CANDIDATE ID: 305

CANDIDATE ID: 305

NUMBER OF GENES: 7
AVERAGE SCORE:    9.9944724e-1 (range=[0.0,1.0])
AVERAGE MINIMUM BLAST P-VAL:    1.4285714e-1

Gene List
List of organisms containing most genes from the group
    Phylogenetic tree highlighting these organisms (opens new page)
List of organisms containing very few or no genes from the group
List of organisms enriched for group
List of organisms depleted for group
Phylogenetic profile similarity with known pathways
Pairwise genome context scores
Pairwise Blast scores
Pathway or protein complex matches in target organism
Genome context matrix
    Genes and their orthologs in genome browser BioCyc pages



GENE LIST:

- G7893 (idnD) (b4267)
   Products of gene:
     - IDONDEHYD-MONOMER (L-idonate 5-dehydrogenase)
       Reactions:
        NAD(P)+ + L-idonate  =  NAD(P)H + 5-dehydro-D-gluconate + H+
         In pathways
         KETOGLUCONMET-PWY (ketogluconate metabolism)
         IDNCAT-PWY (L-idonate degradation)

- G7339 (yphC) (b2545)
   Products of gene:
     - YPHC-MONOMER (predicted oxidoreductase, Zn-dependent and NAD(P)-binding)

- G6963 (ydjL) (b1776)
   Products of gene:
     - G6963-MONOMER (predicted oxidoreductase, Zn-dependent and NAD(P)-binding)

- G6961 (ydjJ) (b1774)
   Products of gene:
     - G6961-MONOMER (predicted oxidoreductase, Zn-dependent and NAD(P)-binding)

- G6838 (rspB) (b1580)
   Products of gene:
     - G6838-MONOMER (predicted oxidoreductase, Zn-dependent and NAD(P)-binding)

- EG10993 (tdh) (b3616)
   Products of gene:
     - THREODEHYD-MONOMER (Tdh)
     - THREODEHYD-CPLX (threonine dehydrogenase)
       Reactions:
        L-threonine + NAD+  ->  2-amino-3-oxobutanoate + NADH + 2 H+
         In pathways
         THREOCAT-PWY (superpathway of threonine metabolism)
         THRDLCTCAT-PWY (threonine degradation III (to methylglyoxal))
         THREONINE-DEG2-PWY (threonine degradation II)
         PWY-5448 (aminopropanol biosynthesis)
         PWY-5443 (PWY-5443)

- EG10512 (kbl) (b3617)
   Products of gene:
     - AKBLIG-MONOMER (Kbl)
     - AKBLIG-CPLX (2-amino-3-ketobutyrate CoA ligase)
       Reactions:
        glycine + acetyl-CoA  =  2-amino-3-oxobutanoate + coenzyme A + H+
         In pathways
         THREOCAT-PWY (superpathway of threonine metabolism)
         THREONINE-DEG2-PWY (threonine degradation II)



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ORGANISMS CONTAINING AT LEAST 6 GENES FROM THE GROUP:

Total number of orgs: 161
Effective number of orgs (counting one per cluster within 468 clusters): 100

Organism list
Homologs in each organism in the list
Features enriched in organism list


Follow (ncbi) link, when present, to find the set of organism features for each organism
Org ID  Org Name  # genes in group found in org  
YPSE349747 ncbi Yersinia pseudotuberculosis IP 317587
YPSE273123 ncbi Yersinia pseudotuberculosis IP 329537
YPES386656 ncbi Yersinia pestis Pestoides F7
YPES377628 ncbi Yersinia pestis Nepal5167
YPES360102 ncbi Yersinia pestis Antiqua7
YPES349746 ncbi Yersinia pestis Angola7
YPES214092 ncbi Yersinia pestis CO927
YPES187410 ncbi Yersinia pestis KIM 107
YENT393305 ncbi Yersinia enterocolitica enterocolitica 80817
XORY360094 ncbi Xanthomonas oryzae pv. oryzae PXO99A6
XORY342109 ncbi Xanthomonas oryzae pv. oryzae MAFF 3110186
XORY291331 ncbi Xanthomonas oryzae pv. oryzae KACC103316
XCAM487884 Xanthomonas campestris pv. paulliniae6
XCAM316273 ncbi Xanthomonas campestris pv. vesicatoria str. 85-106
XCAM314565 ncbi Xanthomonas campestris pv. campestris str. 80046
XCAM190485 ncbi Xanthomonas campestris pv. campestris str. ATCC 339136
VVUL216895 ncbi Vibrio vulnificus CMCP66
VVUL196600 ncbi Vibrio vulnificus YJ0166
VPAR223926 ncbi Vibrio parahaemolyticus RIMD 22106337
VFIS312309 ncbi Vibrio fischeri ES1146
TTEN273068 ncbi Thermoanaerobacter tengcongensis MB47
TLET416591 ncbi Thermotoga lettingae TMO6
STYP99287 ncbi Salmonella enterica enterica serovar Typhimurium str. LT27
SSP94122 ncbi Shewanella sp. ANA-37
SSP644076 Silicibacter sp. TrichCH4B6
SSON300269 ncbi Shigella sonnei Ss0467
SSED425104 ncbi Shewanella sediminis HAW-EB37
SSAP342451 ncbi Staphylococcus saprophyticus saprophyticus ATCC 153057
SPRO399741 ncbi Serratia proteamaculans 5687
SPEA398579 ncbi Shewanella pealeana ATCC 7003457
SONE211586 ncbi Shewanella oneidensis MR-17
SMEL266834 ncbi Sinorhizobium meliloti 10217
SMED366394 ncbi Sinorhizobium medicae WSM4197
SLOI323850 ncbi Shewanella loihica PV-47
SHIGELLA ncbi Shigella flexneri 2a str. 2457T7
SHAL458817 ncbi Shewanella halifaxensis HAW-EB47
SHAE279808 ncbi Staphylococcus haemolyticus JCSC14357
SFLE373384 ncbi Shigella flexneri 5 str. 84017
SFLE198214 ncbi Shigella flexneri 2a str. 3017
SERY405948 ncbi Saccharopolyspora erythraea NRRL 23387
SENT454169 ncbi Salmonella enterica enterica serovar Heidelberg str. SL4767
SENT321314 ncbi Salmonella enterica enterica serovar Choleraesuis str. SC-B677
SENT295319 ncbi Salmonella enterica enterica serovar Paratyphi A str. ATCC 91507
SENT220341 ncbi Salmonella enterica enterica serovar Typhi str. CT187
SENT209261 ncbi Salmonella enterica enterica serovar Typhi str. Ty27
SDYS300267 ncbi Shigella dysenteriae Sd1977
SCO ncbi Streptomyces coelicolor A3(2)6
SBOY300268 ncbi Shigella boydii Sb2277
SBAL402882 ncbi Shewanella baltica OS1857
SBAL399599 ncbi Shewanella baltica OS1957
RXYL266117 ncbi Rubrobacter xylanophilus DSM 99416
RSPH349102 ncbi Rhodobacter sphaeroides ATCC 170256
RSPH349101 ncbi Rhodobacter sphaeroides ATCC 170296
RSAL288705 ncbi Renibacterium salmoninarum ATCC 332096
RPOM246200 ncbi Ruegeria pomeroyi DSS-36
RLEG216596 ncbi Rhizobium leguminosarum bv. viciae 38417
RETL347834 ncbi Rhizobium etli CFN 427
RDEN375451 ncbi Roseobacter denitrificans OCh 1146
PSP296591 ncbi Polaromonas sp. JS6666
PMOB403833 ncbi Petrotoga mobilis SJ957
PLUM243265 ncbi Photorhabdus luminescens laumondii TTO16
PHOR70601 ncbi Pyrococcus horikoshii OT36
PHAL326442 ncbi Pseudoalteromonas haloplanktis TAC1257
PFUR186497 ncbi Pyrococcus furiosus DSM 36387
PCAR338963 ncbi Pelobacter carbinolicus DSM 23807
PATL342610 ncbi Pseudoalteromonas atlantica T6c7
PAER208964 ncbi Pseudomonas aeruginosa PAO16
PAER208963 ncbi Pseudomonas aeruginosa UCBPP-PA146
PACN267747 ncbi Propionibacterium acnes KPA1712026
PABY272844 ncbi Pyrococcus abyssi GE56
OIHE221109 ncbi Oceanobacillus iheyensis HTE8317
NSP35761 Nocardioides sp.7
MVAN350058 ncbi Mycobacterium vanbaalenii PYR-16
MTHE264732 ncbi Moorella thermoacetica ATCC 390736
MSP400668 ncbi Marinomonas sp. MWYL16
MSP189918 ncbi Mycobacterium sp. KMS6
MSP164756 ncbi Mycobacterium sp. MCS6
MSME246196 ncbi Mycobacterium smegmatis MC2 1556
MLOT266835 ncbi Mesorhizobium loti MAFF3030997
MGIL350054 ncbi Mycobacterium gilvum PYR-GCK6
LPNE400673 ncbi Legionella pneumophila Corby6
LPNE297246 ncbi Legionella pneumophila Paris6
LPNE297245 ncbi Legionella pneumophila Lens6
LPNE272624 ncbi Legionella pneumophila pneumophila Philadelphia 16
KRAD266940 ncbi Kineococcus radiotolerans SRS302166
KPNE272620 ncbi Klebsiella pneumoniae pneumoniae MGH 785787
ILOI283942 ncbi Idiomarina loihiensis L2TR6
HMAR272569 ncbi Haloarcula marismortui ATCC 430497
FNOD381764 ncbi Fervidobacterium nodosum Rt17-B16
ESP42895 Enterobacter sp.6
EFER585054 ncbi Escherichia fergusonii ATCC 354697
ECOO157 ncbi Escherichia coli O157:H7 EDL9337
ECOL83334 Escherichia coli O157:H77
ECOL585397 ncbi Escherichia coli ED1a7
ECOL585057 ncbi Escherichia coli IAI397
ECOL585056 ncbi Escherichia coli UMN0267
ECOL585055 ncbi Escherichia coli 559897
ECOL585035 ncbi Escherichia coli S887
ECOL585034 ncbi Escherichia coli IAI17
ECOL481805 ncbi Escherichia coli ATCC 87397
ECOL469008 ncbi Escherichia coli BL21(DE3)7
ECOL439855 ncbi Escherichia coli SMS-3-57
ECOL413997 ncbi Escherichia coli B str. REL6067
ECOL409438 ncbi Escherichia coli SE117
ECOL405955 ncbi Escherichia coli APEC O17
ECOL364106 ncbi Escherichia coli UTI897
ECOL362663 ncbi Escherichia coli 5367
ECOL331111 ncbi Escherichia coli E24377A7
ECOL316407 ncbi Escherichia coli K-12 substr. W31107
ECOL199310 ncbi Escherichia coli CFT0737
ECAR218491 ncbi Pectobacterium atrosepticum SCRI10437
DSHI398580 ncbi Dinoroseobacter shibae DFL 126
DRAD243230 ncbi Deinococcus radiodurans R17
DGEO319795 ncbi Deinococcus geothermalis DSM 113007
CVIO243365 ncbi Chromobacterium violaceum ATCC 124726
CSP501479 Citreicella sp. SE457
CSAL290398 ncbi Chromohalobacter salexigens DSM 30437
CDIF272563 ncbi Clostridium difficile 6306
CBUR434922 ncbi Coxiella burnetii Dugway 5J108-1117
CBUR360115 ncbi Coxiella burnetii RSA 3317
CBUR227377 ncbi Coxiella burnetii RSA 4937
CBOT508765 ncbi Clostridium botulinum B str. Eklund 17B6
CBEI290402 ncbi Clostridium beijerinckii NCIMB 80526
BWEI315730 ncbi Bacillus weihenstephanensis KBAB46
BVIE269482 ncbi Burkholderia vietnamiensis G46
BTHU412694 ncbi Bacillus thuringiensis Al Hakam7
BTHU281309 ncbi Bacillus thuringiensis serovar konkukian str. 97-277
BTHA271848 ncbi Burkholderia thailandensis E2647
BSUB ncbi Bacillus subtilis subtilis 1687
BSP376 Bradyrhizobium sp.7
BSP36773 Burkholderia sp.7
BPUM315750 ncbi Bacillus pumilus SAFR-0326
BPSE320373 ncbi Burkholderia pseudomallei 6687
BPSE320372 ncbi Burkholderia pseudomallei 1710b7
BPSE272560 ncbi Burkholderia pseudomallei K962437
BMAL320389 ncbi Burkholderia mallei NCTC 102477
BMAL320388 ncbi Burkholderia mallei SAVP17
BMAL243160 ncbi Burkholderia mallei ATCC 233447
BLIC279010 ncbi Bacillus licheniformis ATCC 145807
BJAP224911 ncbi Bradyrhizobium japonicum USDA 1107
BHAL272558 ncbi Bacillus halodurans C-1257
BCLA66692 ncbi Bacillus clausii KSM-K166
BCER572264 ncbi Bacillus cereus 03BB1027
BCER405917 Bacillus cereus W7
BCER288681 ncbi Bacillus cereus E33L7
BCER226900 ncbi Bacillus cereus ATCC 145797
BCEN331272 ncbi Burkholderia cenocepacia HI24247
BCEN331271 ncbi Burkholderia cenocepacia AU 10547
BANT592021 ncbi Bacillus anthracis A02487
BANT568206 ncbi Bacillus anthracis CDC 6847
BANT261594 ncbi Bacillus anthracis Ames Ancestor7
BANT260799 ncbi Bacillus anthracis Sterne7
BAMY326423 ncbi Bacillus amyloliquefaciens FZB427
BAMB398577 ncbi Burkholderia ambifaria MC40-67
BAMB339670 ncbi Burkholderia ambifaria AMMD7
ASP1667 Arthrobacter sp.6
ASAL382245 ncbi Aeromonas salmonicida salmonicida A4496
AMET293826 ncbi Alkaliphilus metalliredigens QYMF7
AHYD196024 Aeromonas hydrophila dhakensis7
ADEH290397 ncbi Anaeromyxobacter dehalogenans 2CP-C6
AAUR290340 ncbi Arthrobacter aurescens TC16


Names of the homologs of the genes in the group in each of these orgs
  G7893   G7339   G6963   G6961   G6838   EG10993   EG10512   
YPSE349747 YPSIP31758_0072YPSIP31758_0072YPSIP31758_0072YPSIP31758_3288YPSIP31758_1506YPSIP31758_0072YPSIP31758_0071
YPSE273123 YPTB0057YPTB0057YPTB0057YPTB0780YPTB2538YPTB0057YPTB0056
YPES386656 YPDSF_3845YPDSF_3845YPDSF_3845YPDSF_3009YPDSF_1914YPDSF_3845YPDSF_3846
YPES377628 YPN_3790YPN_3790YPN_3790YPN_0742YPN_2096YPN_3790YPN_3791
YPES360102 YPA_3482YPA_3482YPA_3482YPA_2792YPA_3482YPA_3482YPA_3483
YPES349746 YPANGOLA_A0066YPANGOLA_A0066YPANGOLA_A0066YPANGOLA_A0951YPANGOLA_A1762YPANGOLA_A0066YPANGOLA_A0065
YPES214092 YPO0060YPO0060YPO0060YPO3352YPO2502YPO0060YPO0059
YPES187410 Y0080Y0080Y0080Y0838Y1686Y0080Y0081
YENT393305 YE0074YE0074YE0074YE0074YE0074YE0074YE0073
XORY360094 XOOORF_4363XOOORF_4363XOOORF_4363XOOORF_4363XOOORF_4363XOOORF_4369
XORY342109 XOO3480XOO3480XOO3480XOO3480XOO3480XOO3486
XORY291331 XOO3684XOO3684XOO3684XOO3684XOO3684XOO3691
XCAM487884 XCC-B100_3408XCC-B100_3408XCC-B100_3408XCC-B100_3408XCC-B100_3408XCC-B100_3414
XCAM316273 XCAORF_1139XCAORF_1139XCAORF_1139XCAORF_1139XCAORF_1139XCAORF_1132
XCAM314565 XC_3290XC_3290XC_3290XC_3290XC_3290XC_3296
XCAM190485 XCC0945XCC0945XCC0945XCC0945XCC0945XCC0939
VVUL216895 VV2_1485VV2_1485VV2_1485VV2_1485VV2_1485VV2_1484
VVUL196600 VVA0305VVA0305VVA0305VVA0305VVA0305VVA0304
VPAR223926 VPA1509VPA1509VPA1509VPA1509VPA1509VPA1509VPA1510
VFIS312309 VFA0417VFA0417VFA0417VFA0417VFA0417VFA0418
TTEN273068 TTE2405TTE2405TTE2405TTE2405TTE2405TTE2405TTE2406
TLET416591 TLET_2010TLET_2010TLET_2010TLET_2010TLET_2010TLET_2009
STYP99287 STM4484STM3708STM3708STM3082STM1506STM3708STM3709
SSP94122 SHEWANA3_4105SHEWANA3_4105SHEWANA3_4105SHEWANA3_4105SHEWANA3_4105SHEWANA3_4105SHEWANA3_4104
SSP644076 SCH4B_0698SCH4B_3410SCH4B_3354SCH4B_0698SCH4B_3354SCH4B_3355
SSON300269 SSO_4452SSO_2628SSO_3788SSO_3788SSO_4504SSO_3788SSO_3787
SSED425104 SSED_0100SSED_0100SSED_0100SSED_0100SSED_0100SSED_0100SSED_0101
SSAP342451 SSP0366SSP0366SSP0366SSP0366SSP0366SSP0366SSP2205
SPRO399741 SPRO_3287SPRO_4226SPRO_4823SPRO_4823SPRO_3564SPRO_4823SPRO_4824
SPEA398579 SPEA_2286SPEA_0106SPEA_0106SPEA_2286SPEA_0106SPEA_0106SPEA_0107
SONE211586 SO_4673SO_4673SO_4673SO_4673SO_4673SO_4673SO_4674
SMEL266834 SMA0512SMC00105SMC01564SMC01992SMC02771SMC01564SMC01565
SMED366394 SMED_3685SMED_0584SMED_2224SMED_0849SMED_3230SMED_2224SMED_2225
SLOI323850 SHEW_3710SHEW_3710SHEW_3710SHEW_3710SHEW_3710SHEW_3710SHEW_3709
SHIGELLA GATDYPHCS1562TDHTDHTDHKBL
SHAL458817 SHAL_2008SHAL_4216SHAL_4216SHAL_2008SHAL_4216SHAL_4216SHAL_4215
SHAE279808 SH0215SH0215SH0215SH0215SH0215SH0215SH2457
SFLE373384 SFV_3912SFV_2593SFV_1439SFV_3912SFV_3912SFV_3912SFV_3911
SFLE198214 AAN43684.1AAN44090.1AAN43045.1AAN45103.1AAN45103.1AAN45103.1AAN45104.1
SERY405948 SACE_0927SACE_2374SACE_6389SACE_0927SACE_6389SACE_6389SACE_6390
SENT454169 SEHA_C4888SEHA_C4033SEHA_C4033SEHA_C3320SEHA_C1676SEHA_C4033SEHA_C4034
SENT321314 SCH_4340SCH_3631SCH_1307SCH_1309SCH_1523SCH_3631SCH_3632
SENT295319 SPA4284SPA3560SPA3560SPA1349SPA1349SPA3560SPA3561
SENT220341 STY3444STY4087STY4087STY1520STY1555STY4087STY4086
SENT209261 T3181T3811T3811T1461T1427T3811T3810
SDYS300267 SDY_1493SDY_4049SDY_1491SDY_1493SDY_2263SDY_4049SDY_4050
SCO SCO1682SCO0179SCO6799SCO1901SCO6799SCO6800
SBOY300268 SBO_0912SBO_2571SBO_3622SBO_3622SBO_4418SBO_3622SBO_3623
SBAL402882 SHEW185_4341SHEW185_4341SHEW185_4341SHEW185_4341SHEW185_4341SHEW185_4341SHEW185_4340
SBAL399599 SBAL195_4481SBAL195_4481SBAL195_4481SBAL195_4481SBAL195_4481SBAL195_4481SBAL195_4480
RXYL266117 RXYL_0351RXYL_3075RXYL_0351RXYL_0351RXYL_3010RXYL_1589
RSPH349102 RSPH17025_3580RSPH17025_1899RSPH17025_3580RSPH17025_0286RSPH17025_1899RSPH17025_1900
RSPH349101 RSPH17029_3621RSPH17029_1037RSPH17029_3621RSPH17029_0262RSPH17029_1037RSPH17029_1036
RSAL288705 RSAL33209_3124RSAL33209_1301RSAL33209_3124RSAL33209_3124RSAL33209_1301RSAL33209_1302
RPOM246200 SPO_2424SPO_1889SPO_3359SPO_2424SPO_3359SPO_3360
RLEG216596 PRL100389PRL110170RL3404PRL110382RL0515RL3404RL3405
RETL347834 RHE_PC00142RHE_CH01189RHE_CH02951RHE_PE00268RHE_CH00489RHE_CH02951RHE_CH02952
RDEN375451 RD1_1048RD1_0198RD1_3623RD1_1108RD1_0198RD1_0199
PSP296591 BPRO_3523BPRO_1286BPRO_3523BPRO_1286BPRO_1286BPRO_4366
PMOB403833 PMOB_1548PMOB_1548PMOB_1548PMOB_1548PMOB_1548PMOB_1548PMOB_1549
PLUM243265 PLU4845PLU4845PLU1960PLU4845PLU4845PLU4846
PHOR70601 PH0655PH0655PH0655PH0655PH0655PH0292
PHAL326442 PSHAA2315PSHAA2315PSHAA2315PSHAA2315PSHAA2315PSHAA2315PSHAA2316
PFUR186497 PF0991PF0991PF0991PF0991PF0991PF0991PF0265
PCAR338963 PCAR_2180PCAR_0330PCAR_0330PCAR_0330PCAR_2180PCAR_2180PCAR_1665
PATL342610 PATL_2551PATL_0797PATL_0062PATL_0062PATL_0797PATL_0062PATL_0061
PAER208964 PA4097PA4097PA4153PA4153PA4097PA0501
PAER208963 PA14_10900PA14_10900PA14_10230PA14_10230PA14_10900PA14_06510
PACN267747 PPA0402PPA0539PPA0402PPA0539PPA0402PPA0403
PABY272844 PAB2382PAB2382PAB2382PAB2382PAB2382PAB1244
OIHE221109 OB3353OB2752OB2752OB3353OB2815OB2752OB3054
NSP35761 NOCA_0108NOCA_1166NOCA_3165NOCA_1166NOCA_1166NOCA_3757NOCA_3756
MVAN350058 MVAN_0490MVAN_0788MVAN_5590MVAN_0788MVAN_1380MVAN_0490
MTHE264732 MOTH_0475MOTH_2268MOTH_2268MOTH_0475MOTH_0475MOTH_0475
MSP400668 MMWYL1_0234MMWYL1_3793MMWYL1_0038MMWYL1_0038MMWYL1_3793MMWYL1_3792
MSP189918 MKMS_2830MKMS_1759MKMS_2830MKMS_2830MKMS_2830MKMS_2830
MSP164756 MMCS_2786MMCS_1713MMCS_2786MMCS_2786MMCS_2786MMCS_2786
MSME246196 MSMEG_2914MSMEG_4002MSMEG_3605MSMEG_3605MSMEG_1795MSMEG_3605
MLOT266835 MLR4915MLR8299MLR8299MLR4915MLR3340MLR8299MLL9204
MGIL350054 MFLV_0660MFLV_0125MFLV_1218MFLV_0660MFLV_4997MFLV_0660
LPNE400673 LPC_2592LPC_2592LPC_2592LPC_2592LPC_2592LPC_2593
LPNE297246 LPP0757LPP0757LPP0757LPP0757LPP0757LPP0756
LPNE297245 LPL0739LPL0739LPL0739LPL0739LPL0739LPL0738
LPNE272624 LPG0702LPG0702LPG0702LPG0702LPG0702LPG0701
KRAD266940 KRAD_2131KRAD_2224KRAD_2089KRAD_2713KRAD_2713KRAD_1455
KPNE272620 GKPORF_B2956GKPORF_B3322GKPORF_B3322GKPORF_B4206GKPORF_B2956GKPORF_B3322GKPORF_B3323
ILOI283942 IL0269IL0269IL0269IL0269IL0269IL0270
HMAR272569 PNG7032PNG7351PNG7032PNG7032PNG7032PNG7032RRNAC0885
FNOD381764 FNOD_1306FNOD_1306FNOD_1306FNOD_1306FNOD_1306FNOD_1307
ESP42895 ENT638_1933ENT638_0119ENT638_0119ENT638_1933ENT638_0119ENT638_0118
EFER585054 EFER_1526EFER_3906EFER_3906EFER_2958EFER_1526EFER_3906EFER_3907
ECOO157 YDJJYPHC_2Z2815YDJJYJJNTDHKBL
ECOL83334 ECS2483ECS3411ECS2485ECS2483ECS5318ECS4494ECS4495
ECOL585397 ECED1_5121ECED1_2972ECED1_1980ECED1_1978ECED1_1748ECED1_4302ECED1_4303
ECOL585057 ECIAI39_4740ECIAI39_2748ECIAI39_1277ECIAI39_1279ECIAI39_1478ECIAI39_4137ECIAI39_4138
ECOL585056 ECUMN_4799ECUMN_2865ECUMN_2065ECUMN_2063ECUMN_1865ECUMN_4133ECUMN_4134
ECOL585055 EC55989_4825EC55989_2831EC55989_1945EC55989_1943EC55989_5020EC55989_4083EC55989_4084
ECOL585035 ECS88_1625ECS88_2715ECS88_1828ECS88_1826ECS88_1625ECS88_4033ECS88_4034
ECOL585034 ECIAI1_1630ECIAI1_2598ECIAI1_1839ECIAI1_1837ECIAI1_1630ECIAI1_3789ECIAI1_3790
ECOL481805 ECOLC_2050ECOLC_1132ECOLC_1856ECOLC_1858ECOLC_2050ECOLC_0092ECOLC_0091
ECOL469008 ECBD_3769ECBD_1139ECBD_1868ECBD_1870ECBD_2066ECBD_0109ECBD_0108
ECOL439855 ECSMS35_4748ECSMS35_2698ECSMS35_1415ECSMS35_1417ECSMS35_1620ECSMS35_3953ECSMS35_3954
ECOL413997 ECB_04133ECB_02437ECB_01745ECB_01743ECB_01549ECB_03474ECB_03475
ECOL409438 ECSE_1701ECSE_2832ECSE_1947ECSE_1945ECSE_1701ECSE_3899ECSE_3900
ECOL405955 APECO1_2127APECO1_3986APECO1_845APECO1_843APECO1_663APECO1_2839APECO1_2838
ECOL364106 UTI89_C4874UTI89_C2864UTI89_C1972UTI89_C1970UTI89_C1767UTI89_C4162UTI89_C4163
ECOL362663 ECP_4516ECP_2546ECP_1724ECP_1722ECP_1528ECP_3717ECP_3718
ECOL331111 ECE24377A_1787ECE24377A_2830ECE24377A_2000ECE24377A_1998ECE24377A_1787ECE24377A_4120ECE24377A_4121
ECOL316407 ECK4260:JW4224:B4267ECK2542:JW5842:B2545ECK1774:JW1765:B1776ECK1772:JW1763:B1774ECK1575:JW1572:B1580ECK3606:JW3591:B3616ECK3607:JW3592:B3617
ECOL199310 C5368C3067C2181C2178C1970C4443C4444
ECAR218491 ECA0918ECA0168ECA0168ECA4382ECA0918ECA0168ECA0167
DSHI398580 DSHI_4159DSHI_1078DSHI_4159DSHI_0551DSHI_4159DSHI_1182
DRAD243230 DR_1662DR_1662DR_1662DR_1662DR_1662DR_1662DR_2346
DGEO319795 DGEO_2864DGEO_0449DGEO_0449DGEO_2864DGEO_2864DGEO_0449DGEO_0057
CVIO243365 CV_1651CV_1651CV_1651CV_1651CV_1651CV_1650
CSP501479 CSE45_4894CSE45_2114CSE45_2302CSE45_4645CSE45_1184CSE45_2302CSE45_2303
CSAL290398 CSAL_2609CSAL_2912CSAL_0359CSAL_2609CSAL_2975CSAL_0359CSAL_1166
CDIF272563 CD2279CD0490CD0490CD0490CD2323CD2323
CBUR434922 COXBU7E912_1995COXBU7E912_1995COXBU7E912_1995COXBU7E912_1995COXBU7E912_1995COXBU7E912_1995COXBU7E912_1996
CBUR360115 COXBURSA331_A0201COXBURSA331_A0201COXBURSA331_A0201COXBURSA331_A0201COXBURSA331_A0201COXBURSA331_A0201COXBURSA331_A0200
CBUR227377 CBU_0112CBU_0112CBU_0112CBU_0112CBU_0112CBU_0112CBU_0111
CBOT508765 CLL_A3334CLL_A3334CLL_A0664CLL_A3334CLL_A3334CLL_A3334
CBEI290402 CBEI_0544CBEI_0544CBEI_0544CBEI_0544CBEI_0544CBEI_0223
BWEI315730 BCERKBAB4_0589BCERKBAB4_0589BCERKBAB4_0589BCERKBAB4_0589BCERKBAB4_0589BCERKBAB4_0534
BVIE269482 BCEP1808_5062BCEP1808_3787BCEP1808_5062BCEP1808_5062BCEP1808_3787BCEP1808_3788
BTHU412694 BALH_0616BALH_2794BALH_0616BALH_0616BALH_0616BALH_0616BALH_0558
BTHU281309 BT9727_0585BT9727_2881BT9727_0585BT9727_0585BT9727_0585BT9727_0585BT9727_0530
BTHA271848 BTH_II1176BTH_II0428BTH_II0006BTH_II1176BTH_I2432BTH_II0006BTH_II0005
BSUB BSU06150BSU06150BSU16990BSU06150BSU12330BSU16990BSU17000
BSP376 BRADO1804BRADO6611BRADO1804BRADO1804BRADO1804BRADO1804BRADO6672
BSP36773 BCEP18194_A3728BCEP18194_C7277BCEP18194_B1325BCEP18194_B3068BCEP18194_B0887BCEP18194_B3178BCEP18194_B3179
BPUM315750 BPUM_1603BPUM_1170BPUM_1603BPUM_1170BPUM_1603BPUM_1604
BPSE320373 BURPS668_A1742BURPS668_A2784BURPS668_A0006BURPS668_A1742BURPS668_A2097BURPS668_A0006BURPS668_A0005
BPSE320372 BURPS1710B_B0275BURPS1710B_B1230BURPS1710B_B1776BURPS1710B_B0275BURPS1710B_B0612BURPS1710B_B1776BURPS1710B_B1775
BPSE272560 BPSS1235BPSS1944BPSS0006BPSS1235BPSS1479BPSS0006BPSS0005
BMAL320389 BMA10247_A1235BMA10247_A0157BMA10247_A0007BMA10247_A1235BMA10247_A1649BMA10247_A0007BMA10247_A0006
BMAL320388 BMASAVP1_0068BMASAVP1_1300BMASAVP1_1152BMASAVP1_0068BMASAVP1_0584BMASAVP1_1152BMASAVP1_1151
BMAL243160 BMA_A1076BMA_A0132BMA_A0006BMA_A1076BMA_A0765BMA_A0006BMA_A0005
BLIC279010 BL03803BL03658BL03658BL03803BL03803BL03658BL03659
BJAP224911 BLR5278BLL5655BLR5278BLR5278BLR5278BLR5278BLL1200
BHAL272558 BH3949BH0189BH0189BH3949BH0189BH0189BH3907
BCLA66692 ABC1039ABC3344ABC3344ABC1039ABC0630ABC3344
BCER572264 BCA_0711BCA_3189BCA_0711BCA_0711BCA_0711BCA_0711BCA_0654
BCER405917 BCE_0742BCE_3145BCE_0742BCE_0742BCE_0742BCE_0742BCE_0688
BCER288681 BCE33L0584BCE33L0739BCE33L0584BCE33L0584BCE33L0584BCE33L0584BCE33L0530
BCER226900 BC_0668BC_3092BC_0668BC_0668BC_0668BC_0668BC_0621
BCEN331272 BCEN2424_0642BCEN2424_4438BCEN2424_4523BCEN2424_5797BCEN2424_4817BCEN2424_5702BCEN2424_5701
BCEN331271 BCEN_0159BCEN_3928BCEN_3845BCEN_5063BCEN_3550BCEN_5157BCEN_5158
BANT592021 BAA_0758BAA_3180BAA_0758BAA_0758BAA_0758BAA_0758BAA_0702
BANT568206 BAMEG_3911BAMEG_1479BAMEG_3911BAMEG_3911BAMEG_3911BAMEG_3911BAMEG_3967
BANT261594 GBAA0675GBAA3131GBAA0675GBAA0675GBAA0675GBAA0675GBAA0620
BANT260799 BAS0641BAS2912BAS0641BAS0641BAS0641BAS0641BAS0586
BAMY326423 RBAM_006540RBAM_006540RBAM_016830RBAM_006540RBAM_017960RBAM_016830RBAM_016840
BAMB398577 BAMMC406_5131BAMMC406_4330BAMMC406_4416BAMMC406_4416BAMMC406_5131BAMMC406_3116BAMMC406_3115
BAMB339670 BAMB_4598BAMB_4973BAMB_3953BAMB_3953BAMB_4598BAMB_4973BAMB_4972
ASP1667 ARTH_2451ARTH_1821ARTH_1310ARTH_1804ARTH_1310ARTH_1311
ASAL382245 ASA_0090ASA_0090ASA_0090ASA_0090ASA_0090ASA_0091
AMET293826 AMET_0590AMET_0590AMET_0590AMET_0590AMET_0554AMET_0590AMET_3634
AHYD196024 AHA_4235AHA_4235AHA_4235AHA_4235AHA_4235AHA_4235AHA_4234
ADEH290397 ADEH_2095ADEH_2095ADEH_2095ADEH_2095ADEH_2095ADEH_2094
AAUR290340 AAUR_2421AAUR_1903AAUR_1459AAUR_1459AAUR_1459AAUR_1460


Organism features enriched in list (features available for 150 out of the 161 orgs in the list)
Feature    Pvalue       Num occurrences in list  Total num occurrences  
Arrangment:Pairs 0.000790242112
Disease:Anthrax 0.004252744
Disease:Bubonic_plague 0.000269066
Disease:Dysentery 0.000269066
Disease:Gastroenteritis 0.00012461013
Disease:Legionnaire's_disease 0.004252744
Endospores:No 0.000765139211
Endospores:Yes 0.00158182353
GC_Content_Range4:0-40 2.602e-926213
GC_Content_Range4:40-60 0.000071477224
GC_Content_Range4:60-100 0.009448947145
GC_Content_Range7:0-30 0.0003924347
GC_Content_Range7:30-40 8.969e-623166
GC_Content_Range7:50-60 0.001139340107
Genome_Size_Range5:0-2 2.072e-184155
Genome_Size_Range5:2-4 1.712e-726197
Genome_Size_Range5:4-6 7.491e-2498184
Genome_Size_Range5:6-10 0.00061462247
Genome_Size_Range9:1-2 4.831e-144128
Genome_Size_Range9:2-3 3.897e-711120
Genome_Size_Range9:4-5 4.733e-74596
Genome_Size_Range9:5-6 4.874e-145388
Genome_Size_Range9:6-8 0.00162391838
Gram_Stain:Gram_Neg 0.0000725105333
Habitat:Terrestrial 0.00098401631
Motility:No 1.083e-716151
Motility:Yes 6.968e-13106267
Oxygen_Req:Anaerobic 0.000097312102
Oxygen_Req:Facultative 9.222e-776201
Pathogenic_in:Animal 0.00176082766
Pathogenic_in:No 0.007335947226
Shape:Coccus 0.0002665982
Shape:Rod 7.355e-16129347
Temp._range:Mesophilic 0.0001443136473



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ORGANISMS CONTAINING AT MOST 1 GENES FROM THE GROUP:

Total number of orgs: 305
Effective number of orgs (counting one per cluster within 468 clusters): 260

Organism list
Homologs in each organism in the list
Features enriched in organism list


Follow (ncbi) link, when present, to find the set of organism features for each organism
Org ID  Org Name  # genes in group found in org  
ZMOB264203 ncbi Zymomonas mobilis mobilis ZM41
XFAS405440 ncbi Xylella fastidiosa M121
XFAS183190 ncbi Xylella fastidiosa Temecula11
XFAS160492 ncbi Xylella fastidiosa 9a5c1
WSUC273121 ncbi Wolinella succinogenes DSM 17400
WPIP955 Wolbachia pipientis0
WPIP80849 Wolbachia endosymbiont of Brugia malayi0
UURE95667 Ureaplasma urealyticum serovar 130
UURE95664 Ureaplasma urealyticum serovar 100
UPAR505682 ncbi Ureaplasma parvum serovar 3 str. ATCC 278150
UMET351160 ncbi uncultured methanogenic archaeon RC-I0
TWHI218496 ncbi Tropheryma whipplei TW08/271
TWHI203267 ncbi Tropheryma whipplei Twist1
TVOL273116 ncbi Thermoplasma volcanium GSS11
TSP28240 Thermotoga sp.0
TROS309801 ncbi Thermomicrobium roseum DSM 51591
TPET390874 ncbi Thermotoga petrophila RKU-10
TPEN368408 ncbi Thermofilum pendens Hrk 50
TPAL243276 ncbi Treponema pallidum pallidum Nichols0
TMAR243274 ncbi Thermotoga maritima MSB80
TFUS269800 ncbi Thermobifida fusca YX0
TERY203124 ncbi Trichodesmium erythraeum IMS1011
TELO197221 ncbi Thermosynechococcus elongatus BP-10
TDEN326298 ncbi Sulfurimonas denitrificans DSM 12510
TDEN292415 ncbi Thiobacillus denitrificans ATCC 252591
TDEN243275 ncbi Treponema denticola ATCC 354051
TCRU317025 ncbi Thiomicrospira crunogena XCL-21
TACI273075 ncbi Thermoplasma acidophilum DSM 17281
STRO369723 ncbi Salinispora tropica CNB-4400
STHE322159 ncbi Streptococcus thermophilus LMD-90
STHE299768 ncbi Streptococcus thermophilus CNRZ10660
STHE264199 ncbi Streptococcus thermophilus LMG 183110
SSUI391296 ncbi Streptococcus suis 98HAH330
SSUI391295 ncbi Streptococcus suis 05ZYH330
SSP84588 ncbi Synechococcus sp. WH 81020
SSP64471 ncbi Synechococcus sp. CC93110
SSP387093 ncbi Sulfurovum sp. NBC37-10
SSP321332 ncbi Synechococcus sp. JA-2-3Ba(2-13)0
SSP321327 ncbi Synechococcus sp. JA-3-3Ab0
SSP1148 ncbi Synechocystis sp. PCC 68030
SSP1131 Synechococcus sp. CC96050
SRUB309807 ncbi Salinibacter ruber DSM 138551
SPYO370553 ncbi Streptococcus pyogenes MGAS20961
SPYO370551 ncbi Streptococcus pyogenes MGAS94291
SPYO193567 ncbi Streptococcus pyogenes SSI-11
SPNE488221 ncbi Streptococcus pneumoniae 705851
SPNE487214 ncbi Streptococcus pneumoniae Hungary19A-61
SPNE171101 ncbi Streptococcus pneumoniae R61
SPNE170187 ncbi Streptococcus pneumoniae G541
SPNE1313 Streptococcus pneumoniae1
SMUT210007 ncbi Streptococcus mutans UA1590
SMAR399550 ncbi Staphylothermus marinus F10
SELO269084 ncbi Synechococcus elongatus PCC 63010
SALA317655 ncbi Sphingopyxis alaskensis RB22561
SAGA211110 ncbi Streptococcus agalactiae NEM3161
SAGA208435 ncbi Streptococcus agalactiae 2603V/R0
SAGA205921 ncbi Streptococcus agalactiae A9090
RTYP257363 ncbi Rickettsia typhi Wilmington0
RRIC452659 ncbi Rickettsia rickettsii Iowa0
RRIC392021 ncbi Rickettsia rickettsii Sheila Smith0
RPRO272947 ncbi Rickettsia prowazekii Madrid E0
RPAL316058 ncbi Rhodopseudomonas palustris HaA21
RPAL316057 ncbi Rhodopseudomonas palustris BisB51
RPAL316055 ncbi Rhodopseudomonas palustris BisA531
RMET266264 ncbi Ralstonia metallidurans CH341
RMAS416276 ncbi Rickettsia massiliae MTU50
RFER338969 ncbi Rhodoferax ferrireducens T1180
RFEL315456 ncbi Rickettsia felis URRWXCal20
RCON272944 ncbi Rickettsia conorii Malish 70
RCAS383372 ncbi Roseiflexus castenholzii DSM 139411
RCAN293613 ncbi Rickettsia canadensis McKiel0
RBEL391896 ncbi Rickettsia bellii OSU 85-3890
RBEL336407 ncbi Rickettsia bellii RML369-C0
RALB246199 Ruminococcus albus 80
RAKA293614 ncbi Rickettsia akari Hartford0
PTOR263820 ncbi Picrophilus torridus DSM 97901
PSYR223283 ncbi Pseudomonas syringae pv. tomato str. DC30001
PSTU379731 ncbi Pseudomonas stutzeri A15011
PSP56811 Psychrobacter sp.0
PSP312153 ncbi Polynucleobacter necessarius asymbioticus QLW-P1DMWA-11
PRUM264731 ncbi Prevotella ruminicola 231
PPEN278197 ncbi Pediococcus pentosaceus ATCC 257450
PMUL272843 ncbi Pasteurella multocida multocida Pm700
PMAR93060 ncbi Prochlorococcus marinus MIT 92150
PMAR74547 ncbi Prochlorococcus marinus MIT 93130
PMAR74546 ncbi Prochlorococcus marinus MIT 93120
PMAR59920 ncbi Prochlorococcus marinus NATL2A0
PMAR167555 ncbi Prochlorococcus marinus NATL1A0
PMAR167546 ncbi Prochlorococcus marinus MIT 93010
PMAR167542 ncbi Prochlorococcus marinus MIT 95150
PMAR167540 Prochlorococcus marinus pastoris MED4ax0
PMAR167539 ncbi Prochlorococcus marinus marinus CCMP13750
PMAR146891 ncbi Prochlorococcus marinus AS96010
PLUT319225 ncbi Chlorobium luteolum DSM 2731
PINT246198 Prevotella intermedia 171
PGIN242619 ncbi Porphyromonas gingivalis W831
PENT384676 ncbi Pseudomonas entomophila L481
PCRY335284 ncbi Psychrobacter cryohalolentis K50
PAST100379 Onion yellows phytoplasma0
PARC259536 ncbi Psychrobacter arcticus 273-40
OTSU357244 ncbi Orientia tsutsugamushi Boryong0
NWIN323098 ncbi Nitrobacter winogradskyi Nb-2550
NSP387092 ncbi Nitratiruptor sp. SB155-20
NSP103690 ncbi Nostoc sp. PCC 71201
NSEN222891 ncbi Neorickettsia sennetsu Miyayama0
NPHA348780 ncbi Natronomonas pharaonis DSM 21601
NOCE323261 ncbi Nitrosococcus oceani ATCC 197071
NMUL323848 ncbi Nitrosospira multiformis ATCC 251961
NMEN374833 ncbi Neisseria meningitidis 0534421
NMEN272831 ncbi Neisseria meningitidis FAM180
NMEN122587 ncbi Neisseria meningitidis Z24910
NMEN122586 ncbi Neisseria meningitidis MC581
NHAM323097 ncbi Nitrobacter hamburgensis X141
NGON242231 ncbi Neisseria gonorrhoeae FA 10900
NEUT335283 ncbi Nitrosomonas eutropha C911
NEUR228410 ncbi Nitrosomonas europaea ATCC 197181
MTUB419947 ncbi Mycobacterium tuberculosis H37Ra1
MTUB336982 ncbi Mycobacterium tuberculosis F111
MTHE349307 ncbi Methanosaeta thermophila PT0
MTHE187420 ncbi Methanothermobacter thermautotrophicus Delta H0
MTBRV ncbi Mycobacterium tuberculosis H37Rv1
MTBCDC ncbi Mycobacterium tuberculosis CDC15511
MSYN262723 ncbi Mycoplasma synoviae 530
MSTA339860 ncbi Methanosphaera stadtmanae DSM 30910
MSP409 Methylobacterium sp.0
MPUL272635 ncbi Mycoplasma pulmonis UAB CTIP0
MPNE272634 ncbi Mycoplasma pneumoniae M1290
MPET420662 ncbi Methylibium petroleiphilum PM11
MPEN272633 ncbi Mycoplasma penetrans HF-20
MMYC272632 ncbi Mycoplasma mycoides mycoides SC str. PG10
MMOB267748 ncbi Mycoplasma mobile 163K1
MMAZ192952 ncbi Methanosarcina mazei Go10
MMAR444158 ncbi Methanococcus maripaludis C60
MMAR426368 ncbi Methanococcus maripaludis C70
MMAR402880 ncbi Methanococcus maripaludis C50
MMAR368407 ncbi Methanoculleus marisnigri JR10
MMAR267377 ncbi Methanococcus maripaludis S20
MMAG342108 ncbi Magnetospirillum magneticum AMB-11
MLEP272631 ncbi Mycobacterium leprae TN0
MLAB410358 ncbi Methanocorpusculum labreanum Z0
MKAN190192 ncbi Methanopyrus kandleri AV190
MJAN243232 ncbi Methanocaldococcus jannaschii DSM 26610
MHYO295358 ncbi Mycoplasma hyopneumoniae 2320
MHYO262722 ncbi Mycoplasma hyopneumoniae 74480
MHYO262719 ncbi Mycoplasma hyopneumoniae J0
MHUN323259 ncbi Methanospirillum hungatei JF-10
MGEN243273 ncbi Mycoplasma genitalium G370
MFLO265311 ncbi Mesoplasma florum L10
MEXT419610 ncbi Methylobacterium extorquens PA10
MCAP340047 ncbi Mycoplasma capricolum capricolum ATCC 273430
MCAP243233 ncbi Methylococcus capsulatus Bath1
MBUR259564 ncbi Methanococcoides burtonii DSM 62420
MBOV410289 ncbi Mycobacterium bovis BCG str. Pasteur 1173P21
MBOV233413 ncbi Mycobacterium bovis AF2122/971
MBAR269797 ncbi Methanosarcina barkeri Fusaro0
MAVI243243 ncbi Mycobacterium avium 1040
MART243272 ncbi Mycoplasma arthritidis 158L3-11
MAQU351348 ncbi Marinobacter aquaeolei VT81
MAER449447 ncbi Microcystis aeruginosa NIES-8431
MAEO419665 ncbi Methanococcus aeolicus Nankai-30
MACE188937 ncbi Methanosarcina acetivorans C2A0
MABS561007 ncbi Mycobacterium abscessus ATCC 199770
LXYL281090 ncbi Leifsonia xyli xyli CTCB071
LSAK314315 ncbi Lactobacillus sakei sakei 23K1
LLAC272623 ncbi Lactococcus lactis lactis Il14030
LLAC272622 ncbi Lactococcus lactis cremoris SK110
LJOH257314 ncbi Lactobacillus johnsonii NCC 5330
LINT363253 ncbi Lawsonia intracellularis PHE/MN1-000
LHEL405566 ncbi Lactobacillus helveticus DPC 45710
LGAS324831 ncbi Lactobacillus gasseri ATCC 333230
LDEL390333 ncbi Lactobacillus delbrueckii bulgaricus ATCC 118420
LDEL321956 ncbi Lactobacillus delbrueckii bulgaricus ATCC BAA-3650
LCAS321967 ncbi Lactobacillus casei ATCC 3340
LBIF456481 ncbi Leptospira biflexa serovar Patoc strain Patoc 1 (Paris)1
LBIF355278 ncbi Leptospira biflexa serovar Patoc strain Patoc 1 (Ames)1
LACI272621 ncbi Lactobacillus acidophilus NCFM0
JSP290400 ncbi Jannaschia sp. CCS11
IHOS453591 ncbi Ignicoccus hospitalis KIN4/I0
HWAL362976 ncbi Haloquadratum walsbyi DSM 167900
HSP64091 ncbi Halobacterium sp. NRC-11
HSAL478009 ncbi Halobacterium salinarum R11
HPYL85963 ncbi Helicobacter pylori J990
HPYL357544 ncbi Helicobacter pylori HPAG10
HPY ncbi Helicobacter pylori 266950
HNEP81032 Hyphomonas neptunium0
HMOD498761 ncbi Heliobacterium modesticaldum Ice10
HHEP235279 ncbi Helicobacter hepaticus ATCC 514490
HHAL349124 ncbi Halorhodospira halophila SL11
HDUC233412 ncbi Haemophilus ducreyi 35000HP0
HBUT415426 ncbi Hyperthermus butylicus DSM 54560
HACI382638 ncbi Helicobacter acinonychis Sheeba0
GTHE420246 ncbi Geobacillus thermodenitrificans NG80-20
GSUL243231 ncbi Geobacter sulfurreducens PCA1
GOXY290633 ncbi Gluconobacter oxydans 621H1
GBET391165 ncbi Granulibacter bethesdensis CGDNIH10
FSUC59374 ncbi Fibrobacter succinogenes succinogenes S851
FSP106370 ncbi Frankia sp. CcI30
FNUC190304 ncbi Fusobacterium nucleatum nucleatum ATCC 255860
FMAG334413 ncbi Finegoldia magna ATCC 293280
FALN326424 ncbi Frankia alni ACN14a0
ERUM302409 ncbi Ehrlichia ruminantium Gardel0
ERUM254945 ncbi Ehrlichia ruminantium Welgevonden0
ELIT314225 ncbi Erythrobacter litoralis HTCC25941
EFAE226185 ncbi Enterococcus faecalis V5830
ECHA205920 ncbi Ehrlichia chaffeensis Arkansas0
ECAN269484 ncbi Ehrlichia canis Jake0
DVUL882 ncbi Desulfovibrio vulgaris Hildenborough0
DSP255470 ncbi Dehalococcoides sp. CBDB10
DSP216389 ncbi Dehalococcoides sp. BAV10
DPSY177439 ncbi Desulfotalea psychrophila LSv540
DOLE96561 ncbi Desulfococcus oleovorans Hxd30
DNOD246195 ncbi Dichelobacter nodosus VCS1703A0
DHAF138119 ncbi Desulfitobacterium hafniense Y511
DETH243164 ncbi Dehalococcoides ethenogenes 1950
DDES207559 ncbi Desulfovibrio desulfuricans desulfuricans G200
DARO159087 ncbi Dechloromonas aromatica RCB1
CVES412965 ncbi Candidatus Vesicomyosocius okutanii HA1
CTRA471473 ncbi Chlamydia trachomatis L2b/UCH-1/proctitis0
CTRA471472 ncbi Chlamydia trachomatis 434/Bu0
CTET212717 ncbi Clostridium tetani E880
CTEP194439 ncbi Chlorobium tepidum TLS1
CSUL444179 ncbi Candidatus Sulcia muelleri GWSS0
CRUT413404 ncbi Candidatus Ruthia magnifica Cm (Calyptogena magnifica)1
CPNE182082 ncbi Chlamydophila pneumoniae TW-1830
CPNE138677 ncbi Chlamydophila pneumoniae J1380
CPNE115713 ncbi Chlamydophila pneumoniae CWL0290
CPNE115711 ncbi Chlamydophila pneumoniae AR390
CPHY357809 ncbi Clostridium phytofermentans ISDg0
CPER289380 ncbi Clostridium perfringens SM1010
CPER195102 ncbi Clostridium perfringens 130
CPEL335992 ncbi Candidatus Pelagibacter ubique HTCC10620
CMUR243161 ncbi Chlamydia muridarum Nigg0
CMIC443906 ncbi Clavibacter michiganensis michiganensis NCPPB 3820
CMIC31964 ncbi Clavibacter michiganensis sepedonicus0
CMET456442 ncbi Candidatus Methanoregula boonei 6A80
CKOR374847 ncbi Candidatus Korarchaeum cryptofilum OPF81
CKLU431943 ncbi Clostridium kluyveri DSM 5550
CJEJ407148 ncbi Campylobacter jejuni jejuni 811160
CJEJ360109 ncbi Campylobacter jejuni doylei 269.970
CJEJ354242 ncbi Campylobacter jejuni jejuni 81-1760
CJEJ195099 ncbi Campylobacter jejuni RM12210
CJEJ192222 ncbi Campylobacter jejuni jejuni NCTC 111680
CJEI306537 ncbi Corynebacterium jeikeium K4110
CJAP155077 Cellvibrio japonicus1
CHUT269798 ncbi Cytophaga hutchinsonii ATCC 334060
CHOM360107 ncbi Campylobacter hominis ATCC BAA-3810
CGLU196627 ncbi Corynebacterium glutamicum ATCC 130320
CFET360106 ncbi Campylobacter fetus fetus 82-400
CFEL264202 ncbi Chlamydophila felis Fe/C-560
CEFF196164 ncbi Corynebacterium efficiens YS-3141
CDIP257309 ncbi Corynebacterium diphtheriae NCTC 131290
CDES477974 ncbi Candidatus Desulforudis audaxviator MP104C1
CCUR360105 ncbi Campylobacter curvus 525.920
CCON360104 ncbi Campylobacter concisus 138260
CCHL340177 ncbi Chlorobium chlorochromatii CaD31
CCAV227941 ncbi Chlamydophila caviae GPIC0
CBLO291272 ncbi Candidatus Blochmannia pennsylvanicus BPEN0
CBLO203907 ncbi Candidatus Blochmannia floridanus0
CAULO ncbi Caulobacter crescentus CB151
CACE272562 ncbi Clostridium acetobutylicum ATCC 8241
CABO218497 ncbi Chlamydophila abortus S26/30
BTUR314724 ncbi Borrelia turicatae 91E1350
BTRI382640 ncbi Bartonella tribocorum CIP 1054760
BSP107806 ncbi Buchnera aphidicola APS (Acyrthosiphon pisum)0
BQUI283165 ncbi Bartonella quintana Toulouse0
BPER257313 ncbi Bordetella pertussis Tohama I0
BPAR257311 ncbi Bordetella parapertussis 128221
BMEL224914 ncbi Brucella melitensis bv. 1 str. 16M1
BLON206672 ncbi Bifidobacterium longum NCC27050
BHER314723 ncbi Borrelia hermsii DAH0
BHEN283166 ncbi Bartonella henselae Houston-10
BGAR290434 ncbi Borrelia garinii PBi0
BFRA295405 ncbi Bacteroides fragilis YCH461
BFRA272559 ncbi Bacteroides fragilis NCTC 93431
BCIC186490 Candidatus Baumannia cicadellinicola0
BBUR224326 ncbi Borrelia burgdorferi B310
BBRO257310 ncbi Bordetella bronchiseptica RB501
BBAC360095 ncbi Bartonella bacilliformis KC5830
BBAC264462 ncbi Bdellovibrio bacteriovorus HD1000
BAPH372461 ncbi Buchnera aphidicola Cc (Cinara cedri)0
BAPH198804 ncbi Buchnera aphidicola Sg (Schizaphis graminum)0
BAFZ390236 ncbi Borrelia afzelii PKo0
AYEL322098 ncbi Aster yellows witches-broom phytoplasma AYWB0
AVAR240292 ncbi Anabaena variabilis ATCC 294130
AURANTIMONAS Aurantimonas manganoxydans SI85-9A10
ASP76114 ncbi Aromatoleum aromaticum EbN11
ASP62977 ncbi Acinetobacter sp. ADP11
ASP62928 ncbi Azoarcus sp. BH721
ASP232721 ncbi Acidovorax sp. JS421
APLE434271 ncbi Actinobacillus pleuropneumoniae serovar 3 str. JL030
APLE416269 ncbi Actinobacillus pleuropneumoniae L200
APHA212042 ncbi Anaplasma phagocytophilum HZ0
APER272557 ncbi Aeropyrum pernix K10
AORE350688 ncbi Alkaliphilus oremlandii OhILAs1
ANAE240017 Actinomyces oris MG10
AMAR329726 ncbi Acaryochloris marina MBIC110171
AMAR234826 ncbi Anaplasma marginale St. Maries0
ALAI441768 ncbi Acholeplasma laidlawii PG-8A0
AFUL224325 ncbi Archaeoglobus fulgidus DSM 43040
AFER243159 ncbi Acidithiobacillus ferrooxidans ATCC 232701
ACEL351607 ncbi Acidothermus cellulolyticus 11B0
ABUT367737 ncbi Arcobacter butzleri RM40180
ABOR393595 ncbi Alcanivorax borkumensis SK21
ABAU360910 ncbi Bordetella avium 197N1
AAEO224324 ncbi Aquifex aeolicus VF51


Names of the homologs of the genes in the group in each of these orgs
  G7893   G7339   G6963   G6961   G6838   EG10993   EG10512   
ZMOB264203 ZMO1270
XFAS405440 XFASM12_0710
XFAS183190 PD_0598
XFAS160492 XF1357
WSUC273121
WPIP955
WPIP80849
UURE95667
UURE95664
UPAR505682
UMET351160
TWHI218496 TW0421
TWHI203267 TW326
TVOL273116 TVN0398
TSP28240
TROS309801 TRD_A0539
TPET390874
TPEN368408
TPAL243276
TMAR243274
TFUS269800
TERY203124 TERY_0352
TELO197221
TDEN326298
TDEN292415 TBD_0669
TDEN243275 TDE_2194
TCRU317025 TCR_1979
TACI273075 TA1189
STRO369723
STHE322159
STHE299768
STHE264199
SSUI391296
SSUI391295
SSP84588
SSP64471
SSP387093
SSP321332
SSP321327
SSP1148
SSP1131
SRUB309807 SRU_0382
SPYO370553 MGAS2096_SPY0909
SPYO370551 MGAS9429_SPY0953
SPYO193567 SPS0972
SPNE488221 SP70585_2143
SPNE487214 SPH_2210
SPNE171101 SPR1866
SPNE170187 SPN20024
SPNE1313 SPJ_2061
SMUT210007
SMAR399550
SELO269084
SALA317655 SALA_2171
SAGA211110 GBS0054
SAGA208435
SAGA205921
RTYP257363
RRIC452659
RRIC392021
RPRO272947
RPAL316058 RPB_3969
RPAL316057 RPD_3724
RPAL316055 RPE_1359
RMET266264 RMET_4805
RMAS416276
RFER338969
RFEL315456
RCON272944
RCAS383372 RCAS_4434
RCAN293613
RBEL391896
RBEL336407
RALB246199
RAKA293614
PTOR263820 PTO0757
PSYR223283 PSPTO_0495
PSTU379731 PST_3865
PSP56811
PSP312153 PNUC_0154
PRUM264731 GFRORF0463
PPEN278197
PMUL272843
PMAR93060
PMAR74547
PMAR74546
PMAR59920
PMAR167555
PMAR167546
PMAR167542
PMAR167540
PMAR167539
PMAR146891
PLUT319225 PLUT_0257
PINT246198 PIN_A0756
PGIN242619 PG_0481
PENT384676 PSEEN5120
PCRY335284
PAST100379
PARC259536
OTSU357244
NWIN323098
NSP387092
NSP103690 ALR2335
NSEN222891
NPHA348780 NP4232A
NOCE323261 NOC_2100
NMUL323848 NMUL_A1130
NMEN374833 NMCC_1310
NMEN272831
NMEN122587
NMEN122586 NMB_1395
NHAM323097 NHAM_1928
NGON242231
NEUT335283 NEUT_2137
NEUR228410 NE2299
MTUB419947 MRA_0035
MTUB336982 TBFG_10031
MTHE349307
MTHE187420
MTBRV RV0032
MTBCDC MT0037
MSYN262723
MSTA339860
MSP409
MPUL272635
MPNE272634
MPET420662 MPE_A0530
MPEN272633
MMYC272632
MMOB267748 MMOB5780
MMAZ192952
MMAR444158
MMAR426368
MMAR402880
MMAR368407
MMAR267377
MMAG342108 AMB1683
MLEP272631
MLAB410358
MKAN190192
MJAN243232
MHYO295358
MHYO262722
MHYO262719
MHUN323259
MGEN243273
MFLO265311
MEXT419610
MCAP340047
MCAP243233 MCA_1126
MBUR259564
MBOV410289 BCG_0063
MBOV233413 MB0033
MBAR269797
MAVI243243
MART243272 MART0624
MAQU351348 MAQU_2755
MAER449447 MAE_40370
MAEO419665
MACE188937
MABS561007
LXYL281090 LXX22610
LSAK314315 LSA0509
LLAC272623
LLAC272622
LJOH257314
LINT363253
LHEL405566
LGAS324831
LDEL390333
LDEL321956
LCAS321967
LBIF456481 LEPBI_I3293
LBIF355278 LBF_3179
LACI272621
JSP290400 JANN_3964
IHOS453591
HWAL362976
HSP64091 VNG2617G
HSAL478009 OE4674F
HPYL85963
HPYL357544
HPY
HNEP81032
HMOD498761
HHEP235279
HHAL349124 HHAL_0962
HDUC233412
HBUT415426
HACI382638
GTHE420246
GSUL243231 GSU_2629
GOXY290633 GOX1636
GBET391165
FSUC59374 FSU0220
FSP106370
FNUC190304
FMAG334413
FALN326424
ERUM302409
ERUM254945
ELIT314225 ELI_04785
EFAE226185
ECHA205920
ECAN269484
DVUL882
DSP255470
DSP216389
DPSY177439
DOLE96561
DNOD246195
DHAF138119 DSY3044
DETH243164
DDES207559
DARO159087 DARO_2897
CVES412965 COSY_0760
CTRA471473
CTRA471472
CTET212717
CTEP194439 CT_1951
CSUL444179
CRUT413404 RMAG_0835
CPNE182082
CPNE138677
CPNE115713
CPNE115711
CPHY357809
CPER289380
CPER195102
CPEL335992
CMUR243161
CMIC443906
CMIC31964
CMET456442
CKOR374847 KCR_0632
CKLU431943
CJEJ407148
CJEJ360109
CJEJ354242
CJEJ195099
CJEJ192222
CJEI306537
CJAP155077 CJA_0427
CHUT269798
CHOM360107
CGLU196627
CFET360106
CFEL264202
CEFF196164 CE0053
CDIP257309
CDES477974 DAUD_1326
CCUR360105
CCON360104
CCHL340177 CAG_0226
CCAV227941
CBLO291272
CBLO203907
CAULO CC1162
CACE272562 CAC3375
CABO218497
BTUR314724
BTRI382640
BSP107806
BQUI283165
BPER257313
BPAR257311 BPP0546
BMEL224914 BMEI1604
BLON206672
BHER314723
BHEN283166
BGAR290434
BFRA295405 BF2988
BFRA272559 BF2864
BCIC186490
BBUR224326
BBRO257310 BB0552
BBAC360095
BBAC264462
BAPH372461
BAPH198804
BAFZ390236
AYEL322098
AVAR240292
AURANTIMONAS
ASP76114 EBA6018
ASP62977 ACIAD3339
ASP62928 AZO1889
ASP232721 AJS_1889
APLE434271
APLE416269
APHA212042
APER272557
AORE350688 CLOS_0909
ANAE240017
AMAR329726 AM1_0726
AMAR234826
ALAI441768
AFUL224325
AFER243159 AFE_2785
ACEL351607
ABUT367737
ABOR393595 ABO_2219
ABAU360910 BAV2449
AAEO224324 AQ_626


Organism features enriched in list (features available for 287 out of the 305 orgs in the list)
Feature    Pvalue       Num occurrences in list  Total num occurrences  
Arrangment:Clusters 0.0001367117
Arrangment:Pairs 0.000998741112
Disease:Pharyngitis 0.003280388
Disease:bronchitis_and_pneumonitis 0.003280388
Endospores:No 0.0035586118211
Endospores:Yes 0.00002281253
GC_Content_Range4:0-40 0.0000915126213
GC_Content_Range4:60-100 0.001709857145
GC_Content_Range7:0-30 0.00004713647
GC_Content_Range7:50-60 0.006299842107
GC_Content_Range7:60-70 0.003019053134
Genome_Size_Range5:0-2 3.166e-26131155
Genome_Size_Range5:4-6 1.667e-1941184
Genome_Size_Range5:6-10 2.921e-7747
Genome_Size_Range9:0-1 2.553e-92727
Genome_Size_Range9:1-2 3.439e-17104128
Genome_Size_Range9:4-5 8.651e-72696
Genome_Size_Range9:5-6 1.056e-111588
Genome_Size_Range9:6-8 8.544e-6638
Gram_Stain:Gram_Pos 0.006112362150
Habitat:Host-associated 0.0018051117206
Habitat:Multiple 0.002255673178
Habitat:Terrestrial 0.0012729731
Motility:Yes 2.944e-899267
Optimal_temp.:37 0.000536767106
Oxygen_Req:Anaerobic 0.000227766102
Oxygen_Req:Facultative 7.486e-869201
Oxygen_Req:Microaerophilic 0.00923811418
Pathogenic_in:Animal 0.00238702266
Shape:Rod 7.571e-13129347
Shape:Sphere 0.00002171819
Shape:Spiral 0.00003612834
Temp._range:Mesophilic 0.0060735222473



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ORGANISMS ENRICHED FOR GROUP:

Total number of orgs: 7
Effective number of orgs (counting one per cluster within 468 clusters): 6

Organism list
Homologs in each organism in the list
Features enriched in organism list


Follow (ncbi) link, when present, to find the set of organism features for each organism
Org ID  Org Name    Pvalue       # genes in tgt genome found in org  # genes in group found in org  
PFUR186497 ncbi Pyrococcus furiosus DSM 3638 0.00003604617
HMAR272569 ncbi Haloarcula marismortui ATCC 43049 0.00039146477
PHOR70601 ncbi Pyrococcus horikoshii OT3 0.00082413886
PMOB403833 ncbi Petrotoga mobilis SJ95 0.00175578017
PABY272844 ncbi Pyrococcus abyssi GE5 0.00215904566
CBUR360115 ncbi Coxiella burnetii RSA 331 0.00816859977
CBUR227377 ncbi Coxiella burnetii RSA 493 0.009008710117


Names of the homologs of the genes in the group in each of these orgs
  G7893   G7339   G6963   G6961   G6838   EG10993   EG10512   
PFUR186497 PF0991PF0991PF0991PF0991PF0991PF0991PF0265
HMAR272569 PNG7032PNG7351PNG7032PNG7032PNG7032PNG7032RRNAC0885
PHOR70601 PH0655PH0655PH0655PH0655PH0655PH0292
PMOB403833 PMOB_1548PMOB_1548PMOB_1548PMOB_1548PMOB_1548PMOB_1548PMOB_1549
PABY272844 PAB2382PAB2382PAB2382PAB2382PAB2382PAB1244
CBUR360115 COXBURSA331_A0201COXBURSA331_A0201COXBURSA331_A0201COXBURSA331_A0201COXBURSA331_A0201COXBURSA331_A0201COXBURSA331_A0200
CBUR227377 CBU_0112CBU_0112CBU_0112CBU_0112CBU_0112CBU_0112CBU_0111


Organism features enriched in list (features available for 7 out of the 7 orgs in the list)
Feature    Pvalue       Num occurrences in list  Total num occurrences  
Disease:Q_fever 0.000123822
GC_Content_Range7:40-50 0.00414395117
Shape:Coccobacillus 0.0062951211
Temp._range:Hyperthermophilic 0.0016389323



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ORGANISMS DEPLETED FOR GROUP:




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PHYLOGENETIC PROFILE SIMILARITY WITH KNOWN PATHWAYS:

Pathways or complexes with absolute value of Pearson coefficient with respect to candidate larger than 0.4 are listed below
The candidate is assumed to exist in orgs listed in section List of organisms containing most genes from the group


Pathway or complex  # Orgs containing it  # of those orgs also containing candidate  Pearson Coeff  
THREONINE-DEG2-PWY (threonine degradation II)2141320.5922
GALACTITOLCAT-PWY (galactitol degradation)73630.5031
XYLCAT-PWY (xylose degradation I)2171150.4535
GLUTAMINDEG-PWY (glutamine degradation I)1911060.4504
GALACTCAT-PWY (D-galactonate degradation)104720.4437
AST-PWY (arginine degradation II (AST pathway))120780.4369
PWY-6196 (serine racemization)102700.4324
KETOGLUCONMET-PWY (ketogluconate metabolism)103680.4085
GLUCARDEG-PWY (D-glucarate degradation I)152870.4074
RIBOKIN-PWY (ribose degradation)2791270.4048
GLUCONSUPER-PWY (D-gluconate degradation)2291120.4017
ENTNER-DOUDOROFF-PWY (Entner-Doudoroff pathway I)2491180.4016
GLYCOLYSIS-E-D (superpathway of glycolysis and Entner-Doudoroff)2491180.4016



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PAIRWISE GENOME CONTEXT SCORE MATRIX:

  G7339   G6963   G6961   G6838   EG10993   EG10512   
G78930.9991850.9995360.9996860.9995710.9995390.998789
G73390.9996630.999220.9994490.9996290.999358
G69630.9995630.9995130.999880.999727
G69610.9994580.9995480.998834
G68380.9995880.99888
EG109930.999776
EG10512



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PAIRWISE BLAST SCORES:

  G7893   G7339   G6963   G6961   G6838   EG10993   EG10512   
G78930.0f0--4.1e-292.2e-306.4e-24-
G7339-0.0f0---3.1e-24-
G6963--0.0f07.2e-32-3.9e-40-
G6961---0.0f0-7.6e-37-
G6838---4.9e-330.0f05.5e-34-
EG10993--2.3e-351.9e-31-0.0f0-
EG10512------0.0f0



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PATHWAYS OR PROTEIN COMPLEX MATCHES IN TARGET ORG:

For each case, all genes involved in the pathway or complex are listed. For each gene we list: a tag indicating whether the gene is part of the candidate list or not, the average and the minimum scores of the gene to the candidate list, the gene name, and its product names.

- THREOCAT-PWY (superpathway of threonine metabolism) (degree of match pw to cand: 0.083, degree of match cand to pw: 0.286, average score: 0.637)
  Genes in pathway or complex:
             0.6745 0.3415 M014 (mhpF) MHPF-MONOMER (acetaldehyde dehydrogenase 2)
             0.3462 0.0722 EG10031 (adhE) ADHE-MONOMER (AdhE)
             0.4661 0.2126 G6455 (ltaE) LTAA-MONOMER (LtaA)
             0.5136 0.1364 EG13139 (tynA) AMINEOXID-MONOMER (TynA)
   *in cand* 0.9993 0.9988 EG10512 (kbl) AKBLIG-MONOMER (Kbl)
             0.1217 0.0572 EG10027 (ackA) ACETATEKINA-MONOMER (propionate kinase / acetate kinase)
             0.1333 0.0669 EG11172 (tdcD) PROPKIN-MONOMER (propionate kinase)
             0.1943 0.0779 EG20173 (pta) PHOSACETYLTRANS-MONOMER (Pta)
             0.5201 0.1210 EG10701 (pflB) PYRUVFORMLY-MONOMER (PflB)
             0.4875 0.1108 G7627 (tdcE) KETOBUTFORMLY-MONOMER (2-ketobutyrate formate-lyase / pyruvate formate-lyase 4)
             0.7440 0.4746 EG10990 (tdcB) THREDEHYDCAT-MONOMER (TdcB)
             0.7724 0.2259 EG10493 (ilvA) THREDEHYDSYN-MONOMER (IlvA)
             0.8770 0.4971 EG10501 (ilvM) SMALLILVM-MONOMER (IlvM)
                NIL    NIL EG10498 (ilvG_2) LARGEILVG-MONOMER (acetolactate synthase II, large subunit, C-ter fragment (pseudogene))
                NIL    NIL G8221 (ilvG_1) G8221-MONOMER (acetolactate synthase II, large subunit, N-ter fragment (pseudogene))
             0.5031 0.0784 EG10502 (ilvN) SMALLILVN-MONOMER (IlvN)
             0.7717 0.3318 EG10494 (ilvB) LARGEILVB-MONOMER (IlvB)
             0.4706 0.2302 EG10499 (ilvH) ACETOLACTSYNIII-HCHAIN-MONOMER (IlvH)
             0.3997 0.1873 EG10500 (ilvI) ACETOLACTSYNIII-ICHAIN-MONOMER (IlvI)
             0.7641 0.3947 EG10495 (ilvC) KETOLREDUCTOISOM-MONOMER (IlvC)
             0.8360 0.6114 EG10497 (ilvE) BRANCHED-CHAINAMINOTRANSFER-MONOMER (IlvE)
             0.8954 0.7365 EG10496 (ilvD) DIHYDROXYACIDDEHYDRAT-MONOMER (IlvD)
             0.8750 0.7372 EG11904 (gldA) GLYCDEH-MONOMER (GldA)
   *in cand* 0.9997 0.9995 EG10993 (tdh) THREODEHYD-MONOMER (Tdh)
  Genes in candidate but not in this pathway or complex:
   *in cand* 0.9995 0.9989 G6838 (rspB) G6838-MONOMER (predicted oxidoreductase, Zn-dependent and NAD(P)-binding)
   *in cand* 0.9995 0.9988 G6961 (ydjJ) G6961-MONOMER (predicted oxidoreductase, Zn-dependent and NAD(P)-binding)
   *in cand* 0.9997 0.9995 G6963 (ydjL) G6963-MONOMER (predicted oxidoreductase, Zn-dependent and NAD(P)-binding)
   *in cand* 0.9995 0.9992 G7339 (yphC) YPHC-MONOMER (predicted oxidoreductase, Zn-dependent and NAD(P)-binding)
   *in cand* 0.9995 0.9988 G7893 (idnD) IDONDEHYD-MONOMER (L-idonate 5-dehydrogenase)

- THREONINE-DEG2-PWY (threonine degradation II) (degree of match pw to cand: 1.000, degree of match cand to pw: 0.286, average score: 1.000)
  Genes in pathway or complex:
   *in cand* 0.9997 0.9995 EG10993 (tdh) THREODEHYD-MONOMER (Tdh)
   *in cand* 0.9993 0.9988 EG10512 (kbl) AKBLIG-MONOMER (Kbl)
  Genes in candidate but not in this pathway or complex:
   *in cand* 0.9995 0.9989 G6838 (rspB) G6838-MONOMER (predicted oxidoreductase, Zn-dependent and NAD(P)-binding)
   *in cand* 0.9995 0.9988 G6961 (ydjJ) G6961-MONOMER (predicted oxidoreductase, Zn-dependent and NAD(P)-binding)
   *in cand* 0.9997 0.9995 G6963 (ydjL) G6963-MONOMER (predicted oxidoreductase, Zn-dependent and NAD(P)-binding)
   *in cand* 0.9995 0.9992 G7339 (yphC) YPHC-MONOMER (predicted oxidoreductase, Zn-dependent and NAD(P)-binding)
   *in cand* 0.9995 0.9988 G7893 (idnD) IDONDEHYD-MONOMER (L-idonate 5-dehydrogenase)



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GENOME CONTEXT INFORMATION:

Each row corresponds to a replicon in an organism, each column to a gene in the candidate. The second column indicates whether the organims was included in the list used to compute the genome context scores or not. Some organisms are not included because they are phylogenetically too similar to others already in the list.
The number in the matrix indicate the position of the homolog of the gene in the replicon. All numbers are relative to the smaller one, which is assigned a position of zero. Two columns with the same number indicate that the two genes matched the same gene in that organism.

Genome browser links for gene clusters

The links below opens a genome browser BioCyc page for each cluster of genes in the target genome. These pages shows the central gene of the cluster in the target genome and its best homolog in the reference genomes, for the genomes that contain homologs for at least 75% of the genes in the group. Only one genome per phylogenetic cluster of organisms is shown, to keep the list smaller.

EG10512 EG10993 (centered at EG10512)
G6838 (centered at G6838)
G6961 (centered at G6961)
G6963 (centered at G6963)
G7339 (centered at G7339)
G7893 (centered at G7893)


ORG:REPLICON:CIRC?\GENE  IN REF LIST  G7893   G7339   G6963   G6961   G6838   EG10993   EG10512   
207/623249/623258/623210/623222/623251/623311/623
AAEO224324:0:Tyes------0
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