CANDIDATE ID: 309

CANDIDATE ID: 309

NUMBER OF GENES: 7
AVERAGE SCORE:    9.9911924e-1 (range=[0.0,1.0])
AVERAGE MINIMUM BLAST P-VAL:    1.0000000e+0

Gene List
List of organisms containing most genes from the group
    Phylogenetic tree highlighting these organisms (opens new page)
List of organisms containing very few or no genes from the group
List of organisms enriched for group
List of organisms depleted for group
Phylogenetic profile similarity with known pathways
Pairwise genome context scores
Pairwise Blast scores
Pathway or protein complex matches in target organism
Genome context matrix
    Genes and their orthologs in genome browser BioCyc pages



GENE LIST:

- G6465 (lolA) (b0891)
   Products of gene:
     - G6465-MONOMER (periplasmic chaperone, effects translocation of lipoproteins from inner membrane to outer)

- G6464 (ftsK) (b0890)
   Products of gene:
     - G6464-MONOMER (essential cell division protein FtsK)
     - CPLX0-3959 (Xer site-specific recombination system)

- EG11112 (aat) (b0885)
   Products of gene:
     - EG11112-MONOMER (leucyl, phenylalanyl-tRNA-protein transferase)
       Reactions:
        L-leucyl-tRNAleu + a protein  =  L-leucyl-protein + a tRNA

- EG11111 (cspD) (b0880)
   Products of gene:
     - EG11111-MONOMER (DNA replication inhibitor)
     - CPLX0-3301 (DNA replication inhibitor)

- EG11032 (trxB) (b0888)
   Products of gene:
     - THIOREDOXIN-REDUCT-NADPH-MONOMER (thioredoxin reductase monomer)
     - THIOREDOXIN-REDUCT-NADPH-CPLX (thioredoxin reductase)
       Reactions:
        an oxidized thioredoxin + NADPH + H+  ->  a reduced thioredoxin + NADP+
         In pathways
         THIOREDOX-PWY (thioredoxin pathway)

- EG10947 (serS) (b0893)
   Products of gene:
     - SERS-MONOMER (seryl-tRNA synthetase)
     - SERS-CPLX (seryl-tRNA synthetase)
       Reactions:
        tRNAsec + L-serine + ATP  ->  L-seryl-tRNAsec + diphosphate + AMP
         In pathways
         PWY0-901 (selenocysteine biosynthesis I (bacteria))
         PWY-6281 (PWY-6281)
        tRNAser + L-serine + ATP  ->  L-seryl-tRNAser + diphosphate + AMP
         In pathways
         TRNA-CHARGING-PWY (tRNA charging pathway)

- EG10504 (infA) (bypA1)
   Products of gene:
     - EG10504-MONOMER (protein chain initiation factor IF-1)



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ORGANISMS CONTAINING AT LEAST 6 GENES FROM THE GROUP:

Total number of orgs: 169
Effective number of orgs (counting one per cluster within 468 clusters): 107

Organism list
Homologs in each organism in the list
Features enriched in organism list


Follow (ncbi) link, when present, to find the set of organism features for each organism
Org ID  Org Name  # genes in group found in org  
YPSE349747 ncbi Yersinia pseudotuberculosis IP 317587
YPSE273123 ncbi Yersinia pseudotuberculosis IP 329537
YPES386656 ncbi Yersinia pestis Pestoides F7
YPES377628 ncbi Yersinia pestis Nepal5167
YPES360102 ncbi Yersinia pestis Antiqua7
YPES349746 ncbi Yersinia pestis Angola7
YPES214092 ncbi Yersinia pestis CO927
YPES187410 ncbi Yersinia pestis KIM 106
YENT393305 ncbi Yersinia enterocolitica enterocolitica 80817
XORY360094 ncbi Xanthomonas oryzae pv. oryzae PXO99A7
XORY342109 ncbi Xanthomonas oryzae pv. oryzae MAFF 3110187
XORY291331 ncbi Xanthomonas oryzae pv. oryzae KACC103317
XFAS405440 ncbi Xylella fastidiosa M126
XFAS183190 ncbi Xylella fastidiosa Temecula16
XFAS160492 ncbi Xylella fastidiosa 9a5c7
XCAM487884 Xanthomonas campestris pv. paulliniae7
XCAM316273 ncbi Xanthomonas campestris pv. vesicatoria str. 85-107
XCAM314565 ncbi Xanthomonas campestris pv. campestris str. 80047
XCAM190485 ncbi Xanthomonas campestris pv. campestris str. ATCC 339137
XAXO190486 ncbi Xanthomonas axonopodis pv. citri str. 3067
VVUL216895 ncbi Vibrio vulnificus CMCP67
VVUL196600 ncbi Vibrio vulnificus YJ0166
VPAR223926 ncbi Vibrio parahaemolyticus RIMD 22106337
VFIS312309 ncbi Vibrio fischeri ES1147
VCHO345073 ncbi Vibrio cholerae O3957
VCHO ncbi Vibrio cholerae O1 biovar El Tor str. N169617
TTUR377629 ncbi Teredinibacter turnerae T79017
TDEN292415 ncbi Thiobacillus denitrificans ATCC 252597
TCRU317025 ncbi Thiomicrospira crunogena XCL-26
STYP99287 ncbi Salmonella enterica enterica serovar Typhimurium str. LT27
SSP94122 ncbi Shewanella sp. ANA-37
SSON300269 ncbi Shigella sonnei Ss0467
SSED425104 ncbi Shewanella sediminis HAW-EB37
SPRO399741 ncbi Serratia proteamaculans 5687
SPEA398579 ncbi Shewanella pealeana ATCC 7003457
SONE211586 ncbi Shewanella oneidensis MR-17
SLOI323850 ncbi Shewanella loihica PV-47
SHIGELLA ncbi Shigella flexneri 2a str. 2457T7
SHAL458817 ncbi Shewanella halifaxensis HAW-EB47
SGLO343509 ncbi Sodalis glossinidius morsitans6
SFLE373384 ncbi Shigella flexneri 5 str. 84017
SFLE198214 ncbi Shigella flexneri 2a str. 3017
SENT454169 ncbi Salmonella enterica enterica serovar Heidelberg str. SL4767
SENT321314 ncbi Salmonella enterica enterica serovar Choleraesuis str. SC-B677
SENT295319 ncbi Salmonella enterica enterica serovar Paratyphi A str. ATCC 91507
SENT220341 ncbi Salmonella enterica enterica serovar Typhi str. CT187
SENT209261 ncbi Salmonella enterica enterica serovar Typhi str. Ty27
SDYS300267 ncbi Shigella dysenteriae Sd1977
SDEN318161 ncbi Shewanella denitrificans OS2177
SDEG203122 ncbi Saccharophagus degradans 2-407
SBOY300268 ncbi Shigella boydii Sb2277
SBAL402882 ncbi Shewanella baltica OS1857
SBAL399599 ncbi Shewanella baltica OS1957
RSOL267608 ncbi Ralstonia solanacearum GMI10007
RMET266264 ncbi Ralstonia metallidurans CH347
RFER338969 ncbi Rhodoferax ferrireducens T1186
REUT381666 ncbi Ralstonia eutropha H167
REUT264198 ncbi Ralstonia eutropha JMP1346
PSYR223283 ncbi Pseudomonas syringae pv. tomato str. DC30007
PSYR205918 ncbi Pseudomonas syringae pv. syringae B728a7
PSTU379731 ncbi Pseudomonas stutzeri A15017
PSP56811 Psychrobacter sp.7
PSP312153 ncbi Polynucleobacter necessarius asymbioticus QLW-P1DMWA-16
PSP296591 ncbi Polaromonas sp. JS6666
PPUT76869 ncbi Pseudomonas putida GB-17
PPUT351746 ncbi Pseudomonas putida F17
PPUT160488 ncbi Pseudomonas putida KT24407
PPRO298386 ncbi Photobacterium profundum SS97
PMUL272843 ncbi Pasteurella multocida multocida Pm706
PMEN399739 ncbi Pseudomonas mendocina ymp7
PLUM243265 ncbi Photorhabdus luminescens laumondii TTO17
PING357804 ncbi Psychromonas ingrahamii 376
PHAL326442 ncbi Pseudoalteromonas haloplanktis TAC1257
PFLU220664 ncbi Pseudomonas fluorescens Pf-57
PFLU216595 ncbi Pseudomonas fluorescens SBW257
PFLU205922 ncbi Pseudomonas fluorescens Pf0-17
PENT384676 ncbi Pseudomonas entomophila L487
PCRY335284 ncbi Psychrobacter cryohalolentis K57
PATL342610 ncbi Pseudoalteromonas atlantica T6c7
PARC259536 ncbi Psychrobacter arcticus 273-47
PAER208964 ncbi Pseudomonas aeruginosa PAO17
PAER208963 ncbi Pseudomonas aeruginosa UCBPP-PA147
NOCE323261 ncbi Nitrosococcus oceani ATCC 197076
NMUL323848 ncbi Nitrosospira multiformis ATCC 251967
NMEN374833 ncbi Neisseria meningitidis 0534427
NMEN272831 ncbi Neisseria meningitidis FAM187
NMEN122587 ncbi Neisseria meningitidis Z24917
NMEN122586 ncbi Neisseria meningitidis MC587
NGON242231 ncbi Neisseria gonorrhoeae FA 10907
NEUT335283 ncbi Nitrosomonas eutropha C917
NEUR228410 ncbi Nitrosomonas europaea ATCC 197187
MSUC221988 ncbi Mannheimia succiniciproducens MBEL55E6
MSP400668 ncbi Marinomonas sp. MWYL17
MPET420662 ncbi Methylibium petroleiphilum PM17
MFLA265072 ncbi Methylobacillus flagellatus KT7
MCAP243233 ncbi Methylococcus capsulatus Bath6
MAQU351348 ncbi Marinobacter aquaeolei VT86
LPNE400673 ncbi Legionella pneumophila Corby7
LPNE297246 ncbi Legionella pneumophila Paris7
LPNE297245 ncbi Legionella pneumophila Lens7
LPNE272624 ncbi Legionella pneumophila pneumophila Philadelphia 17
LCHO395495 ncbi Leptothrix cholodnii SP-67
KPNE272620 ncbi Klebsiella pneumoniae pneumoniae MGH 785787
JSP375286 ncbi Janthinobacterium sp. Marseille7
ILOI283942 ncbi Idiomarina loihiensis L2TR7
HSOM228400 ncbi Haemophilus somnus 23366
HSOM205914 ncbi Haemophilus somnus 129PT6
HINF71421 ncbi Haemophilus influenzae Rd KW206
HINF374930 ncbi Haemophilus influenzae PittEE6
HINF281310 ncbi Haemophilus influenzae 86-028NP6
HHAL349124 ncbi Halorhodospira halophila SL16
HCHE349521 ncbi Hahella chejuensis KCTC 23967
HARS204773 ncbi Herminiimonas arsenicoxydans7
ESP42895 Enterobacter sp.7
EFER585054 ncbi Escherichia fergusonii ATCC 354697
ECOO157 ncbi Escherichia coli O157:H7 EDL9337
ECOL83334 Escherichia coli O157:H77
ECOL585397 ncbi Escherichia coli ED1a7
ECOL585057 ncbi Escherichia coli IAI397
ECOL585056 ncbi Escherichia coli UMN0267
ECOL585055 ncbi Escherichia coli 559897
ECOL585035 ncbi Escherichia coli S887
ECOL585034 ncbi Escherichia coli IAI17
ECOL481805 ncbi Escherichia coli ATCC 87397
ECOL469008 ncbi Escherichia coli BL21(DE3)7
ECOL439855 ncbi Escherichia coli SMS-3-57
ECOL413997 ncbi Escherichia coli B str. REL6067
ECOL409438 ncbi Escherichia coli SE117
ECOL364106 ncbi Escherichia coli UTI897
ECOL362663 ncbi Escherichia coli 5367
ECOL331111 ncbi Escherichia coli E24377A7
ECOL316407 ncbi Escherichia coli K-12 substr. W31107
ECOL199310 ncbi Escherichia coli CFT0737
ECAR218491 ncbi Pectobacterium atrosepticum SCRI10437
DNOD246195 ncbi Dichelobacter nodosus VCS1703A6
DARO159087 ncbi Dechloromonas aromatica RCB7
CVIO243365 ncbi Chromobacterium violaceum ATCC 124727
CSAL290398 ncbi Chromohalobacter salexigens DSM 30437
CPSY167879 ncbi Colwellia psychrerythraea 34H7
CJAP155077 Cellvibrio japonicus7
CBLO291272 ncbi Candidatus Blochmannia pennsylvanicus BPEN6
BVIE269482 ncbi Burkholderia vietnamiensis G47
BTHA271848 ncbi Burkholderia thailandensis E2647
BSP36773 Burkholderia sp.7
BPSE320373 ncbi Burkholderia pseudomallei 6687
BPSE320372 ncbi Burkholderia pseudomallei 1710b7
BPSE272560 ncbi Burkholderia pseudomallei K962437
BPET94624 Bordetella petrii7
BPER257313 ncbi Bordetella pertussis Tohama I7
BPAR257311 ncbi Bordetella parapertussis 128227
BMAL320389 ncbi Burkholderia mallei NCTC 102477
BMAL320388 ncbi Burkholderia mallei SAVP17
BMAL243160 ncbi Burkholderia mallei ATCC 233447
BCIC186490 Candidatus Baumannia cicadellinicola6
BCEN331272 ncbi Burkholderia cenocepacia HI24246
BCEN331271 ncbi Burkholderia cenocepacia AU 10546
BBRO257310 ncbi Bordetella bronchiseptica RB507
BAMB398577 ncbi Burkholderia ambifaria MC40-67
BAMB339670 ncbi Burkholderia ambifaria AMMD7
ASP76114 ncbi Aromatoleum aromaticum EbN16
ASP62977 ncbi Acinetobacter sp. ADP16
ASP62928 ncbi Azoarcus sp. BH727
ASAL382245 ncbi Aeromonas salmonicida salmonicida A4497
AHYD196024 Aeromonas hydrophila dhakensis7
AFER243159 ncbi Acidithiobacillus ferrooxidans ATCC 232706
AEHR187272 ncbi Alkalilimnicola ehrlichii MLHE-16
ABOR393595 ncbi Alcanivorax borkumensis SK27
ABAU360910 ncbi Bordetella avium 197N7
ABAC204669 ncbi Candidatus Koribacter versatilis Ellin3456


Names of the homologs of the genes in the group in each of these orgs
  G6465   G6464   EG11112   EG11111   EG11032   EG10947   EG10504   
YPSE349747 YPSIP31758_2595YPSIP31758_2596YPSIP31758_2603YPSIP31758_2609YPSIP31758_2598YPSIP31758_2593YPSIP31758_2604
YPSE273123 YPTB1402YPTB1401YPTB1396YPTB1392YPTB1399YPTB1404YPTB1395
YPES386656 YPDSF_2318YPDSF_2319YPDSF_2324YPDSF_2330YPDSF_2321YPDSF_2316YPDSF_2325
YPES377628 YPN_2603YPN_2604YPN_2609YPN_2614YPN_2606YPN_2601YPN_2610
YPES360102 YPA_0667YPA_0666YPA_0661YPA_0656YPA_0664YPA_0669YPA_0660
YPES349746 YPANGOLA_A1614YPANGOLA_A1613YPANGOLA_A1604YPANGOLA_A1599YPANGOLA_A1611YPANGOLA_A1616YPANGOLA_A1603
YPES214092 YPO1377YPO1376YPO1371YPO1366YPO1374YPO1379YPO1370
YPES187410 Y2798Y2800Y2806Y2802Y2796Y2807
YENT393305 YE1526YE1525YE1520YE1516YE1523YE1528YE1519
XORY360094 XOOORF_2775XOOORF_2777XOOORF_2783XOOORF_3133XOOORF_2778XOOORF_2888XOOORF_2784
XORY342109 XOO2403XOO2405XOO2410XOO1765XOO2406XOO1988XOO2411
XORY291331 XOO2544XOO2546XOO2551XOO1870XOO2547XOO2116XOO2552
XFAS405440 XFASM12_0795XFASM12_0793XFASM12_0789XFASM12_0791XFASM12_1477XFASM12_0788
XFAS183190 PD_0672PD_0670PD_0667PD_0669PD_1318PD_0666
XFAS160492 XF1452XF1450XF1446XF2352XF1448XF2286XF1445
XCAM487884 XCC-B100_2273XCC-B100_2271XCC-B100_2268XCC-B100_3017XCC-B100_2270XCC-B100_2666XCC-B100_2267
XCAM316273 XCAORF_2254XCAORF_2252XCAORF_2248XCAORF_1541XCAORF_2250XCAORF_1873XCAORF_2247
XCAM314565 XC_2211XC_2213XC_2216XC_2955XC_2214XC_2640XC_2217
XCAM190485 XCC1974XCC1972XCC1969XCC1286XCC1971XCC1594XCC1968
XAXO190486 XAC2008XAC2006XAC2003XAC1337XAC2005XAC1653XAC2002
VVUL216895 VV1_2949VV1_2950VV1_2124VV1_2119VV1_2810VV1_2946VV1_2123
VVUL196600 VV1323VV1322VV2324VV1455VV1325VV2321
VPAR223926 VP1106VP1105VP1018VP1012VP1251VP1108VP1016
VFIS312309 VF0906VF0905VF1762VF1767VF0902VF0908VF1764
VCHO345073 VC0395_A0626VC0395_A1493VC0395_A1336VC0395_A0712VC0395_A0803VC0395_A0628VC0395_A1338
VCHO VC1107VC1903VC1735VC1142VC1182VC1110VC1737
TTUR377629 TERTU_1970TERTU_1969TERTU_1967TERTU_1961TERTU_1968TERTU_1973TERTU_1964
TDEN292415 TBD_1497TBD_1002TBD_2043TBD_0855TBD_1001TBD_1229TBD_0426
TCRU317025 TCR_0765TCR_0764TCR_1114TCR_0763TCR_0768TCR_1113
STYP99287 STM0961STM0960STM0955STM0943STM0958STM0963STM0953
SSP94122 SHEWANA3_2051SHEWANA3_2050SHEWANA3_1756SHEWANA3_1751SHEWANA3_2047SHEWANA3_2054SHEWANA3_1754
SSON300269 SSO_0892SSO_0891SSO_0886SSO_0867SSO_0889SSO_0894SSO_0885
SSED425104 SSED_2128SSED_2127SSED_1889SSED_1884SSED_2124SSED_2131SSED_1887
SPRO399741 SPRO_1684SPRO_1683SPRO_1676SPRO_1672SPRO_1681SPRO_1686SPRO_1675
SPEA398579 SPEA_2232SPEA_2233SPEA_2529SPEA_2534SPEA_2258SPEA_2229SPEA_2531
SONE211586 SO_2307SO_2306SO_2623SO_2628SO_2303SO_2310SO_2625
SLOI323850 SHEW_2023SHEW_2024SHEW_1569SHEW_1564SHEW_2028SHEW_2020SHEW_1567
SHIGELLA LOLAFTSKAATCSPDTRXBSERSINFA
SHAL458817 SHAL_2216SHAL_2217SHAL_1724SHAL_1719SHAL_2024SHAL_2213SHAL_1722
SGLO343509 SG1109SG1108SG1100SG1106SG1111SG1103
SFLE373384 SFV_0882SFV_0881SFV_0876SFV_0871SFV_0879SFV_0884SFV_0875
SFLE198214 AAN42483.1AAN42482.1AAN42477.1AAN42473.1AAN42480.1AAN42485.1AAN42476.1
SENT454169 SEHA_C1060SEHA_C1059SEHA_C1054SEHA_C1042SEHA_C1057SEHA_C1062SEHA_C1053
SENT321314 SCH_0915SCH_0914SCH_0909SCH_0898SCH_0912SCH_0917SCH_0907
SENT295319 SPA1837SPA1838SPA1843SPA1856SPA1840SPA1835SPA1845
SENT220341 STY0959STY0958STY0953STY0939STY0956STY0961STY0951
SENT209261 T1973T1974T1979T1990T1976T1971T1980
SDYS300267 SDY_2370SDY_2371SDY_2376SDY_2381SDY_2373SDY_2368SDY_2377
SDEN318161 SDEN_1744SDEN_1743SDEN_1837SDEN_1832SDEN_1713SDEN_1747SDEN_1835
SDEG203122 SDE_1694SDE_1693SDE_1691SDE_1685SDE_1692SDE_1697SDE_1688
SBOY300268 SBO_0824SBO_0823SBO_0818SBO_0813SBO_0821SBO_0826SBO_0817
SBAL402882 SHEW185_2214SHEW185_2215SHEW185_2462SHEW185_2467SHEW185_2218SHEW185_2211SHEW185_2464
SBAL399599 SBAL195_2322SBAL195_2323SBAL195_2582SBAL195_2587SBAL195_2326SBAL195_2319SBAL195_2584
RSOL267608 RSC2340RSP0884RSC1617RSC2466RSC2342RSC2337RSC2998
RMET266264 RMET_0686RMET_1596RMET_1216RMET_5818RMET_0684RMET_0695RMET_3296
RFER338969 RFER_3177RFER_3178RFER_2349RFER_3179RFER_3243RFER_4222
REUT381666 H16_A0755H16_A1582H16_A1403H16_B0002H16_A0753H16_A0764H16_A3463
REUT264198 REUT_A2599REUT_A2600REUT_A1319REUT_C6028REUT_A2601REUT_A2594
PSYR223283 PSPTO_3348PSPTO_3349PSPTO_3350PSPTO_3355PSPTO_1178PSPTO_3345PSPTO_3352
PSYR205918 PSYR_3178PSYR_3179PSYR_3180PSYR_3185PSYR_1016PSYR_3175PSYR_3182
PSTU379731 PST_2292PST_2293PST_2295PST_2300PST_2294PST_2289PST_2297
PSP56811 PSYCPRWF_0893PSYCPRWF_0620PSYCPRWF_0618PSYCPRWF_0613PSYCPRWF_0619PSYCPRWF_1539PSYCPRWF_1932
PSP312153 PNUC_0690PNUC_0743PNUC_0586PNUC_0689PNUC_0692PNUC_0074
PSP296591 BPRO_3798BPRO_3799BPRO_2326BPRO_3801BPRO_0953BPRO_0496
PPUT76869 PPUTGB1_3608PPUTGB1_3609PPUTGB1_3610PPUTGB1_3615PPUTGB1_0820PPUTGB1_3605PPUTGB1_3612
PPUT351746 PPUT_1830PPUT_1829PPUT_1828PPUT_1823PPUT_0809PPUT_1833PPUT_1826
PPUT160488 PP_4003PP_4004PP_4005PP_4010PP_0786PP_4000PP_4007
PPRO298386 PBPRA1163PBPRA1162PBPRA1155PBPRA1150PBPRA1159PBPRA1165PBPRA1153
PMUL272843 PM0256PM0255PM0481PM0573PM0258PM1031
PMEN399739 PMEN_2387PMEN_2388PMEN_2390PMEN_2395PMEN_2389PMEN_2384PMEN_2392
PLUM243265 PLU1602PLU1601PLU1596PLU1592PLU1599PLU1604PLU1595
PING357804 PING_1663PING_1662PING_2258PING_2209PING_1666PING_0744
PHAL326442 PSHAA1715PSHAA1716PSHAA1721PSHAA1726PSHAA1720PSHAA1712PSHAA1723
PFLU220664 PFL_3879PFL_3880PFL_3882PFL_3887PFL_0945PFL_3876PFL_3884
PFLU216595 PFLU3800PFLU3801PFLU3802PFLU3807PFLU5162PFLU3797PFLU3804
PFLU205922 PFL_3585PFL_3586PFL_3587PFL_3592PFL_0887PFL_3582PFL_3589
PENT384676 PSEEN2213PSEEN2212PSEEN2210PSEEN2205PSEEN0924PSEEN2216PSEEN2208
PCRY335284 PCRYO_1753PCRYO_0430PCRYO_0428PCRYO_2133PCRYO_0429PCRYO_1850PCRYO_1569
PATL342610 PATL_2459PATL_2460PATL_2371PATL_2376PATL_2370PATL_2456PATL_2373
PARC259536 PSYC_1571PSYC_0389PSYC_0387PSYC_1846PSYC_0388PSYC_1618PSYC_1409
PAER208964 PA2614PA2615PA2617PA2622PA2616PA2612PA2619
PAER208963 PA14_30310PA14_30290PA14_30270PA14_30200PA14_30280PA14_30330PA14_30240
NOCE323261 NOC_0348NOC_0347NOC_2596NOC_0345NOC_1036NOC_2598
NMUL323848 NMUL_A0178NMUL_A0176NMUL_A2709NMUL_A2246NMUL_A0023NMUL_A0180NMUL_A0788
NMEN374833 NMCC_0570NMCC_1226NMCC_1942NMCC_0796NMCC_1239NMCC_1597NMCC_1987B
NMEN272831 NMC0566NMC1251NMC0198NMC0776NMC1261NMC1602NMC0153
NMEN122587 NMA0830NMA1527NMA0063NMA1047NMA1538NMA1943NMA0108
NMEN122586 NMB_0622NMB_1314NMB_0206NMB_0838NMB_1324NMB_1684NMB_0163
NGON242231 NGO0205NGO0851NGO1778NGO0410NGO0580NGO1335NGO18211
NEUT335283 NEUT_2489NEUT_2488NEUT_0648NEUT_2046NEUT_0792NEUT_0263NEUT_0579
NEUR228410 NE1052NE1051NE2219NE1731NE1929NE0180NE0422
MSUC221988 MS1452MS1454MS1095MS0951MS1450MS0654
MSP400668 MMWYL1_3255MMWYL1_3256MMWYL1_3258MMWYL1_3262MMWYL1_3225MMWYL1_3252MMWYL1_3259
MPET420662 MPE_A1121MPE_A1120MPE_A1469MPE_A2463MPE_A1118MPE_A2692MPE_A3422
MFLA265072 MFLA_1125MFLA_1124MFLA_1076MFLA_2140MFLA_1119MFLA_1129MFLA_0300
MCAP243233 MCA_1783MCA_1695MCA_1792MCA_1694MCA_1971MCA_1790
MAQU351348 MAQU_1549MAQU_1550MAQU_1759MAQU_1753MAQU_1547MAQU_1756
LPNE400673 LPC_1206LPC_1207LPC_1209LPC_2917LPC_1208LPC_2833LPC_1211
LPNE297246 LPP1729LPP1730LPP1732LPP0493LPP1731LPP0575LPP1734
LPNE297245 LPL1729LPL1730LPL1732LPL0469LPL1731LPL0551LPL1734
LPNE272624 LPG1765LPG1766LPG1768LPG0426LPG1767LPG0513LPG1770
LCHO395495 LCHO_0757LCHO_0756LCHO_1978LCHO_1662LCHO_0754LCHO_0692LCHO_3928
KPNE272620 GKPORF_B5364GKPORF_B5363GKPORF_B5356GKPORF_B5352GKPORF_B5360GKPORF_B5366GKPORF_B5355
JSP375286 MMA_1155MMA_1154MMA_2511MMA_2516MMA_1153MMA_1157MMA_3390
ILOI283942 IL0666IL0667IL0671IL0676IL0670IL0663IL0673
HSOM228400 HSM_1283HSM_0376HSM_1331HSM_1028HSM_1560HSM_1116
HSOM205914 HS_0814HS_1186HS_0856HS_1148HS_1075HS_0705
HINF71421 HI_1591HI_1592HI_1434.1HI_1158HI_0110HI_0548
HINF374930 CGSHIEE_05575CGSHIEE_05580CGSHIEE_04760CGSHIEE_06250CGSHIEE_02725CGSHIEE_00245
HINF281310 NTHI1456NTHI1455NTHI1698NTHI1327NTHI0200NTHI0674
HHAL349124 HHAL_1394HHAL_1396HHAL_1397HHAL_2289HHAL_1392HHAL_1399
HCHE349521 HCH_02446HCH_02445HCH_02343HCH_02337HCH_02344HCH_02449HCH_02340
HARS204773 HEAR1019HEAR1018HEAR2442HEAR2448HEAR1017HEAR1022HEAR3145
ESP42895 ENT638_1415ENT638_1414ENT638_1409ENT638_1397ENT638_1412ENT638_1417ENT638_1407
EFER585054 EFER_1040EFER_1039EFER_1033EFER_1028EFER_1036EFER_1042EFER_1032
ECOO157 LOLAFTSKAATCSPDTRXBSERSINFA
ECOL83334 ECS0976ECS0975ECS0970ECS0966ECS0973ECS0978ECS0969
ECOL585397 ECED1_0865ECED1_0864ECED1_0859ECED1_0847ECED1_0862ECED1_0867ECED1_0858
ECOL585057 ECIAI39_2257ECIAI39_2260ECIAI39_2265ECIAI39_2272ECIAI39_2262ECIAI39_2255ECIAI39_2266
ECOL585056 ECUMN_1086ECUMN_1085ECUMN_1080ECUMN_1075ECUMN_1083ECUMN_1088ECUMN_1079
ECOL585055 EC55989_0936EC55989_0935EC55989_0930EC55989_0925EC55989_0933EC55989_0938EC55989_0929
ECOL585035 ECS88_0922ECS88_0921ECS88_0914ECS88_0902ECS88_0917ECS88_0924ECS88_0913
ECOL585034 ECIAI1_0931ECIAI1_0930ECIAI1_0925ECIAI1_0920ECIAI1_0928ECIAI1_0933ECIAI1_0924
ECOL481805 ECOLC_2705ECOLC_2706ECOLC_2711ECOLC_2716ECOLC_2708ECOLC_2703ECOLC_2712
ECOL469008 ECBD_2704ECBD_2705ECBD_2710ECBD_2714ECBD_2707ECBD_2702ECBD_2711
ECOL439855 ECSMS35_2229ECSMS35_2230ECSMS35_2236ECSMS35_2280ECSMS35_2233ECSMS35_2227ECSMS35_2237
ECOL413997 ECB_00895ECB_00894ECB_00889ECB_00885ECB_00892ECB_00897ECB_00888
ECOL409438 ECSE_0949ECSE_0948ECSE_0943ECSE_0938ECSE_0946ECSE_0951ECSE_0942
ECOL364106 UTI89_C0906UTI89_C0905UTI89_C0900UTI89_C0885UTI89_C0903UTI89_C0908UTI89_C0899
ECOL362663 ECP_0905ECP_0904ECP_0899ECP_0895ECP_0902ECP_0907ECP_0898
ECOL331111 ECE24377A_0966ECE24377A_0965ECE24377A_0958ECE24377A_0953ECE24377A_0962ECE24377A_0968ECE24377A_0957
ECOL316407 ECK0882:JW0874:B0891ECK0881:JW0873:B0890ECK0876:JW0868:B0885ECK0871:JW0864:B0880ECK0879:JW0871:B0888ECK0884:JW0876:B0893ECK0875:JW0867:B0884
ECOL199310 C1028C1027C1022C1017C1025C1030C1021
ECAR218491 ECA2646ECA2647ECA2652ECA2659ECA2649ECA2644ECA2653
DNOD246195 DNO_0484DNO_0483DNO_0680DNO_1099DNO_1065DNO_1198
DARO159087 DARO_1296DARO_1295DARO_1196DARO_3093DARO_1293DARO_1300DARO_0340
CVIO243365 CV_1614CV_2479CV_1798CV_3667CV_2813CV_1375CV_4165
CSAL290398 CSAL_2435CSAL_2436CSAL_2437CSAL_1668CSAL_2959CSAL_2315CSAL_2439
CPSY167879 CPS_2758CPS_2759CPS_2763CPS_2895CPS_2762CPS_2755CPS_2765
CJAP155077 CJA_2555CJA_2556CJA_2565CJA_2570CJA_2561CJA_2552CJA_2567
CBLO291272 BPEN_396BPEN_397BPEN_462BPEN_398BPEN_395BPEN_399
BVIE269482 BCEP1808_0892BCEP1808_2410BCEP1808_1520BCEP1808_2598BCEP1808_0890BCEP1808_0895BCEP1808_0351
BTHA271848 BTH_I1562BTH_I1561BTH_I2509BTH_I2936BTH_I1560BTH_I1565BTH_I3047
BSP36773 BCEP18194_A4079BCEP18194_A4078BCEP18194_A4698BCEP18194_A5852BCEP18194_A4077BCEP18194_A4082BCEP18194_A3468
BPSE320373 BURPS668_2989BURPS668_1185BURPS668_1811BURPS668_3598BURPS668_2991BURPS668_2986BURPS668_3725
BPSE320372 BURPS1710B_A3332BURPS1710B_A1415BURPS1710B_A2139BURPS1710B_A3897BURPS1710B_A3335BURPS1710B_A3329BURPS1710B_A4048
BPSE272560 BPSL2603BPSL1109BPSL1864BPSL3079BPSL2605BPSL2600BPSL3192
BPET94624 BPET1575BPET1574BPET0933BPET2663BPET1573BPET1587BPET4929
BPER257313 BP2472BP2473BP3444BP2757BP2474BP2470BP3637
BPAR257311 BPP3461BPP3462BPP3538BPP2571BPP3463BPP3459BPP0052
BMAL320389 BMA10247_1989BMA10247_1990BMA10247_0770BMA10247_3184BMA10247_1991BMA10247_1986BMA10247_3499
BMAL320388 BMASAVP1_A0791BMASAVP1_A1032BMASAVP1_A1734BMASAVP1_A0574BMASAVP1_A0789BMASAVP1_A0794BMASAVP1_A3148
BMAL243160 BMA_2121BMA_2122BMA_1251BMA_2791BMA_2123BMA_2118BMA_2611
BCIC186490 BCI_0319BCI_0320BCI_0261BCI_0321BCI_0318BCI_0322
BCEN331272 BCEN2424_2321BCEN2424_1556BCEN2424_2520BCEN2424_0974BCEN2424_0979BCEN2424_0369
BCEN331271 BCEN_1709BCEN_1076BCEN_1909BCEN_0495BCEN_0500BCEN_2738
BBRO257310 BB3910BB3911BB3973BB2016BB3912BB3908BB0052
BAMB398577 BAMMC406_0848BAMMC406_2240BAMMC406_1478BAMMC406_2438BAMMC406_0846BAMMC406_0851BAMMC406_0297
BAMB339670 BAMB_0836BAMB_2360BAMB_1457BAMB_0408BAMB_0834BAMB_0839BAMB_0288
ASP76114 EBA7039EBA7041EBA4891EBC12EBA7042EBA7034
ASP62977 ACIAD2937ACIAD0891ACIAD0889ACIAD0890ACIAD2935ACIAD0472
ASP62928 AZO1366AZO1365AZO2208AZO1134AZO1363AZO1369AZO3396
ASAL382245 ASA_2437ASA_2438ASA_2443ASA_2448ASA_2440ASA_2435ASA_2445
AHYD196024 AHA_1866AHA_1865AHA_1860AHA_1855AHA_1863AHA_1868AHA_1858
AFER243159 AFE_2655AFE_2780AFE_2450AFE_2657AFE_2652AFE_2683
AEHR187272 MLG_1711MLG_1712MLG_1713MLG_0248MLG_1699MLG_1446
ABOR393595 ABO_1291ABO_1290ABO_1288ABO_1283ABO_1289ABO_1294ABO_1286
ABAU360910 BAV2694BAV2695BAV2751BAV2092BAV2696BAV2685BAV0055
ABAC204669 ACID345_1574ACID345_1757ACID345_4183ACID345_1337ACID345_0391ACID345_1249


Organism features enriched in list (features available for 160 out of the 169 orgs in the list)
Feature    Pvalue       Num occurrences in list  Total num occurrences  
Arrangment:Chains 0.00002171092
Arrangment:Pairs 0.001681143112
Disease:Bubonic_plague 0.000398866
Disease:Dysentery 0.000398866
Disease:Gastroenteritis 0.00022581013
Disease:Legionnaire's_disease 0.005519244
Disease:Meningitis_and_septicemia 0.005519244
Endospores:No 4.778e-929211
GC_Content_Range4:0-40 3.493e-2212213
GC_Content_Range4:40-60 9.052e-1399224
GC_Content_Range7:0-30 2.667e-6147
GC_Content_Range7:30-40 9.617e-1511166
GC_Content_Range7:50-60 9.858e-1259107
GC_Content_Range7:60-70 0.002553949134
Genome_Size_Range5:0-2 6.019e-195155
Genome_Size_Range5:2-4 0.000246237197
Genome_Size_Range5:4-6 3.268e-1895184
Genome_Size_Range5:6-10 0.00058262347
Genome_Size_Range9:0-1 0.0014867127
Genome_Size_Range9:1-2 2.058e-154128
Genome_Size_Range9:2-3 0.003585222120
Genome_Size_Range9:4-5 4.507e-74796
Genome_Size_Range9:5-6 3.123e-94888
Genome_Size_Range9:6-8 0.00003292238
Gram_Stain:Gram_Neg 8.047e-28146333
Habitat:Specialized 0.0055727753
Motility:No 3.667e-1014151
Motility:Yes 5.468e-11108267
Optimal_temp.:35-37 1.291e-61213
Oxygen_Req:Anaerobic 3.076e-114102
Oxygen_Req:Facultative 1.260e-782201
Pathogenic_in:No 8.739e-640226
Pathogenic_in:Plant 0.00020931115
Shape:Coccus 5.092e-6782
Shape:Rod 1.896e-14134347
Shape:Spiral 0.0011706234
Temp._range:Mesophilic 0.0024403141473
Temp._range:Psychrophilic 0.000187289
Temp._range:Thermophilic 0.0001276135



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ORGANISMS CONTAINING AT MOST 1 GENES FROM THE GROUP:

Total number of orgs: 126
Effective number of orgs (counting one per cluster within 468 clusters): 111

Organism list
Homologs in each organism in the list
Features enriched in organism list


Follow (ncbi) link, when present, to find the set of organism features for each organism
Org ID  Org Name  # genes in group found in org  
UURE95667 Ureaplasma urealyticum serovar 130
UURE95664 Ureaplasma urealyticum serovar 100
UPAR505682 ncbi Ureaplasma parvum serovar 3 str. ATCC 278150
UMET351160 ncbi uncultured methanogenic archaeon RC-I0
TWHI218496 ncbi Tropheryma whipplei TW08/270
TWHI203267 ncbi Tropheryma whipplei Twist0
TVOL273116 ncbi Thermoplasma volcanium GSS10
TTHE300852 ncbi Thermus thermophilus HB81
TTHE262724 ncbi Thermus thermophilus HB271
TPEN368408 ncbi Thermofilum pendens Hrk 50
TPAL243276 ncbi Treponema pallidum pallidum Nichols1
TMAR243274 ncbi Thermotoga maritima MSB81
TKOD69014 ncbi Thermococcus kodakarensis KOD10
TDEN326298 ncbi Sulfurimonas denitrificans DSM 12511
TACI273075 ncbi Thermoplasma acidophilum DSM 17280
STOK273063 ncbi Sulfolobus tokodaii 70
SSUI391295 ncbi Streptococcus suis 05ZYH331
SSP64471 ncbi Synechococcus sp. CC93111
SSP1148 ncbi Synechocystis sp. PCC 68031
SSP1131 Synechococcus sp. CC96051
SSOL273057 ncbi Sulfolobus solfataricus P20
SPYO286636 ncbi Streptococcus pyogenes MGAS103941
SPYO193567 ncbi Streptococcus pyogenes SSI-11
SMAR399550 ncbi Staphylothermus marinus F10
SACI330779 ncbi Sulfolobus acidocaldarius DSM 6390
RALB246199 Ruminococcus albus 81
PTOR263820 ncbi Picrophilus torridus DSM 97900
PSP117 Pirellula sp.1
PMOB403833 ncbi Petrotoga mobilis SJ951
PMAR93060 ncbi Prochlorococcus marinus MIT 92151
PMAR74547 ncbi Prochlorococcus marinus MIT 93130
PMAR74546 ncbi Prochlorococcus marinus MIT 93121
PMAR59920 ncbi Prochlorococcus marinus NATL2A1
PMAR167555 ncbi Prochlorococcus marinus NATL1A1
PMAR167546 ncbi Prochlorococcus marinus MIT 93011
PMAR167542 ncbi Prochlorococcus marinus MIT 95151
PMAR167540 Prochlorococcus marinus pastoris MED4ax1
PMAR167539 ncbi Prochlorococcus marinus marinus CCMP13751
PMAR146891 ncbi Prochlorococcus marinus AS96011
PISL384616 ncbi Pyrobaculum islandicum DSM 41840
PHOR70601 ncbi Pyrococcus horikoshii OT30
PFUR186497 ncbi Pyrococcus furiosus DSM 36380
PAST100379 Onion yellows phytoplasma0
PARS340102 ncbi Pyrobaculum arsenaticum DSM 135140
PAER178306 ncbi Pyrobaculum aerophilum IM20
PABY272844 ncbi Pyrococcus abyssi GE50
NPHA348780 ncbi Natronomonas pharaonis DSM 21601
MTHE349307 ncbi Methanosaeta thermophila PT0
MTHE187420 ncbi Methanothermobacter thermautotrophicus Delta H0
MSYN262723 ncbi Mycoplasma synoviae 530
MSTA339860 ncbi Methanosphaera stadtmanae DSM 30910
MSED399549 ncbi Metallosphaera sedula DSM 53480
MPUL272635 ncbi Mycoplasma pulmonis UAB CTIP0
MPNE272634 ncbi Mycoplasma pneumoniae M1290
MPEN272633 ncbi Mycoplasma penetrans HF-20
MMYC272632 ncbi Mycoplasma mycoides mycoides SC str. PG10
MMOB267748 ncbi Mycoplasma mobile 163K0
MMAZ192952 ncbi Methanosarcina mazei Go11
MMAR444158 ncbi Methanococcus maripaludis C60
MMAR426368 ncbi Methanococcus maripaludis C70
MMAR402880 ncbi Methanococcus maripaludis C50
MMAR368407 ncbi Methanoculleus marisnigri JR10
MMAR267377 ncbi Methanococcus maripaludis S20
MLAB410358 ncbi Methanocorpusculum labreanum Z0
MKAN190192 ncbi Methanopyrus kandleri AV190
MJAN243232 ncbi Methanocaldococcus jannaschii DSM 26610
MHYO295358 ncbi Mycoplasma hyopneumoniae 2320
MHYO262722 ncbi Mycoplasma hyopneumoniae 74480
MHYO262719 ncbi Mycoplasma hyopneumoniae J0
MHUN323259 ncbi Methanospirillum hungatei JF-10
MGEN243273 ncbi Mycoplasma genitalium G370
MFLO265311 ncbi Mesoplasma florum L10
MCAP340047 ncbi Mycoplasma capricolum capricolum ATCC 273430
MBUR259564 ncbi Methanococcoides burtonii DSM 62420
MBAR269797 ncbi Methanosarcina barkeri Fusaro0
MART243272 ncbi Mycoplasma arthritidis 158L3-10
MAEO419665 ncbi Methanococcus aeolicus Nankai-30
MACE188937 ncbi Methanosarcina acetivorans C2A0
LREU557436 ncbi Lactobacillus reuteri DSM 200161
IHOS453591 ncbi Ignicoccus hospitalis KIN4/I0
HWAL362976 ncbi Haloquadratum walsbyi DSM 167901
HSP64091 ncbi Halobacterium sp. NRC-11
HSAL478009 ncbi Halobacterium salinarum R11
HPYL85963 ncbi Helicobacter pylori J990
HPYL357544 ncbi Helicobacter pylori HPAG10
HPY ncbi Helicobacter pylori 266950
HMUK485914 ncbi Halomicrobium mukohataei DSM 122861
HMAR272569 ncbi Haloarcula marismortui ATCC 430491
HHEP235279 ncbi Helicobacter hepaticus ATCC 514490
HBUT415426 ncbi Hyperthermus butylicus DSM 54560
HACI382638 ncbi Helicobacter acinonychis Sheeba0
FSUC59374 ncbi Fibrobacter succinogenes succinogenes S850
DSP255470 ncbi Dehalococcoides sp. CBDB10
DSP216389 ncbi Dehalococcoides sp. BAV10
DETH243164 ncbi Dehalococcoides ethenogenes 1950
CTRA471473 ncbi Chlamydia trachomatis L2b/UCH-1/proctitis1
CTRA471472 ncbi Chlamydia trachomatis 434/Bu1
CSUL444179 ncbi Candidatus Sulcia muelleri GWSS0
CPRO264201 ncbi Candidatus Protochlamydia amoebophila UWE251
CPNE182082 ncbi Chlamydophila pneumoniae TW-1831
CPNE138677 ncbi Chlamydophila pneumoniae J1381
CPNE115713 ncbi Chlamydophila pneumoniae CWL0291
CPNE115711 ncbi Chlamydophila pneumoniae AR391
CMUR243161 ncbi Chlamydia muridarum Nigg1
CMET456442 ncbi Candidatus Methanoregula boonei 6A80
CMAQ397948 ncbi Caldivirga maquilingensis IC-1670
CKOR374847 ncbi Candidatus Korarchaeum cryptofilum OPF80
CHOM360107 ncbi Campylobacter hominis ATCC BAA-3810
CFEL264202 ncbi Chlamydophila felis Fe/C-561
CCON360104 ncbi Campylobacter concisus 138261
CCHL340177 ncbi Chlorobium chlorochromatii CaD31
CCAV227941 ncbi Chlamydophila caviae GPIC1
CABO218497 ncbi Chlamydophila abortus S26/31
BXEN266265 ncbi Burkholderia xenovorans LB4001
BTUR314724 ncbi Borrelia turicatae 91E1351
BLON206672 ncbi Bifidobacterium longum NCC27051
BHER314723 ncbi Borrelia hermsii DAH1
BGAR290434 ncbi Borrelia garinii PBi1
BBUR224326 ncbi Borrelia burgdorferi B311
BAFZ390236 ncbi Borrelia afzelii PKo1
AYEL322098 ncbi Aster yellows witches-broom phytoplasma AYWB0
AURANTIMONAS Aurantimonas manganoxydans SI85-9A10
APER272557 ncbi Aeropyrum pernix K10
ALAI441768 ncbi Acholeplasma laidlawii PG-8A1
AFUL224325 ncbi Archaeoglobus fulgidus DSM 43040
AAEO224324 ncbi Aquifex aeolicus VF51


Names of the homologs of the genes in the group in each of these orgs
  G6465   G6464   EG11112   EG11111   EG11032   EG10947   EG10504   
UURE95667
UURE95664
UPAR505682
UMET351160
TWHI218496
TWHI203267
TVOL273116
TTHE300852 TTHA1920
TTHE262724 TT_C1555
TPEN368408
TPAL243276 TP_0999
TMAR243274 TM_1379
TKOD69014
TDEN326298 TMDEN_0456
TACI273075
STOK273063
SSUI391295 SSU05_0092
SSP64471 GSYN0973
SSP1148 SLL0869
SSP1131 SYNCC9605_1981
SSOL273057
SPYO286636 M6_SPY1477
SPYO193567 SPS0350
SMAR399550
SACI330779
RALB246199 GRAORF_3038
PTOR263820
PSP117 RB7223
PMOB403833 PMOB_0102
PMAR93060 P9215_13551
PMAR74547
PMAR74546 PMT9312_1247
PMAR59920 PMN2A_0758
PMAR167555 NATL1_15981
PMAR167546 P9301ORF_1361
PMAR167542 P9515ORF_1374
PMAR167540 PMM1150
PMAR167539 PRO_1245
PMAR146891 A9601_13251
PISL384616
PHOR70601
PFUR186497
PAST100379
PARS340102
PAER178306
PABY272844
NPHA348780 NP2680A
MTHE349307
MTHE187420
MSYN262723
MSTA339860
MSED399549
MPUL272635
MPNE272634
MPEN272633
MMYC272632
MMOB267748
MMAZ192952 MM0865
MMAR444158
MMAR426368
MMAR402880
MMAR368407
MMAR267377
MLAB410358
MKAN190192
MJAN243232
MHYO295358
MHYO262722
MHYO262719
MHUN323259
MGEN243273
MFLO265311
MCAP340047
MBUR259564
MBAR269797
MART243272
MAEO419665
MACE188937
LREU557436 LREU_0097
IHOS453591
HWAL362976 HQ1652A
HSP64091 VNG1259G
HSAL478009 OE2805R
HPYL85963
HPYL357544
HPY
HMUK485914 HMUK_2414
HMAR272569 RRNAC1129
HHEP235279
HBUT415426
HACI382638
FSUC59374
DSP255470
DSP216389
DETH243164
CTRA471473 CTLON_0350
CTRA471472 CTL0354
CSUL444179
CPRO264201 PC1713
CPNE182082 CPB0322
CPNE138677 CPJ0314
CPNE115713 CPN0314
CPNE115711 CP_0444
CMUR243161 TC_0375
CMET456442
CMAQ397948
CKOR374847
CHOM360107
CFEL264202 CF0539
CCON360104 CCC13826_0773
CCHL340177 CAG_1151
CCAV227941 CCA_00468
CABO218497 CAB454
BXEN266265 BXE_B2951
BTUR314724 BT0169
BLON206672 BL0649
BHER314723 BH0169
BGAR290434 BG0168
BBUR224326 BB_0169
BAFZ390236 BAPKO_0171
AYEL322098
AURANTIMONAS
APER272557
ALAI441768 ACL_0009
AFUL224325
AAEO224324 AQ_298


Organism features enriched in list (features available for 118 out of the 126 orgs in the list)
Feature    Pvalue       Num occurrences in list  Total num occurrences  
Arrangment:Aggregates 0.002722569
Arrangment:Chains 0.0007734892
Arrangment:Pairs 0.00007749112
Arrangment:Singles 0.005992869286
Disease:Pharyngitis 2.319e-688
Disease:bronchitis_and_pneumonitis 2.319e-688
Endospores:No 4.695e-1072211
GC_Content_Range4:0-40 0.000146360213
GC_Content_Range4:60-100 1.817e-611145
GC_Content_Range7:0-30 0.00016372047
GC_Content_Range7:40-50 0.006356133117
GC_Content_Range7:50-60 0.006754213107
GC_Content_Range7:60-70 0.000015311134
Genome_Size_Range5:0-2 5.963e-2881155
Genome_Size_Range5:4-6 6.751e-174184
Genome_Size_Range5:6-10 0.0001942147
Genome_Size_Range9:0-1 7.756e-102027
Genome_Size_Range9:1-2 2.993e-1661128
Genome_Size_Range9:3-4 0.0010390677
Genome_Size_Range9:4-5 1.727e-7396
Genome_Size_Range9:5-6 9.520e-9188
Gram_Stain:Gram_Neg 0.000026048333
Gram_Stain:Gram_Pos 3.281e-89150
Habitat:Aquatic 0.00004883391
Habitat:Multiple 4.954e-128178
Habitat:Specialized 2.346e-62553
Habitat:Terrestrial 0.0061454131
Optimal_temp.:- 0.003620840257
Optimal_temp.:100 0.008123833
Optimal_temp.:35-40 0.008123833
Optimal_temp.:37 0.001208833106
Optimal_temp.:85 0.001610844
Oxygen_Req:Aerobic 0.000188022185
Oxygen_Req:Anaerobic 4.095e-842102
Oxygen_Req:Facultative 0.000090524201
Pathogenic_in:Human 0.001524230213
Pathogenic_in:No 0.008186456226
Pathogenic_in:Swine 0.006468045
Salinity:Extreme_halophilic 0.004308657
Shape:Irregular_coccus 6.057e-131717
Shape:Oval 0.006468045
Shape:Pleomorphic 0.009235758
Shape:Rod 4.942e-1829347
Shape:Sphere 1.797e-91619
Shape:Spiral 0.00653241334
Temp._range:Hyperthermophilic 7.809e-111923
Temp._range:Mesophilic 0.000100481473
Temp._range:Thermophilic 0.00840481335



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ORGANISMS ENRICHED FOR GROUP:




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ORGANISMS DEPLETED FOR GROUP:




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PHYLOGENETIC PROFILE SIMILARITY WITH KNOWN PATHWAYS:

Pathways or complexes with absolute value of Pearson coefficient with respect to candidate larger than 0.4 are listed below
The candidate is assumed to exist in orgs listed in section List of organisms containing most genes from the group


Pathway or complex  # Orgs containing it  # of those orgs also containing candidate  Pearson Coeff  
PWY0-1241 (ADP-L-glycero-β-D-manno-heptose biosynthesis)2181450.6499
AST-PWY (arginine degradation II (AST pathway))1201020.6358
GLYCOCAT-PWY (glycogen degradation I)2461510.6224
PWY-5111 (CMP-KDO biosynthesis II (from D-arabinose 5-phosphate))3001640.5970
COBALSYN-PWY (adenosylcobalamin salvage from cobinamide I)1951260.5691
PWY4FS-7 (phosphatidylglycerol biosynthesis I (plastidic))2911570.5649
KDO-LIPASYN-PWY (KDO2-lipid A biosynthesis I)2251360.5634
PWY0-1319 (CDP-diacylglycerol biosynthesis II)2961580.5618
PHOSLIPSYN-PWY (phospholipid biosynthesis I)2901560.5597
LIPA-CORESYN-PWY (Lipid A-core biosynthesis)1761170.5554
PWY-1269 (CMP-KDO biosynthesis I)3251650.5553
PWY-5918 (heme biosynthesis I)2721490.5475
PWY-4041 (γ-glutamyl cycle)2791500.5395
PWY-5755 (4-hydroxybenzoate biosynthesis II (bacteria and fungi))81720.5370
HEME-BIOSYNTHESIS-II (heme biosynthesis from uroporphyrinogen-III I)2861510.5319
PWY-5386 (methylglyoxal degradation I)3051560.5291
NAGLIPASYN-PWY (lipid IVA biosynthesis)3481650.5133
GLUTATHIONESYN-PWY (glutathione biosynthesis)3391620.5077
ECASYN-PWY (enterobacterial common antigen biosynthesis)1911160.5026
PWY-5913 (TCA cycle variation IV)3011510.5010
PWY-5148 (acyl-CoA hydrolysis)2271270.4908
3-HYDROXYPHENYLACETATE-DEGRADATION-PWY (4-hydroxyphenylacetate degradation)149980.4873
GLUCONSUPER-PWY (D-gluconate degradation)2291270.4858
PWY-5857 (ubiquinone-10 biosynthesis (prokaryotic))1831100.4784
LIPASYN-PWY (phospholipases)2121190.4685
ENTNER-DOUDOROFF-PWY (Entner-Doudoroff pathway I)2491310.4677
GLYCOLYSIS-E-D (superpathway of glycolysis and Entner-Doudoroff)2491310.4677
TYRFUMCAT-PWY (tyrosine degradation I)1841090.4676
GALACTITOLCAT-PWY (galactitol degradation)73610.4624
PWY-5855 (ubiquinone-7 biosynthesis (prokaryotic))1911100.4556
PWY0-981 (taurine degradation IV)106760.4539
PWY0-845 (superpathway of pyridoxal 5'-phosphate biosynthesis and salvage)3291510.4466
GLUCARDEG-PWY (D-glucarate degradation I)152940.4436
PWY0-1182 (trehalose degradation II (trehalase))70570.4345
POLYISOPRENSYN-PWY (polyisoprenoid biosynthesis (E. coli))116780.4316
PWY0-1329 (succinate to cytochrome bo oxidase electron transfer)96690.4296
PWY-3162 (tryptophan degradation V (side chain pathway))94680.4287
PWY-5856 (ubiquinone-9 biosynthesis (prokaryotic))2551270.4246
P601-PWY (D-camphor degradation)95680.4241
DAPLYSINESYN-PWY (lysine biosynthesis I)3421510.4224
UBISYN-PWY (ubiquinol-8 biosynthesis (prokaryotic))3981630.4136
LPSSYN-PWY (superpathway of lipopolysaccharide biosynthesis)91650.4121
KDOSYN-PWY (KDO transfer to lipid IVA I)1801000.4076
KDO-NAGLIPASYN-PWY (superpathway of KDO2-lipid A biosynthesis)179990.4024
PWY0-541 (cyclopropane fatty acid (CFA) biosynthesis)3001370.4019
REDCITCYC (TCA cycle variation II)174970.4007
PWY0-1335 (NADH to cytochrome bo oxidase electron transfer)112730.4007



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PAIRWISE GENOME CONTEXT SCORE MATRIX:

  G6464   EG11112   EG11111   EG11032   EG10947   EG10504   
G64650.9998210.9992530.9988280.9996070.9996720.999101
G64640.9991970.9986630.9995360.9992880.998717
EG111120.9992210.9990440.9989890.999431
EG111110.998530.9985560.999145
EG110320.9992710.998743
EG109470.998891
EG10504



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PAIRWISE BLAST SCORES:

  G6465   G6464   EG11112   EG11111   EG11032   EG10947   EG10504   
G64650.0f0------
G6464-0.0f0-----
EG11112--0.0f0----
EG11111---0.0f0---
EG11032----0.0f0--
EG10947-----0.0f0-
EG10504------0.0f0



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PATHWAYS OR PROTEIN COMPLEX MATCHES IN TARGET ORG:

For each case, all genes involved in the pathway or complex are listed. For each gene we list: a tag indicating whether the gene is part of the candidate list or not, the average and the minimum scores of the gene to the candidate list, the gene name, and its product names.



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GENOME CONTEXT INFORMATION:

Each row corresponds to a replicon in an organism, each column to a gene in the candidate. The second column indicates whether the organims was included in the list used to compute the genome context scores or not. Some organisms are not included because they are phylogenetically too similar to others already in the list.
The number in the matrix indicate the position of the homolog of the gene in the replicon. All numbers are relative to the smaller one, which is assigned a position of zero. Two columns with the same number indicate that the two genes matched the same gene in that organism.

Genome browser links for gene clusters

The links below opens a genome browser BioCyc page for each cluster of genes in the target genome. These pages shows the central gene of the cluster in the target genome and its best homolog in the reference genomes, for the genomes that contain homologs for at least 75% of the genes in the group. Only one genome per phylogenetic cluster of organisms is shown, to keep the list smaller.

EG10504 EG10947 EG11032 EG11111 EG11112 G6464 G6465 (centered at EG11032)


ORG:REPLICON:CIRC?\GENE  IN REF LIST  G6465   G6464   EG11112   EG11111   EG11032   EG10947   EG10504   
188/623370/623271/623216/623399/623405/623410/623
AAEO224324:0:Tyes-----0-
AAUR290340:0:Tyes----0--
AAUR290340:2:Tyes---0---
AAVE397945:0:Tyes3143150-316646-
ABAC204669:0:Tyes11901372-38239530864
ABAU360910:0:Tyes2641264227012037264326340
ABOR393595:0:Tyes87506113
ABUT367737:0:Tyes-640----
ACAU438753:0:Tyes-01128-10661665-
ACEL351607:0:Tyes----1817-0
ACRY349163:8:Tyes-0301-20725802323
ADEH290397:0:Tyes--01973193--
AEHR187272:0:Tyes145414551456-014421192
AFER243159:0:Tyes201-3250202198228
AHYD196024:0:Tyes1110508133
ALAI441768:0:Tyes-----0-
AMAR234826:0:Tyes-0--135--
AMAR329726:9:Tyes--3001-282102627
AMET293826:0:Tyes-2587-1556-04386
ANAE240017:0:Tyes----1979-0
AORE350688:0:Tyes-1526-2017-0509
APHA212042:0:Tyes-287--0--
APLE416269:0:Tyes393535--07861143
APLE434271:0:Tno402501--07631126
ASAL382245:5:Tyes238135010
ASP1667:3:Tyes---2590--
ASP232721:2:Tyes135413550-13561413-
ASP62928:0:Tyes239238109602362422293
ASP62977:0:Tyes2300401399-40022980
ASP76114:2:Tyes14761477251014791473-
AVAR240292:3:Tyes--1032-3940-0
BABO262698:1:Tno-94819-5730-
BAFZ390236:2:Fyes------0
BAMB339670:3:Tno562213212021205605650
BAMB398577:3:Tno5501971119521725485530
BAMY326423:0:Tyes-2671---0148
BANT260799:0:Tno-4620---0127
BANT261594:2:Tno-4544---0118
BANT568206:2:Tyes-4789---0116
BANT592021:2:Tno-4777---0118
BAPH198804:0:Tyes---170102
BAPH372461:0:Tyes---112102
BBAC264462:0:Tyes--839-2700-
BBAC360095:0:Tyes-0--831404-
BBRO257310:0:Tyes3886388739521983388838840
BBUR224326:21:Fno------0
BCAN483179:1:Tno-100219-6160-
BCEN331271:2:Tno-12365981439052272
BCEN331272:3:Tyes-1949118521476046090
BCER226900:1:Tyes-4579---0134
BCER288681:0:Tno-4486---0124
BCER315749:1:Tyes-3178---0113
BCER405917:1:Tyes-4572---0119
BCER572264:1:Tno-4609---0116
BCIC186490:0:Tyes5657-0585559
BCLA66692:0:Tyes-2824---0179
BFRA272559:1:Tyes----0-2978
BFRA295405:0:Tno----0-3180
BGAR290434:2:Fyes------0
BHAL272558:0:Tyes-2450---0156
BHEN283166:0:Tyes-895--5590-
BHER314723:0:Fyes------0
BJAP224911:0:Fyes-03688-68084157-
BLIC279010:0:Tyes-3030-543-0140
BLON206672:0:Tyes----0--
BMAL243160:1:Tno769770013867717661219
BMAL320388:1:Tno216448113502142192513
BMAL320389:1:Tyes1187118802363118911842671
BMEL224914:1:Tno-0927-362946-
BMEL359391:1:Tno-90819-5550-
BOVI236:1:Tyes-839--5050-
BPAR257311:0:Tno3248324933282420325032460
BPER257313:0:Tyes23-265401069
BPET94624:0:Tyes643642017356416554035
BPSE272560:1:Tyes150807501985151015052099
BPSE320372:1:Tno179907112354180217962505
BPSE320373:1:Tno172506022318172717222444
BPUM315750:0:Tyes-2515---4020
BQUI283165:0:Tyes-655--3960-
BSP107806:2:Tyes---175102
BSP36773:2:Tyes616615125324306146190
BSP376:0:Tyes-03088-10253613-
BSUB:0:Tyes-3159---0152
BSUI204722:1:Tyes-97320-5980-
BSUI470137:1:Tno-787--6110-
BTHA271848:1:Tno219261340051448
BTHE226186:0:Tyes----1657-0
BTHU281309:1:Tno-4364---0113
BTHU412694:1:Tno-4112---0126
BTRI382640:1:Tyes-1300--084-
BTUR314724:0:Fyes------0
BVIE269482:7:Tyes5392045116322295375420
BWEI315730:4:Tyes-4371-3461-26480
BXEN266265:1:Tyes---0---
CABO218497:0:Tyes----0--
CACE272562:1:Tyes-1812-812-03118
CAULO:0:Tyes-18510-1007118-
CBEI290402:0:Tyes-10302359---0
CBLO203907:0:Tyes12--304
CBLO291272:0:Tno12-66304
CBOT36826:1:Tno-2359---03405
CBOT441770:0:Tyes-2169---03360
CBOT441771:0:Tno-2146---03226
CBOT441772:1:Tno-2323---03431
CBOT498213:1:Tno-2309---03458
CBOT508765:1:Tyes-1202---0220
CBOT515621:2:Tyes-2520---03602
CBOT536232:0:Tno-2553---03711
CBUR227377:1:Tyes23--507
CBUR360115:1:Tno23--406
CBUR434922:2:Tno23--406
CCAV227941:1:Tyes----0--
CCHL340177:0:Tyes----0--
CCON360104:2:Tyes-----0-
CCUR360105:0:Tyes-463---0-
CDES477974:0:Tyes-785---0241
CDIF272563:1:Tyes-1344-1375-084
CDIP257309:0:Tyes-1131-02022-218
CEFF196164:0:Fyes-1321--2421-0
CFEL264202:1:Tyes----0--
CFET360106:0:Tyes-023--647-
CGLU196627:0:Tyes-1381--2530-0
CHUT269798:0:Tyes----0-1335
CHYD246194:0:Tyes-249--017261342
CJAP155077:0:Tyes3413189015
CJEI306537:0:Tyes-0-8581004-656
CJEJ192222:0:Tyes-0228---694
CJEJ195099:0:Tno--0---494
CJEJ354242:2:Tyes-0224---665
CJEJ360109:0:Tyes--0---1250
CJEJ407148:0:Tno-0238---683
CKLU431943:1:Tyes-1384---0201
CMIC31964:2:Tyes---12422666-0
CMIC443906:2:Tyes---01385-999
CMUR243161:1:Tyes----0--
CNOV386415:0:Tyes-----20620
CPEL335992:0:Tyes-248--0904-
CPER195102:1:Tyes-1700---02458
CPER195103:0:Tno-1879---02586
CPER289380:3:Tyes-1596---02274
CPHY357809:0:Tyes-2481-3010-3359
CPNE115711:1:Tyes----0--
CPNE115713:0:Tno----0--
CPNE138677:0:Tno----0--
CPNE182082:0:Tno----0--
CPRO264201:0:Fyes----0--
CPSY167879:0:Tyes3481297010
CRUT413404:0:Tyes-0--1902753
CSAL290398:0:Tyes78178278301305662785
CSP501479:8:Fyes--0-961129-
CSP78:2:Tyes-24740-1768564-
CTEP194439:0:Tyes--0-487--
CTET212717:0:Tyes-1117---0-
CTRA471472:0:Tyes----0--
CTRA471473:0:Tno----0--
CVES412965:0:Tyes-0--1823696
CVIO243365:0:Tyes24411184302345145502859
DARO159087:0:Tyes97096987427759679740
DDES207559:0:Tyes-17851930--03629
DGEO319795:0:Tyes----0--
DGEO319795:1:Tyes--0----
DHAF138119:0:Tyes-2006---0501
DNOD246195:0:Tyes10196-592561690
DOLE96561:0:Tyes-18681762--20320
DPSY177439:2:Tyes-1469720-831195
DRAD243230:3:Tyes--0-264--
DRED349161:0:Tyes-1940---0241
DSHI398580:5:Tyes-01356-26341837-
DVUL882:1:Tyes-16461583--2230
ECAN269484:0:Tyes-0--118241-
ECAR218491:0:Tyes23815509
ECHA205920:0:Tyes-290--1420-
ECOL199310:0:Tno1110508134
ECOL316407:0:Tno1110508134
ECOL331111:6:Tno1211408143
ECOL362663:0:Tno1110508134
ECOL364106:1:Tno2120150182314
ECOL405955:2:Tyes650-38-
ECOL409438:6:Tyes1211609145
ECOL413997:0:Tno1110508134
ECOL439855:4:Tno239516010
ECOL469008:0:Tno23813509
ECOL481805:0:Tno23813509
ECOL585034:0:Tno1211609145
ECOL585035:0:Tno161510013189
ECOL585055:0:Tno1110508134
ECOL585056:2:Tno1211609145
ECOL585057:0:Tno2510177011
ECOL585397:0:Tno1817120152011
ECOL83334:0:Tno1110508134
ECOLI:0:Tno1110508134
ECOO157:0:Tno1171161110114119110
EFAE226185:3:Tyes---505-28740
EFER585054:1:Tyes1110508134
ELIT314225:0:Tyes-22802132-8310-
ERUM254945:0:Tyes-0--147275-
ERUM302409:0:Tno-0--148270-
ESP42895:1:Tyes1716110141910
FALN326424:0:Tyes--522906115-479
FJOH376686:0:Tyes--1411-0--
FMAG334413:1:Tyes-----079
FNOD381764:0:Tyes---619-4080
FNUC190304:0:Tyes-----01177
FPHI484022:1:Tyes365364--8201644
FRANT:0:Tno10641063--0779441
FSP106370:0:Tyes--348004288-353
FSP1855:0:Tyes--055026241--
FTUL351581:0:Tno413412--2922250
FTUL393011:0:Tno349348--2491850
FTUL393115:0:Tyes10451044--0768438
FTUL401614:0:Tyes01--285351548
FTUL418136:0:Tno01--10791015515
FTUL458234:0:Tno370369--2662030
GBET391165:0:Tyes-14081236-0532310
GFOR411154:0:Tyes--2055-0-1831
GKAU235909:1:Tyes-2894---0135
GMET269799:1:Tyes-0-902271131701478
GOXY290633:5:Tyes-6671512-01614866
GSUL243231:0:Tyes-3059-54044801702
GTHE420246:1:Tyes-1109---0115
GURA351605:0:Tyes-4087-3711372401855
GVIO251221:0:Tyes--627--3070
HARS204773:0:Tyes2113481353052022
HAUR316274:2:Tyes--0-618--
HCHE349521:0:Tyes9392607963
HDUC233412:0:Tyes785993--070622
HHAL349124:0:Tyes245-90607
HINF281310:0:Tyes11421141-135710230441
HINF374930:0:Tyes932933-79510484350
HINF71421:0:Tno14451446-128910190421
HMAR272569:8:Tyes----0--
HMOD498761:0:Tyes-1341--0134412
HMUK485914:1:Tyes----0--
HNEP81032:0:Tyes-29431675-01360795
HSAL478009:4:Tyes----0--
HSOM205914:1:Tyes107481-1494433700
HSOM228400:0:Tno9180-9676671198755
HSP64091:2:Tno----0--
HWAL362976:1:Tyes----0--
ILOI283942:0:Tyes348137010
JSP290400:1:Tyes-02312-2942645-
JSP375286:0:Tyes2113791384042262
KPNE272620:2:Tyes1211508143
KRAD266940:2:Fyes--19991615733-0
LACI272621:0:Tyes-371----0
LBIF355278:2:Tyes--1189-392-0
LBIF456481:2:Tno--839-0--
LBOR355276:1:Tyes--0-1513-401
LBOR355277:1:Tno--0-1243-2259
LBRE387344:2:Tyes-----340
LCAS321967:1:Tyes----08661489
LCHO395495:0:Tyes636213039726003262
LDEL321956:0:Tyes-----11370
LDEL390333:0:Tyes-----10930
LGAS324831:0:Tyes-----11990
LHEL405566:0:Tyes-335--1102-0
LINN272626:1:Tno-0---12961166
LINT189518:1:Tyes--0-2406-658
LINT267671:1:Tno--0-1354-2705
LINT363253:3:Tyes01551--49-
LJOH257314:0:Tyes-----12710
LLAC272622:5:Tyes---0-15952076
LLAC272623:0:Tyes---0-15441904
LMES203120:1:Tyes-422-1604--0
LMON169963:0:Tno-0---11991063
LMON265669:0:Tyes-0---1096945
LPLA220668:0:Tyes-----0484
LPNE272624:0:Tno13361337133901338871341
LPNE297245:1:Fno12481249125101250821253
LPNE297246:1:Fyes12321233123501234821237
LPNE400673:0:Tno0131677215935
LREU557436:0:Tyes-----0-
LSAK314315:0:Tyes---0-1059988
LSPH444177:1:Tyes-----04477
LWEL386043:0:Tyes-0---1073938
LXYL281090:0:Tyes----407-0
MABS561007:1:Tyes-2598-04463-3299
MAER449447:0:Tyes--3180-40120-
MAQU351348:2:Tyes23-2102060208
MAVI243243:0:Tyes-2754-04396-3507
MBOV233413:0:Tno-0-9071185-726
MBOV410289:0:Tno-2766-37070-3527
MCAP243233:0:Tyes84193-026691
MEXT419610:0:Tyes-29375-03137-
MFLA265072:0:Tyes82282177318368168260
MGIL350054:3:Tyes-3184-5580-4163
MLEP272631:0:Tyes-472-01509-1098
MLOT266835:2:Tyes-31460-1837707-
MMAG342108:0:Tyes-02724-64725053323
MMAR394221:0:Tyes-16690-881642-
MMAZ192952:0:Tyes-----0-
MPET420662:1:Tyes323521340015692298
MSME246196:0:Tyes-1163-45975359-0
MSP164756:1:Tno-1013-11914327-0
MSP164757:0:Tno-959-11894650-0
MSP189918:2:Tyes-1031-12104386-0
MSP266779:3:Tyes-15190-40288-
MSP400668:0:Tyes3637394303340
MSP409:2:Tyes-10831597-02705-
MSUC221988:0:Tyes822824-4573118200
MTBCDC:0:Tno-0-9771269-773
MTBRV:0:Tno-0-9031174-716
MTHE264732:0:Tyes-1025--234102357
MTUB336982:0:Tno-0-9141185-736
MTUB419947:0:Tyes-0-9271202-742
MVAN350058:0:Tyes-1337-04993-390
MXAN246197:0:Tyes-76662101241-2552
NARO279238:0:Tyes-0393-1934418629
NEUR228410:0:Tyes8868852074157317770250
NEUT335283:2:Tyes2186218538017545230308
NFAR247156:2:Tyes-3541-05359-477
NGON242231:0:Tyes0597143919535310271481
NHAM323097:2:Tyes-02026-27041639-
NMEN122586:0:Tno444110943656111914650
NMEN122587:0:Tyes733136909351379179145
NMEN272831:0:Tno3759774257698712740
NMEN374833:0:Tno0650135422466310151401
NMUL323848:3:Tyes154152266422060156763
NOCE323261:1:Tyes322216-06812218
NPHA348780:2:Tyes----0--
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