CANDIDATE ID: 306

CANDIDATE ID: 306

NUMBER OF GENES: 7
AVERAGE SCORE:    9.9935495e-1 (range=[0.0,1.0])
AVERAGE MINIMUM BLAST P-VAL:    1.0000000e+0

Gene List
List of organisms containing most genes from the group
    Phylogenetic tree highlighting these organisms (opens new page)
List of organisms containing very few or no genes from the group
List of organisms enriched for group
List of organisms depleted for group
Phylogenetic profile similarity with known pathways
Pairwise genome context scores
Pairwise Blast scores
Pathway or protein complex matches in target organism
Genome context matrix
    Genes and their orthologs in genome browser BioCyc pages



GENE LIST:

- G7424 (ftsB) (b2748)
   Products of gene:
     - G7424-MONOMER (essential cell division protein FtsB)

- G7422 (truD) (b2745)
   Products of gene:
     - G7422-MONOMER (tRNA pseudouridine 13 synthase)
       Reactions:
        tRNA uridine  ->  tRNA pseudouridine

- EG12111 (nlpD) (b2742)
   Products of gene:
     - EG12111-MONOMER (NlpD putative outer membrane lipoprotein)

- EG11817 (surE) (b2744)
   Products of gene:
     - EG11817-MONOMER (broad specificity 5'(3')-nucleotidase and polyphosphatase)
       Reactions:
        a nucleoside 3'-phosphate + H2O  =  a ribonucleoside + phosphate
        a ribonucleoside monophosphate + H2O  =  a ribonucleoside + phosphate
         In pathways
         P165-PWY (P165-PWY)
         PWY-5043 (PWY-5043)
         PWY-6353 (PWY-6353)
         PWY-5044 (PWY-5044)

- EG10689 (pcm) (b2743)
   Products of gene:
     - EG10689-MONOMER (L-isoaspartate protein carboxylmethyltransferase type II)
       Reactions:
        S-adenosyl-L-methionine + a protein L-beta-isoaspartate  ->  S-adenosyl-L-homocysteine + a protein L-beta-isoaspartate alpha-methyl ester

- EG10625 (mutS) (b2733)
   Products of gene:
     - EG10625-MONOMER (MutS)
     - MUTHLS-CPLX (MutHLS complex, methyl-directed mismatch repair)
       Reactions:
        a mismatched DNA base pair  =  a properly matched DNA base pair

- EG10510 (rpoS) (b2741)
   Products of gene:
     - RPOS-MONOMER (RNA polymerase, sigma S (sigma 38) factor)
     - RNAPS-CPLX (RNA polymerase sigma 38)



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ORGANISMS CONTAINING AT LEAST 6 GENES FROM THE GROUP:

Total number of orgs: 137
Effective number of orgs (counting one per cluster within 468 clusters): 82

Organism list
Homologs in each organism in the list
Features enriched in organism list


Follow (ncbi) link, when present, to find the set of organism features for each organism
Org ID  Org Name  # genes in group found in org  
YPSE349747 ncbi Yersinia pseudotuberculosis IP 317587
YPSE273123 ncbi Yersinia pseudotuberculosis IP 329537
YPES386656 ncbi Yersinia pestis Pestoides F7
YPES377628 ncbi Yersinia pestis Nepal5167
YPES360102 ncbi Yersinia pestis Antiqua7
YPES349746 ncbi Yersinia pestis Angola7
YPES214092 ncbi Yersinia pestis CO927
YPES187410 ncbi Yersinia pestis KIM 107
YENT393305 ncbi Yersinia enterocolitica enterocolitica 80817
XORY360094 ncbi Xanthomonas oryzae pv. oryzae PXO99A6
XORY342109 ncbi Xanthomonas oryzae pv. oryzae MAFF 3110186
XORY291331 ncbi Xanthomonas oryzae pv. oryzae KACC103316
XFAS405440 ncbi Xylella fastidiosa M126
XCAM487884 Xanthomonas campestris pv. paulliniae6
XCAM316273 ncbi Xanthomonas campestris pv. vesicatoria str. 85-106
XCAM314565 ncbi Xanthomonas campestris pv. campestris str. 80046
XCAM190485 ncbi Xanthomonas campestris pv. campestris str. ATCC 339136
XAXO190486 ncbi Xanthomonas axonopodis pv. citri str. 3066
VVUL216895 ncbi Vibrio vulnificus CMCP67
VVUL196600 ncbi Vibrio vulnificus YJ0167
VPAR223926 ncbi Vibrio parahaemolyticus RIMD 22106337
VFIS312309 ncbi Vibrio fischeri ES1147
VCHO345073 ncbi Vibrio cholerae O3957
VCHO ncbi Vibrio cholerae O1 biovar El Tor str. N169617
TTUR377629 ncbi Teredinibacter turnerae T79016
TDEN292415 ncbi Thiobacillus denitrificans ATCC 252596
STYP99287 ncbi Salmonella enterica enterica serovar Typhimurium str. LT27
SSP94122 ncbi Shewanella sp. ANA-37
SSON300269 ncbi Shigella sonnei Ss0467
SSED425104 ncbi Shewanella sediminis HAW-EB37
SPRO399741 ncbi Serratia proteamaculans 5687
SPEA398579 ncbi Shewanella pealeana ATCC 7003457
SONE211586 ncbi Shewanella oneidensis MR-17
SLOI323850 ncbi Shewanella loihica PV-47
SHIGELLA ncbi Shigella flexneri 2a str. 2457T7
SHAL458817 ncbi Shewanella halifaxensis HAW-EB47
SGLO343509 ncbi Sodalis glossinidius morsitans6
SFLE373384 ncbi Shigella flexneri 5 str. 84017
SFLE198214 ncbi Shigella flexneri 2a str. 3017
SENT454169 ncbi Salmonella enterica enterica serovar Heidelberg str. SL4767
SENT321314 ncbi Salmonella enterica enterica serovar Choleraesuis str. SC-B677
SENT295319 ncbi Salmonella enterica enterica serovar Paratyphi A str. ATCC 91507
SENT220341 ncbi Salmonella enterica enterica serovar Typhi str. CT187
SENT209261 ncbi Salmonella enterica enterica serovar Typhi str. Ty27
SDYS300267 ncbi Shigella dysenteriae Sd1977
SDEN318161 ncbi Shewanella denitrificans OS2177
SDEG203122 ncbi Saccharophagus degradans 2-406
SBOY300268 ncbi Shigella boydii Sb2277
SBAL402882 ncbi Shewanella baltica OS1857
SBAL399599 ncbi Shewanella baltica OS1957
RSOL267608 ncbi Ralstonia solanacearum GMI10006
RMET266264 ncbi Ralstonia metallidurans CH346
REUT381666 ncbi Ralstonia eutropha H166
REUT264198 ncbi Ralstonia eutropha JMP1346
PSYR223283 ncbi Pseudomonas syringae pv. tomato str. DC30007
PSYR205918 ncbi Pseudomonas syringae pv. syringae B728a7
PSTU379731 ncbi Pseudomonas stutzeri A15017
PPUT76869 ncbi Pseudomonas putida GB-17
PPUT351746 ncbi Pseudomonas putida F17
PPUT160488 ncbi Pseudomonas putida KT24407
PPRO298386 ncbi Photobacterium profundum SS97
PMEN399739 ncbi Pseudomonas mendocina ymp6
PLUM243265 ncbi Photorhabdus luminescens laumondii TTO17
PING357804 ncbi Psychromonas ingrahamii 376
PHAL326442 ncbi Pseudoalteromonas haloplanktis TAC1257
PFLU220664 ncbi Pseudomonas fluorescens Pf-57
PFLU216595 ncbi Pseudomonas fluorescens SBW257
PFLU205922 ncbi Pseudomonas fluorescens Pf0-17
PENT384676 ncbi Pseudomonas entomophila L487
PCRY335284 ncbi Psychrobacter cryohalolentis K56
PCAR338963 ncbi Pelobacter carbinolicus DSM 23806
PATL342610 ncbi Pseudoalteromonas atlantica T6c7
PAER208964 ncbi Pseudomonas aeruginosa PAO17
PAER208963 ncbi Pseudomonas aeruginosa UCBPP-PA147
NOCE323261 ncbi Nitrosococcus oceani ATCC 197077
NMUL323848 ncbi Nitrosospira multiformis ATCC 251966
MSP400668 ncbi Marinomonas sp. MWYL17
MPET420662 ncbi Methylibium petroleiphilum PM16
MAQU351348 ncbi Marinobacter aquaeolei VT87
LPNE400673 ncbi Legionella pneumophila Corby7
LPNE297246 ncbi Legionella pneumophila Paris7
LPNE297245 ncbi Legionella pneumophila Lens7
LPNE272624 ncbi Legionella pneumophila pneumophila Philadelphia 17
KPNE272620 ncbi Klebsiella pneumoniae pneumoniae MGH 785787
JSP375286 ncbi Janthinobacterium sp. Marseille6
ILOI283942 ncbi Idiomarina loihiensis L2TR7
HHAL349124 ncbi Halorhodospira halophila SL17
HCHE349521 ncbi Hahella chejuensis KCTC 23967
HARS204773 ncbi Herminiimonas arsenicoxydans6
ESP42895 Enterobacter sp.7
EFER585054 ncbi Escherichia fergusonii ATCC 354697
ECOO157 ncbi Escherichia coli O157:H7 EDL9337
ECOL83334 Escherichia coli O157:H77
ECOL585397 ncbi Escherichia coli ED1a7
ECOL585057 ncbi Escherichia coli IAI397
ECOL585056 ncbi Escherichia coli UMN0267
ECOL585055 ncbi Escherichia coli 559897
ECOL585035 ncbi Escherichia coli S887
ECOL585034 ncbi Escherichia coli IAI17
ECOL481805 ncbi Escherichia coli ATCC 87397
ECOL469008 ncbi Escherichia coli BL21(DE3)7
ECOL439855 ncbi Escherichia coli SMS-3-57
ECOL413997 ncbi Escherichia coli B str. REL6067
ECOL409438 ncbi Escherichia coli SE117
ECOL405955 ncbi Escherichia coli APEC O17
ECOL364106 ncbi Escherichia coli UTI897
ECOL362663 ncbi Escherichia coli 5367
ECOL331111 ncbi Escherichia coli E24377A7
ECOL316407 ncbi Escherichia coli K-12 substr. W31107
ECOL199310 ncbi Escherichia coli CFT0737
ECAR218491 ncbi Pectobacterium atrosepticum SCRI10436
DARO159087 ncbi Dechloromonas aromatica RCB6
CVIO243365 ncbi Chromobacterium violaceum ATCC 124726
CSAL290398 ncbi Chromohalobacter salexigens DSM 30437
CPSY167879 ncbi Colwellia psychrerythraea 34H7
CJAP155077 Cellvibrio japonicus6
BVIE269482 ncbi Burkholderia vietnamiensis G46
BTHA271848 ncbi Burkholderia thailandensis E2646
BSP36773 Burkholderia sp.6
BPSE320373 ncbi Burkholderia pseudomallei 6686
BPSE320372 ncbi Burkholderia pseudomallei 1710b6
BPSE272560 ncbi Burkholderia pseudomallei K962436
BMAL320389 ncbi Burkholderia mallei NCTC 102476
BMAL320388 ncbi Burkholderia mallei SAVP16
BMAL243160 ncbi Burkholderia mallei ATCC 233446
BCEN331272 ncbi Burkholderia cenocepacia HI24246
BCEN331271 ncbi Burkholderia cenocepacia AU 10546
BAMB398577 ncbi Burkholderia ambifaria MC40-66
BAMB339670 ncbi Burkholderia ambifaria AMMD6
ASP76114 ncbi Aromatoleum aromaticum EbN16
ASP62928 ncbi Azoarcus sp. BH726
ASAL382245 ncbi Aeromonas salmonicida salmonicida A4497
APLE434271 ncbi Actinobacillus pleuropneumoniae serovar 3 str. JL036
APLE416269 ncbi Actinobacillus pleuropneumoniae L206
AHYD196024 Aeromonas hydrophila dhakensis7
AFER243159 ncbi Acidithiobacillus ferrooxidans ATCC 232706
AEHR187272 ncbi Alkalilimnicola ehrlichii MLHE-17


Names of the homologs of the genes in the group in each of these orgs
  G7424   G7422   EG12111   EG11817   EG10689   EG10625   EG10510   
YPSE349747 YPSIP31758_3300YPSIP31758_3297YPSIP31758_3294YPSIP31758_3296YPSIP31758_3295YPSIP31758_3292YPSIP31758_3293
YPSE273123 YPTB0769YPTB0772YPTB0775YPTB0773YPTB0774YPTB0778YPTB0776
YPES386656 YPDSF_2998YPDSF_3001YPDSF_3004YPDSF_3002YPDSF_3003YPDSF_3006YPDSF_3005
YPES377628 YPN_0731YPN_0734YPN_0737YPN_0735YPN_0736YPN_0739YPN_0738
YPES360102 YPA_2781YPA_2784YPA_2787YPA_2785YPA_2786YPA_2789YPA_2788
YPES349746 YPANGOLA_A0965YPANGOLA_A0962YPANGOLA_A0959YPANGOLA_A0961YPANGOLA_A0960YPANGOLA_A0956YPANGOLA_A0958
YPES214092 YPO3362YPO3359YPO3356YPO3358YPO3357YPO3354YPO3355
YPES187410 Y0827Y0830Y0833Y0831Y0832Y0835Y0834
YENT393305 YE0768YE0771YE0774YE0772YE0773YE0776YE0775
XORY360094 XOOORF_1706XOOORF_1709XOOORF_1714XOOORF_1711XOOORF_1712XOOORF_3331
XORY342109 XOO2813XOO2810XOO2805XOO2808XOO2807XOO1527
XORY291331 XOO2962XOO2959XOO2953XOO2956XOO2955XOO1642
XFAS405440 XFASM12_0617XFASM12_1995XFASM12_1992XFASM12_1993XFASM12_1238XFASM12_0703
XCAM487884 XCC-B100_2558XCC-B100_2555XCC-B100_2550XCC-B100_2553XCC-B100_2552XCC-B100_3132
XCAM316273 XCAORF_1937XCAORF_1940XCAORF_1945XCAORF_1942XCAORF_1943XCAORF_1446
XCAM314565 XC_2530XC_2527XC_2522XC_2525XC_2524XC_3035
XCAM190485 XCC1701XCC1704XCC1709XCC1706XCC1707XCC1207
XAXO190486 XAC1720XAC1723XAC1728XAC1725XAC1726XAC1303
VVUL216895 VV1_1581VV1_1584VV1_1587VV1_1585VV1_1586VV1_1589VV1_1588
VVUL196600 VV2817VV2813VV2810VV2812VV2811VV2806VV2808
VPAR223926 VP2560VP2557VP2554VP2556VP2555VP2552VP2553
VFIS312309 VF2074VF2071VF2068VF2070VF2069VF0534VF2067
VCHO345073 VC0395_A0055VC0395_A0058VC0395_A0061VC0395_A0059VC0395_A0060VC0395_A0063VC0395_A0062
VCHO VC0527VC0530VC0533VC0531VC0532VC0535VC0534
TTUR377629 TERTU_2836TERTU_2834TERTU_2831TERTU_2833TERTU_2828TERTU_2830
TDEN292415 TBD_0622TBD_0837TBD_0835TBD_0836TBD_1159TBD_0838
STYP99287 STM2931STM2928STM2925STM2927STM2926STM2909STM2924
SSP94122 SHEWANA3_1117SHEWANA3_1120SHEWANA3_1123SHEWANA3_1121SHEWANA3_1122SHEWANA3_1125SHEWANA3_1124
SSON300269 SSO_2896SSO_2893SSO_2890SSO_2892SSO_2891SSO_2880SSO_2889
SSED425104 SSED_1291SSED_1294SSED_1297SSED_1295SSED_1296SSED_1299SSED_1298
SPRO399741 SPRO_0825SPRO_0828SPRO_0831SPRO_0829SPRO_0830SPRO_0833SPRO_0832
SPEA398579 SPEA_1186SPEA_1189SPEA_1192SPEA_1190SPEA_1191SPEA_1194SPEA_1193
SONE211586 SO_3439SO_3436SO_3433SO_3435SO_3434SO_3431SO_3432
SLOI323850 SHEW_1206SHEW_1209SHEW_1212SHEW_1210SHEW_1211SHEW_1214SHEW_1213
SHIGELLA S2964YGBONLPDSUREPCMMUTSRPOD
SHAL458817 SHAL_1223SHAL_1226SHAL_1229SHAL_1227SHAL_1228SHAL_1231SHAL_1230
SGLO343509 SG0525SG0530SG0528SG0529SG0531SG0251
SFLE373384 SFV_2750SFV_2753SFV_2756SFV_2754SFV_2755SFV_2770SFV_2757
SFLE198214 AAN44260.1AAN44257.1AAN44254.1AAN44256.1AAN44255.1AAN44243.1AAN44253.1
SENT454169 SEHA_C3121SEHA_C3118SEHA_C3114SEHA_C3117SEHA_C3116SEHA_C3098SEHA_C3113
SENT321314 SCH_2863SCH_2860SCH_2857SCH_2859SCH_2858SCH_2841SCH_2856
SENT295319 SPA2787SPA2784SPA2781SPA2783SPA2782SPA2766SPA2780
SENT220341 STY3056STY3053STY3050STY3052STY3051STY3033STY3049
SENT209261 T2832T2829T2826T2828T2827T2810T2825
SDYS300267 SDY_2947SDY_2944SDY_2941SDY_2943SDY_2942SDY_2933SDY_2940
SDEN318161 SDEN_1197SDEN_1200SDEN_1203SDEN_1201SDEN_1202SDEN_1207SDEN_1204
SDEG203122 SDE_1246SDE_1249SDE_1252SDE_1250SDE_1256SDE_1253
SBOY300268 SBO_2772SBO_2775SBO_2778SBO_2776SBO_2777SBO_2787SBO_2779
SBAL402882 SHEW185_3135SHEW185_3132SHEW185_3129SHEW185_3131SHEW185_3130SHEW185_3127SHEW185_3128
SBAL399599 SBAL195_3278SBAL195_3275SBAL195_3272SBAL195_3274SBAL195_3273SBAL195_3270SBAL195_3271
RSOL267608 RSC1130RSC1206RSC1204RSC1205RSC1151RSC1207
RMET266264 RMET_1056RMET_2116RMET_2118RMET_2117RMET_1075RMET_2115
REUT381666 H16_A1189H16_A2374H16_A2376H16_A1622H16_A1210H16_A2373
REUT264198 REUT_A1092REUT_A2096REUT_A2098REUT_A2097REUT_A1111REUT_A2095
PSYR223283 PSPTO_1555PSPTO_1561PSPTO_1564PSPTO_1562PSPTO_1563PSPTO_4058PSPTO_1565
PSYR205918 PSYR_1364PSYR_1370PSYR_1373PSYR_1371PSYR_1372PSYR_1376PSYR_1374
PSTU379731 PST_1558PST_1567PST_1571PST_1568PST_1569PST_1505PST_1572
PPUT76869 PPUTGB1_1167PPUTGB1_1173PPUTGB1_1176PPUTGB1_1174PPUTGB1_1175PPUTGB1_1179PPUTGB1_1177
PPUT351746 PPUT_4164PPUT_4158PPUT_4155PPUT_4157PPUT_4156PPUT_4152PPUT_4154
PPUT160488 PP_1613PP_1619PP_1622PP_1620PP_1621PP_1626PP_1623
PPRO298386 PBPRA3078PBPRA3075PBPRA3072PBPRA3074PBPRA3073PBPRA3070PBPRA3071
PMEN399739 PMEN_3032PMEN_3025PMEN_3021PMEN_3024PMEN_3023PMEN_3020
PLUM243265 PLU0712PLU0715PLU0718PLU0716PLU0717PLU0722PLU0719
PING357804 PING_0671PING_0674PING_0676PING_0675PING_3383PING_0677
PHAL326442 PSHAA0683PSHAA0686PSHAA0690PSHAA0687PSHAA0688PSHAA0692PSHAA0691
PFLU220664 PFL_1197PFL_1203PFL_1206PFL_1204PFL_1205PFL_1209PFL_1207
PFLU216595 PFLU1292PFLU1298PFLU1301PFLU1299PFLU1300PFLU1164PFLU1302
PFLU205922 PFL_1122PFL_1128PFL_1131PFL_1129PFL_1130PFL_1134PFL_1132
PENT384676 PSEEN4199PSEEN4193PSEEN4190PSEEN4192PSEEN4191PSEEN4187PSEEN4189
PCRY335284 PCRYO_1869PCRYO_1971PCRYO_0661PCRYO_0660PCRYO_0273PCRYO_1124
PCAR338963 PCAR_0760PCAR_1429PCAR_1426PCAR_1427PCAR_1510PCAR_1430
PATL342610 PATL_3856PATL_3859PATL_3863PATL_3860PATL_3861PATL_3263PATL_3864
PAER208964 PA3634PA3626PA3623PA3625PA3624PA3620PA3622
PAER208963 PA14_17330PA14_17440PA14_17470PA14_17450PA14_17460PA14_17500PA14_17480
NOCE323261 NOC_0853NOC_0856NOC_0792NOC_0789NOC_0790NOC_0919NOC_0183
NMUL323848 NMUL_A1229NMUL_A0497NMUL_A0495NMUL_A0496NMUL_A0670NMUL_A0498
MSP400668 MMWYL1_1300MMWYL1_1303MMWYL1_1307MMWYL1_1304MMWYL1_1305MMWYL1_3734MMWYL1_1308
MPET420662 MPE_A2848MPE_A1254MPE_A1252MPE_A1253MPE_A2842MPE_A1255
MAQU351348 MAQU_0922MAQU_0925MAQU_0929MAQU_0926MAQU_0927MAQU_2087MAQU_0930
LPNE400673 LPC_1524LPC_1050LPC_0708LPC_0707LPC_2594LPC_1249LPC_0709
LPNE297246 LPP2021LPP1593LPP1246LPP1245LPP0755LPP1768LPP1247
LPNE297245 LPL2016LPL1400LPL1246LPL1245LPL0737LPL1769LPL1247
LPNE272624 LPG2038LPG1623LPG1283LPG1282LPG0700LPG1805LPG1284
KPNE272620 GKPORF_B2441GKPORF_B2438GKPORF_B2435GKPORF_B2437GKPORF_B2436GKPORF_B2425GKPORF_B2434
JSP375286 MMA_1271MMA_2135MMA_2137MMA_2136MMA_1289MMA_2134
ILOI283942 IL0753IL0750IL0746IL0749IL0748IL0744IL0745
HHAL349124 HHAL_1436HHAL_1433HHAL_1428HHAL_1431HHAL_1430HHAL_1657HHAL_1427
HCHE349521 HCH_01868HCH_01871HCH_01876HCH_01872HCH_01874HCH_05234HCH_01877
HARS204773 HEAR2187HEAR1256HEAR1254HEAR1255HEAR2167HEAR1257
ESP42895 ENT638_3219ENT638_3216ENT638_3213ENT638_3215ENT638_3214ENT638_3211ENT638_3212
EFER585054 EFER_0320EFER_0323EFER_0327EFER_0324EFER_0325EFER_0334EFER_0328
ECOO157 Z4056YGBONLPDSUREPCMMUTSRPOS
ECOL83334 ECS3602ECS3599ECS3596ECS3598ECS3597ECS3589ECS3595
ECOL585397 ECED1_3204ECED1_3201ECED1_3197ECED1_3200ECED1_3199ECED1_3186ECED1_3196
ECOL585057 ECIAI39_2937ECIAI39_2934ECIAI39_2930ECIAI39_2933ECIAI39_2932ECIAI39_2923ECIAI39_2929
ECOL585056 ECUMN_3072ECUMN_3069ECUMN_3065ECUMN_3068ECUMN_3067ECUMN_3057ECUMN_3064
ECOL585055 EC55989_3020EC55989_3017EC55989_3013EC55989_3016EC55989_3015EC55989_3000EC55989_3012
ECOL585035 ECS88_3018ECS88_3015ECS88_3011ECS88_3014ECS88_3013ECS88_3000ECS88_3010
ECOL585034 ECIAI1_2849ECIAI1_2846ECIAI1_2842ECIAI1_2845ECIAI1_2844ECIAI1_2828ECIAI1_3215
ECOL481805 ECOLC_0964ECOLC_0967ECOLC_0970ECOLC_0968ECOLC_0969ECOLC_0979ECOLC_0971
ECOL469008 ECBD_0976ECBD_0979ECBD_0982ECBD_0980ECBD_0981ECBD_0991ECBD_0983
ECOL439855 ECSMS35_2873ECSMS35_2870ECSMS35_2867ECSMS35_2869ECSMS35_2868ECSMS35_2860ECSMS35_2866
ECOL413997 ECB_02598ECB_02595ECB_02592ECB_02594ECB_02593ECB_02583ECB_02591
ECOL409438 ECSE_3000ECSE_2997ECSE_2994ECSE_2996ECSE_2995ECSE_2981ECSE_2993
ECOL405955 APECO1_3775APECO1_3778APECO1_3781APECO1_3779APECO1_3780APECO1_3791APECO1_3782
ECOL364106 UTI89_C3119UTI89_C3116UTI89_C3112UTI89_C3115UTI89_C3114UTI89_C3098UTI89_C3111
ECOL362663 ECP_2730ECP_2727ECP_2723ECP_2726ECP_2725ECP_2711ECP_2722
ECOL331111 ECE24377A_3049ECE24377A_3046ECE24377A_3043ECE24377A_3045ECE24377A_3044ECE24377A_3030ECE24377A_3042
ECOL316407 ECK2743:JW2718:B2748ECK2740:JW2715:B2745ECK2737:JW2712:B2742ECK2739:JW2714:B2744ECK2738:JW2713:B2743ECK2728:JW2703:B2733ECK2736:JW5437:B2741
ECOL199310 C3315C3312C3308C3311C3310C3294C3306
ECAR218491 ECA3536ECA3533ECA3531ECA3532ECA1053ECA3530
DARO159087 DARO_2363DARO_2522DARO_2524DARO_2523DARO_2347DARO_2521
CVIO243365 CV_3460CV_3681CV_3679CV_3680CV_3661CV_3682
CSAL290398 CSAL_2639CSAL_2636CSAL_2632CSAL_2635CSAL_2634CSAL_0621CSAL_2631
CPSY167879 CPS_1071CPS_1074CPS_1078CPS_1075CPS_1076CPS_4137CPS_1079
CJAP155077 CJA_2224CJA_2221CJA_2219CJA_2220CJA_2356CJA_2218
BVIE269482 BCEP1808_2185BCEP1808_1748BCEP1808_1750BCEP1808_1749BCEP1808_2168BCEP1808_1747
BTHA271848 BTH_I1895BTH_I2752BTH_I2223BTH_I2224BTH_I1913BTH_I2226
BSP36773 BCEP18194_A5412BCEP18194_A4460BCEP18194_A5124BCEP18194_A5123BCEP18194_A5394BCEP18194_A5121
BPSE320373 BURPS668_2576BURPS668_1511BURPS668_2201BURPS668_2200BURPS668_2559BURPS668_2198
BPSE320372 BURPS1710B_A2944BURPS1710B_A1840BURPS1710B_A2569BURPS1710B_A2568BURPS1710B_A2927BURPS1710B_A2566
BPSE272560 BPSL2269BPSL1381BPSL1502BPSL1503BPSL2252BPSL1505
BMAL320389 BMA10247_1465BMA10247_0602BMA10247_1119BMA10247_1118BMA10247_1446BMA10247_1116
BMAL320388 BMASAVP1_A2192BMASAVP1_A1320BMASAVP1_A1847BMASAVP1_A1846BMASAVP1_A2173BMASAVP1_A1844
BMAL243160 BMA_1688BMA_0803BMA_1357BMA_1356BMA_1671BMA_1354
BCEN331272 BCEN2424_2106BCEN2424_1821BCEN2424_1823BCEN2424_1822BCEN2424_2088BCEN2424_1820
BCEN331271 BCEN_5971BCEN_6258BCEN_6256BCEN_6257BCEN_5989BCEN_6259
BAMB398577 BAMMC406_2016BAMMC406_1228BAMMC406_1734BAMMC406_1733BAMMC406_1998BAMMC406_1731
BAMB339670 BAMB_2143BAMB_4030BAMB_1761BAMB_1760BAMB_2124BAMB_1758
ASP76114 EBD109EBA779EBA782EBA781EBA6453EBA778
ASP62928 AZO2143AZO1089AZO1087AZO1088AZO2052AZO1090
ASAL382245 ASA_3474ASA_3471ASA_3467ASA_3470ASA_3469ASA_0568ASA_3466
APLE434271 APJL_0806APJL_1973APJL_1978APJL_1974APJL_1635APJL_1500
APLE416269 APL_0801APL_1926APL_1930APL_1927APL_1602APL_1475
AHYD196024 AHA_0822AHA_0825AHA_0829AHA_0826AHA_0827AHA_3718AHA_0830
AFER243159 AFE_2191AFE_2660AFE_2569AFE_2568AFE_1325AFE_2567
AEHR187272 MLG_1838MLG_1835MLG_1826MLG_1829MLG_1828MLG_1485MLG_1825


Organism features enriched in list (features available for 131 out of the 137 orgs in the list)
Feature    Pvalue       Num occurrences in list  Total num occurrences  
Arrangment:Chains 8.818e-6692
Disease:Bubonic_plague 0.000117666
Disease:Dysentery 0.000117666
Disease:Gastroenteritis 0.00003501013
Disease:Legionnaire's_disease 0.002459344
Endospores:No 2.702e-626211
GC_Content_Range4:0-40 1.005e-216213
GC_Content_Range4:40-60 3.149e-1183224
GC_Content_Range4:60-100 0.009211542145
GC_Content_Range7:30-40 1.404e-146166
GC_Content_Range7:50-60 1.270e-949107
GC_Content_Range7:60-70 0.002127742134
Genome_Size_Range5:2-4 1.740e-819197
Genome_Size_Range5:4-6 5.508e-2389184
Genome_Size_Range5:6-10 0.00002032347
Genome_Size_Range9:2-3 5.509e-87120
Genome_Size_Range9:4-5 4.818e-84396
Genome_Size_Range9:5-6 1.404e-114688
Genome_Size_Range9:6-8 8.337e-72238
Gram_Stain:Gram_Neg 2.332e-22120333
Habitat:Multiple 0.008685250178
Habitat:Specialized 0.0064826553
Motility:No 1.466e-126151
Motility:Yes 1.946e-17102267
Optimal_temp.:- 0.000425174257
Oxygen_Req:Anaerobic 2.379e-93102
Oxygen_Req:Facultative 1.378e-1178201
Pathogenic_in:No 7.162e-630226
Pathogenic_in:Plant 0.0013901915
Shape:Coccus 3.928e-9182
Shape:Rod 3.869e-17117347
Shape:Spiral 0.0013861134
Temp._range:Mesophilic 0.0042904116473
Temp._range:Psychrophilic 0.000564579



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ORGANISMS CONTAINING AT MOST 1 GENES FROM THE GROUP:

Total number of orgs: 117
Effective number of orgs (counting one per cluster within 468 clusters): 96

Organism list
Homologs in each organism in the list
Features enriched in organism list


Follow (ncbi) link, when present, to find the set of organism features for each organism
Org ID  Org Name  # genes in group found in org  
UURE95667 Ureaplasma urealyticum serovar 130
UURE95664 Ureaplasma urealyticum serovar 100
UPAR505682 ncbi Ureaplasma parvum serovar 3 str. ATCC 278150
TWHI218496 ncbi Tropheryma whipplei TW08/270
TWHI203267 ncbi Tropheryma whipplei Twist0
TVOL273116 ncbi Thermoplasma volcanium GSS11
TFUS269800 ncbi Thermobifida fusca YX1
TDEN243275 ncbi Treponema denticola ATCC 354050
TACI273075 ncbi Thermoplasma acidophilum DSM 17281
STRO369723 ncbi Salinispora tropica CNB-4400
STOK273063 ncbi Sulfolobus tokodaii 71
SSUI391295 ncbi Streptococcus suis 05ZYH331
SSOL273057 ncbi Sulfolobus solfataricus P21
SMAR399550 ncbi Staphylothermus marinus F11
SERY405948 ncbi Saccharopolyspora erythraea NRRL 23381
SCO ncbi Streptomyces coelicolor A3(2)1
SAVE227882 ncbi Streptomyces avermitilis MA-46800
SAUR158878 ncbi Staphylococcus aureus aureus Mu501
SARE391037 ncbi Salinispora arenicola CNS-2051
SACI330779 ncbi Sulfolobus acidocaldarius DSM 6391
RTYP257363 ncbi Rickettsia typhi Wilmington1
RSP101510 ncbi Rhodococcus jostii RHA10
RSAL288705 ncbi Renibacterium salmoninarum ATCC 332090
RRIC452659 ncbi Rickettsia rickettsii Iowa0
RRIC392021 ncbi Rickettsia rickettsii Sheila Smith0
RPRO272947 ncbi Rickettsia prowazekii Madrid E0
RMAS416276 ncbi Rickettsia massiliae MTU50
RFEL315456 ncbi Rickettsia felis URRWXCal20
RCON272944 ncbi Rickettsia conorii Malish 70
RCAN293613 ncbi Rickettsia canadensis McKiel0
RBEL391896 ncbi Rickettsia bellii OSU 85-3890
RBEL336407 ncbi Rickettsia bellii RML369-C0
RAKA293614 ncbi Rickettsia akari Hartford0
PMAR74546 ncbi Prochlorococcus marinus MIT 93121
PMAR167546 ncbi Prochlorococcus marinus MIT 93011
PMAR167540 Prochlorococcus marinus pastoris MED4ax1
PMAR146891 ncbi Prochlorococcus marinus AS96011
PINT246198 Prevotella intermedia 171
PAST100379 Onion yellows phytoplasma0
PACN267747 ncbi Propionibacterium acnes KPA1712020
OTSU357244 ncbi Orientia tsutsugamushi Boryong0
NSP35761 Nocardioides sp.1
NSEN222891 ncbi Neorickettsia sennetsu Miyayama1
NFAR247156 ncbi Nocardia farcinica IFM 101520
MVAN350058 ncbi Mycobacterium vanbaalenii PYR-10
MTUB419947 ncbi Mycobacterium tuberculosis H37Ra0
MTUB336982 ncbi Mycobacterium tuberculosis F110
MTBRV ncbi Mycobacterium tuberculosis H37Rv0
MTBCDC ncbi Mycobacterium tuberculosis CDC15510
MSYN262723 ncbi Mycoplasma synoviae 530
MSP189918 ncbi Mycobacterium sp. KMS0
MSP164757 ncbi Mycobacterium sp. JLS0
MSP164756 ncbi Mycobacterium sp. MCS0
MSME246196 ncbi Mycobacterium smegmatis MC2 1551
MSED399549 ncbi Metallosphaera sedula DSM 53481
MPUL272635 ncbi Mycoplasma pulmonis UAB CTIP0
MPNE272634 ncbi Mycoplasma pneumoniae M1290
MPEN272633 ncbi Mycoplasma penetrans HF-20
MMYC272632 ncbi Mycoplasma mycoides mycoides SC str. PG10
MMOB267748 ncbi Mycoplasma mobile 163K0
MLEP272631 ncbi Mycobacterium leprae TN0
MHYO295358 ncbi Mycoplasma hyopneumoniae 2320
MHYO262722 ncbi Mycoplasma hyopneumoniae 74480
MHYO262719 ncbi Mycoplasma hyopneumoniae J0
MGEN243273 ncbi Mycoplasma genitalium G370
MFLO265311 ncbi Mesoplasma florum L11
MCAP340047 ncbi Mycoplasma capricolum capricolum ATCC 273430
MBOV410289 ncbi Mycobacterium bovis BCG str. Pasteur 1173P20
MBOV233413 ncbi Mycobacterium bovis AF2122/970
MAVI243243 ncbi Mycobacterium avium 1040
MART243272 ncbi Mycoplasma arthritidis 158L3-10
MABS561007 ncbi Mycobacterium abscessus ATCC 199770
LXYL281090 ncbi Leifsonia xyli xyli CTCB070
LBRE387344 ncbi Lactobacillus brevis ATCC 3671
LBIF456481 ncbi Leptospira biflexa serovar Patoc strain Patoc 1 (Paris)1
LBIF355278 ncbi Leptospira biflexa serovar Patoc strain Patoc 1 (Ames)1
KRAD266940 ncbi Kineococcus radiotolerans SRS302160
IHOS453591 ncbi Ignicoccus hospitalis KIN4/I1
GOXY290633 ncbi Gluconobacter oxydans 621H0
FSUC59374 ncbi Fibrobacter succinogenes succinogenes S851
FSP1855 Frankia sp. EAN1pec0
FSP106370 ncbi Frankia sp. CcI31
FALN326424 ncbi Frankia alni ACN14a1
DPSY177439 ncbi Desulfotalea psychrophila LSv541
CTRA471473 ncbi Chlamydia trachomatis L2b/UCH-1/proctitis1
CTRA471472 ncbi Chlamydia trachomatis 434/Bu1
CSUL444179 ncbi Candidatus Sulcia muelleri GWSS0
CPNE182082 ncbi Chlamydophila pneumoniae TW-1831
CPNE138677 ncbi Chlamydophila pneumoniae J1381
CPNE115713 ncbi Chlamydophila pneumoniae CWL0291
CPNE115711 ncbi Chlamydophila pneumoniae AR391
CPEL335992 ncbi Candidatus Pelagibacter ubique HTCC10621
CMUR243161 ncbi Chlamydia muridarum Nigg1
CMIC443906 ncbi Clavibacter michiganensis michiganensis NCPPB 3820
CMIC31964 ncbi Clavibacter michiganensis sepedonicus0
CJEI306537 ncbi Corynebacterium jeikeium K4111
CGLU196627 ncbi Corynebacterium glutamicum ATCC 130321
CFEL264202 ncbi Chlamydophila felis Fe/C-561
CEFF196164 ncbi Corynebacterium efficiens YS-3141
CDIP257309 ncbi Corynebacterium diphtheriae NCTC 131290
CCAV227941 ncbi Chlamydophila caviae GPIC1
CABO218497 ncbi Chlamydophila abortus S26/31
BTUR314724 ncbi Borrelia turicatae 91E1350
BLON206672 ncbi Bifidobacterium longum NCC27050
BHER314723 ncbi Borrelia hermsii DAH0
BGAR290434 ncbi Borrelia garinii PBi0
BBUR224326 ncbi Borrelia burgdorferi B310
BAPH372461 ncbi Buchnera aphidicola Cc (Cinara cedri)0
BAFZ390236 ncbi Borrelia afzelii PKo0
AYEL322098 ncbi Aster yellows witches-broom phytoplasma AYWB0
AURANTIMONAS Aurantimonas manganoxydans SI85-9A10
ASP1667 Arthrobacter sp.0
APER272557 ncbi Aeropyrum pernix K11
ANAE240017 Actinomyces oris MG10
AMAR234826 ncbi Anaplasma marginale St. Maries1
ACRY349163 ncbi Acidiphilium cryptum JF-51
AAUR290340 ncbi Arthrobacter aurescens TC10


Names of the homologs of the genes in the group in each of these orgs
  G7424   G7422   EG12111   EG11817   EG10689   EG10625   EG10510   
UURE95667
UURE95664
UPAR505682
TWHI218496
TWHI203267
TVOL273116 TVN1380
TFUS269800 TFU_1808
TDEN243275
TACI273075 TA0214
STRO369723
STOK273063 ST0182
SSUI391295 SSU05_1428
SSOL273057 SSO2599
SMAR399550 SMAR_0720
SERY405948 SACE_6672
SCO SCO6928
SAVE227882
SAUR158878 SAV1561
SARE391037 SARE_3329
SACI330779 SACI_0434
RTYP257363 RT0289
RSP101510
RSAL288705
RRIC452659
RRIC392021
RPRO272947
RMAS416276
RFEL315456
RCON272944
RCAN293613
RBEL391896
RBEL336407
RAKA293614
PMAR74546 PMT9312_1365
PMAR167546 P9301ORF_1481
PMAR167540 PMM1271
PMAR146891 A9601_14701
PINT246198 PIN_A0127
PAST100379
PACN267747
OTSU357244
NSP35761 NOCA_4541
NSEN222891 NSE_0374
NFAR247156
MVAN350058
MTUB419947
MTUB336982
MTBRV
MTBCDC
MSYN262723
MSP189918
MSP164757
MSP164756
MSME246196 MSMEG_6820
MSED399549 MSED_2163
MPUL272635
MPNE272634
MPEN272633
MMYC272632
MMOB267748
MLEP272631
MHYO295358
MHYO262722
MHYO262719
MGEN243273
MFLO265311 MFL270
MCAP340047
MBOV410289
MBOV233413
MAVI243243
MART243272
MABS561007
LXYL281090
LBRE387344 LVIS_1233
LBIF456481 LEPBI_I0458
LBIF355278 LBF_0439
KRAD266940
IHOS453591 IGNI_0877
GOXY290633
FSUC59374 FSU0779
FSP1855
FSP106370 FRANCCI3_1819
FALN326424 FRAAL0277
DPSY177439 DP0275
CTRA471473 CTLON_0465
CTRA471472 CTL0470
CSUL444179
CPNE182082 CPB0269
CPNE138677 CPJ0262
CPNE115713 CPN0262
CPNE115711 CP_0499
CPEL335992 SAR11_0037
CMUR243161 TC_0491
CMIC443906
CMIC31964
CJEI306537 JK1559
CGLU196627 CG0980
CFEL264202 CF0488
CEFF196164 CE0934
CDIP257309
CCAV227941 CCA_00519
CABO218497 CAB506
BTUR314724
BLON206672
BHER314723
BGAR290434
BBUR224326
BAPH372461
BAFZ390236
AYEL322098
AURANTIMONAS
ASP1667
APER272557 APE1011
ANAE240017
AMAR234826 AM451
ACRY349163 ACRY_1780
AAUR290340


Organism features enriched in list (features available for 107 out of the 117 orgs in the list)
Feature    Pvalue       Num occurrences in list  Total num occurrences  
Arrangment:Chains 3.299e-6392
Arrangment:Filaments 0.0033001610
Arrangment:Pairs 0.00015298112
Disease:Pharyngitis 1.033e-688
Disease:Rocky_Mountain_Spotted_Fever 0.006041033
Disease:Tuberculosis 0.006041033
Disease:bronchitis_and_pneumonitis 1.033e-688
Endospores:No 1.769e-660211
GC_Content_Range4:0-40 0.004918950213
GC_Content_Range4:40-60 0.000021123224
GC_Content_Range7:0-30 2.056e-62247
GC_Content_Range7:50-60 0.00010207107
GC_Content_Range7:70-100 6.727e-6911
Genome_Size_Range5:0-2 1.562e-1056155
Genome_Size_Range5:4-6 3.275e-615184
Genome_Size_Range9:0-1 3.291e-132227
Genome_Size_Range9:1-2 0.003027334128
Genome_Size_Range9:4-5 0.0006018796
Genome_Size_Range9:5-6 0.0050574888
Gram_Stain:Gram_Neg 0.001613748333
Gram_Stain:Gram_Pos 0.001139340150
Habitat:Aquatic 0.0012795791
Habitat:Host-associated 7.009e-862206
Habitat:Multiple 0.003968222178
Motility:No 3.645e-851151
Motility:Yes 1.909e-1119267
Optimal_temp.:37 8.765e-636106
Oxygen_Req:Aerobic 0.000059251185
Oxygen_Req:Anaerobic 0.00023297102
Oxygen_Req:Facultative 0.000559223201
Pathogenic_in:No 0.000988328226
Pathogenic_in:Swine 0.004452645
Salinity:Non-halophilic 0.003944629106
Shape:Branched_filament 0.001083244
Shape:Rod 0.003527952347
Shape:Sphere 7.384e-91519



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ORGANISMS ENRICHED FOR GROUP:




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ORGANISMS DEPLETED FOR GROUP:




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PHYLOGENETIC PROFILE SIMILARITY WITH KNOWN PATHWAYS:

Pathways or complexes with absolute value of Pearson coefficient with respect to candidate larger than 0.4 are listed below
The candidate is assumed to exist in orgs listed in section List of organisms containing most genes from the group


Pathway or complex  # Orgs containing it  # of those orgs also containing candidate  Pearson Coeff  
AST-PWY (arginine degradation II (AST pathway))120980.7037
COBALSYN-PWY (adenosylcobalamin salvage from cobinamide I)1951160.6111
GLYCOCAT-PWY (glycogen degradation I)2461290.5938
PWY0-1241 (ADP-L-glycero-β-D-manno-heptose biosynthesis)2181210.5937
PWY-5755 (4-hydroxybenzoate biosynthesis II (bacteria and fungi))81660.5553
KDO-LIPASYN-PWY (KDO2-lipid A biosynthesis I)2251160.5367
LIPA-CORESYN-PWY (Lipid A-core biosynthesis)1761010.5362
PWY-5111 (CMP-KDO biosynthesis II (from D-arabinose 5-phosphate))3001350.5354
PWY-5918 (heme biosynthesis I)2721280.5328
GALACTITOLCAT-PWY (galactitol degradation)73600.5295
PWY-5148 (acyl-CoA hydrolysis)2271150.5241
PHOSLIPSYN-PWY (phospholipid biosynthesis I)2901300.5146
PWY4FS-7 (phosphatidylglycerol biosynthesis I (plastidic))2911300.5127
GLUCONSUPER-PWY (D-gluconate degradation)2291140.5116
PWY0-1319 (CDP-diacylglycerol biosynthesis II)2961310.5115
PWY0-1182 (trehalose degradation II (trehalase))70570.5106
HEME-BIOSYNTHESIS-II (heme biosynthesis from uroporphyrinogen-III I)2861280.5063
3-HYDROXYPHENYLACETATE-DEGRADATION-PWY (4-hydroxyphenylacetate degradation)149880.5018
PWY-1269 (CMP-KDO biosynthesis I)3251360.5006
ENTNER-DOUDOROFF-PWY (Entner-Doudoroff pathway I)2491180.5004
GLYCOLYSIS-E-D (superpathway of glycolysis and Entner-Doudoroff)2491180.5004
PWY-4041 (γ-glutamyl cycle)2791250.4960
PWY0-981 (taurine degradation IV)106710.4919
PWY-5386 (methylglyoxal degradation I)3051300.4879
ECASYN-PWY (enterobacterial common antigen biosynthesis)1911000.4875
GLUTATHIONESYN-PWY (glutathione biosynthesis)3391370.4860
PWY0-1329 (succinate to cytochrome bo oxidase electron transfer)96660.4819
TYRFUMCAT-PWY (tyrosine degradation I)184960.4718
GLUCARDEG-PWY (D-glucarate degradation I)152850.4654
NAGLIPASYN-PWY (lipid IVA biosynthesis)3481360.4642
LIPASYN-PWY (phospholipases)2121030.4612
THREONINE-DEG2-PWY (threonine degradation II)2141030.4565
PWY0-541 (cyclopropane fatty acid (CFA) biosynthesis)3001240.4501
PWY-5913 (TCA cycle variation IV)3011240.4483
PWY-6134 (tyrosine biosynthesis IV)89590.4367
PWY-5861 (superpathway of demethylmenaquinone-8 biosynthesis)50410.4280
PWY0-1353 (succinate to cytochrome bd oxidase electron transfer)178890.4277
CHOLINE-BETAINE-ANA-PWY (choline degradation I)135750.4262
BETSYN-PWY (glycine betaine biosynthesis I (Gram-negative bacteria))138760.4261
P184-PWY (protocatechuate degradation I (meta-cleavage pathway))94600.4258
LPSSYN-PWY (superpathway of lipopolysaccharide biosynthesis)91580.4169
PWY0-845 (superpathway of pyridoxal 5'-phosphate biosynthesis and salvage)3291250.4087
LACTOSEUTIL-PWY (lactose degradation II)53410.4076
GLUCARGALACTSUPER-PWY (superpathway of D-glucarate and D-galactarate degradation)135730.4074
SULFATE-CYS-PWY (superpathway of sulfate assimilation and cysteine biosynthesis)3651320.4070
4AMINOBUTMETAB-PWY (superpathway of 4-aminobutyrate degradation)212960.4039
GLUTAMINDEG-PWY (glutamine degradation I)191900.4034
PWY-561 (superpathway of glyoxylate cycle)162810.4009



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PAIRWISE GENOME CONTEXT SCORE MATRIX:

  G7422   EG12111   EG11817   EG10689   EG10625   EG10510   
G74240.9995690.9994290.9994310.9994110.9990660.999321
G74220.9995450.9995520.9994910.9988310.999403
EG121110.999860.9998780.9987140.999655
EG118170.9998660.9986810.999567
EG106890.9988060.999616
EG106250.998762
EG10510



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PAIRWISE BLAST SCORES:

  G7424   G7422   EG12111   EG11817   EG10689   EG10625   EG10510   
G74240.0f0------
G7422-0.0f0-----
EG12111--0.0f0----
EG11817---0.0f0---
EG10689----0.0f0--
EG10625-----0.0f0-
EG10510------0.0f0



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PATHWAYS OR PROTEIN COMPLEX MATCHES IN TARGET ORG:

For each case, all genes involved in the pathway or complex are listed. For each gene we list: a tag indicating whether the gene is part of the candidate list or not, the average and the minimum scores of the gene to the candidate list, the gene name, and its product names.



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GENOME CONTEXT INFORMATION:

Each row corresponds to a replicon in an organism, each column to a gene in the candidate. The second column indicates whether the organims was included in the list used to compute the genome context scores or not. Some organisms are not included because they are phylogenetically too similar to others already in the list.
The number in the matrix indicate the position of the homolog of the gene in the replicon. All numbers are relative to the smaller one, which is assigned a position of zero. Two columns with the same number indicate that the two genes matched the same gene in that organism.

Genome browser links for gene clusters

The links below opens a genome browser BioCyc page for each cluster of genes in the target genome. These pages shows the central gene of the cluster in the target genome and its best homolog in the reference genomes, for the genomes that contain homologs for at least 75% of the genes in the group. Only one genome per phylogenetic cluster of organisms is shown, to keep the list smaller.

EG10510 EG10689 EG11817 EG12111 G7422 G7424 (centered at EG11817)
EG10625 (centered at EG10625)


ORG:REPLICON:CIRC?\GENE  IN REF LIST  G7424   G7422   EG12111   EG11817   EG10689   EG10625   EG10510   
188/623198/623282/623397/623318/623411/623332/623
AAEO224324:0:Tyes-1000-367-0-
AAVE397945:0:Tyes0-959394723-
ABAC204669:0:Tyes----0224-
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