CANDIDATE ID: 311

CANDIDATE ID: 311

NUMBER OF GENES: 7
AVERAGE SCORE:    9.9900543e-1 (range=[0.0,1.0])
AVERAGE MINIMUM BLAST P-VAL:    1.0000000e+0

Gene List
List of organisms containing most genes from the group
    Phylogenetic tree highlighting these organisms (opens new page)
List of organisms containing very few or no genes from the group
List of organisms enriched for group
List of organisms depleted for group
Phylogenetic profile similarity with known pathways
Pairwise genome context scores
Pairwise Blast scores
Pathway or protein complex matches in target organism
Genome context matrix
    Genes and their orthologs in genome browser BioCyc pages




GENE LIST:

- G6581 (rluE) (b1135)
   Products of gene:
     - G6581-MONOMER (23S rRNA pseudouridine 2457 synthase)
       Reactions:
        rRNA  ->  rRNA containing pseudouridine

- G6580 (nudJ) (b1134)
   Products of gene:
     - G6580-MONOMER (HMP-PP hydrolase /thiamin pyrophosphate hydrolase [multifunctional])
       Reactions:
        GDP + H2O  ->  GMP + phosphate + H+
        4-amino-5-hydroxymethyl-2-methylpyrimidine-pyrophosphate + H2O  ->  hydroxymethylpyrimidine phosphate + phosphate + H+
        thiamine diphosphate + H2O  ->  thiamine-phosphate + phosphate + H+

- G6463 (clpS) (b0881)
   Products of gene:
     - G6463-MONOMER (specificity factor for ClpA-ClpP chaperone-protease complex)

- EG11345 (hflD) (b1132)
   Products of gene:
     - EG11345-MONOMER (lysogenization regulator)

- EG11344 (mnmA) (b1133)
   Products of gene:
     - EG11344-MONOMER (tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase)
       Reactions:
        uridine + L-cysteine + ATP  ->  2-thiouridine + L-alanine + AMP + diphosphate

- EG11111 (cspD) (b0880)
   Products of gene:
     - EG11111-MONOMER (DNA replication inhibitor)
     - CPLX0-3301 (DNA replication inhibitor)

- EG10489 (icd) (b1136)
   Products of gene:
     - ISOCITHASE-P (isocitrate dehydrogenase-P)
     - ISOCITDEH-SUBUNIT (Icd)
     - ISOCITHASE-CPLX (isocitrate dehydrogenase)
       Reactions:
        D-threo-isocitrate + NADP+  ->  NADPH + 2-oxoglutarate + CO2
         In pathways
         GLYCOLYSIS-TCA-GLYOX-BYPASS (superpathway of glycolysis, pyruvate dehydrogenase, TCA, and glyoxylate bypass)
         TCA-GLYOX-BYPASS (superpathway of glyoxylate bypass and TCA)
         ANARESP1-PWY (respiration (anaerobic))
         P105-PWY (P105-PWY)
         TCA (TCA cycle)
         REDCITCYC (REDCITCYC)
         PWY-5913 (PWY-5913)
         FERMENTATION-PWY (mixed acid fermentation)
         PWY-6549 (PWY-6549)



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ORGANISMS CONTAINING AT LEAST 6 GENES FROM THE GROUP:

Total number of orgs: 120
Effective number of orgs (counting one per cluster within 468 clusters): 72

Organism list
Homologs in each organism in the list
Features enriched in organism list


Follow (ncbi) link, when present, to find the set of organism features for each organism
Org ID  Org Name  # genes in group found in org  
YPSE349747 ncbi Yersinia pseudotuberculosis IP 317587
YPSE273123 ncbi Yersinia pseudotuberculosis IP 329537
YPES386656 ncbi Yersinia pestis Pestoides F7
YPES377628 ncbi Yersinia pestis Nepal5167
YPES360102 ncbi Yersinia pestis Antiqua7
YPES349746 ncbi Yersinia pestis Angola7
YPES214092 ncbi Yersinia pestis CO927
YPES187410 ncbi Yersinia pestis KIM 106
YENT393305 ncbi Yersinia enterocolitica enterocolitica 80817
XORY360094 ncbi Xanthomonas oryzae pv. oryzae PXO99A7
XORY342109 ncbi Xanthomonas oryzae pv. oryzae MAFF 3110187
XORY291331 ncbi Xanthomonas oryzae pv. oryzae KACC103317
XFAS160492 ncbi Xylella fastidiosa 9a5c6
XCAM487884 Xanthomonas campestris pv. paulliniae7
XCAM316273 ncbi Xanthomonas campestris pv. vesicatoria str. 85-107
XCAM314565 ncbi Xanthomonas campestris pv. campestris str. 80047
XCAM190485 ncbi Xanthomonas campestris pv. campestris str. ATCC 339137
XAXO190486 ncbi Xanthomonas axonopodis pv. citri str. 3067
TTUR377629 ncbi Teredinibacter turnerae T79016
TDEN292415 ncbi Thiobacillus denitrificans ATCC 252596
STYP99287 ncbi Salmonella enterica enterica serovar Typhimurium str. LT27
SSP94122 ncbi Shewanella sp. ANA-37
SSON300269 ncbi Shigella sonnei Ss0467
SSED425104 ncbi Shewanella sediminis HAW-EB37
SPRO399741 ncbi Serratia proteamaculans 5687
SPEA398579 ncbi Shewanella pealeana ATCC 7003457
SONE211586 ncbi Shewanella oneidensis MR-17
SLOI323850 ncbi Shewanella loihica PV-47
SHIGELLA ncbi Shigella flexneri 2a str. 2457T7
SHAL458817 ncbi Shewanella halifaxensis HAW-EB47
SFLE373384 ncbi Shigella flexneri 5 str. 84017
SFLE198214 ncbi Shigella flexneri 2a str. 3017
SENT454169 ncbi Salmonella enterica enterica serovar Heidelberg str. SL4767
SENT321314 ncbi Salmonella enterica enterica serovar Choleraesuis str. SC-B677
SENT295319 ncbi Salmonella enterica enterica serovar Paratyphi A str. ATCC 91507
SENT220341 ncbi Salmonella enterica enterica serovar Typhi str. CT187
SENT209261 ncbi Salmonella enterica enterica serovar Typhi str. Ty27
SDYS300267 ncbi Shigella dysenteriae Sd1977
SDEN318161 ncbi Shewanella denitrificans OS2176
SDEG203122 ncbi Saccharophagus degradans 2-406
SBOY300268 ncbi Shigella boydii Sb2277
SBAL402882 ncbi Shewanella baltica OS1857
SBAL399599 ncbi Shewanella baltica OS1957
RMET266264 ncbi Ralstonia metallidurans CH346
REUT381666 ncbi Ralstonia eutropha H166
REUT264198 ncbi Ralstonia eutropha JMP1346
PSYR223283 ncbi Pseudomonas syringae pv. tomato str. DC30007
PSYR205918 ncbi Pseudomonas syringae pv. syringae B728a6
PSTU379731 ncbi Pseudomonas stutzeri A15017
PPUT76869 ncbi Pseudomonas putida GB-17
PPUT351746 ncbi Pseudomonas putida F17
PPUT160488 ncbi Pseudomonas putida KT24407
PPRO298386 ncbi Photobacterium profundum SS96
PMUL272843 ncbi Pasteurella multocida multocida Pm706
PMEN399739 ncbi Pseudomonas mendocina ymp7
PLUM243265 ncbi Photorhabdus luminescens laumondii TTO17
PHAL326442 ncbi Pseudoalteromonas haloplanktis TAC1256
PFLU220664 ncbi Pseudomonas fluorescens Pf-57
PFLU216595 ncbi Pseudomonas fluorescens SBW257
PFLU205922 ncbi Pseudomonas fluorescens Pf0-17
PENT384676 ncbi Pseudomonas entomophila L487
PATL342610 ncbi Pseudoalteromonas atlantica T6c6
PAER208964 ncbi Pseudomonas aeruginosa PAO17
PAER208963 ncbi Pseudomonas aeruginosa UCBPP-PA147
NEUT335283 ncbi Nitrosomonas eutropha C916
MSUC221988 ncbi Mannheimia succiniciproducens MBEL55E6
MFLA265072 ncbi Methylobacillus flagellatus KT6
MCAP243233 ncbi Methylococcus capsulatus Bath6
MAQU351348 ncbi Marinobacter aquaeolei VT86
KPNE272620 ncbi Klebsiella pneumoniae pneumoniae MGH 785787
JSP375286 ncbi Janthinobacterium sp. Marseille6
ILOI283942 ncbi Idiomarina loihiensis L2TR6
HCHE349521 ncbi Hahella chejuensis KCTC 23967
HARS204773 ncbi Herminiimonas arsenicoxydans6
ESP42895 Enterobacter sp.7
EFER585054 ncbi Escherichia fergusonii ATCC 354697
ECOO157 ncbi Escherichia coli O157:H7 EDL9337
ECOL83334 Escherichia coli O157:H77
ECOL585397 ncbi Escherichia coli ED1a7
ECOL585057 ncbi Escherichia coli IAI397
ECOL585056 ncbi Escherichia coli UMN0267
ECOL585055 ncbi Escherichia coli 559897
ECOL585035 ncbi Escherichia coli S887
ECOL585034 ncbi Escherichia coli IAI17
ECOL481805 ncbi Escherichia coli ATCC 87397
ECOL469008 ncbi Escherichia coli BL21(DE3)7
ECOL439855 ncbi Escherichia coli SMS-3-57
ECOL413997 ncbi Escherichia coli B str. REL6067
ECOL409438 ncbi Escherichia coli SE117
ECOL405955 ncbi Escherichia coli APEC O16
ECOL364106 ncbi Escherichia coli UTI897
ECOL362663 ncbi Escherichia coli 5367
ECOL331111 ncbi Escherichia coli E24377A7
ECOL316407 ncbi Escherichia coli K-12 substr. W31107
ECOL199310 ncbi Escherichia coli CFT0737
ECAR218491 ncbi Pectobacterium atrosepticum SCRI10437
DARO159087 ncbi Dechloromonas aromatica RCB6
CSAL290398 ncbi Chromohalobacter salexigens DSM 30437
CPSY167879 ncbi Colwellia psychrerythraea 34H7
CJAP155077 Cellvibrio japonicus6
BVIE269482 ncbi Burkholderia vietnamiensis G46
BTHA271848 ncbi Burkholderia thailandensis E2646
BSP36773 Burkholderia sp.6
BPSE320372 ncbi Burkholderia pseudomallei 1710b6
BPSE272560 ncbi Burkholderia pseudomallei K962436
BMAL320389 ncbi Burkholderia mallei NCTC 102476
BMAL320388 ncbi Burkholderia mallei SAVP16
BMAL243160 ncbi Burkholderia mallei ATCC 233446
BCEN331272 ncbi Burkholderia cenocepacia HI24246
BCEN331271 ncbi Burkholderia cenocepacia AU 10546
BAMB398577 ncbi Burkholderia ambifaria MC40-66
BAMB339670 ncbi Burkholderia ambifaria AMMD6
ASP76114 ncbi Aromatoleum aromaticum EbN16
ASP62977 ncbi Acinetobacter sp. ADP16
ASP62928 ncbi Azoarcus sp. BH726
ASAL382245 ncbi Aeromonas salmonicida salmonicida A4497
AHYD196024 Aeromonas hydrophila dhakensis7
AFER243159 ncbi Acidithiobacillus ferrooxidans ATCC 232706
AEHR187272 ncbi Alkalilimnicola ehrlichii MLHE-16
ABOR393595 ncbi Alcanivorax borkumensis SK27


Names of the homologs of the genes in the group in each of these orgs
  G6581   G6580   G6463   EG11345   EG11344   EG11111   EG10489   
YPSE349747 YPSIP31758_1614YPSIP31758_1613YPSIP31758_2607YPSIP31758_1611YPSIP31758_1612YPSIP31758_2609YPSIP31758_1615
YPSE273123 YPTB2428YPTB2429YPTB1393YPTB2431YPTB2430YPTB1392YPTB2427
YPES386656 YPDSF_1808YPDSF_1809YPDSF_2328YPDSF_1811YPDSF_1810YPDSF_2330YPDSF_1807
YPES377628 YPN_1991YPN_1992YPN_2613YPN_1994YPN_1993YPN_2614YPN_1990
YPES360102 YPA_1884YPA_1885YPA_0657YPA_1887YPA_1886YPA_0656YPA_1883
YPES349746 YPANGOLA_A2849YPANGOLA_A2850YPANGOLA_A1600YPANGOLA_A2852YPANGOLA_A2851YPANGOLA_A1599YPANGOLA_A2848
YPES214092 YPO1640YPO1639YPO1367YPO1637YPO1638YPO1366YPO1641
YPES187410 Y1801Y1800Y2810Y1798Y1799Y1802
YENT393305 YE1724YE1723YE1517YE1721YE1722YE1516YE1725
XORY360094 XOOORF_5144XOOORF_2787XOOORF_2786XOOORF_2789XOOORF_2788XOOORF_3133XOOORF_4334
XORY342109 XOO4268XOO2414XOO2413XOO2416XOO2415XOO1765XOO0926
XORY291331 XOO4531XOO2555XOO2554XOO2557XOO2556XOO1870XOO1024
XFAS160492 XF1441XF1442XF1439XF1440XF2352XF2596
XCAM487884 XCC-B100_0298XCC-B100_2264XCC-B100_2265XCC-B100_2262XCC-B100_2263XCC-B100_3017XCC-B100_3384
XCAM316273 XCAORF_4237XCAORF_2244XCAORF_2245XCAORF_2242XCAORF_2243XCAORF_1541XCAORF_1165
XCAM314565 XC_0283XC_2220XC_2219XC_2222XC_2221XC_2955XC_3268
XCAM190485 XCC0273XCC1965XCC1966XCC1963XCC1964XCC1286XCC0967
XAXO190486 XAC0290XAC1999XAC2000XAC1997XAC1998XAC1337XAC1046
TTUR377629 TERTU_1959TERTU_1958TERTU_1962TERTU_1750TERTU_1751TERTU_1961
TDEN292415 TBD_0853TBD_0852TBD_1236TBD_0851TBD_0855TBD_0854
STYP99287 STM1237STM1235STM0944STM1233STM1234STM0943STM1238
SSP94122 SHEWANA3_1749SHEWANA3_1748SHEWANA3_1752SHEWANA3_1746SHEWANA3_1747SHEWANA3_1751SHEWANA3_2890
SSON300269 SSO_1153SSO_1152SSO_0882SSO_1150SSO_1151SSO_0867SSO_1154
SSED425104 SSED_1882SSED_2716SSED_1885SSED_1880SSED_1881SSED_1884SSED_3318
SPRO399741 SPRO_2024SPRO_2023SPRO_1673SPRO_2021SPRO_2022SPRO_1672SPRO_2025
SPEA398579 SPEA_2536SPEA_2537SPEA_2533SPEA_2539SPEA_2538SPEA_2534SPEA_2980
SONE211586 SO_2630SO_2631SO_2627SO_2634SO_2633SO_2628SO_1538
SLOI323850 SHEW_1562SHEW_1561SHEW_1565SHEW_1559SHEW_1560SHEW_1564SHEW_2760
SHIGELLA YMFCS1236YLJAYCFCYCFBCSPDICDA
SHAL458817 SHAL_1717SHAL_1716SHAL_1720SHAL_1714SHAL_1715SHAL_1719SHAL_3069
SFLE373384 SFV_1170SFV_1169SFV_0872SFV_1167SFV_1168SFV_0871SFV_1171
SFLE198214 AAN42771.1AAN42770.1AAN42474.1AAN42768.1AAN42769.1AAN42473.1AAN42772.1
SENT454169 SEHA_C1354SEHA_C1352SEHA_C1043SEHA_C1350SEHA_C1351SEHA_C1042SEHA_C1355
SENT321314 SCH_1188SCH_1186SCH_0899SCH_1184SCH_1185SCH_0898SCH_1189
SENT295319 SPA1613SPA1615SPA1855SPA1617SPA1616SPA1856SPA1612
SENT220341 STY1277STY1275STY0942STY1273STY1274STY0939STY1278
SENT209261 T1683T1685T1989T1687T1686T1990T1682
SDYS300267 SDY_2017SDY_2018SDY_2380SDY_2020SDY_2019SDY_2381SDY_2016
SDEN318161 SDEN_1830SDEN_1833SDEN_1827SDEN_1828SDEN_1832SDEN_2561
SDEG203122 SDE_1683SDE_1682SDE_1686SDE_1676SDE_1677SDE_1685
SBOY300268 SBO_1904SBO_1905SBO_0814SBO_1907SBO_1906SBO_0813SBO_1903
SBAL402882 SHEW185_2469SHEW185_2470SHEW185_2466SHEW185_2472SHEW185_2471SHEW185_2467SHEW185_1354
SBAL399599 SBAL195_2589SBAL195_2590SBAL195_2586SBAL195_2592SBAL195_2591SBAL195_2587SBAL195_1393
RMET266264 RMET_2896RMET_2959RMET_2893RMET_2958RMET_5818RMET_2895
REUT381666 H16_A3057H16_A3127H16_A3053H16_A3126H16_B0002H16_A3056
REUT264198 REUT_A2757REUT_A2822REUT_A2753REUT_A2821REUT_C6028REUT_A2756
PSYR223283 PSPTO_4794PSPTO_3357PSPTO_3354PSPTO_3359PSPTO_3358PSPTO_3355PSPTO_3205
PSYR205918 PSYR_4336PSYR_3189PSYR_3184PSYR_3191PSYR_3190PSYR_3185
PSTU379731 PST_3719PST_2303PST_2299PST_2305PST_2304PST_2300PST_2301
PPUT76869 PPUTGB1_4832PPUTGB1_3618PPUTGB1_3614PPUTGB1_3620PPUTGB1_3619PPUTGB1_3615PPUTGB1_3616
PPUT351746 PPUT_4654PPUT_1820PPUT_1824PPUT_1818PPUT_1819PPUT_1823PPUT_1822
PPUT160488 PP_4778PP_4013PP_4009PP_4015PP_4014PP_4010PP_4011
PPRO298386 PBPRA1148PBPRA1151PBPRA1146PBPRA1147PBPRA1150PBPRA1149
PMUL272843 PM1605PM1604PM1850PM1336PM0481PM1606
PMEN399739 PMEN_3745PMEN_2398PMEN_2394PMEN_2400PMEN_2399PMEN_2395PMEN_2396
PLUM243265 PLU2802PLU2803PLU1593PLU2805PLU2804PLU1592PLU2801
PHAL326442 PSHAA1688PSHAA1725PSHAA1691PSHAA1690PSHAA1726PSHAA1303
PFLU220664 PFL_5423PFL_3890PFL_3886PFL_3892PFL_3891PFL_3887PFL_3888
PFLU216595 PFLU5395PFLU3810PFLU3806PFLU3812PFLU3811PFLU3807PFLU3808
PFLU205922 PFL_4941PFL_3595PFL_3591PFL_3597PFL_3596PFL_3592PFL_3593
PENT384676 PSEEN4798PSEEN2201PSEEN2206PSEEN2199PSEEN2200PSEEN2205PSEEN2204
PATL342610 PATL_2378PATL_2375PATL_2380PATL_2379PATL_2376PATL_3197
PAER208964 PA3968PA2625PA2621PA2627PA2626PA2622PA2623
PAER208963 PA14_12540PA14_30160PA14_30210PA14_30140PA14_30150PA14_30200PA14_30190
NEUT335283 NEUT_2203NEUT_0259NEUT_2047NEUT_2336NEUT_2046NEUT_2045
MSUC221988 MS2342MS2341MS0298MS0301MS1095MS2370
MFLA265072 MFLA_2138MFLA_2114MFLA_0509MFLA_2115MFLA_2140MFLA_2139
MCAP243233 MCA_0548MCA_1786MCA_1788MCA_0201MCA_1785MCA_3071
MAQU351348 MAQU_1760MAQU_1761MAQU_1758MAQU_1763MAQU_1762MAQU_1759
KPNE272620 GKPORF_B0061GKPORF_B0060GKPORF_B5353GKPORF_B0058GKPORF_B0059GKPORF_B5352GKPORF_B0062
JSP375286 MMA_2517MMA_0374MMA_2515MMA_0373MMA_2516MMA_3499
ILOI283942 IL1309IL0675IL1311IL1310IL0676IL0861
HCHE349521 HCH_02335HCH_02334HCH_02338HCH_02332HCH_02333HCH_02337HCH_02336
HARS204773 HEAR2449HEAR0327HEAR2446HEAR0326HEAR2448HEAR3270
ESP42895 ENT638_1648ENT638_1647ENT638_1398ENT638_1645ENT638_1646ENT638_1397ENT638_1649
EFER585054 EFER_1795EFER_1796EFER_1029EFER_1798EFER_1797EFER_1028EFER_1794
ECOO157 YMFCZ1863YLJAYCFCYCFBCSPDICDA
ECOL83334 ECS1607ECS1606ECS0967ECS1604ECS1605ECS0966ECS1608
ECOL585397 ECED1_1279ECED1_1278ECED1_0848ECED1_1276ECED1_1277ECED1_0847ECED1_1280
ECOL585057 ECIAI39_2002ECIAI39_2003ECIAI39_2270ECIAI39_2005ECIAI39_2004ECIAI39_2272ECIAI39_1995
ECOL585056 ECUMN_1379ECUMN_1378ECUMN_1076ECUMN_1376ECUMN_1377ECUMN_1075ECUMN_1380
ECOL585055 EC55989_1248EC55989_1247EC55989_0926EC55989_1245EC55989_1246EC55989_0925EC55989_1249
ECOL585035 ECS88_1150ECS88_1149ECS88_0903ECS88_1147ECS88_1148ECS88_0902ECS88_1151
ECOL585034 ECIAI1_1173ECIAI1_1172ECIAI1_0921ECIAI1_1170ECIAI1_1171ECIAI1_0920ECIAI1_1174
ECOL481805 ECOLC_2468ECOLC_2469ECOLC_2715ECOLC_2471ECOLC_2470ECOLC_2716ECOLC_2467
ECOL469008 ECBD_2464ECBD_2465ECBD_2713ECBD_2467ECBD_2466ECBD_2714ECBD_2463
ECOL439855 ECSMS35_1990ECSMS35_1991ECSMS35_2279ECSMS35_1993ECSMS35_1992ECSMS35_2280ECSMS35_1989
ECOL413997 ECB_01133ECB_01132ECB_00886ECB_01130ECB_01131ECB_00885ECB_01134
ECOL409438 ECSE_1201ECSE_1200ECSE_0939ECSE_1198ECSE_1199ECSE_0938ECSE_1202
ECOL405955 APECO1_217APECO1_216APECO1_1214APECO1_214APECO1_215APECO1_218
ECOL364106 UTI89_C1264UTI89_C1263UTI89_C0887UTI89_C1261UTI89_C1262UTI89_C0885UTI89_C1266
ECOL362663 ECP_1130ECP_1129ECP_0896ECP_1127ECP_1128ECP_0895ECP_1131
ECOL331111 ECE24377A_1298ECE24377A_1297ECE24377A_0954ECE24377A_1295ECE24377A_1296ECE24377A_0953ECE24377A_1299
ECOL316407 ECK1121:JW1121:B1135ECK1120:JW1120:B1134ECK0872:JW0865:B0881ECK1118:JW5165:B1132ECK1119:JW1119:B1133ECK0871:JW0864:B0880ECK1122:JW1122:B1136
ECOL199310 C1514C1513C1018C1511C1512C1017C1517
ECAR218491 ECA2440ECA2441ECA2657ECA2443ECA2442ECA2659ECA2439
DARO159087 DARO_3254DARO_3293DARO_3094DARO_3291DARO_3093DARO_3119
CSAL290398 CSAL_2442CSAL_2443CSAL_2441CSAL_2445CSAL_2444CSAL_1668CSAL_1434
CPSY167879 CPS_2898CPS_2899CPS_2894CPS_2901CPS_2900CPS_2895CPS_2896
CJAP155077 CJA_2572CJA_2484CJA_2569CJA_2491CJA_2490CJA_2570
BVIE269482 BCEP1808_2603BCEP1808_0664BCEP1808_2597BCEP1808_0663BCEP1808_2598BCEP1808_2602
BTHA271848 BTH_I0758BTH_I1258BTH_I0762BTH_I1257BTH_I2936BTH_I0759
BSP36773 BCEP18194_A5857BCEP18194_A3785BCEP18194_A5851BCEP18194_A3784BCEP18194_A5852BCEP18194_A5856
BPSE320372 BURPS1710B_A1168BURPS1710B_A3670BURPS1710B_A1173BURPS1710B_A3671BURPS1710B_A3897BURPS1710B_A1170
BPSE272560 BPSL0895BPSL2888BPSL0898ABPSL2889BPSL3079BPSL0896
BMAL320389 BMA10247_0134BMA10247_2545BMA10247_2157BMA10247_2544BMA10247_3184BMA10247_0132
BMAL320388 BMASAVP1_A0685BMASAVP1_A0279BMASAVP1_A0575BMASAVP1_A0278BMASAVP1_A0574BMASAVP1_A0683
BMAL243160 BMA_0485BMA_2365BMA_2280BMA_2364BMA_2791BMA_0486
BCEN331272 BCEN2424_2525BCEN2424_0699BCEN2424_2519BCEN2424_0698BCEN2424_2520BCEN2424_2524
BCEN331271 BCEN_1914BCEN_0215BCEN_1908BCEN_0214BCEN_1909BCEN_1913
BAMB398577 BAMMC406_2444BAMMC406_0618BAMMC406_2437BAMMC406_0617BAMMC406_2438BAMMC406_2443
BAMB339670 BAMB_2573BAMB_0592BAMB_2567BAMB_0591BAMB_0408BAMB_2572
ASP76114 EBA713EBA990EBD83EBA986EBC12EBA829
ASP62977 ACIAD1189ACIAD1222ACIAD1362ACIAD1220ACIAD1221ACIAD1190
ASP62928 AZO1101AZO2774AZO1133AZO2772AZO1134AZO1147
ASAL382245 ASA_1393ASA_1392ASA_2447ASA_1390ASA_1391ASA_2448ASA_2942
AHYD196024 AHA_1417AHA_1416AHA_1856AHA_1414AHA_1415AHA_1855AHA_1436
AFER243159 AFE_0923AFE_2517AFE_2123AFE_2360AFE_2450AFE_2613
AEHR187272 MLG_1089MLG_1450MLG_1448MLG_1452MLG_1451MLG_0262
ABOR393595 ABO_1280ABO_1276ABO_1284ABO_1274ABO_1275ABO_1283ABO_1282


Organism features enriched in list (features available for 114 out of the 120 orgs in the list)
Feature    Pvalue       Num occurrences in list  Total num occurrences  
Arrangment:Chains 0.0000305592
Arrangment:Pairs 0.006396931112
Disease:Bubonic_plague 0.000050266
Disease:Dysentery 0.000050266
Disease:Gastroenteritis 0.0046689713
Disease:Glanders_and_pneumonia 0.007318733
Disease:Rice_bacterial_blight_disease 0.007318733
Endospores:No 0.000054524211
GC_Content_Range4:0-40 1.344e-241213
GC_Content_Range4:40-60 2.782e-1175224
GC_Content_Range4:60-100 0.006827838145
GC_Content_Range7:30-40 8.534e-181166
GC_Content_Range7:50-60 5.473e-1147107
GC_Content_Range7:60-70 0.001649538134
Genome_Size_Range5:2-4 2.729e-815197
Genome_Size_Range5:4-6 5.124e-1977184
Genome_Size_Range5:6-10 6.601e-62247
Genome_Size_Range9:2-3 0.00001038120
Genome_Size_Range9:3-4 0.0044619777
Genome_Size_Range9:4-5 3.232e-63696
Genome_Size_Range9:5-6 1.670e-104188
Genome_Size_Range9:6-8 3.340e-72138
Gram_Stain:Gram_Neg 8.643e-21106333
Habitat:Multiple 0.001186348178
Motility:No 3.845e-106151
Motility:Yes 1.345e-1387267
Oxygen_Req:Anaerobic 9.443e-92102
Oxygen_Req:Facultative 1.332e-1069201
Pathogenic_in:No 0.000169928226
Pathogenic_in:Plant 0.0004762915
Pathogenic_in:Rice 0.007318733
Shape:Coccus 1.074e-6282
Shape:Rod 1.004e-18106347
Temp._range:Mesophilic 0.0035698102473
Temp._range:Thermophilic 0.0034864135



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ORGANISMS CONTAINING AT MOST 1 GENES FROM THE GROUP:

Total number of orgs: 165
Effective number of orgs (counting one per cluster within 468 clusters): 144

Organism list
Homologs in each organism in the list
Features enriched in organism list


Follow (ncbi) link, when present, to find the set of organism features for each organism
Org ID  Org Name  # genes in group found in org  
XAUT78245 ncbi Xanthobacter autotrophicus Py21
WPIP955 Wolbachia pipientis1
WPIP80849 Wolbachia endosymbiont of Brugia malayi1
UURE95667 Ureaplasma urealyticum serovar 131
UURE95664 Ureaplasma urealyticum serovar 101
UPAR505682 ncbi Ureaplasma parvum serovar 3 str. ATCC 278151
UMET351160 ncbi uncultured methanogenic archaeon RC-I1
TWHI218496 ncbi Tropheryma whipplei TW08/270
TWHI203267 ncbi Tropheryma whipplei Twist0
TVOL273116 ncbi Thermoplasma volcanium GSS11
TSP28240 Thermotoga sp.1
TPET390874 ncbi Thermotoga petrophila RKU-11
TPEN368408 ncbi Thermofilum pendens Hrk 51
TPAL243276 ncbi Treponema pallidum pallidum Nichols0
TMAR243274 ncbi Thermotoga maritima MSB81
TLET416591 ncbi Thermotoga lettingae TMO1
TKOD69014 ncbi Thermococcus kodakarensis KOD10
TDEN326298 ncbi Sulfurimonas denitrificans DSM 12511
TACI273075 ncbi Thermoplasma acidophilum DSM 17281
SSP387093 ncbi Sulfurovum sp. NBC37-11
SPYO370551 ncbi Streptococcus pyogenes MGAS94291
SPYO293653 ncbi Streptococcus pyogenes MGAS50051
SPYO193567 ncbi Streptococcus pyogenes SSI-11
SPYO186103 ncbi Streptococcus pyogenes MGAS82321
SPYO160490 ncbi Streptococcus pyogenes M1 GAS1
SMEL266834 ncbi Sinorhizobium meliloti 10211
SMED366394 ncbi Sinorhizobium medicae WSM4191
SMAR399550 ncbi Staphylothermus marinus F11
RTYP257363 ncbi Rickettsia typhi Wilmington1
RRIC452659 ncbi Rickettsia rickettsii Iowa1
RRIC392021 ncbi Rickettsia rickettsii Sheila Smith1
RPRO272947 ncbi Rickettsia prowazekii Madrid E1
RPAL316058 ncbi Rhodopseudomonas palustris HaA21
RPAL316057 ncbi Rhodopseudomonas palustris BisB51
RPAL316056 ncbi Rhodopseudomonas palustris BisB181
RPAL316055 ncbi Rhodopseudomonas palustris BisA531
RMAS416276 ncbi Rickettsia massiliae MTU51
RAKA293614 ncbi Rickettsia akari Hartford1
PTOR263820 ncbi Picrophilus torridus DSM 97901
PMAR93060 ncbi Prochlorococcus marinus MIT 92151
PMAR74546 ncbi Prochlorococcus marinus MIT 93121
PMAR59920 ncbi Prochlorococcus marinus NATL2A1
PMAR167555 ncbi Prochlorococcus marinus NATL1A1
PMAR167546 ncbi Prochlorococcus marinus MIT 93011
PMAR167542 ncbi Prochlorococcus marinus MIT 95151
PMAR167540 Prochlorococcus marinus pastoris MED4ax1
PMAR146891 ncbi Prochlorococcus marinus AS96011
PLUT319225 ncbi Chlorobium luteolum DSM 2731
PINT246198 Prevotella intermedia 170
PHOR70601 ncbi Pyrococcus horikoshii OT30
PGIN242619 ncbi Porphyromonas gingivalis W830
PFUR186497 ncbi Pyrococcus furiosus DSM 36381
PAST100379 Onion yellows phytoplasma1
PACN267747 ncbi Propionibacterium acnes KPA1712021
PABY272844 ncbi Pyrococcus abyssi GE50
OTSU357244 ncbi Orientia tsutsugamushi Boryong1
NSP387092 ncbi Nitratiruptor sp. SB155-21
NSEN222891 ncbi Neorickettsia sennetsu Miyayama1
NPHA348780 ncbi Natronomonas pharaonis DSM 21601
MVAN350058 ncbi Mycobacterium vanbaalenii PYR-11
MTHE349307 ncbi Methanosaeta thermophila PT1
MSYN262723 ncbi Mycoplasma synoviae 531
MSTA339860 ncbi Methanosphaera stadtmanae DSM 30911
MSP266779 ncbi Chelativorans sp. BNC11
MSME246196 ncbi Mycobacterium smegmatis MC2 1551
MSED399549 ncbi Metallosphaera sedula DSM 53481
MPUL272635 ncbi Mycoplasma pulmonis UAB CTIP1
MPNE272634 ncbi Mycoplasma pneumoniae M1290
MPEN272633 ncbi Mycoplasma penetrans HF-21
MMYC272632 ncbi Mycoplasma mycoides mycoides SC str. PG11
MMOB267748 ncbi Mycoplasma mobile 163K1
MMAR444158 ncbi Methanococcus maripaludis C61
MMAR426368 ncbi Methanococcus maripaludis C71
MMAR402880 ncbi Methanococcus maripaludis C51
MMAR394221 ncbi Maricaulis maris MCS101
MMAR368407 ncbi Methanoculleus marisnigri JR11
MMAR267377 ncbi Methanococcus maripaludis S21
MLEP272631 ncbi Mycobacterium leprae TN1
MLAB410358 ncbi Methanocorpusculum labreanum Z1
MKAN190192 ncbi Methanopyrus kandleri AV191
MJAN243232 ncbi Methanocaldococcus jannaschii DSM 26611
MHYO295358 ncbi Mycoplasma hyopneumoniae 2321
MHYO262722 ncbi Mycoplasma hyopneumoniae 74481
MHYO262719 ncbi Mycoplasma hyopneumoniae J1
MHUN323259 ncbi Methanospirillum hungatei JF-11
MGIL350054 ncbi Mycobacterium gilvum PYR-GCK1
MGEN243273 ncbi Mycoplasma genitalium G371
MFLO265311 ncbi Mesoplasma florum L11
MEXT419610 ncbi Methylobacterium extorquens PA11
MCAP340047 ncbi Mycoplasma capricolum capricolum ATCC 273431
MBUR259564 ncbi Methanococcoides burtonii DSM 62421
MART243272 ncbi Mycoplasma arthritidis 158L3-11
MAEO419665 ncbi Methanococcus aeolicus Nankai-31
LXYL281090 ncbi Leifsonia xyli xyli CTCB071
LJOH257314 ncbi Lactobacillus johnsonii NCC 5331
LDEL321956 ncbi Lactobacillus delbrueckii bulgaricus ATCC BAA-3651
HWAL362976 ncbi Haloquadratum walsbyi DSM 167901
HSP64091 ncbi Halobacterium sp. NRC-11
HSAL478009 ncbi Halobacterium salinarum R11
HMUK485914 ncbi Halomicrobium mukohataei DSM 122861
HMAR272569 ncbi Haloarcula marismortui ATCC 430491
HHEP235279 ncbi Helicobacter hepaticus ATCC 514491
HBUT415426 ncbi Hyperthermus butylicus DSM 54561
FNOD381764 ncbi Fervidobacterium nodosum Rt17-B11
FMAG334413 ncbi Finegoldia magna ATCC 293281
ERUM302409 ncbi Ehrlichia ruminantium Gardel1
ERUM254945 ncbi Ehrlichia ruminantium Welgevonden1
ECHA205920 ncbi Ehrlichia chaffeensis Arkansas1
ECAN269484 ncbi Ehrlichia canis Jake1
DSHI398580 ncbi Dinoroseobacter shibae DFL 121
CTRA471473 ncbi Chlamydia trachomatis L2b/UCH-1/proctitis1
CTRA471472 ncbi Chlamydia trachomatis 434/Bu1
CTEP194439 ncbi Chlorobium tepidum TLS0
CSUL444179 ncbi Candidatus Sulcia muelleri GWSS0
CSP78 Caulobacter sp.1
CPNE182082 ncbi Chlamydophila pneumoniae TW-1831
CPNE138677 ncbi Chlamydophila pneumoniae J1381
CPNE115713 ncbi Chlamydophila pneumoniae CWL0291
CPNE115711 ncbi Chlamydophila pneumoniae AR391
CPEL335992 ncbi Candidatus Pelagibacter ubique HTCC10620
CMUR243161 ncbi Chlamydia muridarum Nigg1
CMIC443906 ncbi Clavibacter michiganensis michiganensis NCPPB 3821
CMIC31964 ncbi Clavibacter michiganensis sepedonicus1
CMET456442 ncbi Candidatus Methanoregula boonei 6A80
CMAQ397948 ncbi Caldivirga maquilingensis IC-1671
CJEJ407148 ncbi Campylobacter jejuni jejuni 811161
CJEJ360109 ncbi Campylobacter jejuni doylei 269.971
CJEJ354242 ncbi Campylobacter jejuni jejuni 81-1761
CJEJ195099 ncbi Campylobacter jejuni RM12211
CJEJ192222 ncbi Campylobacter jejuni jejuni NCTC 111681
CJEI306537 ncbi Corynebacterium jeikeium K4111
CHUT269798 ncbi Cytophaga hutchinsonii ATCC 334060
CHOM360107 ncbi Campylobacter hominis ATCC BAA-3811
CGLU196627 ncbi Corynebacterium glutamicum ATCC 130321
CFET360106 ncbi Campylobacter fetus fetus 82-401
CFEL264202 ncbi Chlamydophila felis Fe/C-561
CEFF196164 ncbi Corynebacterium efficiens YS-3141
CDIP257309 ncbi Corynebacterium diphtheriae NCTC 131291
CCUR360105 ncbi Campylobacter curvus 525.920
CCON360104 ncbi Campylobacter concisus 138260
CCHL340177 ncbi Chlorobium chlorochromatii CaD31
CCAV227941 ncbi Chlamydophila caviae GPIC1
CBLO203907 ncbi Candidatus Blochmannia floridanus1
CABO218497 ncbi Chlamydophila abortus S26/31
BTUR314724 ncbi Borrelia turicatae 91E1350
BTRI382640 ncbi Bartonella tribocorum CIP 1054761
BSP376 Bradyrhizobium sp.1
BQUI283165 ncbi Bartonella quintana Toulouse1
BMEL224914 ncbi Brucella melitensis bv. 1 str. 16M1
BLON206672 ncbi Bifidobacterium longum NCC27051
BJAP224911 ncbi Bradyrhizobium japonicum USDA 1101
BHER314723 ncbi Borrelia hermsii DAH0
BHEN283166 ncbi Bartonella henselae Houston-11
BGAR290434 ncbi Borrelia garinii PBi1
BBUR224326 ncbi Borrelia burgdorferi B311
BBAC360095 ncbi Bartonella bacilliformis KC5831
BAFZ390236 ncbi Borrelia afzelii PKo1
AYEL322098 ncbi Aster yellows witches-broom phytoplasma AYWB1
AURANTIMONAS Aurantimonas manganoxydans SI85-9A10
APHA212042 ncbi Anaplasma phagocytophilum HZ1
AMAR234826 ncbi Anaplasma marginale St. Maries1
ALAI441768 ncbi Acholeplasma laidlawii PG-8A1
AFUL224325 ncbi Archaeoglobus fulgidus DSM 43041
ACAU438753 ncbi Azorhizobium caulinodans ORS 5711
AAUR290340 ncbi Arthrobacter aurescens TC11


Names of the homologs of the genes in the group in each of these orgs
  G6581   G6580   G6463   EG11345   EG11344   EG11111   EG10489   
XAUT78245 XAUT_4537
WPIP955 WD_0791
WPIP80849 WB_0551
UURE95667 UU402
UURE95664 UUR10_0445
UPAR505682 UPA3_0418
UMET351160 RCIX1801
TWHI218496
TWHI203267
TVOL273116 TVN0195
TSP28240 TRQ2_0684
TPET390874 TPET_0660
TPEN368408 TPEN_1656
TPAL243276
TMAR243274 TM_0264
TLET416591 TLET_1728
TKOD69014
TDEN326298 TMDEN_0458
TACI273075 TA0117
SSP387093 SUN_2066
SPYO370551 MGAS9429_SPY1851
SPYO293653 M5005_SPY1840
SPYO193567 SPS1836
SPYO186103 SPYM18_2222
SPYO160490 SPY2188
SMEL266834 SMC02110
SMED366394 SMED_1116
SMAR399550 SMAR_1194
RTYP257363 RT0256
RRIC452659 RRIOWA_0425
RRIC392021 A1G_02020
RPRO272947 RP265
RPAL316058 RPB_2395
RPAL316057 RPD_3056
RPAL316056 RPC_3325
RPAL316055 RPE_3405
RMAS416276 RMA_0358
RAKA293614 A1C_01920
PTOR263820 PTO0168
PMAR93060 P9215_18691
PMAR74546 PMT9312_1688
PMAR59920 PMN2A_1170
PMAR167555 NATL1_20451
PMAR167546 P9301ORF_1824
PMAR167542 P9515ORF_1860
PMAR167540 PMM1596
PMAR146891 A9601_18051
PLUT319225 PLUT_0318
PINT246198
PHOR70601
PGIN242619
PFUR186497 PF0202
PAST100379 PAM125
PACN267747 PPA1385
PABY272844
OTSU357244 OTBS_0842
NSP387092 NIS_0379
NSEN222891 NSE_0172
NPHA348780 NP2430A
MVAN350058 MVAN_1040
MTHE349307 MTHE_0025
MSYN262723 MS53_0375
MSTA339860 MSP_0674
MSP266779 MESO_1372
MSME246196 MSMEG_6159
MSED399549 MSED_0703
MPUL272635 MYPU_5580
MPNE272634
MPEN272633 MYPE8250
MMYC272632 MSC_0447
MMOB267748 MMOB4400
MMAR444158 MMARC6_0353
MMAR426368 MMARC7_1558
MMAR402880 MMARC5_1068
MMAR394221 MMAR10_1285
MMAR368407 MEMAR_0637
MMAR267377 MMP0539
MLEP272631 ML0198
MLAB410358 MLAB_0235
MKAN190192 MK1215
MJAN243232 MJ_0720
MHYO295358 MHP433
MHYO262722 MHP7448_0430
MHYO262719 MHJ_0428
MHUN323259 MHUN_2363
MGIL350054 MFLV_1392
MGEN243273 MG_295
MFLO265311 MFL412
MEXT419610 MEXT_4801
MCAP340047 MCAP_0523
MBUR259564 MBUR_1073
MART243272 MART0166
MAEO419665 MAEO_1416
LXYL281090 LXX05710
LJOH257314 LJ_0986
LDEL321956 LBUL_0688
HWAL362976 HQ3212A
HSP64091 VNG1873G
HSAL478009 OE3634F
HMUK485914 HMUK_1506
HMAR272569 RRNAC3419
HHEP235279 HH_1565
HBUT415426 HBUT_1424
FNOD381764 FNOD_1732
FMAG334413 FMG_1586
ERUM302409 ERGA_CDS_08940
ERUM254945 ERWE_CDS_09040
ECHA205920 ECH_1114
ECAN269484 ECAJ_0890
DSHI398580 DSHI_2908
CTRA471473 CTLON_0535
CTRA471472 CTL0539
CTEP194439
CSUL444179
CSP78 CAUL_3135
CPNE182082 CPB0453
CPNE138677 CPJ0438
CPNE115713 CPN0438
CPNE115711 CP_0315
CPEL335992
CMUR243161 TC_0560
CMIC443906 CMM_1611
CMIC31964 CMS1592
CMET456442
CMAQ397948 CMAQ_1738
CJEJ407148 C8J_1048
CJEJ360109 JJD26997_0615
CJEJ354242 CJJ81176_1125
CJEJ195099 CJE_1250
CJEJ192222 CJ1107
CJEI306537 JK1955
CHUT269798
CHOM360107 CHAB381_1113
CGLU196627 CG1615
CFET360106 CFF8240_0710
CFEL264202 CF0653
CEFF196164 CE1383
CDIP257309 DIP0320
CCUR360105
CCON360104
CCHL340177 CAG_0254
CCAV227941 CCA_00354
CBLO203907 BFL392
CABO218497 CAB345
BTUR314724
BTRI382640 BT_0907
BSP376 BRADO4546
BQUI283165 BQ07060
BMEL224914 BMEI0815
BLON206672 BL1218
BJAP224911 BLL5154
BHER314723
BHEN283166 BH06170
BGAR290434 BG0705
BBUR224326 BB_0682
BBAC360095 BARBAKC583_0578
BAFZ390236 BAPKO_0726
AYEL322098 AYWB_597
AURANTIMONAS
APHA212042 APH_1166
AMAR234826 AM1131
ALAI441768 ACL_0559
AFUL224325 AF_0647
ACAU438753 AZC_1594
AAUR290340 AAUR_1174


Organism features enriched in list (features available for 154 out of the 165 orgs in the list)
Feature    Pvalue       Num occurrences in list  Total num occurrences  
Arrangment:Pairs 0.000016713112
Disease:Pharyngitis 0.000020788
Disease:bronchitis_and_pneumonitis 0.000020788
Endospores:No 3.160e-986211
GC_Content_Range4:0-40 2.208e-680213
GC_Content_Range4:40-60 0.000990544224
GC_Content_Range7:0-30 1.975e-62747
GC_Content_Range7:50-60 0.000146314107
Genome_Size_Range5:0-2 1.171e-33100155
Genome_Size_Range5:2-4 0.000434536197
Genome_Size_Range5:4-6 7.501e-1513184
Genome_Size_Range5:6-10 0.0039638547
Genome_Size_Range9:0-1 1.239e-92227
Genome_Size_Range9:1-2 1.387e-2178128
Genome_Size_Range9:3-4 0.00319951177
Genome_Size_Range9:4-5 7.442e-9596
Genome_Size_Range9:5-6 0.0000108888
Genome_Size_Range9:6-8 0.0091474438
Gram_Stain:Gram_Pos 0.000101023150
Habitat:Host-associated 0.000225472206
Habitat:Multiple 4.727e-626178
Habitat:Terrestrial 0.0037789231
Motility:Yes 0.007082359267
Optimal_temp.:37 0.009237737106
Oxygen_Req:Anaerobic 0.002698538102
Oxygen_Req:Facultative 0.000441437201
Oxygen_Req:Microaerophilic 0.00563521018
Shape:Irregular_coccus 0.00012271217
Shape:Pleomorphic 0.004886268
Shape:Rod 0.000140773347
Shape:Sphere 1.293e-71619
Shape:Spiral 0.00410941634
Temp._range:Hyperthermophilic 0.00032291423



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ORGANISMS ENRICHED FOR GROUP:




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ORGANISMS DEPLETED FOR GROUP:




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PHYLOGENETIC PROFILE SIMILARITY WITH KNOWN PATHWAYS:

Pathways or complexes with absolute value of Pearson coefficient with respect to candidate larger than 0.4 are listed below
The candidate is assumed to exist in orgs listed in section List of organisms containing most genes from the group


Pathway or complex  # Orgs containing it  # of those orgs also containing candidate  Pearson Coeff  
AST-PWY (arginine degradation II (AST pathway))120850.6388
COBALSYN-PWY (adenosylcobalamin salvage from cobinamide I)1951070.6095
PWY0-1241 (ADP-L-glycero-β-D-manno-heptose biosynthesis)2181080.5633
PWY-5755 (4-hydroxybenzoate biosynthesis II (bacteria and fungi))81610.5494
GLYCOCAT-PWY (glycogen degradation I)2461130.5464
PWY0-981 (taurine degradation IV)106700.5371
PWY0-1182 (trehalose degradation II (trehalase))70550.5351
PWY-5148 (acyl-CoA hydrolysis)2271040.5098
LIPA-CORESYN-PWY (Lipid A-core biosynthesis)176890.4981
KDO-LIPASYN-PWY (KDO2-lipid A biosynthesis I)2251020.4971
PWY-4041 (γ-glutamyl cycle)2791140.4932
GALACTITOLCAT-PWY (galactitol degradation)73530.4928
PWY0-1329 (succinate to cytochrome bo oxidase electron transfer)96620.4905
PWY-5918 (heme biosynthesis I)2721120.4892
GLUCONSUPER-PWY (D-gluconate degradation)2291020.4887
PWY-5111 (CMP-KDO biosynthesis II (from D-arabinose 5-phosphate))3001170.4824
ENTNER-DOUDOROFF-PWY (Entner-Doudoroff pathway I)2491060.4823
GLYCOLYSIS-E-D (superpathway of glycolysis and Entner-Doudoroff)2491060.4823
GLUCARDEG-PWY (D-glucarate degradation I)152790.4712
HEME-BIOSYNTHESIS-II (heme biosynthesis from uroporphyrinogen-III I)2861120.4649
PWY4FS-7 (phosphatidylglycerol biosynthesis I (plastidic))2911130.4646
3-HYDROXYPHENYLACETATE-DEGRADATION-PWY (4-hydroxyphenylacetate degradation)149770.4609
PHOSLIPSYN-PWY (phospholipid biosynthesis I)2901120.4581
PWY-5386 (methylglyoxal degradation I)3051150.4580
PWY0-1319 (CDP-diacylglycerol biosynthesis II)2961130.4563
PWY-1269 (CMP-KDO biosynthesis I)3251170.4433
ECASYN-PWY (enterobacterial common antigen biosynthesis)191870.4432
LIPASYN-PWY (phospholipases)212920.4395
PWY0-1335 (NADH to cytochrome bo oxidase electron transfer)112630.4391
PWY0-541 (cyclopropane fatty acid (CFA) biosynthesis)3001110.4335
GLUTATHIONESYN-PWY (glutathione biosynthesis)3391180.4307
PWY0-901 (selenocysteine biosynthesis I (bacteria))230940.4192
BETSYN-PWY (glycine betaine biosynthesis I (Gram-negative bacteria))138690.4158
CHOLINE-BETAINE-ANA-PWY (choline degradation I)135680.4149
GLUCARGALACTSUPER-PWY (superpathway of D-glucarate and D-galactarate degradation)135680.4149
PWY-5861 (superpathway of demethylmenaquinone-8 biosynthesis)50370.4100
NAGLIPASYN-PWY (lipid IVA biosynthesis)3481170.4096
TYRFUMCAT-PWY (tyrosine degradation I)184810.4065
PWY0-1353 (succinate to cytochrome bd oxidase electron transfer)178790.4029
THREONINE-DEG2-PWY (threonine degradation II)214880.4010



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PAIRWISE GENOME CONTEXT SCORE MATRIX:

  G6580   G6463   EG11345   EG11344   EG11111   EG10489   
G65810.9990270.9987170.9991960.9991380.998660.998943
G65800.9988180.9994720.9996640.99860.998839
G64630.9991230.9990620.9997020.998727
EG113450.9996960.9988240.998806
EG113440.9987480.998742
EG111110.99861
EG10489



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PAIRWISE BLAST SCORES:

  G6581   G6580   G6463   EG11345   EG11344   EG11111   EG10489   
G65810.0f0------
G6580-0.0f0-----
G6463--0.0f0----
EG11345---0.0f0---
EG11344----0.0f0--
EG11111-----0.0f0-
EG10489------0.0f0



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PATHWAYS OR PROTEIN COMPLEX MATCHES IN TARGET ORG:

For each case, all genes involved in the pathway or complex are listed. For each gene we list: a tag indicating whether the gene is part of the candidate list or not, the average and the minimum scores of the gene to the candidate list, the gene name, and its product names.



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GENOME CONTEXT INFORMATION:

Each row corresponds to a replicon in an organism, each column to a gene in the candidate. The second column indicates whether the organims was included in the list used to compute the genome context scores or not. Some organisms are not included because they are phylogenetically too similar to others already in the list.
The number in the matrix indicate the position of the homolog of the gene in the replicon. All numbers are relative to the smaller one, which is assigned a position of zero. Two columns with the same number indicate that the two genes matched the same gene in that organism.

Genome browser links for gene clusters

The links below opens a genome browser BioCyc page for each cluster of genes in the target genome. These pages shows the central gene of the cluster in the target genome and its best homolog in the reference genomes, for the genomes that contain homologs for at least 75% of the genes in the group. Only one genome per phylogenetic cluster of organisms is shown, to keep the list smaller.

EG10489 EG11344 EG11345 G6580 G6581 (centered at G6580)
EG11111 G6463 (centered at G6463)


ORG:REPLICON:CIRC?\GENE  IN REF LIST  G6581   G6580   G6463   EG11345   EG11344   EG11111   EG10489   
336/623233/623279/623124/623387/623216/623369/623
AAEO224324:0:Tyes9220----959
AAUR290340:2:Tyes-----0-
AAVE397945:0:Tyes02392936-2391-279
ABAC204669:0:Tyes2800---2857603
ABAU360910:0:Tyes--0-591620
ABOR393595:0:Tyes62100198
ABUT367737:0:Tyes--1432-0--
ACAU438753:0:Tyes--0----
ACEL351607:0:Tyes525-980---0
ACRY349163:8:Tyes--518---0
ADEH290397:0:Tyes-9980--199847
AEHR187272:0:Tyes8241182118011841183-0
AFER243159:0:Tyes-015741187141915081667
AFUL224325:0:Tyes------0
AHYD196024:0:Tyes324340143322
ALAI441768:0:Tyes----0--
AMAR234826:0:Tyes------0
AMAR329726:9:Tyes0---197-387
AMET293826:0:Tyes1292---22882830
ANAE240017:0:Tyes-1744----0
AORE350688:0:Tyes687---01140-
APER272557:0:Tyes-1453----0
APHA212042:0:Tyes------0
APLE416269:0:Tyes0242-73970--
APLE434271:0:Tno0248-71169--
ASAL382245:5:Tyes3210190110201484
ASP1667:3:Tyes-346---0-
ASP232721:2:Tyes64621980-2192-446
ASP62928:0:Tyes0169832-16963346
ASP62977:0:Tyes0321693031-1
ASP76114:2:Tyes01692215-167221773
AVAR240292:3:Tyes0---3722-4491
AYEL322098:4:Tyes----0--
BABO262698:1:Tno-0464----
BAFZ390236:2:Fyes----0--
BAMB339670:3:Tno22291962223-19502228
BAMB398577:3:Tno185511848-018491854
BAMY326423:0:Tyes0---331-487
BANT260799:0:Tno0---2888-3086
BANT261594:2:Tno----0-197
BANT568206:2:Tyes0---1494-1697
BANT592021:2:Tno0---3052-3253
BAPH198804:0:Tyes----0216-
BAPH372461:0:Tyes----0139-
BBAC264462:0:Tyes187290224---0
BBAC360095:0:Tyes--0----
BBRO257310:0:Tyes--70-0691986
BBUR224326:21:Fno----0--
BCAN483179:1:Tno-0492----
BCEN331271:2:Tno172511719-017201724
BCEN331272:3:Tyes182411818-018191823
BCER226900:1:Tyes02149--2854-3052
BCER288681:0:Tno----0-197
BCER315749:1:Tyes02222--1814-1978
BCER405917:1:Tyes----0-234
BCER572264:1:Tno0---2943-3135
BCIC186490:0:Tyes----1520-
BCLA66692:0:Tyes250---0-1146
BFRA272559:1:Tyes----0-2180
BFRA295405:0:Tno----0-2378
BGAR290434:2:Fyes----0--
BHAL272558:0:Tyes319---0-1916
BHEN283166:0:Tyes--0----
BJAP224911:0:Fyes--0----
BLIC279010:0:Tyes18363647--223602420
BLON206672:0:Tyes------0
BMAL243160:1:Tno016591575-165820471
BMAL320388:1:Tno4041294-0293403
BMAL320389:1:Tyes123571975-235629840
BMEL224914:1:Tno--0----
BMEL359391:1:Tno-0448----
BOVI236:1:Tyes-0422----
BPAR257311:0:Tno--70-069911
BPER257313:0:Tyes--246-3662470
BPET94624:0:Tyes--1099-116811000
BPSE272560:1:Tyes020094-201022001
BPSE320372:1:Tno023795-238025991
BPSE320373:1:Tno023054-23062543-
BPUM315750:0:Tyes0---339-498
BQUI283165:0:Tyes--0----
BSP107806:2:Tyes---10225-
BSP36773:2:Tyes211412108-021092113
BSP376:0:Tyes--0----
BSUB:0:Tyes0---444-616
BSUI204722:1:Tyes-0489----
BSUI470137:1:Tno-0504----
BTHA271848:1:Tno04924-49121311
BTHE226186:0:Tyes----0-1955
BTHU281309:1:Tno0---2757-2948
BTHU412694:1:Tno0---2527-2714
BTRI382640:1:Tyes--0----
BVIE269482:7:Tyes192311917-019181922
BWEI315730:4:Tyes0---276121272943
BXEN266265:0:Tyes------0
BXEN266265:1:Tyes-----0-
CABO218497:0:Tyes----0--
CACE272562:1:Tyes--1011-14130169
CAULO:0:Tyes0362272----
CBEI290402:0:Tyes--2983-0--
CBLO203907:0:Tyes----0--
CBLO291272:0:Tno----057-
CBOT36826:1:Tno1361---2462-0
CBOT441770:0:Tyes1276---2374-0
CBOT441771:0:Tno1257---2279-0
CBOT441772:1:Tno1282---2404-0
CBOT498213:1:Tno1289---2471-0
CBOT508765:1:Tyes501---0--
CBOT515621:2:Tyes1480---2631-0
CBOT536232:0:Tno14172614--2713-0
CBUR227377:1:Tyes----0-50
CBUR360115:1:Tno----0-43
CBUR434922:2:Tno----0-39
CCAV227941:1:Tyes----0--
CCHL340177:0:Tyes----0--
CDES477974:0:Tyes161-----0
CDIF272563:1:Tyes0---906982441
CDIP257309:0:Tyes-----0-
CEFF196164:0:Fyes------0
CFEL264202:1:Tyes----0--
CFET360106:0:Tyes--0----
CGLU196627:0:Tyes0------
CHOM360107:1:Tyes--0----
CHYD246194:0:Tyes806---1059-0
CJAP155077:0:Tyes870847685-
CJEI306537:0:Tyes-----0-
CJEJ192222:0:Tyes--0----
CJEJ195099:0:Tno--0----
CJEJ354242:2:Tyes--0----
CJEJ360109:0:Tyes--0----
CJEJ407148:0:Tno--0----
CKLU431943:1:Tyes474-1241-0--
CKOR374847:0:Tyes-148----0
CMAQ397948:0:Tyes------0
CMIC31964:2:Tyes-----0-
CMIC443906:2:Tyes-----0-
CMUR243161:1:Tyes----0--
CNOV386415:0:Tyes0---189-483
CPER195102:1:Tyes0---704--
CPER195103:0:Tno0---687--
CPER289380:3:Tyes0---598--
CPHY357809:0:Tyes----232702516
CPNE115711:1:Tyes----0--
CPNE115713:0:Tno----0--
CPNE138677:0:Tno----0--
CPNE182082:0:Tno----0--
CPRO264201:0:Fyes-0--1340-1323
CPSY167879:0:Tyes4507612
CRUT413404:0:Tyes--458301300-0
CSAL290398:0:Tyes102910301028103210312410
CSP501479:6:Fyes0------
CSP501479:8:Fyes--0----
CSP78:2:Tyes--0----
CTET212717:0:Tyes0---132--
CTRA471472:0:Tyes----0--
CTRA471473:0:Tno----0--
CVES412965:0:Tyes---290289-0
CVIO243365:0:Tyes2750280-1279-
DARO159087:0:Tyes1612021-200026
DDES207559:0:Tyes0-144---1542
DETH243164:0:Tyes327-----0
DGEO319795:1:Tyes-1236675-0-369
DHAF138119:0:Tyes18840-----
DNOD246195:0:Tyes4350506478477--
DOLE96561:0:Tyes--584---0
DPSY177439:2:Tyes--0--74-
DRAD243230:3:Tyes345036-1190-977
DRED349161:0:Tyes372---0--
DSHI398580:5:Tyes0------
DSP216389:0:Tyes297-----0
DSP255470:0:Tno317-----0
DVUL882:1:Tyes118617561119---0
ECAN269484:0:Tyes------0
ECAR218491:0:Tyes12218432200
ECHA205920:0:Tyes------0
ECOL199310:0:Tno47747614744750480
ECOL316407:0:Tno25525412522530256
ECOL331111:6:Tno33133013283290332
ECOL362663:0:Tno23423312312320235
ECOL364106:1:Tno37937823763770381
ECOL405955:2:Tyes2632620260261-264
ECOL409438:6:Tyes26626512632640267
ECOL413997:0:Tno25024912472480251
ECOL439855:4:Tno12286432870
ECOL469008:0:Tno12252432530
ECOL481805:0:Tno12248432490
ECOL585034:0:Tno25325212502510254
ECOL585035:0:Tno23923812362370240
ECOL585055:0:Tno32532413223230326
ECOL585056:2:Tno30530413023030306
ECOL585057:0:Tno67275982770
ECOL585397:0:Tno43643514334340437
ECOL83334:0:Tno65165016486490652
ECOLI:0:Tno25625512532540257
ECOO157:0:Tno70870717057060709
EFAE226185:3:Tyes734787--12140-
EFER585054:1:Tyes75875917617600757
ELIT314225:0:Tyes0-520----
ERUM254945:0:Tyes------0
ERUM302409:0:Tno------0
ESP42895:1:Tyes25325212502510254
FALN326424:0:Tyes15931798858--0-
FJOH376686:0:Tyes0-3464-2347--
FMAG334413:1:Tyes----0--
FNOD381764:0:Tyes-----0-
FNUC190304:0:Tyes0---9--
FPHI484022:1:Tyes-0--367--
FRANT:0:Tno-0--1196--
FSP106370:0:Tyes12072978612--0-
FSP1855:0:Tyes02246598--1513-
FSUC59374:0:Tyes0---491--
FTUL351581:0:Tno-346--0--
FTUL393011:0:Tno-317--0--
FTUL393115:0:Tyes-0--1176--
FTUL401614:0:Tyes-371--0--
FTUL418136:0:Tno-0--205--
FTUL458234:0:Tno-343--0--
GBET391165:0:Tyes0-1190---1591
GFOR411154:0:Tyes0---268--
GKAU235909:1:Tyes0686--280-452
GMET269799:1:Tyes10100--6701059-
GOXY290633:5:Tyes--0---722
GSUL243231:0:Tyes12400--2403423-
GTHE420246:1:Tyes0688--281-444
GURA351605:0:Tyes110---02505-
GVIO251221:0:Tyes838-198-0-2568
HACI382638:1:Tyes--4---0
HARS204773:0:Tyes199811996-019972787
HAUR316274:2:Tyes07222432-56-674
HBUT415426:0:Tyes-0-----
HCHE349521:0:Tyes3260154
HDUC233412:0:Tyes0--114045--
HHAL349124:0:Tyes0-829833832-1727
HHEP235279:0:Tyes--0----
HINF281310:0:Tyes512--45401293-
HINF374930:0:Tyes686--753-0-
HINF71421:0:Tno509--45301233-
HMAR272569:8:Tyes------0
HMOD498761:0:Tyes424---393-0
HMUK485914:1:Tyes------0
HNEP81032:0:Tyes345-0----
HPY:0:Tno--5---0
HPYL357544:1:Tyes--5---0
HPYL85963:0:Tno--5---0
HSAL478009:4:Tyes------0
HSOM205914:1:Tyes779778-7338220-
HSOM228400:0:Tno14011400-01434926-
HSP64091:2:Tno------0
HWAL362976:1:Tyes------0
IHOS453591:0:Tyes-0----151
ILOI283942:0:Tyes657-06596581187
JSP290400:1:Tyes0-2233----
JSP375286:0:Tyes217912177-021783169
KPNE272620:2:Tyes3251920151914
KRAD266940:2:Fyes527----01153
LACI272621:0:Tyes132---0--
LBIF355278:2:Tyes--508-0--
LBIF456481:2:Tno-1236518-0--
LBOR355276:1:Tyes--1005---0
LBOR355277:1:Tno--0---799
LBRE387344:2:Tyes040--619--
LCAS321967:1:Tyes10610--986--
LCHO395495:0:Tyes-01240-312392369
LDEL321956:0:Tyes----0--
LDEL390333:0:Tyes-0--224--
LGAS324831:0:Tyes-0--376--
LHEL405566:0:Tyes4340--306--
LINN272626:1:Tno542---0-54
LINT189518:1:Tyes--0---2086
LINT267671:1:Tno--0---1485
LINT363253:3:Tyes251-0----
LJOH257314:0:Tyes----0--
LLAC272622:5:Tyes12281461--6780495
LLAC272623:0:Tyes1184---6690504
LMES203120:1:Tyes0----1423-
LMON169963:0:Tno464---0-54
LMON265669:0:Tyes443---0-57
LPLA220668:0:Tyes0---245--
LPNE272624:0:Tno387-390-9610389
LPNE297245:1:Fno379-382-8680381
LPNE297246:1:Fyes381-384-8500383
LPNE400673:0:Tno1642-1639-020681640
LREU557436:0:Tyes1501045--0--
LSAK314315:0:Tyes254---250-
LSPH444177:1:Tyes11430--3183-3413
LWEL386043:0:Tyes450---0-54
LXYL281090:0:Tyes0------
MABS561007:1:Tyes-----02827
MACE188937:0:Tyes-3680----0
MAEO419665:0:Tyes------0
MAER449447:0:Tyes0---3117-4548
MAQU351348:2:Tyes230541-
MART243272:0:Tyes----0--
MAVI243243:0:Tyes-----02957
MBAR269797:1:Tyes-74----0
MBOV233413:0:Tno-----6550
MBOV410289:0:Tno-----6890
MBUR259564:0:Tyes------0
MCAP243233:0:Tyes3301489149101488-2724
MCAP340047:0:Tyes----0--
MEXT419610:0:Tyes--0----
MFLA265072:0:Tyes162616020-160316281627
MFLO265311:0:Tyes----0--
MGEN243273:0:Tyes----0--
MGIL350054:3:Tyes-----0-
MHUN323259:0:Tyes------0
MHYO262719:0:Tyes----0--
MHYO262722:0:Tno----0--
MHYO295358:0:Tno----0--
MJAN243232:2:Tyes------0
MKAN190192:0:Tyes------0
MLAB410358:0:Tyes------0
MLEP272631:0:Tyes-----0-
MLOT266835:2:Tyes1171-0----
MMAG342108:0:Tyes13503070----
MMAR267377:0:Tyes------0
MMAR368407:0:Tyes------0
MMAR394221:0:Tyes--0----
MMAR402880:1:Tyes------0
MMAR426368:0:Tyes------0
MMAR444158:0:Tyes------0
MMAZ192952:0:Tyes-0----582
MMOB267748:0:Tyes----0--
MMYC272632:0:Tyes----0--
MPEN272633:0:Tyes----0--
MPET420662:1:Tyes-11040-110316
MPUL272635:0:Tyes----0--
MSED399549:0:Tyes------0
MSME246196:0:Tyes-----0-
MSP164756:1:Tno-----3890
MSP164757:0:Tno-----4470
MSP189918:2:Tyes-----3900
MSP266779:3:Tyes--0----
MSP400668:0:Tyes-20431-
MSP409:2:Tyes--1395---0
MSTA339860:0:Tyes------0
MSUC221988:0:Tyes21142113-038322142
MSYN262723:0:Tyes----0--
MTBCDC:0:Tno-----7120
MTBRV:0:Tno-----6550
MTHE187420:0:Tyes-1151----0
MTHE264732:0:Tyes357---644-0
MTHE349307:0:Tyes------0
MTUB336982:0:Tno-----6650
MTUB419947:0:Tyes-----6700
MVAN350058:0:Tyes-----0-
MXAN246197:0:Tyes887-5174--02762
NARO279238:0:Tyes2659-0----
NEUR228410:0:Tyes-01570-79315691568
NEUT335283:2:Tyes191501759-204717581757
NFAR247156:2:Tyes-----01544
NGON242231:0:Tyes--0-7211249
NHAM323097:2:Tyes71215030----
NMEN122586:0:Tno626-0-6851-
NMEN122587:0:Tyes--0-6541-
NMEN272831:0:Tno--0-5891347
NMEN374833:0:Tno--0-6561-
NMUL323848:3:Tyes-14-032
NOCE323261:1:Tyes--1031640639-0
NPHA348780:2:Tyes------0
NSEN222891:0:Tyes------0
NSP103690:6:Tyes02431--817-1286
NSP35761:1:Tyes0----1773873
NSP387092:0:Tyes--0----
NWIN323098:0:Tyes864-0----
OANT439375:5:Tyes-6050----
OCAR504832:0:Tyes-11600----
OIHE221109:0:Tyes----0-155
OTSU357244:0:Fyes------0
PACN267747:0:Tyes0------
PAER178306:0:Tyes-193----0
PAER208963:0:Tyes0143714411435143614401439
PAER208964:0:Tno1365406512
PARC259536:0:Tyes0-1215-9581570-
PARS340102:0:Tyes-280----0
PAST100379:0:Tyes----0--
PATL342610:0:Tyes3-0541843
PCAR338963:0:Tyes261-1234-831-0
PCRY335284:1:Tyes0-1358-83218131
PDIS435591:0:Tyes----2692-0
PENT384676:0:Tyes2446260154
PFLU205922:0:Tyes1378406512
PFLU216595:1:Tyes1533406512
PFLU220664:0:Tyes1499406512
PFUR186497:0:Tyes------0
PHAL326442:1:Tyes386-4223893884230
PING357804:0:Tyes232-0213214--
PISL384616:0:Tyes-94----0
PLUM243265:0:Fyes1221122211224122301220
PLUT319225:0:Tyes----0--
PMAR146891:0:Tyes------0
PMAR167539:0:Tyes0-----652
PMAR167540:0:Tyes------0
PMAR167542:0:Tyes------0
PMAR167546:0:Tyes------0
PMAR167555:0:Tyes------0
PMAR59920:0:Tno------0
PMAR74546:0:Tyes------0
PMAR74547:0:Tyes831---0-1618
PMAR93060:0:Tyes------0
PMEN399739:0:Tyes1362406512
PMOB403833:0:Tyes0-----1343
PMUL272843:1:Tyes11241123-136985501125
PNAP365044:8:Tyes02485605-2499-602
PPEN278197:0:Tyes6600--747--
PPRO298386:2:Tyes2-50143
PPUT160488:0:Tno764406512
PPUT351746:0:Tyes2850260154
PPUT76869:0:Tno1232406512
PRUM264731:0:Tyes--0-34--
PSP117:0:Tyes--3051-0--
PSP296591:2:Tyes-15950-1604-1
PSP312153:0:Tyes--1184-12310-
PSP56811:2:Tyes1499-989-3510-
PSTU379731:0:Tyes1418406512
PSYR205918:0:Tyes116550761-
PSYR223283:2:Tyes15661481451501491460
PTHE370438:0:Tyes584---0-1471
PTOR263820:0:Tyes------0
RAKA293614:0:Fyes------0
RALB246199:0:Tyes-0--2942--
RBEL336407:0:Tyes32-----0
RBEL391896:0:Fno0-----32
RCAN293613:0:Fyes----496-0
RCAS383372:0:Tyes034873838-1543-1046
RCON272944:0:Tno----57-0
RDEN375451:4:Tyes1378-0----
RETL347834:5:Tyes-6280----
REUT264198:1:Tyes-----0-
REUT264198:3:Tyes4690-68-3
REUT381666:1:Tyes-----0-
REUT381666:2:Tyes4740-73-3
RFEL315456:2:Tyes----0-535
RFER338969:1:Tyes-9950-996-1
RLEG216596:6:Tyes-0690----
RMAS416276:1:Tyes------0
RMET266264:1:Tyes-----0-
RMET266264:2:Tyes3660-65-2
RPAL258594:0:Tyes-02081----
RPAL316055:0:Tyes--0----
RPAL316056:0:Tyes--0----
RPAL316057:0:Tyes--0----
RPAL316058:0:Tyes--0----
RPOM246200:1:Tyes179503296----
RPRO272947:0:Tyes------0
RRIC392021:0:Fno------0
RRIC452659:0:Tyes------0
RRUB269796:1:Tyes0-171----
RSAL288705:0:Tyes--987--0578
RSOL267608:1:Tyes-2590-258125
RSP101510:3:Fyes-----33570
RSP357808:0:Tyes376924141445-1337-0
RSPH272943:4:Tyes017181464----
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