CANDIDATE ID: 308

CANDIDATE ID: 308

NUMBER OF GENES: 7
AVERAGE SCORE:    9.9914043e-1 (range=[0.0,1.0])
AVERAGE MINIMUM BLAST P-VAL:    1.0000000e+0

Gene List
List of organisms containing most genes from the group
    Phylogenetic tree highlighting these organisms (opens new page)
List of organisms containing very few or no genes from the group
List of organisms enriched for group
List of organisms depleted for group
Phylogenetic profile similarity with known pathways
Pairwise genome context scores
Pairwise Blast scores
Pathway or protein complex matches in target organism
Genome context matrix
    Genes and their orthologs in genome browser BioCyc pages



GENE LIST:

- G6465 (lolA) (b0891)
   Products of gene:
     - G6465-MONOMER (periplasmic chaperone, effects translocation of lipoproteins from inner membrane to outer)

- G6464 (ftsK) (b0890)
   Products of gene:
     - G6464-MONOMER (essential cell division protein FtsK)
     - CPLX0-3959 (Xer site-specific recombination system)

- G6463 (clpS) (b0881)
   Products of gene:
     - G6463-MONOMER (specificity factor for ClpA-ClpP chaperone-protease complex)

- EG11112 (aat) (b0885)
   Products of gene:
     - EG11112-MONOMER (leucyl, phenylalanyl-tRNA-protein transferase)
       Reactions:
        L-leucyl-tRNAleu + a protein  =  L-leucyl-protein + a tRNA

- EG11111 (cspD) (b0880)
   Products of gene:
     - EG11111-MONOMER (DNA replication inhibitor)
     - CPLX0-3301 (DNA replication inhibitor)

- EG10947 (serS) (b0893)
   Products of gene:
     - SERS-MONOMER (seryl-tRNA synthetase)
     - SERS-CPLX (seryl-tRNA synthetase)
       Reactions:
        tRNAsec + L-serine + ATP  ->  L-seryl-tRNAsec + diphosphate + AMP
         In pathways
         PWY0-901 (selenocysteine biosynthesis I (bacteria))
         PWY-6281 (PWY-6281)
        tRNAser + L-serine + ATP  ->  L-seryl-tRNAser + diphosphate + AMP
         In pathways
         TRNA-CHARGING-PWY (tRNA charging pathway)

- EG10504 (infA) (bypA1)
   Products of gene:
     - EG10504-MONOMER (protein chain initiation factor IF-1)



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ORGANISMS CONTAINING AT LEAST 6 GENES FROM THE GROUP:

Total number of orgs: 160
Effective number of orgs (counting one per cluster within 468 clusters): 100

Organism list
Homologs in each organism in the list
Features enriched in organism list


Follow (ncbi) link, when present, to find the set of organism features for each organism
Org ID  Org Name  # genes in group found in org  
YPSE349747 ncbi Yersinia pseudotuberculosis IP 317587
YPSE273123 ncbi Yersinia pseudotuberculosis IP 329537
YPES386656 ncbi Yersinia pestis Pestoides F7
YPES377628 ncbi Yersinia pestis Nepal5167
YPES360102 ncbi Yersinia pestis Antiqua7
YPES349746 ncbi Yersinia pestis Angola7
YPES214092 ncbi Yersinia pestis CO927
YPES187410 ncbi Yersinia pestis KIM 106
YENT393305 ncbi Yersinia enterocolitica enterocolitica 80817
XORY360094 ncbi Xanthomonas oryzae pv. oryzae PXO99A7
XORY342109 ncbi Xanthomonas oryzae pv. oryzae MAFF 3110187
XORY291331 ncbi Xanthomonas oryzae pv. oryzae KACC103317
XFAS405440 ncbi Xylella fastidiosa M126
XFAS183190 ncbi Xylella fastidiosa Temecula16
XFAS160492 ncbi Xylella fastidiosa 9a5c7
XCAM487884 Xanthomonas campestris pv. paulliniae7
XCAM316273 ncbi Xanthomonas campestris pv. vesicatoria str. 85-107
XCAM314565 ncbi Xanthomonas campestris pv. campestris str. 80047
XCAM190485 ncbi Xanthomonas campestris pv. campestris str. ATCC 339137
XAXO190486 ncbi Xanthomonas axonopodis pv. citri str. 3067
VVUL216895 ncbi Vibrio vulnificus CMCP67
VVUL196600 ncbi Vibrio vulnificus YJ0166
VPAR223926 ncbi Vibrio parahaemolyticus RIMD 22106337
VFIS312309 ncbi Vibrio fischeri ES1147
VCHO345073 ncbi Vibrio cholerae O3957
VCHO ncbi Vibrio cholerae O1 biovar El Tor str. N169617
TTUR377629 ncbi Teredinibacter turnerae T79017
TDEN292415 ncbi Thiobacillus denitrificans ATCC 252597
TCRU317025 ncbi Thiomicrospira crunogena XCL-26
STYP99287 ncbi Salmonella enterica enterica serovar Typhimurium str. LT27
SSP94122 ncbi Shewanella sp. ANA-37
SSON300269 ncbi Shigella sonnei Ss0467
SSED425104 ncbi Shewanella sediminis HAW-EB37
SPRO399741 ncbi Serratia proteamaculans 5687
SPEA398579 ncbi Shewanella pealeana ATCC 7003457
SONE211586 ncbi Shewanella oneidensis MR-17
SLOI323850 ncbi Shewanella loihica PV-47
SHIGELLA ncbi Shigella flexneri 2a str. 2457T7
SHAL458817 ncbi Shewanella halifaxensis HAW-EB47
SGLO343509 ncbi Sodalis glossinidius morsitans6
SFLE373384 ncbi Shigella flexneri 5 str. 84017
SFLE198214 ncbi Shigella flexneri 2a str. 3017
SENT454169 ncbi Salmonella enterica enterica serovar Heidelberg str. SL4767
SENT321314 ncbi Salmonella enterica enterica serovar Choleraesuis str. SC-B677
SENT295319 ncbi Salmonella enterica enterica serovar Paratyphi A str. ATCC 91507
SENT220341 ncbi Salmonella enterica enterica serovar Typhi str. CT187
SENT209261 ncbi Salmonella enterica enterica serovar Typhi str. Ty27
SDYS300267 ncbi Shigella dysenteriae Sd1977
SDEN318161 ncbi Shewanella denitrificans OS2177
SDEG203122 ncbi Saccharophagus degradans 2-407
SBOY300268 ncbi Shigella boydii Sb2277
SBAL402882 ncbi Shewanella baltica OS1857
SBAL399599 ncbi Shewanella baltica OS1957
RSOL267608 ncbi Ralstonia solanacearum GMI10007
RMET266264 ncbi Ralstonia metallidurans CH347
RFER338969 ncbi Rhodoferax ferrireducens T1186
REUT381666 ncbi Ralstonia eutropha H167
REUT264198 ncbi Ralstonia eutropha JMP1346
PSYR223283 ncbi Pseudomonas syringae pv. tomato str. DC30007
PSYR205918 ncbi Pseudomonas syringae pv. syringae B728a7
PSTU379731 ncbi Pseudomonas stutzeri A15017
PSP56811 Psychrobacter sp.7
PSP312153 ncbi Polynucleobacter necessarius asymbioticus QLW-P1DMWA-16
PSP296591 ncbi Polaromonas sp. JS6666
PPUT76869 ncbi Pseudomonas putida GB-17
PPUT351746 ncbi Pseudomonas putida F17
PPUT160488 ncbi Pseudomonas putida KT24407
PPRO298386 ncbi Photobacterium profundum SS97
PMEN399739 ncbi Pseudomonas mendocina ymp7
PLUM243265 ncbi Photorhabdus luminescens laumondii TTO17
PING357804 ncbi Psychromonas ingrahamii 376
PHAL326442 ncbi Pseudoalteromonas haloplanktis TAC1257
PFLU220664 ncbi Pseudomonas fluorescens Pf-57
PFLU216595 ncbi Pseudomonas fluorescens SBW257
PFLU205922 ncbi Pseudomonas fluorescens Pf0-17
PENT384676 ncbi Pseudomonas entomophila L487
PCRY335284 ncbi Psychrobacter cryohalolentis K57
PATL342610 ncbi Pseudoalteromonas atlantica T6c7
PARC259536 ncbi Psychrobacter arcticus 273-47
PAER208964 ncbi Pseudomonas aeruginosa PAO17
PAER208963 ncbi Pseudomonas aeruginosa UCBPP-PA147
NOCE323261 ncbi Nitrosococcus oceani ATCC 197076
NMUL323848 ncbi Nitrosospira multiformis ATCC 251967
NMEN374833 ncbi Neisseria meningitidis 0534427
NMEN272831 ncbi Neisseria meningitidis FAM187
NMEN122587 ncbi Neisseria meningitidis Z24917
NMEN122586 ncbi Neisseria meningitidis MC587
NGON242231 ncbi Neisseria gonorrhoeae FA 10907
NEUT335283 ncbi Nitrosomonas eutropha C917
NEUR228410 ncbi Nitrosomonas europaea ATCC 197187
MSP400668 ncbi Marinomonas sp. MWYL17
MPET420662 ncbi Methylibium petroleiphilum PM17
MFLA265072 ncbi Methylobacillus flagellatus KT7
MCAP243233 ncbi Methylococcus capsulatus Bath6
MAQU351348 ncbi Marinobacter aquaeolei VT86
LPNE400673 ncbi Legionella pneumophila Corby7
LPNE297246 ncbi Legionella pneumophila Paris7
LPNE297245 ncbi Legionella pneumophila Lens7
LPNE272624 ncbi Legionella pneumophila pneumophila Philadelphia 17
LCHO395495 ncbi Leptothrix cholodnii SP-67
KPNE272620 ncbi Klebsiella pneumoniae pneumoniae MGH 785787
JSP375286 ncbi Janthinobacterium sp. Marseille7
ILOI283942 ncbi Idiomarina loihiensis L2TR7
HHAL349124 ncbi Halorhodospira halophila SL16
HCHE349521 ncbi Hahella chejuensis KCTC 23967
HARS204773 ncbi Herminiimonas arsenicoxydans7
ESP42895 Enterobacter sp.7
EFER585054 ncbi Escherichia fergusonii ATCC 354697
ECOO157 ncbi Escherichia coli O157:H7 EDL9337
ECOL83334 Escherichia coli O157:H77
ECOL585397 ncbi Escherichia coli ED1a7
ECOL585057 ncbi Escherichia coli IAI397
ECOL585056 ncbi Escherichia coli UMN0267
ECOL585055 ncbi Escherichia coli 559897
ECOL585035 ncbi Escherichia coli S887
ECOL585034 ncbi Escherichia coli IAI17
ECOL481805 ncbi Escherichia coli ATCC 87397
ECOL469008 ncbi Escherichia coli BL21(DE3)7
ECOL439855 ncbi Escherichia coli SMS-3-57
ECOL413997 ncbi Escherichia coli B str. REL6067
ECOL409438 ncbi Escherichia coli SE117
ECOL364106 ncbi Escherichia coli UTI897
ECOL362663 ncbi Escherichia coli 5367
ECOL331111 ncbi Escherichia coli E24377A7
ECOL316407 ncbi Escherichia coli K-12 substr. W31107
ECOL199310 ncbi Escherichia coli CFT0737
ECAR218491 ncbi Pectobacterium atrosepticum SCRI10437
DPSY177439 ncbi Desulfotalea psychrophila LSv546
DNOD246195 ncbi Dichelobacter nodosus VCS1703A6
DARO159087 ncbi Dechloromonas aromatica RCB7
CVIO243365 ncbi Chromobacterium violaceum ATCC 124727
CSAL290398 ncbi Chromohalobacter salexigens DSM 30437
CPSY167879 ncbi Colwellia psychrerythraea 34H7
CJAP155077 Cellvibrio japonicus7
BVIE269482 ncbi Burkholderia vietnamiensis G47
BTHA271848 ncbi Burkholderia thailandensis E2647
BSP36773 Burkholderia sp.7
BPSE320373 ncbi Burkholderia pseudomallei 6687
BPSE320372 ncbi Burkholderia pseudomallei 1710b7
BPSE272560 ncbi Burkholderia pseudomallei K962437
BPET94624 Bordetella petrii7
BPER257313 ncbi Bordetella pertussis Tohama I7
BPAR257311 ncbi Bordetella parapertussis 128227
BMAL320389 ncbi Burkholderia mallei NCTC 102477
BMAL320388 ncbi Burkholderia mallei SAVP17
BMAL243160 ncbi Burkholderia mallei ATCC 233447
BCEN331272 ncbi Burkholderia cenocepacia HI24246
BCEN331271 ncbi Burkholderia cenocepacia AU 10546
BBRO257310 ncbi Bordetella bronchiseptica RB507
BAMB398577 ncbi Burkholderia ambifaria MC40-67
BAMB339670 ncbi Burkholderia ambifaria AMMD7
ASP76114 ncbi Aromatoleum aromaticum EbN16
ASP62977 ncbi Acinetobacter sp. ADP16
ASP62928 ncbi Azoarcus sp. BH727
ASAL382245 ncbi Aeromonas salmonicida salmonicida A4497
AHYD196024 Aeromonas hydrophila dhakensis7
AFER243159 ncbi Acidithiobacillus ferrooxidans ATCC 232706
AEHR187272 ncbi Alkalilimnicola ehrlichii MLHE-16
ABOR393595 ncbi Alcanivorax borkumensis SK27
ABAU360910 ncbi Bordetella avium 197N7


Names of the homologs of the genes in the group in each of these orgs
  G6465   G6464   G6463   EG11112   EG11111   EG10947   EG10504   
YPSE349747 YPSIP31758_2595YPSIP31758_2596YPSIP31758_2607YPSIP31758_2603YPSIP31758_2609YPSIP31758_2593YPSIP31758_2604
YPSE273123 YPTB1402YPTB1401YPTB1393YPTB1396YPTB1392YPTB1404YPTB1395
YPES386656 YPDSF_2318YPDSF_2319YPDSF_2328YPDSF_2324YPDSF_2330YPDSF_2316YPDSF_2325
YPES377628 YPN_2603YPN_2604YPN_2613YPN_2609YPN_2614YPN_2601YPN_2610
YPES360102 YPA_0667YPA_0666YPA_0657YPA_0661YPA_0656YPA_0669YPA_0660
YPES349746 YPANGOLA_A1614YPANGOLA_A1613YPANGOLA_A1600YPANGOLA_A1604YPANGOLA_A1599YPANGOLA_A1616YPANGOLA_A1603
YPES214092 YPO1377YPO1376YPO1367YPO1371YPO1366YPO1379YPO1370
YPES187410 Y2798Y2800Y2810Y2806Y2796Y2807
YENT393305 YE1526YE1525YE1517YE1520YE1516YE1528YE1519
XORY360094 XOOORF_2775XOOORF_2777XOOORF_2786XOOORF_2783XOOORF_3133XOOORF_2888XOOORF_2784
XORY342109 XOO2403XOO2405XOO2413XOO2410XOO1765XOO1988XOO2411
XORY291331 XOO2544XOO2546XOO2554XOO2551XOO1870XOO2116XOO2552
XFAS405440 XFASM12_0795XFASM12_0793XFASM12_0785XFASM12_0789XFASM12_1477XFASM12_0788
XFAS183190 PD_0672PD_0670PD_0664PD_0667PD_1318PD_0666
XFAS160492 XF1452XF1450XF1442XF1446XF2352XF2286XF1445
XCAM487884 XCC-B100_2273XCC-B100_2271XCC-B100_2265XCC-B100_2268XCC-B100_3017XCC-B100_2666XCC-B100_2267
XCAM316273 XCAORF_2254XCAORF_2252XCAORF_2245XCAORF_2248XCAORF_1541XCAORF_1873XCAORF_2247
XCAM314565 XC_2211XC_2213XC_2219XC_2216XC_2955XC_2640XC_2217
XCAM190485 XCC1974XCC1972XCC1966XCC1969XCC1286XCC1594XCC1968
XAXO190486 XAC2008XAC2006XAC2000XAC2003XAC1337XAC1653XAC2002
VVUL216895 VV1_2949VV1_2950VV1_2120VV1_2124VV1_2119VV1_2946VV1_2123
VVUL196600 VV1323VV1322VV2323VV2324VV1325VV2321
VPAR223926 VP1106VP1105VP1013VP1018VP1012VP1108VP1016
VFIS312309 VF0906VF0905VF1766VF1762VF1767VF0908VF1764
VCHO345073 VC0395_A0626VC0395_A1493VC0395_A0713VC0395_A1336VC0395_A0712VC0395_A0628VC0395_A1338
VCHO VC1107VC1903VC1143VC1735VC1142VC1110VC1737
TTUR377629 TERTU_1970TERTU_1969TERTU_1962TERTU_1967TERTU_1961TERTU_1973TERTU_1964
TDEN292415 TBD_1497TBD_1002TBD_1236TBD_2043TBD_0855TBD_1229TBD_0426
TCRU317025 TCR_0765TCR_0764TCR_1111TCR_1114TCR_0768TCR_1113
STYP99287 STM0961STM0960STM0944STM0955STM0943STM0963STM0953
SSP94122 SHEWANA3_2051SHEWANA3_2050SHEWANA3_1752SHEWANA3_1756SHEWANA3_1751SHEWANA3_2054SHEWANA3_1754
SSON300269 SSO_0892SSO_0891SSO_0882SSO_0886SSO_0867SSO_0894SSO_0885
SSED425104 SSED_2128SSED_2127SSED_1885SSED_1889SSED_1884SSED_2131SSED_1887
SPRO399741 SPRO_1684SPRO_1683SPRO_1673SPRO_1676SPRO_1672SPRO_1686SPRO_1675
SPEA398579 SPEA_2232SPEA_2233SPEA_2533SPEA_2529SPEA_2534SPEA_2229SPEA_2531
SONE211586 SO_2307SO_2306SO_2627SO_2623SO_2628SO_2310SO_2625
SLOI323850 SHEW_2023SHEW_2024SHEW_1565SHEW_1569SHEW_1564SHEW_2020SHEW_1567
SHIGELLA LOLAFTSKYLJAAATCSPDSERSINFA
SHAL458817 SHAL_2216SHAL_2217SHAL_1720SHAL_1724SHAL_1719SHAL_2213SHAL_1722
SGLO343509 SG1109SG1108SG1101SG1100SG1111SG1103
SFLE373384 SFV_0882SFV_0881SFV_0872SFV_0876SFV_0871SFV_0884SFV_0875
SFLE198214 AAN42483.1AAN42482.1AAN42474.1AAN42477.1AAN42473.1AAN42485.1AAN42476.1
SENT454169 SEHA_C1060SEHA_C1059SEHA_C1043SEHA_C1054SEHA_C1042SEHA_C1062SEHA_C1053
SENT321314 SCH_0915SCH_0914SCH_0899SCH_0909SCH_0898SCH_0917SCH_0907
SENT295319 SPA1837SPA1838SPA1855SPA1843SPA1856SPA1835SPA1845
SENT220341 STY0959STY0958STY0942STY0953STY0939STY0961STY0951
SENT209261 T1973T1974T1989T1979T1990T1971T1980
SDYS300267 SDY_2370SDY_2371SDY_2380SDY_2376SDY_2381SDY_2368SDY_2377
SDEN318161 SDEN_1744SDEN_1743SDEN_1833SDEN_1837SDEN_1832SDEN_1747SDEN_1835
SDEG203122 SDE_1694SDE_1693SDE_1686SDE_1691SDE_1685SDE_1697SDE_1688
SBOY300268 SBO_0824SBO_0823SBO_0814SBO_0818SBO_0813SBO_0826SBO_0817
SBAL402882 SHEW185_2214SHEW185_2215SHEW185_2466SHEW185_2462SHEW185_2467SHEW185_2211SHEW185_2464
SBAL399599 SBAL195_2322SBAL195_2323SBAL195_2586SBAL195_2582SBAL195_2587SBAL195_2319SBAL195_2584
RSOL267608 RSC2340RSP0884RSC2465RSC1617RSC2466RSC2337RSC2998
RMET266264 RMET_0686RMET_1596RMET_2893RMET_1216RMET_5818RMET_0695RMET_3296
RFER338969 RFER_3177RFER_3178RFER_2760RFER_2349RFER_3243RFER_4222
REUT381666 H16_A0755H16_A1582H16_A3053H16_A1403H16_B0002H16_A0764H16_A3463
REUT264198 REUT_A2599REUT_A2600REUT_A2753REUT_A1319REUT_C6028REUT_A2594
PSYR223283 PSPTO_3348PSPTO_3349PSPTO_3354PSPTO_3350PSPTO_3355PSPTO_3345PSPTO_3352
PSYR205918 PSYR_3178PSYR_3179PSYR_3184PSYR_3180PSYR_3185PSYR_3175PSYR_3182
PSTU379731 PST_2292PST_2293PST_2299PST_2295PST_2300PST_2289PST_2297
PSP56811 PSYCPRWF_0893PSYCPRWF_0620PSYCPRWF_1596PSYCPRWF_0618PSYCPRWF_0613PSYCPRWF_1539PSYCPRWF_1932
PSP312153 PNUC_0690PNUC_1749PNUC_0743PNUC_0586PNUC_0692PNUC_0074
PSP296591 BPRO_3798BPRO_3799BPRO_2941BPRO_2326BPRO_0953BPRO_0496
PPUT76869 PPUTGB1_3608PPUTGB1_3609PPUTGB1_3614PPUTGB1_3610PPUTGB1_3615PPUTGB1_3605PPUTGB1_3612
PPUT351746 PPUT_1830PPUT_1829PPUT_1824PPUT_1828PPUT_1823PPUT_1833PPUT_1826
PPUT160488 PP_4003PP_4004PP_4009PP_4005PP_4010PP_4000PP_4007
PPRO298386 PBPRA1163PBPRA1162PBPRA1151PBPRA1155PBPRA1150PBPRA1165PBPRA1153
PMEN399739 PMEN_2387PMEN_2388PMEN_2394PMEN_2390PMEN_2395PMEN_2384PMEN_2392
PLUM243265 PLU1602PLU1601PLU1593PLU1596PLU1592PLU1604PLU1595
PING357804 PING_1663PING_1662PING_0742PING_2258PING_1666PING_0744
PHAL326442 PSHAA1715PSHAA1716PSHAA1725PSHAA1721PSHAA1726PSHAA1712PSHAA1723
PFLU220664 PFL_3879PFL_3880PFL_3886PFL_3882PFL_3887PFL_3876PFL_3884
PFLU216595 PFLU3800PFLU3801PFLU3806PFLU3802PFLU3807PFLU3797PFLU3804
PFLU205922 PFL_3585PFL_3586PFL_3591PFL_3587PFL_3592PFL_3582PFL_3589
PENT384676 PSEEN2213PSEEN2212PSEEN2206PSEEN2210PSEEN2205PSEEN2216PSEEN2208
PCRY335284 PCRYO_1753PCRYO_0430PCRYO_1678PCRYO_0428PCRYO_2133PCRYO_1850PCRYO_1569
PATL342610 PATL_2459PATL_2460PATL_2375PATL_2371PATL_2376PATL_2456PATL_2373
PARC259536 PSYC_1571PSYC_0389PSYC_1499PSYC_0387PSYC_1846PSYC_1618PSYC_1409
PAER208964 PA2614PA2615PA2621PA2617PA2622PA2612PA2619
PAER208963 PA14_30310PA14_30290PA14_30210PA14_30270PA14_30200PA14_30330PA14_30240
NOCE323261 NOC_0348NOC_0347NOC_2426NOC_2596NOC_1036NOC_2598
NMUL323848 NMUL_A0178NMUL_A0176NMUL_A2247NMUL_A2709NMUL_A2246NMUL_A0180NMUL_A0788
NMEN374833 NMCC_0570NMCC_1226NMCC_0795NMCC_1942NMCC_0796NMCC_1597NMCC_1987B
NMEN272831 NMC0566NMC1251NMC0775NMC0198NMC0776NMC1602NMC0153
NMEN122587 NMA0830NMA1527NMA1046NMA0063NMA1047NMA1943NMA0108
NMEN122586 NMB_0622NMB_1314NMB_0837NMB_0206NMB_0838NMB_1684NMB_0163
NGON242231 NGO0205NGO0851NGO0409NGO1778NGO0410NGO1335NGO18211
NEUT335283 NEUT_2489NEUT_2488NEUT_2047NEUT_0648NEUT_2046NEUT_0263NEUT_0579
NEUR228410 NE1052NE1051NE1732NE2219NE1731NE0180NE0422
MSP400668 MMWYL1_3255MMWYL1_3256MMWYL1_3261MMWYL1_3258MMWYL1_3262MMWYL1_3252MMWYL1_3259
MPET420662 MPE_A1121MPE_A1120MPE_A2462MPE_A1469MPE_A2463MPE_A2692MPE_A3422
MFLA265072 MFLA_1125MFLA_1124MFLA_0509MFLA_1076MFLA_2140MFLA_1129MFLA_0300
MCAP243233 MCA_1783MCA_1695MCA_1788MCA_1792MCA_1971MCA_1790
MAQU351348 MAQU_1549MAQU_1550MAQU_1758MAQU_1759MAQU_1547MAQU_1756
LPNE400673 LPC_1206LPC_1207LPC_2478LPC_1209LPC_2917LPC_2833LPC_1211
LPNE297246 LPP1729LPP1730LPP0879LPP1732LPP0493LPP0575LPP1734
LPNE297245 LPL1729LPL1730LPL0850LPL1732LPL0469LPL0551LPL1734
LPNE272624 LPG1765LPG1766LPG0817LPG1768LPG0426LPG0513LPG1770
LCHO395495 LCHO_0757LCHO_0756LCHO_1663LCHO_1978LCHO_1662LCHO_0692LCHO_3928
KPNE272620 GKPORF_B5364GKPORF_B5363GKPORF_B5353GKPORF_B5356GKPORF_B5352GKPORF_B5366GKPORF_B5355
JSP375286 MMA_1155MMA_1154MMA_2515MMA_2511MMA_2516MMA_1157MMA_3390
ILOI283942 IL0666IL0667IL0675IL0671IL0676IL0663IL0673
HHAL349124 HHAL_1394HHAL_1396HHAL_1401HHAL_1397HHAL_1392HHAL_1399
HCHE349521 HCH_02446HCH_02445HCH_02338HCH_02343HCH_02337HCH_02449HCH_02340
HARS204773 HEAR1019HEAR1018HEAR2446HEAR2442HEAR2448HEAR1022HEAR3145
ESP42895 ENT638_1415ENT638_1414ENT638_1398ENT638_1409ENT638_1397ENT638_1417ENT638_1407
EFER585054 EFER_1040EFER_1039EFER_1029EFER_1033EFER_1028EFER_1042EFER_1032
ECOO157 LOLAFTSKYLJAAATCSPDSERSINFA
ECOL83334 ECS0976ECS0975ECS0967ECS0970ECS0966ECS0978ECS0969
ECOL585397 ECED1_0865ECED1_0864ECED1_0848ECED1_0859ECED1_0847ECED1_0867ECED1_0858
ECOL585057 ECIAI39_2257ECIAI39_2260ECIAI39_2270ECIAI39_2265ECIAI39_2272ECIAI39_2255ECIAI39_2266
ECOL585056 ECUMN_1086ECUMN_1085ECUMN_1076ECUMN_1080ECUMN_1075ECUMN_1088ECUMN_1079
ECOL585055 EC55989_0936EC55989_0935EC55989_0926EC55989_0930EC55989_0925EC55989_0938EC55989_0929
ECOL585035 ECS88_0922ECS88_0921ECS88_0903ECS88_0914ECS88_0902ECS88_0924ECS88_0913
ECOL585034 ECIAI1_0931ECIAI1_0930ECIAI1_0921ECIAI1_0925ECIAI1_0920ECIAI1_0933ECIAI1_0924
ECOL481805 ECOLC_2705ECOLC_2706ECOLC_2715ECOLC_2711ECOLC_2716ECOLC_2703ECOLC_2712
ECOL469008 ECBD_2704ECBD_2705ECBD_2713ECBD_2710ECBD_2714ECBD_2702ECBD_2711
ECOL439855 ECSMS35_2229ECSMS35_2230ECSMS35_2279ECSMS35_2236ECSMS35_2280ECSMS35_2227ECSMS35_2237
ECOL413997 ECB_00895ECB_00894ECB_00886ECB_00889ECB_00885ECB_00897ECB_00888
ECOL409438 ECSE_0949ECSE_0948ECSE_0939ECSE_0943ECSE_0938ECSE_0951ECSE_0942
ECOL364106 UTI89_C0906UTI89_C0905UTI89_C0887UTI89_C0900UTI89_C0885UTI89_C0908UTI89_C0899
ECOL362663 ECP_0905ECP_0904ECP_0896ECP_0899ECP_0895ECP_0907ECP_0898
ECOL331111 ECE24377A_0966ECE24377A_0965ECE24377A_0954ECE24377A_0958ECE24377A_0953ECE24377A_0968ECE24377A_0957
ECOL316407 ECK0882:JW0874:B0891ECK0881:JW0873:B0890ECK0872:JW0865:B0881ECK0876:JW0868:B0885ECK0871:JW0864:B0880ECK0884:JW0876:B0893ECK0875:JW0867:B0884
ECOL199310 C1028C1027C1018C1022C1017C1030C1021
ECAR218491 ECA2646ECA2647ECA2657ECA2652ECA2659ECA2644ECA2653
DPSY177439 DP1103DP0887DP1903DP0960DP1764DP1147
DNOD246195 DNO_0484DNO_0483DNO_0656DNO_0680DNO_1065DNO_1198
DARO159087 DARO_1296DARO_1295DARO_3094DARO_1196DARO_3093DARO_1300DARO_0340
CVIO243365 CV_1614CV_2479CV_3668CV_1798CV_3667CV_1375CV_4165
CSAL290398 CSAL_2435CSAL_2436CSAL_2441CSAL_2437CSAL_1668CSAL_2315CSAL_2439
CPSY167879 CPS_2758CPS_2759CPS_2894CPS_2763CPS_2895CPS_2755CPS_2765
CJAP155077 CJA_2555CJA_2556CJA_2569CJA_2565CJA_2570CJA_2552CJA_2567
BVIE269482 BCEP1808_0892BCEP1808_2410BCEP1808_2597BCEP1808_1520BCEP1808_2598BCEP1808_0895BCEP1808_0351
BTHA271848 BTH_I1562BTH_I1561BTH_I0762BTH_I2509BTH_I2936BTH_I1565BTH_I3047
BSP36773 BCEP18194_A4079BCEP18194_A4078BCEP18194_A5851BCEP18194_A4698BCEP18194_A5852BCEP18194_A4082BCEP18194_A3468
BPSE320373 BURPS668_2989BURPS668_1185BURPS668_0959BURPS668_1811BURPS668_3598BURPS668_2986BURPS668_3725
BPSE320372 BURPS1710B_A3332BURPS1710B_A1415BURPS1710B_A1173BURPS1710B_A2139BURPS1710B_A3897BURPS1710B_A3329BURPS1710B_A4048
BPSE272560 BPSL2603BPSL1109BPSL0898ABPSL1864BPSL3079BPSL2600BPSL3192
BPET94624 BPET1575BPET1574BPET2662BPET0933BPET2663BPET1587BPET4929
BPER257313 BP2472BP2473BP2756BP3444BP2757BP2470BP3637
BPAR257311 BPP3461BPP3462BPP2572BPP3538BPP2571BPP3459BPP0052
BMAL320389 BMA10247_1989BMA10247_1990BMA10247_2157BMA10247_0770BMA10247_3184BMA10247_1986BMA10247_3499
BMAL320388 BMASAVP1_A0791BMASAVP1_A1032BMASAVP1_A0575BMASAVP1_A1734BMASAVP1_A0574BMASAVP1_A0794BMASAVP1_A3148
BMAL243160 BMA_2121BMA_2122BMA_2280BMA_1251BMA_2791BMA_2118BMA_2611
BCEN331272 BCEN2424_2321BCEN2424_2519BCEN2424_1556BCEN2424_2520BCEN2424_0979BCEN2424_0369
BCEN331271 BCEN_1709BCEN_1908BCEN_1076BCEN_1909BCEN_0500BCEN_2738
BBRO257310 BB3910BB3911BB2017BB3973BB2016BB3908BB0052
BAMB398577 BAMMC406_0848BAMMC406_2240BAMMC406_2437BAMMC406_1478BAMMC406_2438BAMMC406_0851BAMMC406_0297
BAMB339670 BAMB_0836BAMB_2360BAMB_2567BAMB_1457BAMB_0408BAMB_0839BAMB_0288
ASP76114 EBA7039EBA7041EBD83EBA4891EBC12EBA7034
ASP62977 ACIAD2937ACIAD0891ACIAD1362ACIAD0889ACIAD2935ACIAD0472
ASP62928 AZO1366AZO1365AZO1133AZO2208AZO1134AZO1369AZO3396
ASAL382245 ASA_2437ASA_2438ASA_2447ASA_2443ASA_2448ASA_2435ASA_2445
AHYD196024 AHA_1866AHA_1865AHA_1856AHA_1860AHA_1855AHA_1868AHA_1858
AFER243159 AFE_2655AFE_2517AFE_2780AFE_2450AFE_2652AFE_2683
AEHR187272 MLG_1711MLG_1712MLG_1448MLG_1713MLG_1699MLG_1446
ABOR393595 ABO_1291ABO_1290ABO_1284ABO_1288ABO_1283ABO_1294ABO_1286
ABAU360910 BAV2694BAV2695BAV2091BAV2751BAV2092BAV2685BAV0055


Organism features enriched in list (features available for 152 out of the 160 orgs in the list)
Feature    Pvalue       Num occurrences in list  Total num occurrences  
Arrangment:Chains 0.0000206992
Arrangment:Pairs 0.001062642112
Disease:Bubonic_plague 0.000291766
Disease:Dysentery 0.000291766
Disease:Gastroenteritis 0.00014081013
Disease:Legionnaire's_disease 0.004486444
Disease:Meningitis_and_septicemia 0.004486444
Endospores:No 2.494e-828211
GC_Content_Range4:0-40 4.294e-276213
GC_Content_Range4:40-60 9.063e-1497224
GC_Content_Range4:60-100 0.004685949145
GC_Content_Range7:30-40 2.767e-186166
GC_Content_Range7:50-60 2.842e-1258107
GC_Content_Range7:60-70 0.000745049134
Genome_Size_Range5:0-2 3.993e-231155
Genome_Size_Range5:2-4 0.000163134197
Genome_Size_Range5:4-6 7.452e-2094184
Genome_Size_Range5:6-10 0.00025932347
Genome_Size_Range9:1-2 2.642e-181128
Genome_Size_Range9:2-3 0.000577718120
Genome_Size_Range9:4-5 6.849e-84796
Genome_Size_Range9:5-6 1.593e-94788
Genome_Size_Range9:6-8 0.00001332238
Gram_Stain:Gram_Neg 1.944e-26139333
Motility:No 1.600e-1012151
Motility:Yes 1.906e-13108267
Optimal_temp.:35-37 0.0056245813
Oxygen_Req:Anaerobic 2.007e-104102
Oxygen_Req:Facultative 1.877e-676201
Pathogenic_in:No 0.000016438226
Pathogenic_in:Plant 0.00012601115
Shape:Coccus 0.0000165782
Shape:Rod 4.290e-14128347
Shape:Spiral 0.0019681234
Temp._range:Mesophilic 0.0058786133473
Temp._range:Psychrophilic 4.653e-699
Temp._range:Thermophilic 0.0002352135



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ORGANISMS CONTAINING AT MOST 1 GENES FROM THE GROUP:

Total number of orgs: 151
Effective number of orgs (counting one per cluster within 468 clusters): 135

Organism list
Homologs in each organism in the list
Features enriched in organism list


Follow (ncbi) link, when present, to find the set of organism features for each organism
Org ID  Org Name  # genes in group found in org  
WPIP955 Wolbachia pipientis1
WPIP80849 Wolbachia endosymbiont of Brugia malayi1
UURE95667 Ureaplasma urealyticum serovar 130
UURE95664 Ureaplasma urealyticum serovar 100
UPAR505682 ncbi Ureaplasma parvum serovar 3 str. ATCC 278150
UMET351160 ncbi uncultured methanogenic archaeon RC-I0
TWHI218496 ncbi Tropheryma whipplei TW08/270
TWHI203267 ncbi Tropheryma whipplei Twist0
TVOL273116 ncbi Thermoplasma volcanium GSS10
TTHE300852 ncbi Thermus thermophilus HB80
TTHE262724 ncbi Thermus thermophilus HB270
TPEN368408 ncbi Thermofilum pendens Hrk 50
TPAL243276 ncbi Treponema pallidum pallidum Nichols1
TMAR243274 ncbi Thermotoga maritima MSB81
TKOD69014 ncbi Thermococcus kodakarensis KOD10
TACI273075 ncbi Thermoplasma acidophilum DSM 17280
STOK273063 ncbi Sulfolobus tokodaii 70
SSUI391295 ncbi Streptococcus suis 05ZYH331
SSP84588 ncbi Synechococcus sp. WH 81021
SSP64471 ncbi Synechococcus sp. CC93110
SSP1148 ncbi Synechocystis sp. PCC 68031
SSP1131 Synechococcus sp. CC96050
SSOL273057 ncbi Sulfolobus solfataricus P20
SRUB309807 ncbi Salinibacter ruber DSM 138551
SPYO286636 ncbi Streptococcus pyogenes MGAS103941
SPYO193567 ncbi Streptococcus pyogenes SSI-11
SMAR399550 ncbi Staphylothermus marinus F10
SELO269084 ncbi Synechococcus elongatus PCC 63011
SARE391037 ncbi Salinispora arenicola CNS-2051
SACI330779 ncbi Sulfolobus acidocaldarius DSM 6390
RMAS416276 ncbi Rickettsia massiliae MTU51
RALB246199 Ruminococcus albus 81
RAKA293614 ncbi Rickettsia akari Hartford1
PTOR263820 ncbi Picrophilus torridus DSM 97900
PSP117 Pirellula sp.1
PMOB403833 ncbi Petrotoga mobilis SJ951
PMAR93060 ncbi Prochlorococcus marinus MIT 92150
PMAR74547 ncbi Prochlorococcus marinus MIT 93130
PMAR74546 ncbi Prochlorococcus marinus MIT 93120
PMAR59920 ncbi Prochlorococcus marinus NATL2A0
PMAR167555 ncbi Prochlorococcus marinus NATL1A0
PMAR167546 ncbi Prochlorococcus marinus MIT 93010
PMAR167542 ncbi Prochlorococcus marinus MIT 95150
PMAR167540 Prochlorococcus marinus pastoris MED4ax0
PMAR167539 ncbi Prochlorococcus marinus marinus CCMP13750
PMAR146891 ncbi Prochlorococcus marinus AS96010
PLUT319225 ncbi Chlorobium luteolum DSM 2731
PISL384616 ncbi Pyrobaculum islandicum DSM 41840
PINT246198 Prevotella intermedia 171
PHOR70601 ncbi Pyrococcus horikoshii OT30
PGIN242619 ncbi Porphyromonas gingivalis W831
PFUR186497 ncbi Pyrococcus furiosus DSM 36380
PDIS435591 ncbi Parabacteroides distasonis ATCC 85031
PAST100379 Onion yellows phytoplasma0
PARS340102 ncbi Pyrobaculum arsenaticum DSM 135140
PAER178306 ncbi Pyrobaculum aerophilum IM20
PACN267747 ncbi Propionibacterium acnes KPA1712021
PABY272844 ncbi Pyrococcus abyssi GE50
OTSU357244 ncbi Orientia tsutsugamushi Boryong1
NSEN222891 ncbi Neorickettsia sennetsu Miyayama1
NPHA348780 ncbi Natronomonas pharaonis DSM 21600
MTHE349307 ncbi Methanosaeta thermophila PT0
MTHE187420 ncbi Methanothermobacter thermautotrophicus Delta H0
MSYN262723 ncbi Mycoplasma synoviae 530
MSTA339860 ncbi Methanosphaera stadtmanae DSM 30910
MSED399549 ncbi Metallosphaera sedula DSM 53480
MPUL272635 ncbi Mycoplasma pulmonis UAB CTIP0
MPNE272634 ncbi Mycoplasma pneumoniae M1290
MPEN272633 ncbi Mycoplasma penetrans HF-20
MMYC272632 ncbi Mycoplasma mycoides mycoides SC str. PG10
MMOB267748 ncbi Mycoplasma mobile 163K0
MMAZ192952 ncbi Methanosarcina mazei Go11
MMAR444158 ncbi Methanococcus maripaludis C60
MMAR426368 ncbi Methanococcus maripaludis C70
MMAR402880 ncbi Methanococcus maripaludis C50
MMAR368407 ncbi Methanoculleus marisnigri JR10
MMAR267377 ncbi Methanococcus maripaludis S20
MLAB410358 ncbi Methanocorpusculum labreanum Z0
MKAN190192 ncbi Methanopyrus kandleri AV190
MJAN243232 ncbi Methanocaldococcus jannaschii DSM 26610
MHYO295358 ncbi Mycoplasma hyopneumoniae 2320
MHYO262722 ncbi Mycoplasma hyopneumoniae 74480
MHYO262719 ncbi Mycoplasma hyopneumoniae J0
MHUN323259 ncbi Methanospirillum hungatei JF-10
MGEN243273 ncbi Mycoplasma genitalium G370
MFLO265311 ncbi Mesoplasma florum L10
MCAP340047 ncbi Mycoplasma capricolum capricolum ATCC 273430
MBUR259564 ncbi Methanococcoides burtonii DSM 62420
MBAR269797 ncbi Methanosarcina barkeri Fusaro0
MART243272 ncbi Mycoplasma arthritidis 158L3-10
MAEO419665 ncbi Methanococcus aeolicus Nankai-30
MACE188937 ncbi Methanosarcina acetivorans C2A0
LXYL281090 ncbi Leifsonia xyli xyli CTCB071
LREU557436 ncbi Lactobacillus reuteri DSM 200161
IHOS453591 ncbi Ignicoccus hospitalis KIN4/I0
HWAL362976 ncbi Haloquadratum walsbyi DSM 167900
HSP64091 ncbi Halobacterium sp. NRC-10
HSAL478009 ncbi Halobacterium salinarum R10
HPYL85963 ncbi Helicobacter pylori J991
HPYL357544 ncbi Helicobacter pylori HPAG11
HPY ncbi Helicobacter pylori 266951
HMUK485914 ncbi Halomicrobium mukohataei DSM 122860
HMAR272569 ncbi Haloarcula marismortui ATCC 430490
HHEP235279 ncbi Helicobacter hepaticus ATCC 514491
HBUT415426 ncbi Hyperthermus butylicus DSM 54560
HACI382638 ncbi Helicobacter acinonychis Sheeba1
FSUC59374 ncbi Fibrobacter succinogenes succinogenes S850
DSP255470 ncbi Dehalococcoides sp. CBDB10
DSP216389 ncbi Dehalococcoides sp. BAV10
DETH243164 ncbi Dehalococcoides ethenogenes 1950
CTRA471473 ncbi Chlamydia trachomatis L2b/UCH-1/proctitis0
CTRA471472 ncbi Chlamydia trachomatis 434/Bu0
CTEP194439 ncbi Chlorobium tepidum TLS1
CSUL444179 ncbi Candidatus Sulcia muelleri GWSS0
CPRO264201 ncbi Candidatus Protochlamydia amoebophila UWE250
CPNE182082 ncbi Chlamydophila pneumoniae TW-1830
CPNE138677 ncbi Chlamydophila pneumoniae J1380
CPNE115713 ncbi Chlamydophila pneumoniae CWL0290
CPNE115711 ncbi Chlamydophila pneumoniae AR390
CMUR243161 ncbi Chlamydia muridarum Nigg0
CMET456442 ncbi Candidatus Methanoregula boonei 6A80
CMAQ397948 ncbi Caldivirga maquilingensis IC-1670
CKOR374847 ncbi Candidatus Korarchaeum cryptofilum OPF80
CHUT269798 ncbi Cytophaga hutchinsonii ATCC 334061
CHOM360107 ncbi Campylobacter hominis ATCC BAA-3811
CFEL264202 ncbi Chlamydophila felis Fe/C-560
CCON360104 ncbi Campylobacter concisus 138261
CCHL340177 ncbi Chlorobium chlorochromatii CaD30
CCAV227941 ncbi Chlamydophila caviae GPIC0
CABO218497 ncbi Chlamydophila abortus S26/30
BXEN266265 ncbi Burkholderia xenovorans LB4001
BTUR314724 ncbi Borrelia turicatae 91E1351
BTHE226186 ncbi Bacteroides thetaiotaomicron VPI-54821
BLON206672 ncbi Bifidobacterium longum NCC27050
BHER314723 ncbi Borrelia hermsii DAH1
BGAR290434 ncbi Borrelia garinii PBi1
BFRA295405 ncbi Bacteroides fragilis YCH461
BFRA272559 ncbi Bacteroides fragilis NCTC 93431
BBUR224326 ncbi Borrelia burgdorferi B311
BAFZ390236 ncbi Borrelia afzelii PKo1
AYEL322098 ncbi Aster yellows witches-broom phytoplasma AYWB0
AURANTIMONAS Aurantimonas manganoxydans SI85-9A10
ASP1667 Arthrobacter sp.1
APHA212042 ncbi Anaplasma phagocytophilum HZ1
APER272557 ncbi Aeropyrum pernix K10
ANAE240017 Actinomyces oris MG11
AMAR234826 ncbi Anaplasma marginale St. Maries1
ALAI441768 ncbi Acholeplasma laidlawii PG-8A1
AFUL224325 ncbi Archaeoglobus fulgidus DSM 43040
AAUR290340 ncbi Arthrobacter aurescens TC11
AAEO224324 ncbi Aquifex aeolicus VF51


Names of the homologs of the genes in the group in each of these orgs
  G6465   G6464   G6463   EG11112   EG11111   EG10947   EG10504   
WPIP955 WD_0120
WPIP80849 WB_0981
UURE95667
UURE95664
UPAR505682
UMET351160
TWHI218496
TWHI203267
TVOL273116
TTHE300852
TTHE262724
TPEN368408
TPAL243276 TP_0999
TMAR243274 TM_1379
TKOD69014
TACI273075
STOK273063
SSUI391295 SSU05_0092
SSP84588 SYNW1894OR0706
SSP64471
SSP1148 SLL0869
SSP1131
SSOL273057
SRUB309807 SRU_0827
SPYO286636 M6_SPY1477
SPYO193567 SPS0350
SMAR399550
SELO269084 SYC0918_D
SARE391037 SARE_3353
SACI330779
RMAS416276 RMA_1298
RALB246199 GRAORF_3038
RAKA293614 A1C_06390
PTOR263820
PSP117 RB12137
PMOB403833 PMOB_0102
PMAR93060
PMAR74547
PMAR74546
PMAR59920
PMAR167555
PMAR167546
PMAR167542
PMAR167540
PMAR167539
PMAR146891
PLUT319225 PLUT_0456
PISL384616
PINT246198 PIN_A1043
PHOR70601
PGIN242619 PG_1916
PFUR186497
PDIS435591 BDI_2358
PAST100379
PARS340102
PAER178306
PACN267747 PPA2221
PABY272844
OTSU357244 OTBS_0779
NSEN222891 NSE_0650
NPHA348780
MTHE349307
MTHE187420
MSYN262723
MSTA339860
MSED399549
MPUL272635
MPNE272634
MPEN272633
MMYC272632
MMOB267748
MMAZ192952 MM0865
MMAR444158
MMAR426368
MMAR402880
MMAR368407
MMAR267377
MLAB410358
MKAN190192
MJAN243232
MHYO295358
MHYO262722
MHYO262719
MHUN323259
MGEN243273
MFLO265311
MCAP340047
MBUR259564
MBAR269797
MART243272
MAEO419665
MACE188937
LXYL281090 LXX20110
LREU557436 LREU_0097
IHOS453591
HWAL362976
HSP64091
HSAL478009
HPYL85963 JHP0028
HPYL357544 HPAG1_0030
HPY HP0032
HMUK485914
HMAR272569
HHEP235279 HH_1565
HBUT415426
HACI382638 HAC_0045
FSUC59374
DSP255470
DSP216389
DETH243164
CTRA471473
CTRA471472
CTEP194439 CT_0346
CSUL444179
CPRO264201
CPNE182082
CPNE138677
CPNE115713
CPNE115711
CMUR243161
CMET456442
CMAQ397948
CKOR374847
CHUT269798 CHU_3140
CHOM360107 CHAB381_1113
CFEL264202
CCON360104 CCC13826_0773
CCHL340177
CCAV227941
CABO218497
BXEN266265 BXE_B2951
BTUR314724 BT0169
BTHE226186 BT_2705
BLON206672
BHER314723 BH0169
BGAR290434 BG0168
BFRA295405 BF4159
BFRA272559 BF3981
BBUR224326 BB_0169
BAFZ390236 BAPKO_0171
AYEL322098
AURANTIMONAS
ASP1667 ARTH_0472
APHA212042 APH_0955
APER272557
ANAE240017 ANA_0050
AMAR234826 AM322
ALAI441768 ACL_0009
AFUL224325
AAUR290340 AAUR_1174
AAEO224324 AQ_298


Organism features enriched in list (features available for 138 out of the 151 orgs in the list)
Feature    Pvalue       Num occurrences in list  Total num occurrences  
Arrangment:Aggregates 0.000794379
Arrangment:Chains 0.0001593992
Arrangment:Pairs 7.623e-610112
Arrangment:Singles 0.002712981286
Disease:Pharyngitis 8.412e-688
Disease:bronchitis_and_pneumonitis 8.412e-688
Endospores:No 3.730e-877211
Endospores:Yes 5.130e-6153
GC_Content_Range4:0-40 0.003299763213
GC_Content_Range4:60-100 2.481e-615145
GC_Content_Range7:0-30 0.00143282047
GC_Content_Range7:40-50 0.000667441117
GC_Content_Range7:60-70 0.000025315134
Genome_Size_Range5:0-2 2.739e-2586155
Genome_Size_Range5:4-6 1.554e-1410184
Genome_Size_Range5:6-10 0.0002127247
Genome_Size_Range9:0-1 1.515e-92127
Genome_Size_Range9:1-2 8.977e-1565128
Genome_Size_Range9:3-4 0.0003262777
Genome_Size_Range9:4-5 1.781e-7596
Genome_Size_Range9:5-6 1.425e-6588
Genome_Size_Range9:6-8 0.0003022138
Gram_Stain:Gram_Neg 0.000087660333
Gram_Stain:Gram_Pos 5.622e-813150
Habitat:Aquatic 0.00010173691
Habitat:Multiple 7.729e-1311178
Habitat:Specialized 3.930e-62753
Habitat:Terrestrial 0.0090864231
Motility:Yes 0.004502751267
Optimal_temp.:- 0.008150650257
Optimal_temp.:37 0.000660638106
Optimal_temp.:85 0.003035844
Oxygen_Req:Aerobic 0.002138031185
Oxygen_Req:Anaerobic 1.366e-949102
Oxygen_Req:Facultative 3.036e-724201
Pathogenic_in:Human 0.003302838213
Salinity:Extreme_halophilic 0.000872867
Shape:Irregular_coccus 1.042e-111717
Shape:Oval 0.000702655
Shape:Rod 3.935e-1444347
Shape:Sphere 2.264e-81619
Temp._range:Hyperthermophilic 1.618e-91923
Temp._range:Mesophilic 0.000148497473



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ORGANISMS ENRICHED FOR GROUP:




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ORGANISMS DEPLETED FOR GROUP:




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PHYLOGENETIC PROFILE SIMILARITY WITH KNOWN PATHWAYS:

Pathways or complexes with absolute value of Pearson coefficient with respect to candidate larger than 0.4 are listed below
The candidate is assumed to exist in orgs listed in section List of organisms containing most genes from the group


Pathway or complex  # Orgs containing it  # of those orgs also containing candidate  Pearson Coeff  
AST-PWY (arginine degradation II (AST pathway))1201020.6632
GLYCOCAT-PWY (glycogen degradation I)2461470.6300
PWY0-1241 (ADP-L-glycero-β-D-manno-heptose biosynthesis)2181370.6241
COBALSYN-PWY (adenosylcobalamin salvage from cobinamide I)1951260.6015
PWY-5111 (CMP-KDO biosynthesis II (from D-arabinose 5-phosphate))3001580.5953
PWY-5918 (heme biosynthesis I)2721480.5789
PWY-4041 (γ-glutamyl cycle)2791490.5715
PWY4FS-7 (phosphatidylglycerol biosynthesis I (plastidic))2911510.5616
PWY0-1319 (CDP-diacylglycerol biosynthesis II)2961520.5590
PHOSLIPSYN-PWY (phospholipid biosynthesis I)2901500.5563
PWY-1269 (CMP-KDO biosynthesis I)3251590.5555
LIPA-CORESYN-PWY (Lipid A-core biosynthesis)1761130.5533
KDO-LIPASYN-PWY (KDO2-lipid A biosynthesis I)2251300.5524
HEME-BIOSYNTHESIS-II (heme biosynthesis from uroporphyrinogen-III I)2861480.5496
PWY-5755 (4-hydroxybenzoate biosynthesis II (bacteria and fungi))81710.5484
PWY-5386 (methylglyoxal degradation I)3051510.5341
GLUTATHIONESYN-PWY (glutathione biosynthesis)3391590.5307
NAGLIPASYN-PWY (lipid IVA biosynthesis)3481590.5152
3-HYDROXYPHENYLACETATE-DEGRADATION-PWY (4-hydroxyphenylacetate degradation)149980.5145
ECASYN-PWY (enterobacterial common antigen biosynthesis)1911120.5016
PWY-5148 (acyl-CoA hydrolysis)2271240.5016
PWY-5913 (TCA cycle variation IV)3011450.4977
TYRFUMCAT-PWY (tyrosine degradation I)1841090.4973
GLUCONSUPER-PWY (D-gluconate degradation)2291240.4968
LIPASYN-PWY (phospholipases)2121180.4928
PWY-5857 (ubiquinone-10 biosynthesis (prokaryotic))1831080.4921
ENTNER-DOUDOROFF-PWY (Entner-Doudoroff pathway I)2491280.4804
GLYCOLYSIS-E-D (superpathway of glycolysis and Entner-Doudoroff)2491280.4804
PWY0-981 (taurine degradation IV)106760.4769
PWY-5855 (ubiquinone-7 biosynthesis (prokaryotic))1911080.4697
GLUCARDEG-PWY (D-glucarate degradation I)152930.4616
GALACTITOLCAT-PWY (galactitol degradation)73590.4598
PWY-3162 (tryptophan degradation V (side chain pathway))94680.4502
PWY0-541 (cyclopropane fatty acid (CFA) biosynthesis)3001380.4482
P601-PWY (D-camphor degradation)95680.4456
PWY0-1182 (trehalose degradation II (trehalase))70560.4424
PWY0-1329 (succinate to cytochrome bo oxidase electron transfer)96680.4411
PWY0-845 (superpathway of pyridoxal 5'-phosphate biosynthesis and salvage)3291440.4380
PWY-5856 (ubiquinone-9 biosynthesis (prokaryotic))2551240.4372
UBISYN-PWY (ubiquinol-8 biosynthesis (prokaryotic))3981590.4343
SULFATE-CYS-PWY (superpathway of sulfate assimilation and cysteine biosynthesis)3651510.4271
CHOLINE-BETAINE-ANA-PWY (choline degradation I)135820.4221
BETSYN-PWY (glycine betaine biosynthesis I (Gram-negative bacteria))138830.4208
REDCITCYC (TCA cycle variation II)174960.4202
POLYISOPRENSYN-PWY (polyisoprenoid biosynthesis (E. coli))116740.4173
PWY0-1299 (arginine dependent acid resistance)1991040.4168
DAPLYSINESYN-PWY (lysine biosynthesis I)3421440.4147
GLUCARGALACTSUPER-PWY (superpathway of D-glucarate and D-galactarate degradation)135810.4132
P344-PWY (acrylonitrile degradation)2101070.4125
P184-PWY (protocatechuate degradation I (meta-cleavage pathway))94640.4091
PWY0-1353 (succinate to cytochrome bd oxidase electron transfer)178960.4090
PYRIDOXSYN-PWY (pyridoxal 5'-phosphate biosynthesis I)4221600.4057
PWY-561 (superpathway of glyoxylate cycle)162900.4053
PWY0-1335 (NADH to cytochrome bo oxidase electron transfer)112710.4041
LPSSYN-PWY (superpathway of lipopolysaccharide biosynthesis)91620.4019
PWY-5340 (sulfate activation for sulfonation)3851520.4017
GLYOXYLATE-BYPASS (glyoxylate cycle)169920.4016
PWY-6134 (tyrosine biosynthesis IV)89610.4005



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PAIRWISE GENOME CONTEXT SCORE MATRIX:

  G6464   G6463   EG11112   EG11111   EG10947   EG10504   
G64650.9998210.9990550.9992530.9988280.9996720.999101
G64640.9987110.9991970.9986630.9992880.998717
G64630.9995210.9997020.9987530.999434
EG111120.9992210.9989890.999431
EG111110.9985560.999145
EG109470.998891
EG10504



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PAIRWISE BLAST SCORES:

  G6465   G6464   G6463   EG11112   EG11111   EG10947   EG10504   
G64650.0f0------
G6464-0.0f0-----
G6463--0.0f0----
EG11112---0.0f0---
EG11111----0.0f0--
EG10947-----0.0f0-
EG10504------0.0f0



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PATHWAYS OR PROTEIN COMPLEX MATCHES IN TARGET ORG:

For each case, all genes involved in the pathway or complex are listed. For each gene we list: a tag indicating whether the gene is part of the candidate list or not, the average and the minimum scores of the gene to the candidate list, the gene name, and its product names.



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GENOME CONTEXT INFORMATION:

Each row corresponds to a replicon in an organism, each column to a gene in the candidate. The second column indicates whether the organims was included in the list used to compute the genome context scores or not. Some organisms are not included because they are phylogenetically too similar to others already in the list.
The number in the matrix indicate the position of the homolog of the gene in the replicon. All numbers are relative to the smaller one, which is assigned a position of zero. Two columns with the same number indicate that the two genes matched the same gene in that organism.

Genome browser links for gene clusters

The links below opens a genome browser BioCyc page for each cluster of genes in the target genome. These pages shows the central gene of the cluster in the target genome and its best homolog in the reference genomes, for the genomes that contain homologs for at least 75% of the genes in the group. Only one genome per phylogenetic cluster of organisms is shown, to keep the list smaller.

EG10504 EG11111 EG11112 G6463 (centered at EG10504)
EG10947 G6464 G6465 (centered at G6465)


ORG:REPLICON:CIRC?\GENE  IN REF LIST  G6465   G6464   G6463   EG11112   EG11111   EG10947   EG10504   
188/623370/623279/623271/623216/623405/623410/623
AAEO224324:0:Tyes-----0-
AAUR290340:2:Tyes----0--
AAVE397945:0:Tyes3143151330-646-
ABAC204669:0:Tyes11901372--38230864
ABAU360910:0:Tyes2641264220362701203726340
ABOR393595:0:Tyes87150113
ABUT367737:0:Tyes-648240---
ACAU438753:0:Tyes-015171128-1665-
ACEL351607:0:Tyes--1360---0
ACRY349163:8:Tyes-02175301-5802323
ADEH290397:0:Tyes--02199--
AEHR187272:0:Tyes2622632264-2500
AFER243159:0:Tyes201-663250198228
AHYD196024:0:Tyes1110150133
ALAI441768:0:Tyes-----0-
AMAR234826:0:Tyes-0-----
AMAR329726:9:Tyes---3001-02627
AMET293826:0:Tyes-2587--155604386
ANAE240017:0:Tyes------0
AORE350688:0:Tyes-1526--20170509
APHA212042:0:Tyes-0-----
APLE416269:0:Tyes0142---393750
APLE434271:0:Tno099---361724
ASAL382245:5:Tyes2312813010
ASP1667:3:Tyes----0--
ASP232721:2:Tyes150115020147-1560-
ASP62928:0:Tyes2402390109712432294
ASP62977:0:Tyes2300401853399-22980
ASP76114:2:Tyes14781479025321475-
AVAR240292:3:Tyes---1032--0
BABO262698:1:Tno-94826119-0-
BAFZ390236:2:Fyes------0
BAMB339670:3:Tno5622132234312021205650
BAMB398577:3:Tno55019712171119521725530
BAMY326423:0:Tyes-2671---0148
BANT260799:0:Tno-4620---0127
BANT261594:2:Tno-4544---0118
BANT568206:2:Tyes-4789---0116
BANT592021:2:Tno-4777---0118
BAPH198804:0:Tyes----17002
BAPH372461:0:Tyes----11202
BBAC264462:0:Tyes--1101839-0-
BBAC360095:0:Tyes-0457--404-
BBRO257310:0:Tyes3886388719843952198338840
BBUR224326:21:Fno------0
BCAN483179:1:Tno-100228419-0-
BCEN331271:2:Tno-12311433593143402267
BCEN331272:3:Tyes-19492146118521476090
BCER226900:1:Tyes-4579---0134
BCER288681:0:Tno-4486---0124
BCER315749:1:Tyes-3178---0113
BCER405917:1:Tyes-4572---0119
BCER572264:1:Tno-4609---0116
BCIC186490:0:Tyes5657--05559
BCLA66692:0:Tyes-2824---0179
BFRA272559:1:Tyes------0
BFRA295405:0:Tno------0
BGAR290434:2:Fyes------0
BHAL272558:0:Tyes-2450---0156
BHEN283166:0:Tyes-89555--0-
BHER314723:0:Fyes------0
BJAP224911:0:Fyes-045683688-4157-
BLIC279010:0:Tyes-3030--5430140
BMAL243160:1:Tno769770914013867661219
BMAL320388:1:Tno2164481113502192513
BMAL320389:1:Tyes1187118813540236311842671
BMEL224914:1:Tno-0671927-946-
BMEL359391:1:Tno-90825319-0-
BOVI236:1:Tyes-839227--0-
BPAR257311:0:Tno3248324924213328242032460
BPER257313:0:Tyes23264-26501069
BPET94624:0:Tyes6436421734017356554035
BPSE272560:1:Tyes17192110961219617162310
BPSE320372:1:Tno20392400951259420362745
BPSE320373:1:Tno19462210823253919432665
BPUM315750:0:Tyes-2515---4020
BQUI283165:0:Tyes-655198--0-
BSP107806:2:Tyes----17502
BSP36773:2:Tyes6166152429125324306190
BSP376:0:Tyes-041003088-3613-
BSUB:0:Tyes-3159---0152
BSUI204722:1:Tyes-97327920-0-
BSUI470137:1:Tno-787286--0-
BTHA271848:1:Tno7897880171321277922235
BTHE226186:0:Tyes------0
BTHU281309:1:Tno-4364---0113
BTHU412694:1:Tno-4112---0126
BTRI382640:1:Tyes-121654--0-
BTUR314724:0:Fyes------0
BVIE269482:7:Tyes53920452228116322295420
BWEI315730:4:Tyes-4371--346126480
BXEN266265:1:Tyes----0--
CACE272562:1:Tyes-18121823-81203118
CAULO:0:Tyes-18515960-118-
CBEI290402:0:Tyes-103039002359--0
CBLO203907:0:Tyes12---04
CBLO291272:0:Tno12--6604
CBOT36826:1:Tno-2359---03405
CBOT441770:0:Tyes-2169---03360
CBOT441771:0:Tno-2146---03226
CBOT441772:1:Tno-2323---03431
CBOT498213:1:Tno-2309---03458
CBOT508765:1:Tyes-1202---0220
CBOT515621:2:Tyes-2520---03602
CBOT536232:0:Tno-2553---03711
CBUR227377:1:Tyes23---07
CBUR360115:1:Tno23---06
CBUR434922:2:Tno23---06
CCON360104:2:Tyes-----0-
CCUR360105:0:Tyes-463---0-
CDES477974:0:Tyes-785---0241
CDIF272563:1:Tyes-1344--1375084
CDIP257309:0:Tyes-1131--0-218
CEFF196164:0:Fyes-1321----0
CFET360106:0:Tyes-02623-647-
CGLU196627:0:Tyes-1381----0
CHOM360107:1:Tyes--0----
CHUT269798:0:Tyes------0
CHYD246194:0:Tyes-0---14771093
CJAP155077:0:Tyes34171318015
CJEI306537:0:Tyes-0--858-656
CJEJ192222:0:Tyes-0226228--694
CJEJ195099:0:Tno--02--496
CJEJ354242:2:Tyes-0222224--665
CJEJ360109:0:Tyes--20--1250
CJEJ407148:0:Tno-0236238--683
CKLU431943:1:Tyes-13842271--0201
CMIC31964:2:Tyes----1242-0
CMIC443906:2:Tyes----0-999
CNOV386415:0:Tyes-----20620
CPEL335992:0:Tyes-0---656-
CPER195102:1:Tyes-1700---02458
CPER195103:0:Tno-1879---02586
CPER289380:3:Tyes-1596---02274
CPHY357809:0:Tyes-2180--0-3058
CPSY167879:0:Tyes341288129010
CRUT413404:0:Tyes-0811--902753
CSAL290398:0:Tyes7817827877830662785
CSP501479:8:Fyes--0260-1389-
CSP78:2:Tyes-24745840-564-
CTEP194439:0:Tyes---0---
CTET212717:0:Tyes-1117---0-
CVES412965:0:Tyes-0---823696
CVIO243365:0:Tyes24411182346430234502859
DARO159087:0:Tyes970969277687427759740
DDES207559:0:Tyes-178519321930-03629
DGEO319795:1:Tyes--7590---
DHAF138119:0:Tyes-2006---0501
DNOD246195:0:Tyes10172196-561690
DOLE96561:0:Tyes-186817641762-20320
DPSY177439:2:Tyes-2200104674905269
DRAD243230:3:Tyes--01108---
DRED349161:0:Tyes-1940---0241
DSHI398580:5:Tyes-0-1356-1837-
DVUL882:1:Tyes-164615811583-2230
ECAN269484:0:Tyes-0---241-
ECAR218491:0:Tyes231381509
ECHA205920:0:Tyes-290---0-
ECOL199310:0:Tno1110150134
ECOL316407:0:Tno1110150134
ECOL331111:6:Tno1211140143
ECOL362663:0:Tno1110150134
ECOL364106:1:Tno212021502314
ECOL405955:2:Tyes1615010-18-
ECOL409438:6:Tyes1211160145
ECOL413997:0:Tno1110150134
ECOL439855:4:Tno2350951010
ECOL469008:0:Tno231281309
ECOL481805:0:Tno231281309
ECOL585034:0:Tno1211160145
ECOL585035:0:Tno16151100189
ECOL585055:0:Tno1110150134
ECOL585056:2:Tno1211160145
ECOL585057:0:Tno25151017011
ECOL585397:0:Tno181711202011
ECOL83334:0:Tno1110150134
ECOLI:0:Tno1110150134
ECOO157:0:Tno11711611110119110
EFAE226185:3:Tyes----50528740
EFER585054:1:Tyes1110150134
ELIT314225:0:Tyes-228019442132-0-
ERUM254945:0:Tyes-0---275-
ERUM302409:0:Tno-0---270-
ESP42895:1:Tyes171611101910
FALN326424:0:Tyes--85852290-479
FJOH376686:0:Tyes--19310---
FMAG334413:1:Tyes-----079
FNOD381764:0:Tyes----6194080
FNUC190304:0:Tyes-----01177
FPHI484022:1:Tyes365364---01644
FRANT:0:Tno623622---3380
FSP106370:0:Tyes--61234800-353
FSP1855:0:Tyes--458705502--
FTUL351581:0:Tno413412---2250
FTUL393011:0:Tno349348---1850
FTUL393115:0:Tyes607606---3300
FTUL401614:0:Tyes01---351548
FTUL418136:0:Tno01---1015515
FTUL458234:0:Tno370369---2030
GBET391165:0:Tyes-1098619926-2220
GFOR411154:0:Tyes---224--0
GKAU235909:1:Tyes-2894---0135
GMET269799:1:Tyes-0--90231701478
GOXY290633:5:Tyes-19501040-1142394
GSUL243231:0:Tyes-3059--54001702
GTHE420246:1:Tyes-1109---0115
GURA351605:0:Tyes-4087--371101855
GVIO251221:0:Tyes--337627-3070
HACI382638:1:Tyes--0----
HARS204773:0:Tyes1013511347135242021
HAUR316274:2:Tyes--10---
HCHE349521:0:Tyes9392160963
HDUC233412:0:Tyes763971---6840
HHAL349124:0:Tyes2495-07
HHEP235279:0:Tyes--0----
HINF281310:0:Tyes11421141--13570441
HINF374930:0:Tyes932933--7954350
HINF71421:0:Tno14451446--12890421
HMOD498761:0:Tyes-1207---0278
HNEP81032:0:Tyes-246901201-886321
HPY:0:Tno--0----
HPYL357544:1:Tyes--0----
HPYL85963:0:Tno--0----
HSOM205914:1:Tyes107481--1493700
HSOM228400:0:Tno9180--9671198755
ILOI283942:0:Tyes3412813010
JSP290400:1:Tyes-034972312-645-
JSP375286:0:Tyes1013821378138332261
KPNE272620:2:Tyes1211150143
KRAD266940:2:Fyes---19991615-0
LACI272621:0:Tyes-371----0
LBIF355278:2:Tyes--01281--92
LBIF456481:2:Tno--01340---
LBOR355276:1:Tyes--12130--401
LBOR355277:1:Tno--16100--2259
LBRE387344:2:Tyes-----340
LCAS321967:1:Tyes-----0623
LCHO395495:0:Tyes6362973130397203262
LDEL321956:0:Tyes-----11370
LDEL390333:0:Tyes-----10930
LGAS324831:0:Tyes-----11990
LHEL405566:0:Tyes-335----0
LINN272626:1:Tno-0---12961166
LINT189518:1:Tyes--20120--658
LINT267671:1:Tno--16920--2705
LINT363253:3:Tyes01549551-49-
LJOH257314:0:Tyes-----12710
LLAC272622:5:Tyes----015952076
LLAC272623:0:Tyes----015441904
LMES203120:1:Tyes-422--1604-0
LMON169963:0:Tno-0---11991063
LMON265669:0:Tyes-0---1096945
LPLA220668:0:Tyes-----0484
LPNE272624:0:Tno1336133739013390871341
LPNE297245:1:Fno1248124938212510821253
LPNE297246:1:Fyes1232123338412350821237
LPNE400673:0:Tno0112483167715935
LREU557436:0:Tyes-----0-
LSAK314315:0:Tyes----01059988
LSPH444177:1:Tyes-----04477
LWEL386043:0:Tyes-0---1073938
LXYL281090:0:Tyes------0
MABS561007:1:Tyes-2598--0-3299
MAER449447:0:Tyes---3180-0-
MAQU351348:2:Tyes23209-2100208
MAVI243243:0:Tyes-2754--0-3507
MBOV233413:0:Tno-0--907-726
MBOV410289:0:Tno-0--941-761
MCAP243233:0:Tyes8308892-26590
MEXT419610:0:Tyes-293237040-3132-
MFLA265072:0:Tyes82282120877318368260
MGIL350054:3:Tyes-2626--0-3605
MLEP272631:0:Tyes-472--0-1098
MLOT266835:2:Tyes-31463790-707-
MMAG342108:0:Tyes-011062724-25053323
MMAR394221:0:Tyes-1669210-642-
MMAZ192952:0:Tyes-----0-
MPET420662:1:Tyes101337350133815672296
MSME246196:0:Tyes-1163--4597-0
MSP164756:1:Tno-1013--1191-0
MSP164757:0:Tno-959--1189-0
MSP189918:2:Tyes-1031--1210-0
MSP266779:3:Tyes-18670348-436-
MSP400668:0:Tyes34961007
MSP409:2:Tyes-255903073-4181-
MSUC221988:0:Tyes822824--4578200
MTBCDC:0:Tno-0--977-773
MTBRV:0:Tno-0--903-716
MTHE264732:0:Tyes-1025---02357
MTUB336982:0:Tno-0--914-736
MTUB419947:0:Tyes-0--927-742
MVAN350058:0:Tyes-1337--0-390
MXAN246197:0:Tyes-76651746210-2552
NARO279238:0:Tyes-064393-418629
NEUR228410:0:Tyes8868851574207415730250
NEUT335283:2:Tyes21862185175538017540308
NFAR247156:2:Tyes-3541--0-477
NGON242231:0:Tyes0597194143919510271481
NHAM323097:2:Tyes-022522026-1639-
NMEN122586:0:Tno44411096554365614650
NMEN122587:0:Tyes73313699340935179145
NMEN272831:0:Tno3759775754257612740
NMEN374833:0:Tno0650223135422410151401
NMUL323848:3:Tyes202055251220544611
NOCE323261:1:Tyes1020432214-6792216
NSEN222891:0:Tyes-0-----
NSP103690:6:Tyes---0--236
NSP35761:1:Tyes---04114-3725
NSP387092:0:Tyes-607143145-11630
NWIN323098:0:Tyes-016331696-1715-
OANT439375:5:Tyes-010941355-1422-
OCAR504832:0:Tyes-014121621-1910-
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