog in the reference genomes, for the genomes that contain homologs for at least 75% of the genes in the group. Only one genome per phylogenetic cluster of organisms is shown, to keep the list smaller.

EG10684 EG11007 EG11008 EG11010 EG11011 EG12854 (centered at EG11008)
EG10630 (centered at EG10630)


ORG:REPLICON:CIRC?\GENE  IN REF LIST  EG12854   EG11011   EG11010   EG11008   EG11007   EG10684   EG10630   
226/623284/623277/623336/62377/623313/623410/623
AAEO224324:0:Tyes0-----461
AAUR290340:2:Tyes------0
AAVE397945:0:Tyes1157011159-11581591
ABAC204669:0:Tyes0343652-13758
ABAU360910:0:Tyes-103-4-
ABOR393595:0:Tyes5103-416
ABUT367737:0:Tyes------0
ACAU438753:0:Tyes5103-4-
ACEL351607:0:Tyes------0
ACRY349163:8:Tyes-255025512548-01176
ADEH290397:0:Tyes-230-27002709
AEHR187272:0:Tyes0452-1505
AFER243159:0:Tyes1674-014
AHYD196024:0:Tyes2674530
AMAR234826:0:Tyes--690-440778
AMAR329726:7:Tyes---0---
AMAR329726:9:Tyes------0
AMET293826:0:Tyes------0
APHA212042:0:Tyes--865954-2920
APLE416269:0:Tyes-10324-
APLE434271:0:Tno-10324-
ASAL382245:5:Tyes51032415
ASP1667:3:Tyes------0
ASP232721:2:Tyes2101810170-11718
ASP62928:0:Tyes0452-1331
ASP62977:0:Tyes705184618451848-18490
ASP76114:2:Tyes5103-4864
AVAR240292:3:Tyes-2588----0
BABO262698:1:Tno0674-2-
BAMB339670:2:Tno-----0-
BAMB339670:3:Tno0452--1929
BAMB398577:2:Tno-----0-
BAMB398577:3:Tno0452--1760
BAMY326423:0:Tyes---444--0
BANT260799:0:Tno------0
BANT261594:2:Tno------0
BANT568206:2:Tyes------0
BANT592021:2:Tno------0
BBAC264462:0:Tyes2117230-4133283
BBAC360095:0:Tyes-230-21-
BBRO257310:0:Tyes5103-4-
BCAN483179:1:Tno0563-1-
BCEN331271:1:Tno-----0-
BCEN331271:2:Tno0452--1606
BCEN331272:2:Tyes-----0-
BCEN331272:3:Tyes0452--1705
BCER288681:0:Tno------0
BCER315749:1:Tyes------0
BCER405917:1:Tyes------0
BCER572264:1:Tno------0
BCIC186490:0:Tyes1----02
BFRA272559:1:Tyes459--0--617
BFRA295405:0:Tno459--0--638
BHAL272558:0:Tyes------0
BHEN283166:0:Tyes-674-0-
BJAP224911:0:Fyes4633463946404637-46340
BLIC279010:0:Tyes---474--0
BLON206672:0:Tyes------0
BMAL243160:1:Tno5103-4139
BMAL320388:1:Tno0452-11781
BMAL320389:1:Tyes5103-4153
BMEL224914:1:Tno5103-4-
BMEL359391:1:Tno0674-2-
BOVI236:1:Tyes0563-2-
BPAR257311:0:Tno5103-4-
BPER257313:0:Tyes0452-1-
BPET94624:0:Tyes0452-14267
BPSE272560:1:Tyes1869186518641867-18680
BPSE320372:1:Tno2218221422132216-22170
BPSE320373:1:Tno2139213521342137-21380
BQUI283165:0:Tyes-563-0-
BSP36773:0:Tyes-----0-
BSP36773:2:Tyes0452--1993
BSP376:0:Tyes8103-63201
BSUB:0:Tyes---475--0
BSUI204722:1:Tyes0674-2-
BSUI470137:0:Tno0563-1-
BTHA271848:1:Tno586590591588-5870
BTHE226186:0:Tyes2289--0--2639
BTHU281309:1:Tno------0
BTHU412694:1:Tno------0
BTRI382640:1:Tyes-896-0-
BVIE269482:7:Tyes0452-11837
BWEI315730:4:Tyes------0
BXEN266265:0:Tyes-0140----
CABO218497:0:Tyes---0-1-
CACE272562:1:Tyes------0
CAULO:0:Tyes2950029552952-29512632
CBEI290402:0:Tyes------0
CBLO203907:0:Tyes510324-
CBLO291272:0:Tno510324-
CBOT36826:1:Tno------0
CBOT441770:0:Tyes------0
CBOT441771:0:Tno------0
CBOT441772:1:Tno------0
CBOT498213:1:Tno------0
CBOT515621:2:Tyes------0
CBOT536232:0:Tno------0
CBUR227377:1:Tyes2142214210-1479
CBUR360115:1:Tno2148614850-1498
CBUR434922:2:Tno1527011529-15281013
CCAV227941:1:Tyes---0-1-
CCHL340177:0:Tyes881877876879-0134
CCON360104:2:Tyes-0-2-3-
CCUR360105:0:Tyes--01224-1223-
CDES477974:0:Tyes------0
CDIF272563:1:Tyes------0
CDIP257309:0:Tyes------0
CEFF196164:0:Fyes------0
CFEL264202:1:Tyes---1-0-
CFET360106:0:Tyes---748-7470
CGLU196627:0:Tyes------0
CHOM360107:1:Tyes---0-1-
CHUT269798:0:Tyes---1282-0-
CHYD246194:0:Tyes------0
CJAP155077:0:Tyes5103-41767
CJEI306537:0:Tyes------0
CJEJ192222:0:Tyes-68670-1-
CJEJ195099:0:Tno-66650-1-
CJEJ354242:2:Tyes---0-1-
CJEJ360109:0:Tyes---0-1-
CJEJ407148:0:Tno---0-1-
CKLU431943:1:Tyes------0
CMAQ397948:0:Tyes------0
CMET456442:0:Tyes------0
CMUR243161:1:Tyes---0-1-
CNOV386415:0:Tyes------0
CPEL335992:0:Tyes-103-427
CPER195102:1:Tyes------0
CPER195103:0:Tno------0
CPER289380:3:Tyes------0
CPNE115711:1:Tyes---0-1-
CPNE115713:0:Tno---1-0-
CPNE138677:0:Tno---1-0-
CPNE182082:0:Tno---1-0-
CPRO264201:0:Fyes---0-1-
CPSY167879:0:Tyes5103246
CRUT413404:0:Tyes-306307114-1150
CSAL290398:0:Tyes1029102510241027-10280
CSP501479:7:Fyes-103-4-
CSP78:2:Tyes4261042664263-42624144
CTEP194439:0:Tyes68626164-660
CTRA471472:0:Tyes---0-1-
CTRA471473:0:Tno---0-1-
CVES412965:0:Tyes-293294101-1020
CVIO243365:0:Tyes404542-33667
DARO159087:0:Tyes282286287284-2830
DDES207559:0:Tyes0209020892092-2093257
DETH243164:0:Tyes------0
DGEO319795:1:Tyes------0
DHAF138119:0:Tyes------0
DNOD246195:0:Tyes-341-0-
DOLE96561:0:Tyes1851185518561853-18520
DPSY177439:2:Tyes4103-470119
DRED349161:0:Tyes------0
DSHI398580:5:Tyes5103-4-
DSP216389:0:Tyes------0
DSP255470:0:Tno------0
DVUL882:1:Tyes25757512831287-12880
ECAN269484:0:Tyes-----5610
ECAR218491:0:Tyes51032410
ECHA205920:0:Tyes-----4100
ECOL199310:0:Tno6103259
ECOL316407:0:Tno51032413
ECOL331111:6:Tno5103246
ECOL362663:0:Tno51032413
ECOL364106:1:Tno61032514
ECOL405955:2:Tyes5103246
ECOL409438:6:Tyes51032413
ECOL413997:0:Tno51032413
ECOL439855:4:Tno5103246
ECOL469008:0:Tno81213101190
ECOL481805:0:Tno81213101190
ECOL585034:0:Tno51032413
ECOL585035:0:Tno51032413
ECOL585055:0:Tno51032413
ECOL585056:2:Tno51032413
ECOL585057:0:Tno51032413
ECOL585397:0:Tno51032413
ECOL83334:0:Tno51032412
ECOLI:0:Tno51032413
ECOO157:0:Tno51032412
EFER585054:1:Tyes81213101190
ELIT314225:0:Tyes--18441839-4190
ERUM254945:0:Tyes-----6080
ERUM302409:0:Tno-----5990
ESP42895:1:Tyes51032411
FALN326424:0:Tyes---0--3478
FJOH376686:0:Tyes------0
FNUC190304:0:Tyes-----3270
FPHI484022:1:Tyes-452-01429
FRANT:0:Tno-103-5592
FSP106370:0:Tyes---0--2164
FSP1855:0:Tyes---3729--0
FSUC59374:0:Tyes---1-02045
FTUL351581:0:Tno-103-5918
FTUL393011:0:Tno-103-5842
FTUL393115:0:Tyes-103-5576
FTUL401614:0:Tyes-103-5337
FTUL418136:0:Tno-586587584-5820
FTUL458234:0:Tno-103-5860
GBET391165:0:Tyes-464463466-4670
GFOR411154:0:Tyes---1370-0-
GKAU235909:1:Tyes---0--1658
GMET269799:1:Tyes45414043-047
GOXY290633:5:Tyes-103-4-
GSUL243231:0:Tyes2519674-22720
GTHE420246:1:Tyes------0
GURA351605:0:Tyes3478674-30
GVIO251221:0:Tyes329955----0
HACI382638:1:Tyes---367-3680
HARS204773:0:Tyes1249124512441247-12480
HAUR316274:2:Tyes---3263--0
HBUT415426:0:Tyes------0
HCHE349521:0:Tyes3785-40
HDUC233412:0:Tyes-231-0-
HHAL349124:0:Tyes1979197519741977-19780
HHEP235279:0:Tyes---0-11428
HINF281310:0:Tyes-34120-
HINF374930:0:Tyes-10324-
HINF71421:0:Tno-34120-
HMAR272569:8:Tyes---0--1147
HMOD498761:0:Tyes------0
HMUK485914:1:Tyes---0--1350
HNEP81032:0:Tyes-103-4536
HPY:0:Tno-----0238
HPYL357544:1:Tyes-----0247
HPYL85963:0:Tno-----0219
HSAL478009:4:Tyes------0
HSOM205914:1:Tyes-10324-
HSOM228400:0:Tno-10324-
HSP64091:2:Tno------0
HWAL362976:1:Tyes---0--911
IHOS453591:0:Tyes------0
ILOI283942:0:Tyes3785-40
JSP290400:1:Tyes7105-6-
JSP375286:0:Tyes473469468471-4720
KPNE272620:2:Tyes5103247
LBIF355278:2:Tyes------0
LBIF456481:2:Tno------0
LBOR355276:1:Tyes------0
LBOR355277:1:Tno------0
LCHO395495:0:Tyes1484024931486-33771557
LINN272626:1:Tno------0
LINT189518:1:Tyes------0
LINT267671:1:Tno------0
LINT363253:3:Tyes0582583580-579251
LMON169963:0:Tno------0
LMON265669:0:Tyes------0
LPNE272624:0:Tno1241773774771-12420
LPNE297245:1:Fno1183614613616-11840
LPNE297246:1:Fyes1168671672669-11690
LPNE400673:0:Tno522230-5231470
LSPH444177:1:Tyes------0
LXYL281090:0:Tyes------0
MABS561007:1:Tyes------0
MACE188937:0:Tyes---561--0
MAEO419665:0:Tyes------0
MAER449447:0:Tyes------0
MAQU351348:2:Tyes1563-20
MAVI243243:0:Tyes------0
MBAR269797:1:Tyes---0--236
MBOV233413:0:Tno------0
MBOV410289:0:Tno------0
MBUR259564:0:Tyes---0--1209
MCAP243233:0:Tyes790786785788-7890
MEXT419610:0:Tyes3222031433140-32231029
MFLA265072:0:Tyes7780783780-779820
MGIL350054:3:Tyes------0
MHUN323259:0:Tyes------0
MJAN243232:2:Tyes------0
MKAN190192:0:Tyes------0
MLAB410358:0:Tyes------0
MLEP272631:0:Tyes------0
MLOT266835:2:Tyes0452-11543
MMAG342108:0:Tyes0563-2678
MMAR267377:0:Tyes------0
MMAR368407:0:Tyes---0--45
MMAR394221:0:Tyes-162616271624-16230
MMAR402880:1:Tyes------0
MMAR426368:0:Tyes------0
MMAR444158:0:Tyes------0
MMAZ192952:0:Tyes---1027--0
MPET420662:1:Tyes2160216010-1208
MSME246196:0:Tyes------0
MSP164756:1:Tno------0
MSP164757:0:Tno------0
MSP189918:2:Tyes------0
MSP266779:3:Tyes610614615612-6110
MSP400668:0:Tyes5103-48
MSP409:2:Tyes156129552952-04123
MSTA339860:0:Tyes------0
MSUC221988:0:Tyes-1032--
MTBCDC:0:Tno------0
MTBRV:0:Tno------0
MTHE187420:0:Tyes------0
MTHE349307:0:Tyes---821--0
MTUB336982:0:Tno------0
MTUB419947:0:Tyes------0
MVAN350058:0:Tyes------0
MXAN246197:0:Tyes381304130403043-19070
NARO279238:0:Tyes-935934937-3030
NEUR228410:0:Tyes154150149152-1530
NEUT335283:2:Tyes5103-41982
NFAR247156:2:Tyes------0
NGON242231:0:Tyes-0----175
NHAM323097:2:Tyes658664665662-6590
NMEN122586:0:Tno-1286----0
NMEN122587:0:Tyes-0----103
NMEN272831:0:Tno-0----107
NMEN374833:0:Tno-0----107
NMUL323848:3:Tyes2087209120922089-20880
NOCE323261:1:Tyes5103-4159
NPHA348780:2:Tyes------0
NSEN222891:0:Tyes------0
NSP103690:6:Tyes-0----4068
NSP387092:0:Tyes-----8090
NWIN323098:0:Tyes293299300297-2940
OANT439375:5:Tyes799794793796-7980
OCAR504832:0:Tyes346350351348-3470
OTSU357244:0:Fyes-6916920-1022-
PABY272844:0:Tyes------0
PAER178306:0:Tyes------0
PAER208963:0:Tyes34383936-350
PAER208964:0:Tno5103-436
PARC259536:0:Tyes-618617620-2750
PATL342610:0:Tyes2165216921702167216821660
PCAR338963:0:Tyes0258625872584-25831333
PCRY335284:1:Tyes-533534531-9050
PDIS435591:0:Tyes---0--26
PENT384676:0:Tyes1413151916-150
PFLU205922:0:Tyes4896-50
PFLU216595:1:Tyes4896-50
PFLU220664:0:Tyes108112113110-1090
PFUR186497:0:Tyes------0
PGIN242619:0:Tyes---0--735
PHAL326442:1:Tyes9131411-100
PHOR70601:0:Tyes------0
PING357804:0:Tyes5103-46
PINT246198:1:Tyes---0-638997
PLUM243265:0:Fyes51032425
PLUT319225:0:Tyes42373639-410
PMAR146891:0:Tyes------0
PMAR167539:0:Tyes------0
PMAR167540:0:Tyes------0
PMAR167542:0:Tyes------0
PMAR167546:0:Tyes------0
PMAR167555:0:Tyes------0
PMAR59920:0:Tno------0
PMAR74546:0:Tyes------0
PMAR74547:0:Tyes------0
PMAR93060:0:Tyes------0
PMEN399739:0:Tyes5103-49
PMUL272843:1:Tyes-34120-
PNAP365044:8:Tyes1124164319941126-11250
PPRO298386:2:Tyes1563420
PPUT160488:0:Tno5103-412
PPUT351746:0:Tyes5103-413
PPUT76869:0:Tno8121310-90
PRUM264731:0:Tyes---0--1405
PSP117:0:Tyes------0
PSP296591:2:Tyes1074197819771072-10730
PSP312153:0:Tyes0452-1847
PSP56811:2:Tyes-652651654-01058
PSTU379731:0:Tyes59107-60
PSYR205918:0:Tyes5103-4130
PSYR223283:2:Tyes9131411-100
PTHE370438:0:Tyes------0
RAKA293614:0:Fyes0115114105-808-
RALB246199:0:Tyes------0
RBEL336407:0:Tyes102141140143-0-
RBEL391896:0:Fno34230-152-
RCAN293613:0:Fyes-0113-186-
RCAS383372:0:Tyes---3093--0
RCON272944:0:Tno011211195-913-
RDEN375451:4:Tyes-103-4-
RETL347834:3:Tyes------0
RETL347834:5:Tyes0562-1-
REUT264198:3:Tyes5103-41965
REUT381666:0:Tyes0------
REUT381666:2:Tyes-341-0208
RFEL315456:2:Tyes51413120-761-
RFER338969:1:Tyes77513541353773-7740
RLEG216596:4:Tyes------0
RLEG216596:6:Tyes0452-1-
RMAS416276:1:Tyes0919082-650-
RMET266264:2:Tyes0452-1201
RPAL258594:0:Tyes70646366-690
RPAL316055:0:Tyes296304305302-2970
RPAL316056:0:Tyes413419420417-4140
RPAL316057:0:Tyes2939294529462943-29400
RPAL316058:0:Tyes712706705708-7110
RPOM246200:1:Tyes-341-0135
RPRO272947:0:Tyes-870-458-
RRIC392021:0:Fno011211196-868-
RRIC452659:0:Tyes011411398-890-
RRUB269796:1:Tyes5103-4343
RSAL288705:0:Tyes------0
RSOL267608:1:Tyes5103-41760
RSP101510:3:Fyes------0
RSP357808:0:Tyes---1462--0
RSPH272943:4:Tyes-341-0-
RSPH349101:2:Tno-341-0-
RSPH349102:5:Tyes-103-4-
RTYP257363:0:Tno-760-463-
RXYL266117:0:Tyes---847--0
SACI330779:0:Tyes------0
SACI56780:0:Tyes5103-41644
SALA317655:1:Tyes-341-0139
SARE391037:0:Tyes------0
SBAL399599:3:Tyes510324435
SBAL402882:1:Tno510324429
SBOY300268:1:Tyes5103249
SDEG203122:0:Tyes59107-60
SDEN318161:0:Tyes510324411
SDYS300267:1:Tyes5103249
SELO269084:0:Tyes------0
SENT209261:0:Tno4896750
SENT220341:0:Tno5103249
SENT295319:0:Tno610118970
SENT321314:2:Tno51032411
SENT454169:2:Tno5103246
SERY405948:0:Tyes---0--1727
SFLE198214:0:Tyes4896750
SFLE373384:0:Tno4896750
SFUM335543:0:Tyes5103-4837
SGLO343509:3:Tyes5103247
SHAL458817:0:Tyes510324573
SHIGELLA:0:Tno610118970
SLAC55218:0:Fyes------0
SLAC55218:1:Fyes-341-0-
SLOI323850:0:Tyes510324417
SMED366394:3:Tyes190044319051902-19010
SMEL266834:2:Tyes1675167916801677-16760
SONE211586:1:Tyes4014054064034044020
SPEA398579:0:Tno353357358355-3540
SPRO399741:1:Tyes51032411
SRUB309807:1:Tyes1254--0-391571
SSED425104:0:Tyes510324507
SSOL273057:0:Tyes------0
SSON300269:1:Tyes510324-
SSP1131:0:Tyes------0
SSP1148:0:Tyes------0
SSP292414:2:Tyes-117118115-1140
SSP321327:0:Tyes------0
SSP321332:0:Tyes------0
SSP387093:0:Tyes0--2-1224
SSP644076:6:Fyes-341-0-
SSP644076:7:Fyes------0
SSP64471:0:Tyes------0
SSP84588:0:Tyes------0
SSP94122:1:Tyes4164204214184194170
STHE292459:0:Tyes---0---
STOK273063:0:Tyes------0
STRO369723:0:Tyes---0--2693
STYP99287:1:Tyes51032411
SWOL335541:0:Tyes------0
TCRU317025:0:Tyes-547-6070
TDEN292415:0:Tyes2023202720282025-20240
TDEN326298:0:Tyes---744-7430
TELO197221:0:Tyes-0----180
TERY203124:0:Tyes------0
TFUS269800:0:Tyes------0
TKOD69014:0:Tyes------0
TMAR243274:0:Tyes------0
TPET390874:0:Tno------0
TROS309801:1:Tyes---313--0
TSP28240:0:Tyes------0
TTHE262724:1:Tyes------0
TTHE300852:2:Tyes------0
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