CANDIDATE ID: 316

CANDIDATE ID: 316

NUMBER OF GENES: 7
AVERAGE SCORE:    9.9958148e-1 (range=[0.0,1.0])
AVERAGE MINIMUM BLAST P-VAL:    1.0000000e+0

Gene List
List of organisms containing most genes from the group
    Phylogenetic tree highlighting these organisms (opens new page)
List of organisms containing very few or no genes from the group
List of organisms enriched for group
List of organisms depleted for group
Phylogenetic profile similarity with known pathways
Pairwise genome context scores
Pairwise Blast scores
Pathway or protein complex matches in target organism
Genome context matrix
    Genes and their orthologs in genome browser BioCyc pages



GENE LIST:

- EG11404 (ychF) (b1203)
   Products of gene:
     - EG11404-MONOMER (putative GTP-binding protein)

- EG11294 (ispE) (b1208)
   Products of gene:
     - EG11294-MONOMER (IspE)
     - CPLX0-3841 (4-diphosphocytidyl-2-C-methylerythritol kinase)
       Reactions:
        4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol + ATP  ->  2-phospho-4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol + ADP + 2 H+
         In pathways
         PWY-5121 (PWY-5121)
         PWY-6270 (PWY-6270)
         NONMEVIPP-PWY (methylerythritol phosphate pathway)

- EG11293 (lolB) (b1209)
   Products of gene:
     - EG11293-MONOMER (outer membrane lipoprotein, localization of lipoproteins in the outer membrane)

- EG10885 (rplY) (b2185)
   Products of gene:
     - EG10885-MONOMER (50S ribosomal subunit protein L25)
     - CPLX0-3962 (50S ribosomal subunit)
     - CPLX0-3964 (ribosome)

- EG10785 (pth) (b1204)
   Products of gene:
     - EG10785-MONOMER (peptidyl-tRNA hydrolase)
       Reactions:
        N-substituted aminoacyl-tRNA + H2O  =  a tRNA + an N-substituted amino acid

- EG10774 (prs) (b1207)
   Products of gene:
     - PRPPSYN-MONOMER (ribose-phosphate diphosphokinase)
       Reactions:
        ATP + D-ribose-5-phosphate  =  5-phospho-alpha-D-ribose 1-diphosphate + AMP + 2 H+
         In pathways
         PRPP-PWY (superpathway of histidine, purine, and pyrimidine biosynthesis)
         PWY0-662 (PRPP biosynthesis I)

- EG10427 (hemA) (b1210)
   Products of gene:
     - GLUTRNAREDUCT-MONOMER (HemA)
     - CPLX0-3741 (glutamyl-tRNA reductase)
       Reactions:
        glutamate-1-semialdehyde + NADP+ + tRNAGlu  =  L-glutamyl-tRNAGlu + NADPH
         In pathways
         PWY-5918 (PWY-5918)
         PWY-5188 (tetrapyrrole biosynthesis I)



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ORGANISMS CONTAINING AT LEAST 6 GENES FROM THE GROUP:

Total number of orgs: 193
Effective number of orgs (counting one per cluster within 468 clusters): 123

Organism list
Homologs in each organism in the list
Features enriched in organism list


Follow (ncbi) link, when present, to find the set of organism features for each organism
Org ID  Org Name  # genes in group found in org  
YPSE349747 ncbi Yersinia pseudotuberculosis IP 317587
YPSE273123 ncbi Yersinia pseudotuberculosis IP 329537
YPES386656 ncbi Yersinia pestis Pestoides F7
YPES377628 ncbi Yersinia pestis Nepal5167
YPES360102 ncbi Yersinia pestis Antiqua7
YPES349746 ncbi Yersinia pestis Angola7
YPES214092 ncbi Yersinia pestis CO927
YPES187410 ncbi Yersinia pestis KIM 107
YENT393305 ncbi Yersinia enterocolitica enterocolitica 80817
XORY360094 ncbi Xanthomonas oryzae pv. oryzae PXO99A7
XORY342109 ncbi Xanthomonas oryzae pv. oryzae MAFF 3110187
XORY291331 ncbi Xanthomonas oryzae pv. oryzae KACC103317
XFAS405440 ncbi Xylella fastidiosa M127
XFAS183190 ncbi Xylella fastidiosa Temecula17
XFAS160492 ncbi Xylella fastidiosa 9a5c7
XCAM487884 Xanthomonas campestris pv. paulliniae7
XCAM316273 ncbi Xanthomonas campestris pv. vesicatoria str. 85-107
XCAM314565 ncbi Xanthomonas campestris pv. campestris str. 80047
XCAM190485 ncbi Xanthomonas campestris pv. campestris str. ATCC 339137
XAXO190486 ncbi Xanthomonas axonopodis pv. citri str. 3067
VVUL216895 ncbi Vibrio vulnificus CMCP67
VVUL196600 ncbi Vibrio vulnificus YJ0167
VPAR223926 ncbi Vibrio parahaemolyticus RIMD 22106337
VFIS312309 ncbi Vibrio fischeri ES1146
VEIS391735 ncbi Verminephrobacter eiseniae EF01-26
VCHO345073 ncbi Vibrio cholerae O3957
VCHO ncbi Vibrio cholerae O1 biovar El Tor str. N169617
TTUR377629 ncbi Teredinibacter turnerae T79016
TSP1755 Thermoanaerobacter sp.6
TDEN292415 ncbi Thiobacillus denitrificans ATCC 252596
STYP99287 ncbi Salmonella enterica enterica serovar Typhimurium str. LT27
SSP94122 ncbi Shewanella sp. ANA-37
SSON300269 ncbi Shigella sonnei Ss0467
SSED425104 ncbi Shewanella sediminis HAW-EB37
SPRO399741 ncbi Serratia proteamaculans 5687
SPEA398579 ncbi Shewanella pealeana ATCC 7003457
SONE211586 ncbi Shewanella oneidensis MR-17
SLOI323850 ncbi Shewanella loihica PV-47
SHIGELLA ncbi Shigella flexneri 2a str. 2457T7
SHAL458817 ncbi Shewanella halifaxensis HAW-EB47
SGLO343509 ncbi Sodalis glossinidius morsitans7
SFLE373384 ncbi Shigella flexneri 5 str. 84017
SFLE198214 ncbi Shigella flexneri 2a str. 3017
SENT454169 ncbi Salmonella enterica enterica serovar Heidelberg str. SL4767
SENT321314 ncbi Salmonella enterica enterica serovar Choleraesuis str. SC-B677
SENT295319 ncbi Salmonella enterica enterica serovar Paratyphi A str. ATCC 91507
SENT220341 ncbi Salmonella enterica enterica serovar Typhi str. CT187
SENT209261 ncbi Salmonella enterica enterica serovar Typhi str. Ty27
SDYS300267 ncbi Shigella dysenteriae Sd1977
SDEN318161 ncbi Shewanella denitrificans OS2177
SDEG203122 ncbi Saccharophagus degradans 2-407
SBOY300268 ncbi Shigella boydii Sb2277
SBAL402882 ncbi Shewanella baltica OS1857
SBAL399599 ncbi Shewanella baltica OS1957
RSOL267608 ncbi Ralstonia solanacearum GMI10007
RRUB269796 ncbi Rhodospirillum rubrum ATCC 111706
RMET266264 ncbi Ralstonia metallidurans CH346
RFER338969 ncbi Rhodoferax ferrireducens T1186
REUT381666 ncbi Ralstonia eutropha H167
REUT264198 ncbi Ralstonia eutropha JMP1347
PSYR223283 ncbi Pseudomonas syringae pv. tomato str. DC30007
PSYR205918 ncbi Pseudomonas syringae pv. syringae B728a7
PSTU379731 ncbi Pseudomonas stutzeri A15017
PSP56811 Psychrobacter sp.7
PSP312153 ncbi Polynucleobacter necessarius asymbioticus QLW-P1DMWA-16
PSP296591 ncbi Polaromonas sp. JS6666
PPUT76869 ncbi Pseudomonas putida GB-17
PPUT351746 ncbi Pseudomonas putida F17
PPUT160488 ncbi Pseudomonas putida KT24407
PPRO298386 ncbi Photobacterium profundum SS97
PNAP365044 ncbi Polaromonas naphthalenivorans CJ26
PMUL272843 ncbi Pasteurella multocida multocida Pm707
PMEN399739 ncbi Pseudomonas mendocina ymp7
PLUM243265 ncbi Photorhabdus luminescens laumondii TTO17
PING357804 ncbi Psychromonas ingrahamii 377
PHAL326442 ncbi Pseudoalteromonas haloplanktis TAC1257
PFLU220664 ncbi Pseudomonas fluorescens Pf-57
PFLU216595 ncbi Pseudomonas fluorescens SBW257
PFLU205922 ncbi Pseudomonas fluorescens Pf0-17
PENT384676 ncbi Pseudomonas entomophila L487
PCRY335284 ncbi Psychrobacter cryohalolentis K56
PATL342610 ncbi Pseudoalteromonas atlantica T6c7
PARC259536 ncbi Psychrobacter arcticus 273-47
PAER208964 ncbi Pseudomonas aeruginosa PAO17
PAER208963 ncbi Pseudomonas aeruginosa UCBPP-PA147
OIHE221109 ncbi Oceanobacillus iheyensis HTE8316
NOCE323261 ncbi Nitrosococcus oceani ATCC 197077
NMUL323848 ncbi Nitrosospira multiformis ATCC 251967
NMEN374833 ncbi Neisseria meningitidis 0534426
NMEN272831 ncbi Neisseria meningitidis FAM186
NMEN122587 ncbi Neisseria meningitidis Z24917
NMEN122586 ncbi Neisseria meningitidis MC586
NGON242231 ncbi Neisseria gonorrhoeae FA 10906
NEUT335283 ncbi Nitrosomonas eutropha C917
NEUR228410 ncbi Nitrosomonas europaea ATCC 197187
MSUC221988 ncbi Mannheimia succiniciproducens MBEL55E7
MSP400668 ncbi Marinomonas sp. MWYL17
MPET420662 ncbi Methylibium petroleiphilum PM16
MFLA265072 ncbi Methylobacillus flagellatus KT7
MCAP243233 ncbi Methylococcus capsulatus Bath7
MAQU351348 ncbi Marinobacter aquaeolei VT87
LPNE400673 ncbi Legionella pneumophila Corby6
LPNE297246 ncbi Legionella pneumophila Paris6
LPNE297245 ncbi Legionella pneumophila Lens6
LPNE272624 ncbi Legionella pneumophila pneumophila Philadelphia 16
LCHO395495 ncbi Leptothrix cholodnii SP-66
KPNE272620 ncbi Klebsiella pneumoniae pneumoniae MGH 785787
JSP375286 ncbi Janthinobacterium sp. Marseille7
ILOI283942 ncbi Idiomarina loihiensis L2TR7
HSOM228400 ncbi Haemophilus somnus 23367
HSOM205914 ncbi Haemophilus somnus 129PT7
HINF71421 ncbi Haemophilus influenzae Rd KW206
HINF374930 ncbi Haemophilus influenzae PittEE6
HINF281310 ncbi Haemophilus influenzae 86-028NP6
HHAL349124 ncbi Halorhodospira halophila SL17
HDUC233412 ncbi Haemophilus ducreyi 35000HP6
HCHE349521 ncbi Hahella chejuensis KCTC 23967
HARS204773 ncbi Herminiimonas arsenicoxydans7
GTHE420246 ncbi Geobacillus thermodenitrificans NG80-26
FTUL458234 ncbi Francisella tularensis holarctica FTNF002-007
FTUL418136 ncbi Francisella tularensis tularensis WY96-34187
FTUL401614 ncbi Francisella novicida U1127
FTUL393115 ncbi Francisella tularensis tularensis FSC1987
FTUL393011 ncbi Francisella tularensis holarctica OSU187
FTUL351581 Francisella tularensis holarctica FSC2007
FRANT ncbi Francisella tularensis tularensis SCHU S47
FPHI484022 ncbi Francisella philomiragia philomiragia ATCC 250177
ESP42895 Enterobacter sp.7
EFER585054 ncbi Escherichia fergusonii ATCC 354697
ECOO157 ncbi Escherichia coli O157:H7 EDL9337
ECOL83334 Escherichia coli O157:H77
ECOL585397 ncbi Escherichia coli ED1a7
ECOL585057 ncbi Escherichia coli IAI397
ECOL585056 ncbi Escherichia coli UMN0267
ECOL585055 ncbi Escherichia coli 559897
ECOL585035 ncbi Escherichia coli S887
ECOL585034 ncbi Escherichia coli IAI17
ECOL481805 ncbi Escherichia coli ATCC 87397
ECOL469008 ncbi Escherichia coli BL21(DE3)7
ECOL439855 ncbi Escherichia coli SMS-3-57
ECOL413997 ncbi Escherichia coli B str. REL6067
ECOL409438 ncbi Escherichia coli SE117
ECOL405955 ncbi Escherichia coli APEC O16
ECOL364106 ncbi Escherichia coli UTI897
ECOL362663 ncbi Escherichia coli 5367
ECOL331111 ncbi Escherichia coli E24377A7
ECOL316407 ncbi Escherichia coli K-12 substr. W31107
ECOL199310 ncbi Escherichia coli CFT0737
ECAR218491 ncbi Pectobacterium atrosepticum SCRI10437
DARO159087 ncbi Dechloromonas aromatica RCB7
CVIO243365 ncbi Chromobacterium violaceum ATCC 124727
CVES412965 ncbi Candidatus Vesicomyosocius okutanii HA6
CSAL290398 ncbi Chromohalobacter salexigens DSM 30437
CRUT413404 ncbi Candidatus Ruthia magnifica Cm (Calyptogena magnifica)6
CPSY167879 ncbi Colwellia psychrerythraea 34H7
CJAP155077 Cellvibrio japonicus7
CBUR434922 ncbi Coxiella burnetii Dugway 5J108-1116
CBUR360115 ncbi Coxiella burnetii RSA 3316
CBUR227377 ncbi Coxiella burnetii RSA 4936
BVIE269482 ncbi Burkholderia vietnamiensis G46
BTHA271848 ncbi Burkholderia thailandensis E2647
BSUB ncbi Bacillus subtilis subtilis 1686
BSP36773 Burkholderia sp.7
BPSE320373 ncbi Burkholderia pseudomallei 6687
BPSE320372 ncbi Burkholderia pseudomallei 1710b7
BPSE272560 ncbi Burkholderia pseudomallei K962437
BPET94624 Bordetella petrii7
BPER257313 ncbi Bordetella pertussis Tohama I7
BPAR257311 ncbi Bordetella parapertussis 128227
BMAL320389 ncbi Burkholderia mallei NCTC 102477
BMAL320388 ncbi Burkholderia mallei SAVP17
BMAL243160 ncbi Burkholderia mallei ATCC 233447
BCIC186490 Candidatus Baumannia cicadellinicola6
BCEN331272 ncbi Burkholderia cenocepacia HI24247
BCEN331271 ncbi Burkholderia cenocepacia AU 10547
BBRO257310 ncbi Bordetella bronchiseptica RB507
BAMB398577 ncbi Burkholderia ambifaria MC40-67
BAMB339670 ncbi Burkholderia ambifaria AMMD7
ASP76114 ncbi Aromatoleum aromaticum EbN16
ASP62977 ncbi Acinetobacter sp. ADP17
ASP62928 ncbi Azoarcus sp. BH727
ASP232721 ncbi Acidovorax sp. JS426
ASAL382245 ncbi Aeromonas salmonicida salmonicida A4497
APLE434271 ncbi Actinobacillus pleuropneumoniae serovar 3 str. JL037
APLE416269 ncbi Actinobacillus pleuropneumoniae L207
AORE350688 ncbi Alkaliphilus oremlandii OhILAs6
AHYD196024 Aeromonas hydrophila dhakensis7
AFER243159 ncbi Acidithiobacillus ferrooxidans ATCC 232707
AEHR187272 ncbi Alkalilimnicola ehrlichii MLHE-17
ADEH290397 ncbi Anaeromyxobacter dehalogenans 2CP-C6
ABOR393595 ncbi Alcanivorax borkumensis SK27
ABAU360910 ncbi Bordetella avium 197N7
AAVE397945 ncbi Acidovorax citrulli AAC00-16


Names of the homologs of the genes in the group in each of these orgs
  EG11404   EG11294   EG11293   EG10885   EG10785   EG10774   EG10427   
YPSE349747 YPSIP31758_2075YPSIP31758_2069YPSIP31758_2068YPSIP31758_2720YPSIP31758_2074YPSIP31758_2070YPSIP31758_2067
YPSE273123 YPTB1998YPTB2002YPTB2003YPTB1299YPTB1999YPTB2001YPTB2004
YPES386656 YPDSF_1109YPDSF_1104YPDSF_1103YPDSF_2430YPDSF_1108YPDSF_1106YPDSF_1102
YPES377628 YPN_1491YPN_1496YPN_1497YPN_2712YPN_1492YPN_1494YPN_1498
YPES360102 YPA_1393YPA_1398YPA_1399YPA_0982YPA_1394YPA_1396YPA_1400
YPES349746 YPANGOLA_A2468YPANGOLA_A2463YPANGOLA_A2462YPANGOLA_A1488YPANGOLA_A2467YPANGOLA_A2464YPANGOLA_A2461
YPES214092 YPO2010YPO2014YPO2015YPO1264YPO2011YPO2013YPO2016
YPES187410 Y2298Y2293Y2292Y2920Y2297Y2295Y2291
YENT393305 YE2439YE2434YE2433YE1422YE2437YE2435YE2432
XORY360094 XOOORF_1261XOOORF_1255XOOORF_1254XOOORF_1259XOOORF_1260XOOORF_1258XOOORF_1252
XORY342109 XOO3402XOO3406XOO3407XOO3404XOO3403XOO3405XOO3409
XORY291331 XOO3600XOO3604XOO3605XOO3602XOO3601XOO3603XOO3607
XFAS405440 XFASM12_2204XFASM12_2208XFASM12_2209XFASM12_2206XFASM12_2205XFASM12_2207XFASM12_2211
XFAS183190 PD_2013PD_2018PD_2019PD_2015PD_2014PD_2016PD_2021
XFAS160492 XF2641XF2645XF2646XF2643XF2642XF2644XF2648
XCAM487884 XCC-B100_3474XCC-B100_3478XCC-B100_3479XCC-B100_3476XCC-B100_3475XCC-B100_3477XCC-B100_3481
XCAM316273 XCAORF_1067XCAORF_1062XCAORF_1061XCAORF_1065XCAORF_1066XCAORF_1064XCAORF_1058
XCAM314565 XC_3355XC_3359XC_3360XC_3357XC_3356XC_3358XC_3362
XCAM190485 XCC0876XCC0871XCC0870XCC0874XCC0875XCC0873XCC0868
XAXO190486 XAC0953XAC0948XAC0947XAC0951XAC0952XAC0950XAC0945
VVUL216895 VV1_0260VV1_0256VV1_0255VV1_2850VV1_0258VV1_0257VV1_0254
VVUL196600 VV0924VV0928VV0929VV1420VV0925VV0926VV0930
VPAR223926 VP0737VP0740VP0741VP1210VP0738VP0739VP0742
VFIS312309 VF0765VF0766VF0862VF0763VF0764VF0767
VEIS391735 VEIS_0466VEIS_0952VEIS_0950VEIS_0949VEIS_0951VEIS_1553
VCHO345073 VC0395_A1762VC0395_A1759VC0395_A1758VC0395_A1246VC0395_A1761VC0395_A1760VC0395_A1757
VCHO VC2185VC2182VC2181VC1640VC2184VC2183VC2180
TTUR377629 TERTU_3854TERTU_3848TERTU_3852TERTU_3853TERTU_3851TERTU_3845
TSP1755 TETH514_2022TETH514_0599TETH514_1041TETH514_0591TETH514_0587TETH514_0317
TDEN292415 TBD_0390TBD_0386TBD_0388TBD_0389TBD_0387TBD_2492
STYP99287 STM1784STM1779STM1778STM2224STM1783STM1780STM1777
SSP94122 SHEWANA3_1012SHEWANA3_0766SHEWANA3_0767SHEWANA3_1892SHEWANA3_1011SHEWANA3_0765SHEWANA3_0768
SSON300269 SSO_1975SSO_1970SSO_1969SSO_2241SSO_1974SSO_1971SSO_1968
SSED425104 SSED_3467SSED_3462SSED_3461SSED_2449SSED_3468SSED_3463SSED_3460
SPRO399741 SPRO_1982SPRO_1987SPRO_1988SPRO_3254SPRO_1984SPRO_1986SPRO_1989
SPEA398579 SPEA_3133SPEA_3129SPEA_3128SPEA_1959SPEA_3134SPEA_3130SPEA_3127
SONE211586 SO_1185SO_3836SO_3835SO_2112SO_1184SO_3837SO_3834
SLOI323850 SHEW_2919SHEW_2915SHEW_2914SHEW_1830SHEW_2920SHEW_2916SHEW_2913
SHIGELLA YCHFYCHBHEMMRPLYPTHPRSAHEMA
SHAL458817 SHAL_3218SHAL_3214SHAL_3213SHAL_2340SHAL_3219SHAL_3215SHAL_3212
SGLO343509 SG1882SG1879SG1878SG1572SG1881SG1880SG1877
SFLE373384 SFV_1217SFV_1222SFV_1223SFV_2263SFV_1218SFV_1221SFV_1224
SFLE198214 AAN42819.1AAN42824.1AAN42825.1AAN43791.1AAN42820.1AAN42823.1AAN42826.1
SENT454169 SEHA_C1981SEHA_C1975SEHA_C1974SEHA_C2461SEHA_C1980SEHA_C1977SEHA_C1972
SENT321314 SCH_1778SCH_1773SCH_1772SCH_2241SCH_1777SCH_1774SCH_1771
SENT295319 SPA1089SPA1094SPA1095SPA0626SPA1090SPA1093SPA1096
SENT220341 STY1910STY1905STY1904STY2461STY1909STY1906STY1902
SENT209261 T1092T1097T1098T0630T1093T1096T1099
SDYS300267 SDY_1252SDY_1257SDY_1258SDY_0894SDY_1253SDY_1256SDY_1259
SDEN318161 SDEN_0819SDEN_0917SDEN_0918SDEN_1503SDEN_0818SDEN_0916SDEN_0919
SDEG203122 SDE_3259SDE_3255SDE_3254SDE_3257SDE_3258SDE_3256SDE_3252
SBOY300268 SBO_1864SBO_1859SBO_1858SBO_2139SBO_1863SBO_1860SBO_1857
SBAL402882 SHEW185_3299SHEW185_3617SHEW185_3616SHEW185_1927SHEW185_3300SHEW185_3618SHEW185_3615
SBAL399599 SBAL195_3435SBAL195_3740SBAL195_3739SBAL195_1934SBAL195_3436SBAL195_3741SBAL195_3738
RSOL267608 RSC2898RSC0396RSC0397RSC0394RSC0393RSC0395RSC2900
RRUB269796 RRU_A3748RRU_A0263RRU_A3746RRU_A3747RRU_A0645RRU_A0749
RMET266264 RMET_3193RMET_0290RMET_0288RMET_0287RMET_0289RMET_3200
RFER338969 RFER_1578RFER_1659RFER_1661RFER_1662RFER_1660RFER_1281
REUT381666 H16_A3333H16_A0374H16_A0375H16_A0371H16_A0370H16_A0372H16_A3339
REUT264198 REUT_A3037REUT_A0343REUT_A0344REUT_A0341REUT_A0340REUT_A0342REUT_A3043
PSYR223283 PSPTO_1101PSPTO_1105PSPTO_1106PSPTO_1103PSPTO_1102PSPTO_1104PSPTO_1108
PSYR205918 PSYR_0941PSYR_0945PSYR_0946PSYR_0943PSYR_0942PSYR_0944PSYR_0948
PSTU379731 PST_3192PST_3186PST_3185PST_3190PST_3191PST_3189PST_3183
PSP56811 PSYCPRWF_1909PSYCPRWF_2104PSYCPRWF_2103PSYCPRWF_2106PSYCPRWF_2107PSYCPRWF_2105PSYCPRWF_0311
PSP312153 PNUC_0142PNUC_1919PNUC_1921PNUC_1922PNUC_1920PNUC_0137
PSP296591 BPRO_1127BPRO_1294BPRO_1292BPRO_1291BPRO_1293BPRO_0851
PPUT76869 PPUTGB1_0763PPUTGB1_0767PPUTGB1_0768PPUTGB1_0765PPUTGB1_0764PPUTGB1_0766PPUTGB1_0773
PPUT351746 PPUT_0753PPUT_0757PPUT_0758PPUT_0755PPUT_0754PPUT_0756PPUT_0760
PPUT160488 PP_0719PP_0723PP_0724PP_0721PP_0720PP_0722PP_0732
PPRO298386 PBPRA2851PBPRA2848PBPRA2847PBPRA1534PBPRA2850PBPRA2849PBPRA2846
PNAP365044 PNAP_3363PNAP_0900PNAP_0898PNAP_0897PNAP_0899PNAP_0776
PMUL272843 PM0163PM0245PM0246PM0639PM0164PM0244PM0684
PMEN399739 PMEN_1052PMEN_1056PMEN_1057PMEN_1054PMEN_1053PMEN_1055PMEN_1059
PLUM243265 PLU2054PLU2067PLU2068PLU2869PLU2055PLU2066PLU2069
PING357804 PING_0908PING_0912PING_0913PING_0910PING_0909PING_0911PING_1606
PHAL326442 PSHAA1051PSHAA1055PSHAA1056PSHAA1053PSHAA1052PSHAA1054PSHAA1057
PFLU220664 PFL_5168PFL_5163PFL_5162PFL_5166PFL_5167PFL_5165PFL_5160
PFLU216595 PFLU0729PFLU0733PFLU0734PFLU0731PFLU0730PFLU0732PFLU0737
PFLU205922 PFL_4756PFL_4752PFL_4751PFL_4754PFL_4755PFL_4753PFL_4749
PENT384676 PSEEN0854PSEEN0858PSEEN0859PSEEN0856PSEEN0855PSEEN0857PSEEN0875
PCRY335284 PCRYO_1524PCRYO_0186PCRYO_0184PCRYO_0183PCRYO_0185PCRYO_0189
PATL342610 PATL_2571PATL_2566PATL_2565PATL_2569PATL_2570PATL_2567PATL_2564
PARC259536 PSYC_0894PSYC_0173PSYC_0174PSYC_0171PSYC_0170PSYC_0172PSYC_0176
PAER208964 PA4673PA4669PA4668PA4671PA4672PA4670PA4666
PAER208963 PA14_61820PA14_61750PA14_61740PA14_61780PA14_61790PA14_61770PA14_61710
OIHE221109 OB3480OB0055OB0060OB0061OB0059OB2070
NOCE323261 NOC_0517NOC_0513NOC_0512NOC_0515NOC_0516NOC_0514NOC_0510
NMUL323848 NMUL_A0592NMUL_A0588NMUL_A0587NMUL_A0590NMUL_A0591NMUL_A0589NMUL_A2642
NMEN374833 NMCC_0384NMCC_0833NMCC_0838NMCC_0759NMCC_0837NMCC_0522
NMEN272831 NMC0379NMC0815NMC0817NMC0747NMC0816NMC0518
NMEN122587 NMA0618NMA1092NMA1091NMA1094NMA1004NMA1093NMA0760
NMEN122586 NMB_1838NMB_0874NMB_0876NMB_0795NMB_0875NMB_0576
NGON242231 NGO0063NGO0440NGO0442NGO0379NGO0441NGO1403
NEUT335283 NEUT_1143NEUT_1139NEUT_1138NEUT_1141NEUT_1142NEUT_1140NEUT_0826
NEUR228410 NE1823NE1827NE1828NE1825NE1824NE1826NE1914
MSUC221988 MS0555MS1535MS1534MS1116MS0556MS1536MS1324
MSP400668 MMWYL1_3607MMWYL1_3603MMWYL1_3602MMWYL1_3605MMWYL1_3606MMWYL1_3604MMWYL1_3600
MPET420662 MPE_A3166MPE_A3230MPE_A3228MPE_A3227MPE_A3229MPE_A0524
MFLA265072 MFLA_0675MFLA_0679MFLA_0680MFLA_0677MFLA_0676MFLA_0678MFLA_2473
MCAP243233 MCA_2032MCA_1055MCA_1054MCA_1057MCA_1058MCA_1056MCA_1052
MAQU351348 MAQU_2368MAQU_2364MAQU_2363MAQU_2366MAQU_2367MAQU_2365MAQU_2361
LPNE400673 LPC_0485LPC_2753LPC_0487LPC_0486LPC_2756LPC_1803
LPNE297246 LPP2707LPP0608LPP2705LPP2706LPP0607LPP2283
LPNE297245 LPL2579LPL0589LPL2577LPL2578LPL0588LPL2256
LPNE272624 LPG2654LPG0547LPG2652LPG2653LPG0543LPG2335
LCHO395495 LCHO_0271LCHO_3497LCHO_3499LCHO_3500LCHO_3498LCHO_0581
KPNE272620 GKPORF_B1386GKPORF_B1380GKPORF_B1379GKPORF_B1909GKPORF_B1385GKPORF_B1381GKPORF_B1378
JSP375286 MMA_3131MMA_3127MMA_3126MMA_3129MMA_3130MMA_3128MMA_0214
ILOI283942 IL0932IL0928IL0927IL0930IL0931IL0929IL0926
HSOM228400 HSM_1768HSM_1475HSM_1476HSM_1352HSM_1767HSM_1474HSM_1279
HSOM205914 HS_0503HS_0997HS_0998HS_0873HS_0504HS_0996HS_0810
HINF71421 HI_0393HI_1608HI_1607HI_1630HI_0394HI_1609
HINF374930 CGSHIEE_01030CGSHIEE_05690CGSHIEE_05685CGSHIEE_05815CGSHIEE_01025CGSHIEE_05695
HINF281310 NTHI0513NTHI1434NTHI1435NTHI1410NTHI0514NTHI1433
HHAL349124 HHAL_0986HHAL_0990HHAL_0991HHAL_0988HHAL_0987HHAL_0989HHAL_0993
HDUC233412 HD_0995HD_1628HD_1629HD_1249HD_0996HD_1627
HCHE349521 HCH_01722HCH_01727HCH_01728HCH_01725HCH_01723HCH_01726HCH_01731
HARS204773 HEAR2896HEAR2892HEAR2891HEAR2894HEAR2895HEAR2893HEAR0186
GTHE420246 GTNG_3428GTNG_0039GTNG_0045GTNG_0046GTNG_0044GTNG_2576
FTUL458234 FTA_1006FTA_0164FTA_0163FTA_1000FTA_1007FTA_0999FTA_1825
FTUL418136 FTW_1049FTW_1830FTW_1829FTW_1053FTW_1048FTW_1054FTW_0258
FTUL401614 FTN_1004FTN_0146FTN_0145FTN_1007FTN_1003FTN_1008FTN_1546
FTUL393115 FTF0679CFTF0271FTF0270FTF0675FTF0680CFTF0674FTF0167
FTUL393011 FTH_0933FTH_0144FTH_0143FTH_0928FTH_0934FTH_0927FTH_1661
FTUL351581 FTL_0955FTL_0151FTL_0150FTL_0950FTL_0956FTL_0949FTL_1722
FRANT FT.0680CISPELOLBRPLYPTHPRSAHEMA
FPHI484022 FPHI_1583FPHI_0678FPHI_0679FPHI_1580FPHI_1584FPHI_1579FPHI_1071
ESP42895 ENT638_2345ENT638_2340ENT638_2339ENT638_2781ENT638_2344ENT638_2341ENT638_2338
EFER585054 EFER_1758EFER_1753EFER_1752EFER_2275EFER_1757EFER_1754EFER_1751
ECOO157 YCHFYCHBHEMMRPLYPTHPRSAHEMA
ECOL83334 ECS1708ECS1713ECS1714ECS3077ECS1709ECS1712ECS1715
ECOL585397 ECED1_1351ECED1_1356ECED1_1357ECED1_2636ECED1_1352ECED1_1355ECED1_1358
ECOL585057 ECIAI39_1539ECIAI39_1544ECIAI39_1545ECIAI39_2326ECIAI39_1540ECIAI39_1543ECIAI39_1546
ECOL585056 ECUMN_1500ECUMN_1505ECUMN_1506ECUMN_2522ECUMN_1501ECUMN_1504ECUMN_1507
ECOL585055 EC55989_1299EC55989_1304EC55989_1305EC55989_2439EC55989_1300EC55989_1303EC55989_1306
ECOL585035 ECS88_1271ECS88_1276ECS88_1277ECS88_2334ECS88_1272ECS88_1275ECS88_1278
ECOL585034 ECIAI1_1224ECIAI1_1229ECIAI1_1230ECIAI1_2267ECIAI1_1225ECIAI1_1228ECIAI1_1231
ECOL481805 ECOLC_2423ECOLC_2418ECOLC_2417ECOLC_1462ECOLC_2422ECOLC_2419ECOLC_2416
ECOL469008 ECBD_2418ECBD_2413ECBD_2412ECBD_1472ECBD_2417ECBD_2414ECBD_2411
ECOL439855 ECSMS35_1939ECSMS35_1934ECSMS35_1933ECSMS35_2334ECSMS35_1938ECSMS35_1935ECSMS35_1932
ECOL413997 ECB_01178ECB_01183ECB_01184ECB_02115ECB_01179ECB_01182ECB_01185
ECOL409438 ECSE_1253ECSE_1258ECSE_1259ECSE_2454ECSE_1254ECSE_1257ECSE_1260
ECOL405955 APECO1_319APECO1_324APECO1_325APECO1_320APECO1_323APECO1_327
ECOL364106 UTI89_C1397UTI89_C1402UTI89_C1403UTI89_C2462UTI89_C1398UTI89_C1401UTI89_C1404
ECOL362663 ECP_1251ECP_1256ECP_1257ECP_2226ECP_1252ECP_1255ECP_1258
ECOL331111 ECE24377A_1350ECE24377A_1356ECE24377A_1357ECE24377A_2483ECE24377A_1351ECE24377A_1355ECE24377A_1358
ECOL316407 ECK1191:JW1194:B1203ECK1196:JW1199:B1208ECK1197:JW1200:B1209ECK2179:JW2173:B2185ECK1192:JW1195:B1204ECK1195:JW1198:B1207ECK1198:JW1201:B1210
ECOL199310 C1661C1666C1667C2722C1662C1665C1668
ECAR218491 ECA2183ECA2187ECA2188ECA2745ECA2184ECA2186ECA2189
DARO159087 DARO_3733DARO_3729DARO_3728DARO_3731DARO_3732DARO_3730DARO_3689
CVIO243365 CV_4055CV_4059CV_4060CV_4057CV_4056CV_4058CV_0079
CVES412965 COSY_0968COSY_0115COSY_0966COSY_0967COSY_0113COSY_0675
CSAL290398 CSAL_1521CSAL_1525CSAL_1526CSAL_1523CSAL_1522CSAL_1524CSAL_1528
CRUT413404 RMAG_1069RMAG_0110RMAG_1067RMAG_1068RMAG_0109RMAG_0730
CPSY167879 CPS_3560CPS_3556CPS_3555CPS_3558CPS_3559CPS_3557CPS_3554
CJAP155077 CJA_0641CJA_0646CJA_0647CJA_0643CJA_0642CJA_0644CJA_0651
CBUR434922 COXBU7E912_0072COXBU7E912_0058COXBU7E912_0070COXBU7E912_0071COXBU7E912_0060COXBU7E912_2065
CBUR360115 COXBURSA331_A2043COXBURSA331_A2028COXBURSA331_A2041COXBURSA331_A2042COXBURSA331_A2030COXBURSA331_A0118
CBUR227377 CBU_1842CBU_1829CBU_1840CBU_1841CBU_1830CBU_1966
BVIE269482 BCEP1808_0501BCEP1808_2906BCEP1808_2908BCEP1808_2909BCEP1808_2907BCEP1808_0492
BTHA271848 BTH_I2920BTH_I0476BTH_I0477BTH_I0473BTH_I0472BTH_I0474BTH_I2929
BSUB BSU40920BSU00460BSU00520BSU00530BSU00510BSU28170
BSP36773 BCEP18194_A3611BCEP18194_A6131BCEP18194_A6130BCEP18194_A6133BCEP18194_A6134BCEP18194_A6132BCEP18194_A3598
BPSE320373 BURPS668_3569BURPS668_0571BURPS668_0572BURPS668_0568BURPS668_0567BURPS668_0569BURPS668_3589
BPSE320372 BURPS1710B_A3870BURPS1710B_A0797BURPS1710B_A0798BURPS1710B_A0794BURPS1710B_A0793BURPS1710B_A0795BURPS1710B_A3888
BPSE272560 BPSL3062BPSL0523BPSL0524BPSL0520BPSL0519BPSL0521BPSL3072
BPET94624 BPET3996BPET4003BPET4004BPET4001BPET4000BPET4002BPET4543
BPER257313 BP3121BP3126BP3127BP3124BP3123BP3125BP0677
BPAR257311 BPP0821BPP0816BPP0815BPP0818BPP0819BPP0817BPP0381
BMAL320389 BMA10247_A1923BMA10247_2932BMA10247_2933BMA10247_2929BMA10247_2928BMA10247_2930BMA10247_A1942
BMAL320388 BMASAVP1_0657BMASAVP1_A0086BMASAVP1_A0085BMASAVP1_A0089BMASAVP1_A0090BMASAVP1_A0088BMASAVP1_0675
BMAL243160 BMA_A0519BMA_3118BMA_3117BMA_3121BMA_3122BMA_3120BMA_A0505
BCIC186490 BCI_0295BCI_0292BCI_0291BCI_0390BCI_0294BCI_0293
BCEN331272 BCEN2424_0524BCEN2424_2801BCEN2424_2800BCEN2424_2803BCEN2424_2804BCEN2424_2802BCEN2424_0511
BCEN331271 BCEN_2581BCEN_2187BCEN_2186BCEN_2189BCEN_2190BCEN_2188BCEN_2593
BBRO257310 BB0905BB0900BB0899BB0902BB0903BB0901BB0383
BAMB398577 BAMMC406_0453BAMMC406_2719BAMMC406_2718BAMMC406_2721BAMMC406_2722BAMMC406_2720BAMMC406_0441
BAMB339670 BAMB_0429BAMB_2861BAMB_2860BAMB_2863BAMB_2864BAMB_2862BAMB_0415
ASP76114 EBA4139EBA1405EBA1409EBA1411EBA1406EBA1179
ASP62977 ACIAD2071ACIAD2903ACIAD2902ACIAD2908ACIAD2909ACIAD2907ACIAD2900
ASP62928 AZO0752AZO0756AZO0757AZO0754AZO0753AZO0755AZO0980
ASP232721 AJS_3618AJS_0896AJS_0894AJS_0893AJS_0895AJS_0852
ASAL382245 ASA_1167ASA_1172ASA_1173ASA_2080ASA_1168ASA_1170ASA_1174
APLE434271 APJL_0035APJL_0779APJL_0780APJL_0517APJL_0034APJL_0778APJL_0425
APLE416269 APL_0034APL_0776APL_0777APL_0487APL_0033APL_0775APL_0404
AORE350688 CLOS_1364CLOS_0285CLOS_0045CLOS_2644CLOS_2645CLOS_1324
AHYD196024 AHA_3157AHA_3152AHA_3151AHA_2219AHA_3156AHA_3154AHA_3150
AFER243159 AFE_0950AFE_0342AFE_0343AFE_0952AFE_0951AFE_0341AFE_0345
AEHR187272 MLG_0286MLG_0282MLG_0281MLG_0284MLG_0285MLG_0283MLG_0279
ADEH290397 ADEH_4337ADEH_0123ADEH_0120ADEH_0119ADEH_0121ADEH_2493
ABOR393595 ABO_0515ABO_0519ABO_0520ABO_0517ABO_0516ABO_0518ABO_0522
ABAU360910 BAV0541BAV0536BAV0535BAV0538BAV0539BAV0537BAV0296
AAVE397945 AAVE_0887AAVE_3609AAVE_3611AAVE_3612AAVE_3610AAVE_3663


Organism features enriched in list (features available for 182 out of the 193 orgs in the list)
Feature    Pvalue       Num occurrences in list  Total num occurrences  
Arrangment:Chains 0.00002901392
Disease:Bubonic_plague 0.000873966
Disease:Dysentery 0.000873966
Disease:Gastroenteritis 0.00072241013
Disease:Legionnaire's_disease 0.009282844
Disease:Meningitis_and_septicemia 0.009282844
Disease:Tularemia 0.002853855
Endospores:No 1.312e-1131211
Endospores:Yes 0.0000777553
GC_Content_Range4:0-40 1.876e-1723213
GC_Content_Range4:40-60 3.045e-10104224
GC_Content_Range7:30-40 1.563e-923166
GC_Content_Range7:50-60 7.057e-959107
GC_Content_Range7:60-70 0.003207354134
Genome_Size_Range5:0-2 1.020e-1413155
Genome_Size_Range5:2-4 0.000283644197
Genome_Size_Range5:4-6 2.982e-17102184
Genome_Size_Range5:6-10 0.00372002347
Genome_Size_Range9:0-1 0.0004036127
Genome_Size_Range9:1-2 6.420e-1112128
Genome_Size_Range9:2-3 0.003303626120
Genome_Size_Range9:4-5 5.533e-75196
Genome_Size_Range9:5-6 1.074e-85188
Genome_Size_Range9:6-8 0.00028372238
Gram_Stain:Gram_Neg 1.905e-29163333
Gram_Stain:Gram_Pos 3.244e-234150
Habitat:Specialized 0.0029245853
Motility:No 5.148e-822151
Motility:Yes 7.034e-9115267
Optimal_temp.:- 0.003371894257
Optimal_temp.:35-37 1.973e-71313
Optimal_temp.:37 0.009809924106
Oxygen_Req:Anaerobic 1.424e-116102
Oxygen_Req:Facultative 2.879e-892201
Pathogenic_in:Animal 0.00184083166
Pathogenic_in:No 5.091e-647226
Pathogenic_in:Plant 0.00072771115
Shape:Coccobacillus 0.0045222811
Shape:Coccus 3.372e-6982
Shape:Rod 6.935e-14148347
Shape:Spiral 0.0002564234
Temp._range:Mesophilic 0.0014861160473
Temp._range:Psychrophilic 0.000508389
Temp._range:Thermophilic 0.0001828235



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ORGANISMS CONTAINING AT MOST 1 GENES FROM THE GROUP:

Total number of orgs: 97
Effective number of orgs (counting one per cluster within 468 clusters): 86

Organism list
Homologs in each organism in the list
Features enriched in organism list


Follow (ncbi) link, when present, to find the set of organism features for each organism
Org ID  Org Name  # genes in group found in org  
WPIP955 Wolbachia pipientis1
UURE95667 Ureaplasma urealyticum serovar 130
UURE95664 Ureaplasma urealyticum serovar 100
UPAR505682 ncbi Ureaplasma parvum serovar 3 str. ATCC 278150
UMET351160 ncbi uncultured methanogenic archaeon RC-I1
TVOL273116 ncbi Thermoplasma volcanium GSS10
TPEN368408 ncbi Thermofilum pendens Hrk 50
TPAL243276 ncbi Treponema pallidum pallidum Nichols0
TKOD69014 ncbi Thermococcus kodakarensis KOD10
TACI273075 ncbi Thermoplasma acidophilum DSM 17280
STOK273063 ncbi Sulfolobus tokodaii 71
SSUI391296 ncbi Streptococcus suis 98HAH331
SSUI391295 ncbi Streptococcus suis 05ZYH331
SSOL273057 ncbi Sulfolobus solfataricus P20
SMAR399550 ncbi Staphylothermus marinus F10
SACI330779 ncbi Sulfolobus acidocaldarius DSM 6391
PTOR263820 ncbi Picrophilus torridus DSM 97901
PMOB403833 ncbi Petrotoga mobilis SJ951
PISL384616 ncbi Pyrobaculum islandicum DSM 41841
PHOR70601 ncbi Pyrococcus horikoshii OT30
PFUR186497 ncbi Pyrococcus furiosus DSM 36380
PAST100379 Onion yellows phytoplasma0
PARS340102 ncbi Pyrobaculum arsenaticum DSM 135141
PAER178306 ncbi Pyrobaculum aerophilum IM21
PABY272844 ncbi Pyrococcus abyssi GE50
OTSU357244 ncbi Orientia tsutsugamushi Boryong1
NSEN222891 ncbi Neorickettsia sennetsu Miyayama0
NPHA348780 ncbi Natronomonas pharaonis DSM 21601
MTHE349307 ncbi Methanosaeta thermophila PT1
MTHE187420 ncbi Methanothermobacter thermautotrophicus Delta H1
MSYN262723 ncbi Mycoplasma synoviae 531
MSTA339860 ncbi Methanosphaera stadtmanae DSM 30911
MSED399549 ncbi Metallosphaera sedula DSM 53480
MPUL272635 ncbi Mycoplasma pulmonis UAB CTIP0
MPNE272634 ncbi Mycoplasma pneumoniae M1290
MPEN272633 ncbi Mycoplasma penetrans HF-20
MMYC272632 ncbi Mycoplasma mycoides mycoides SC str. PG10
MMOB267748 ncbi Mycoplasma mobile 163K0
MMAZ192952 ncbi Methanosarcina mazei Go11
MMAR444158 ncbi Methanococcus maripaludis C61
MMAR426368 ncbi Methanococcus maripaludis C71
MMAR402880 ncbi Methanococcus maripaludis C51
MMAR368407 ncbi Methanoculleus marisnigri JR11
MMAR267377 ncbi Methanococcus maripaludis S21
MLAB410358 ncbi Methanocorpusculum labreanum Z1
MKAN190192 ncbi Methanopyrus kandleri AV191
MJAN243232 ncbi Methanocaldococcus jannaschii DSM 26611
MHYO295358 ncbi Mycoplasma hyopneumoniae 2320
MHYO262722 ncbi Mycoplasma hyopneumoniae 74480
MHYO262719 ncbi Mycoplasma hyopneumoniae J0
MHUN323259 ncbi Methanospirillum hungatei JF-11
MGEN243273 ncbi Mycoplasma genitalium G370
MFLO265311 ncbi Mesoplasma florum L10
MCAP340047 ncbi Mycoplasma capricolum capricolum ATCC 273430
MBUR259564 ncbi Methanococcoides burtonii DSM 62421
MBAR269797 ncbi Methanosarcina barkeri Fusaro1
MART243272 ncbi Mycoplasma arthritidis 158L3-10
MAEO419665 ncbi Methanococcus aeolicus Nankai-31
MACE188937 ncbi Methanosarcina acetivorans C2A1
LLAC272622 ncbi Lactococcus lactis cremoris SK111
LINT189518 ncbi Leptospira interrogans serovar Lai str. 566011
LBOR355277 ncbi Leptospira borgpetersenii serovar Hardjo-bovis JB1971
LBOR355276 ncbi Leptospira borgpetersenii serovar Hardjo-bovis L5501
IHOS453591 ncbi Ignicoccus hospitalis KIN4/I1
HWAL362976 ncbi Haloquadratum walsbyi DSM 167901
HSP64091 ncbi Halobacterium sp. NRC-11
HSAL478009 ncbi Halobacterium salinarum R11
HMUK485914 ncbi Halomicrobium mukohataei DSM 122861
HMAR272569 ncbi Haloarcula marismortui ATCC 430491
HBUT415426 ncbi Hyperthermus butylicus DSM 54561
FNOD381764 ncbi Fervidobacterium nodosum Rt17-B11
FMAG334413 ncbi Finegoldia magna ATCC 293281
ERUM302409 ncbi Ehrlichia ruminantium Gardel1
ERUM254945 ncbi Ehrlichia ruminantium Welgevonden1
CTRA471473 ncbi Chlamydia trachomatis L2b/UCH-1/proctitis1
CTRA471472 ncbi Chlamydia trachomatis 434/Bu1
CSUL444179 ncbi Candidatus Sulcia muelleri GWSS0
CPNE182082 ncbi Chlamydophila pneumoniae TW-1830
CPNE138677 ncbi Chlamydophila pneumoniae J1380
CPNE115713 ncbi Chlamydophila pneumoniae CWL0290
CPNE115711 ncbi Chlamydophila pneumoniae AR390
CMET456442 ncbi Candidatus Methanoregula boonei 6A81
CMAQ397948 ncbi Caldivirga maquilingensis IC-1671
CKOR374847 ncbi Candidatus Korarchaeum cryptofilum OPF80
CFEL264202 ncbi Chlamydophila felis Fe/C-561
CDIP257309 ncbi Corynebacterium diphtheriae NCTC 131291
BXEN266265 ncbi Burkholderia xenovorans LB4000
BTUR314724 ncbi Borrelia turicatae 91E1350
BLON206672 ncbi Bifidobacterium longum NCC27051
BHER314723 ncbi Borrelia hermsii DAH0
BGAR290434 ncbi Borrelia garinii PBi0
BBUR224326 ncbi Borrelia burgdorferi B310
BAFZ390236 ncbi Borrelia afzelii PKo0
AYEL322098 ncbi Aster yellows witches-broom phytoplasma AYWB0
AURANTIMONAS Aurantimonas manganoxydans SI85-9A10
APER272557 ncbi Aeropyrum pernix K11
AFUL224325 ncbi Archaeoglobus fulgidus DSM 43041


Names of the homologs of the genes in the group in each of these orgs
  EG11404   EG11294   EG11293   EG10885   EG10785   EG10774   EG10427   
WPIP955 WD_0360
UURE95667
UURE95664
UPAR505682
UMET351160 RCIX911
TVOL273116
TPEN368408
TPAL243276
TKOD69014
TACI273075
STOK273063 ST0212
SSUI391296 SSU98_0009
SSUI391295 SSU05_0007
SSOL273057
SMAR399550
SACI330779 SACI_0777
PTOR263820 PTO0918
PMOB403833 PMOB_1453
PISL384616 PISL_0096
PHOR70601
PFUR186497
PAST100379
PARS340102 PARS_2261
PAER178306 PAE0601
PABY272844
OTSU357244 OTBS_1802
NSEN222891
NPHA348780 NP4502A
MTHE349307 MTHE_0049
MTHE187420 MTH1012
MSYN262723 MS53_0616
MSTA339860 MSP_1408
MSED399549
MPUL272635
MPNE272634
MPEN272633
MMYC272632
MMOB267748
MMAZ192952 MM1741
MMAR444158 MMARC6_0859
MMAR426368 MMARC7_1087
MMAR402880 MMARC5_1588
MMAR368407 MEMAR_0980
MMAR267377 MMP0088
MLAB410358 MLAB_0523
MKAN190192 MK0200
MJAN243232 MJ_0143
MHYO295358
MHYO262722
MHYO262719
MHUN323259 MHUN_2562
MGEN243273
MFLO265311
MCAP340047
MBUR259564 MBUR_1229
MBAR269797 MBAR_A1462
MART243272
MAEO419665 MAEO_0052
MACE188937 MA0577
LLAC272622 LACR_0007
LINT189518 LA3821
LBOR355277 LBJ_2587
LBOR355276 LBL_0525
IHOS453591 IGNI_0512
HWAL362976 HQ3336A
HSP64091 VNG1774G
HSAL478009 OE3496R
HMUK485914 HMUK_1612
HMAR272569 RRNAC1708
HBUT415426 HBUT_0206
FNOD381764 FNOD_0604
FMAG334413 FMG_1130
ERUM302409 ERGA_CDS_00850
ERUM254945 ERWE_CDS_00890
CTRA471473 CTLON_0343
CTRA471472 CTL0347
CSUL444179
CPNE182082
CPNE138677
CPNE115713
CPNE115711
CMET456442 MBOO_1238
CMAQ397948 CMAQ_1730
CKOR374847
CFEL264202 CF0546
CDIP257309 DIP0400
BXEN266265
BTUR314724
BLON206672 BL0853
BHER314723
BGAR290434
BBUR224326
BAFZ390236
AYEL322098
AURANTIMONAS
APER272557 APE2296
AFUL224325 AF_1975


Organism features enriched in list (features available for 92 out of the 97 orgs in the list)
Feature    Pvalue       Num occurrences in list  Total num occurrences  
Arrangment:Aggregates 0.005837959
Arrangment:Singles 0.004319556286
Disease:Pharyngitis 0.003057258
Disease:bronchitis_and_pneumonitis 0.003057258
Endospores:No 3.135e-1466211
GC_Content_Range4:0-40 0.004927544213
GC_Content_Range4:60-100 0.00005889145
GC_Content_Range7:0-30 1.086e-72247
GC_Content_Range7:40-50 0.006804027117
GC_Content_Range7:60-70 0.00027559134
Genome_Size_Range5:0-2 4.886e-1658155
Genome_Size_Range5:4-6 5.343e-115184
Genome_Size_Range5:6-10 0.0020973147
Genome_Size_Range9:0-1 7.710e-111927
Genome_Size_Range9:1-2 7.627e-739128
Genome_Size_Range9:4-5 0.0001163496
Genome_Size_Range9:5-6 1.371e-6188
Gram_Stain:Gram_Neg 4.358e-633333
Gram_Stain:Gram_Pos 3.338e-76150
Habitat:Multiple 2.822e-79178
Habitat:Specialized 1.456e-62253
Optimal_temp.:- 0.002671729257
Optimal_temp.:100 0.003822133
Optimal_temp.:35-40 0.003822133
Optimal_temp.:85 0.000586544
Oxygen_Req:Aerobic 0.000933517185
Oxygen_Req:Anaerobic 3.360e-836102
Oxygen_Req:Facultative 0.006128122201
Pathogenic_in:Animal 0.0081527466
Pathogenic_in:Ruminant 0.003822133
Pathogenic_in:Swine 0.000089155
Salinity:Extreme_halophilic 0.001350457
Shape:Irregular_coccus 3.416e-111517
Shape:Rod 2.134e-1323347
Shape:Sphere 2.866e-111619
Temp._range:Hyperthermophilic 2.618e-101723
Temp._range:Mesophilic 3.905e-658473
Temp._range:Thermophilic 0.00304001235



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ORGANISMS ENRICHED FOR GROUP:

Total number of orgs: 6
Effective number of orgs (counting one per cluster within 468 clusters): 1

Organism list
Homologs in each organism in the list
Features enriched in organism list


Follow (ncbi) link, when present, to find the set of organism features for each organism
Org ID  Org Name    Pvalue       # genes in tgt genome found in org  # genes in group found in org  
FTUL458234 ncbi Francisella tularensis holarctica FTNF002-00 0.00489949277
FTUL393011 ncbi Francisella tularensis holarctica OSU18 0.00493669287
FRANT ncbi Francisella tularensis tularensis SCHU S4 0.00599389547
FTUL393115 ncbi Francisella tularensis tularensis FSC198 0.00617259587
FTUL351581 Francisella tularensis holarctica FSC200 0.00617259587
FTUL418136 ncbi Francisella tularensis tularensis WY96-3418 0.00698399757


Names of the homologs of the genes in the group in each of these orgs
  EG11404   EG11294   EG11293   EG10885   EG10785   EG10774   EG10427   
FTUL458234 FTA_1006FTA_0164FTA_0163FTA_1000FTA_1007FTA_0999FTA_1825
FTUL393011 FTH_0933FTH_0144FTH_0143FTH_0928FTH_0934FTH_0927FTH_1661
FRANT FT.0680CISPELOLBRPLYPTHPRSAHEMA
FTUL393115 FTF0679CFTF0271FTF0270FTF0675FTF0680CFTF0674FTF0167
FTUL351581 FTL_0955FTL_0151FTL_0150FTL_0950FTL_0956FTL_0949FTL_1722
FTUL418136 FTW_1049FTW_1830FTW_1829FTW_1053FTW_1048FTW_1054FTW_0258


Organism features enriched in list (features available for 5 out of the 6 orgs in the list)
Feature    Pvalue       Num occurrences in list  Total num occurrences  
Disease:Tularemia 1.813e-1255
GC_Content_Range4:0-40 0.00631675213
GC_Content_Range7:30-40 0.00179175166
Genome_Size_Range5:0-2 0.00126625155
Genome_Size_Range9:1-2 0.00047965128
Motility:No 0.00110915151
Oxygen_Req:Aerobic 0.00309975185
Pathogenic_in:Animal 0.0006754466



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ORGANISMS DEPLETED FOR GROUP:




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PHYLOGENETIC PROFILE SIMILARITY WITH KNOWN PATHWAYS:

Pathways or complexes with absolute value of Pearson coefficient with respect to candidate larger than 0.4 are listed below
The candidate is assumed to exist in orgs listed in section List of organisms containing most genes from the group


Pathway or complex  # Orgs containing it  # of those orgs also containing candidate  Pearson Coeff  
PWY0-1241 (ADP-L-glycero-β-D-manno-heptose biosynthesis)2181610.6803
GLYCOCAT-PWY (glycogen degradation I)2461650.6305
PWY-5111 (CMP-KDO biosynthesis II (from D-arabinose 5-phosphate))3001820.6187
AST-PWY (arginine degradation II (AST pathway))1201060.6058
PWY-5918 (heme biosynthesis I)2721670.5791
PWY-1269 (CMP-KDO biosynthesis I)3251840.5790
PWY4FS-7 (phosphatidylglycerol biosynthesis I (plastidic))2911720.5695
PWY0-1319 (CDP-diacylglycerol biosynthesis II)2961730.5651
PHOSLIPSYN-PWY (phospholipid biosynthesis I)2901710.5648
ECASYN-PWY (enterobacterial common antigen biosynthesis)1911340.5634
HEME-BIOSYNTHESIS-II (heme biosynthesis from uroporphyrinogen-III I)2861690.5601
PWY-4041 (γ-glutamyl cycle)2791660.5554
PWY-5386 (methylglyoxal degradation I)3051740.5521
GLUTATHIONESYN-PWY (glutathione biosynthesis)3391830.5435
COBALSYN-PWY (adenosylcobalamin salvage from cobinamide I)1951320.5359
PWY-5913 (TCA cycle variation IV)3011700.5332
NAGLIPASYN-PWY (lipid IVA biosynthesis)3481840.5326
KDO-LIPASYN-PWY (KDO2-lipid A biosynthesis I)2251430.5297
PWY-5755 (4-hydroxybenzoate biosynthesis II (bacteria and fungi))81760.5254
LIPA-CORESYN-PWY (Lipid A-core biosynthesis)1761220.5203
PWY-5857 (ubiquinone-10 biosynthesis (prokaryotic))1831240.5130
GLUCONSUPER-PWY (D-gluconate degradation)2291390.4900
PWY-5855 (ubiquinone-7 biosynthesis (prokaryotic))1911240.4881
TYRFUMCAT-PWY (tyrosine degradation I)1841210.4870
3-HYDROXYPHENYLACETATE-DEGRADATION-PWY (4-hydroxyphenylacetate degradation)1491050.4788
PWY0-845 (superpathway of pyridoxal 5'-phosphate biosynthesis and salvage)3291700.4734
ENTNER-DOUDOROFF-PWY (Entner-Doudoroff pathway I)2491430.4667
GLYCOLYSIS-E-D (superpathway of glycolysis and Entner-Doudoroff)2491430.4667
LIPASYN-PWY (phospholipases)2121290.4639
KDOSYN-PWY (KDO transfer to lipid IVA I)1801140.4460
UBISYN-PWY (ubiquinol-8 biosynthesis (prokaryotic))3981850.4459
PWY-5856 (ubiquinone-9 biosynthesis (prokaryotic))2551420.4448
PWY0-1182 (trehalose degradation II (trehalase))70620.4431
KDO-NAGLIPASYN-PWY (superpathway of KDO2-lipid A biosynthesis)1791130.4415
GALACTITOLCAT-PWY (galactitol degradation)73630.4359
PWY-5669 (phosphatidylethanolamine biosynthesis I)4161880.4357
PWY-5148 (acyl-CoA hydrolysis)2271300.4305
P184-PWY (protocatechuate degradation I (meta-cleavage pathway))94730.4255
DAPLYSINESYN-PWY (lysine biosynthesis I)3421660.4189
PWY0-981 (taurine degradation IV)106780.4172
PWY-5084 (2-ketoglutarate dehydrogenase complex)3261610.4171
PWY0-1329 (succinate to cytochrome bo oxidase electron transfer)96730.4159
GLUCARDEG-PWY (D-glucarate degradation I)152980.4115
POLYISOPRENSYN-PWY (polyisoprenoid biosynthesis (E. coli))116820.4108
PYRIDOXSYN-PWY (pyridoxal 5'-phosphate biosynthesis I)4221860.4104
PWY0-1335 (NADH to cytochrome bo oxidase electron transfer)112800.4095
PWY-3162 (tryptophan degradation V (side chain pathway))94710.4061
P601-PWY (D-camphor degradation)95710.4014



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PAIRWISE GENOME CONTEXT SCORE MATRIX:

  EG11294   EG11293   EG10885   EG10785   EG10774   EG10427   
EG114040.9994240.999490.9997130.9999060.9996990.999155
EG112940.9998360.9996880.9998080.9998980.999382
EG112930.9994090.9996210.999770.999623
EG108850.9999530.9998530.998539
EG107850.9999180.999157
EG107740.999369
EG10427



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PAIRWISE BLAST SCORES:

  EG11404   EG11294   EG11293   EG10885   EG10785   EG10774   EG10427   
EG114040.0f0------
EG11294-0.0f0-----
EG11293--0.0f0----
EG10885---0.0f0---
EG10785----0.0f0--
EG10774-----0.0f0-
EG10427------0.0f0



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PATHWAYS OR PROTEIN COMPLEX MATCHES IN TARGET ORG:

For each case, all genes involved in the pathway or complex are listed. For each gene we list: a tag indicating whether the gene is part of the candidate list or not, the average and the minimum scores of the gene to the candidate list, the gene name, and its product names.



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GENOME CONTEXT INFORMATION:

Each row corresponds to a replicon in an organism, each column to a gene in the candidate. The second column indicates whether the organims was included in the list used to compute the genome context scores or not. Some organisms are not included because they are phylogenetically too similar to others already in the list.
The number in the matrix indicate the position of the homolog of the gene in the replicon. All numbers are relative to the smaller one, which is assigned a position of zero. Two columns with the same number indicate that the two genes matched the same gene in that organism.

Genome browser links for gene clusters

The links below opens a genome browser BioCyc page for each cluster of genes in the target genome. These pages shows the central gene of the cluster in the target genome and its best homolog in the reference genomes, for the genomes that contain homologs for at least 75% of the genes in the group. Only one genome per phylogenetic cluster of organisms is shown, to keep the list smaller.

EG10427 EG10774 EG11293 EG11294 (centered at EG11293)
EG10885 (centered at EG10885)
EG10785 EG11404 (centered at EG10785)


ORG:REPLICON:CIRC?\GENE  IN REF LIST  EG11404   EG11294   EG11293   EG10885   EG10785   EG10774   EG10427   
409/623418/623168/623341/623419/623414/623406/623
AAEO224324:0:Tyes-397--0-655
AAUR290340:2:Tyes---01-1368
AAVE397945:0:Tyes02675-2677267826762726
ABAC204669:0:Tyes-1999-1996-19970
ABAU360910:0:Tyes2432372362402412390
ABOR393595:0:Tyes0562138
ABUT367737:0:Tyes-----950
ACAU438753:0:Tyes154--1511520-
ACEL351607:0:Tyes-0-1761--56
ACRY349163:8:Tyes14352433-143314340-
ADEH290397:0:Tyes42544-1022393
AEHR187272:0:Tyes7325640
AFER243159:0:Tyes5971259959804
AFUL224325:0:Tyes------0
AHYD196024:0:Tyes9139099080912910907
ALAI441768:0:Tyes----10-
AMAR234826:0:Tyes-0-621---
AMAR329726:9:Tyes1809935--466404905
AMET293826:0:Tyes27764493--94930
ANAE240017:0:Tyes-57-0---
AORE350688:0:Tyes1318242-0266826691279
APER272557:0:Tyes------0
APHA212042:0:Tyes-0-678---
APLE416269:0:Tyes17507514620749378
APLE434271:0:Tno17207214690719386
ASAL382245:5:Tyes056879137
ASP1667:3:Tyes-0-67-1575
ASP232721:2:Tyes267645-4241430
ASP62928:0:Tyes056213234
ASP62977:0:Tyes0753752760761759750
ASP76114:2:Tyes1746145-1481491470
AVAR240292:3:Tyes26352900--245801707
BABO262698:1:Tno10610-105910601057-
BAMB339670:3:Tno14251125102514251525130
BAMB398577:3:Tno12231223112315231623140
BAMY326423:0:Tyes37400-67-2463
BANT260799:0:Tno53500--654363
BANT261594:2:Tno52500--764289
BANT568206:2:Tyes55260--764528
BANT592021:2:Tno55180--764518
BAPH198804:0:Tyes5232-05131-
BAPH372461:0:Tyes---03422-
BBAC264462:0:Tyes3----0-
BBAC360095:0:Tyes5750-572573571-
BBRO257310:0:Tyes5255195185225235210
BCAN483179:1:Tno11360-113411351133-
BCEN331271:2:Tno39810453410
BCEN331272:3:Tyes13228622852288228922870
BCER226900:1:Tyes53140--654338
BCER288681:0:Tno52070--654224
BCER315749:1:Tyes37810--652990
BCER405917:1:Tyes53030--654281
BCER572264:1:Tno53590--764350
BCIC186490:0:Tyes4109332-
BCLA66692:0:Tyes40990--752623
BFRA272559:1:Tyes31631425-0---
BFRA295405:0:Tno34471416-0---
BHAL272558:0:Tyes40850--753074
BHEN283166:0:Tyes7160-713-711-
BJAP224911:0:Fyes49420-494449434951-
BLIC279010:0:Tyes41690----2807
BLON206672:0:Tyes---0---
BMAL243160:0:Tno13-----0
BMAL243160:1:Tno-10342-
BMAL320388:0:Tno0-----18
BMAL320388:1:Tno-10342-
BMAL320389:0:Tyes0-----18
BMAL320389:1:Tyes-34102-
BMEL224914:1:Tno01078-214-
BMEL359391:1:Tno10360-103410351032-
BOVI236:1:Tyes-0-972973970-
BPAR257311:0:Tno4204144134174184160
BPER257313:0:Tyes2211221722182214221322150
BPET94624:0:Tyes089546547
BPSE272560:1:Tyes2559561022569
BPSE320372:1:Tno2946341022964
BPSE320373:1:Tno2890341022910
BPUM315750:0:Tyes37250--752450
BQUI283165:0:Tyes20-546-
BSP107806:2:Tyes5231-05130-
BSP36773:2:Tyes13257925782582258325810
BSP376:0:Tyes37970--37963789-
BSUB:0:Tyes42890-6752950
BSUI204722:1:Tyes11100-110811091106-
BSUI470137:1:Tno11380-113611371134-
BTHA271848:1:Tno2399341022408
BTHE226186:0:Tyes25540-----
BTHU281309:1:Tno50670--654118
BTHU412694:1:Tno47860--653887
BTRI382640:1:Tyes770-80-82-
BVIE269482:7:Tyes92393-2395239623940
BWEI315730:4:Tyes52410--654268
CABO218497:0:Tyes0329-----
CACE272562:1:Tyes20512837--315831620
CAULO:0:Tyes0872-6-8-
CBEI290402:0:Tyes-310--301191
CBLO203907:0:Tyes-2-12701-
CBLO291272:0:Tno-2313101-
CBOT36826:1:Tno-0--33813385-
CBOT441770:0:Tyes-0--33403344-
CBOT441771:0:Tno-0--32043208-
CBOT441772:1:Tno-0--34183422-
CBOT498213:1:Tno-0--34353439-
CBOT508765:1:Tyes2233280--202687
CBOT515621:2:Tyes-0--35813585-
CBOT536232:0:Tno-0--36903694-
CBUR227377:1:Tyes13-011121132
CBUR360115:1:Tno1819-18041817181818060
CBUR434922:2:Tno13-0111211918
CCAV227941:1:Tyes0350-----
CCHL340177:0:Tyes0765--514583949
CCON360104:2:Tyes----0816264
CCUR360105:0:Tyes0----877484
CDES477974:0:Tyes-0-12-111252
CDIF272563:1:Tyes0916---862-
CDIP257309:0:Tyes------0
CEFF196164:0:Fyes----581-0
CFEL264202:1:Tyes0------
CFET360106:0:Tyes-----7710
CGLU196627:0:Tyes---522--0
CHOM360107:1:Tyes-----3570
CHUT269798:0:Tyes1861-----0
CHYD246194:0:Tyes0157-164-1621149
CJAP155077:0:Tyes0452139
CJEI306537:0:Tyes---0--421
CJEJ192222:0:Tyes-----3540
CJEJ195099:0:Tno-----3330
CJEJ354242:2:Tyes358----3460
CJEJ360109:0:Tyes-----0461
CJEJ407148:0:Tno374----3620
CKLU431943:1:Tyes10053515---0494
CMAQ397948:0:Tyes------0
CMET456442:0:Tyes------0
CMIC31964:2:Tyes---10-369
CMIC443906:2:Tyes---17261725-0
CMUR243161:1:Tyes1790-----
CNOV386415:0:Tyes8951921--401654
CPEL335992:0:Tyes---1-0-
CPER195102:1:Tyes430790---11220
CPER195103:0:Tno421762---10480
CPER289380:3:Tyes404741---10050
CPHY357809:0:Tyes-2403----0
CPRO264201:0:Fyes-1268----0
CPSY167879:0:Tyes6214530
CRUT413404:0:Tyes9032-9019020574
CSAL290398:0:Tyes0562138
CSP501479:7:Fyes-0---713-
CSP501479:8:Fyes582---0--
CSP78:2:Tyes41--0-4-
CTEP194439:0:Tyes01191---10571122
CTET212717:0:Tyes-89---0489
CTRA471472:0:Tyes0------
CTRA471473:0:Tno0------
CVES412965:0:Tyes8191-8178180539
CVIO243365:0:Tyes4079408440854081408040820
DARO159087:0:Tyes4540394344420
DDES207559:0:Tyes---1031041020
DETH243164:0:Tyes-0--187--
DGEO319795:1:Tyes-0--1867-1939
DHAF138119:0:Tyes4939---2602114
DNOD246195:0:Tyes1210--1025
DOLE96561:0:Tyes-0-342428
DPSY177439:2:Tyes02003-1999-20002350
DRAD243230:3:Tyes-226--0-169
DRED349161:0:Tyes12090--1562092
DSHI398580:5:Tyes72147-302004-
DSP216389:0:Tyes-0--188--
DSP255470:0:Tno-0--190--
DVUL882:1:Tyes---1131121140
ECAN269484:0:Tyes-230-0---
ECAR218491:0:Tyes045561136
ECHA205920:0:Tyes-585-0---
ECOL199310:0:Tno0561042147
ECOL316407:0:Tno056998147
ECOL331111:6:Tno0671093158
ECOL362663:0:Tno056975147
ECOL364106:1:Tno0561064147
ECOL405955:2:Tyes056-147
ECOL409438:6:Tyes0561214147
ECOL413997:0:Tno056927147
ECOL439855:4:Tno721398630
ECOL469008:0:Tno9229179160921918915
ECOL481805:0:Tno9509459440949946943
ECOL585034:0:Tno0561034147
ECOL585035:0:Tno0561012147
ECOL585055:0:Tno0561127147
ECOL585056:2:Tno0561028147
ECOL585057:0:Tno056767147
ECOL585397:0:Tno0561221147
ECOL83334:0:Tno0561398147
ECOLI:0:Tno0561019147
ECOO157:0:Tno0561351147
EFAE226185:3:Tyes30420---2918-
EFER585054:1:Tyes721517630
ELIT314225:0:Tyes0223-541614-
ERUM254945:0:Tyes---0---
ERUM302409:0:Tno---0---
ESP42895:1:Tyes721447630
FALN326424:0:Tyes---51615160-0
FJOH376686:0:Tyes1367--0--2648
FMAG334413:1:Tyes---0---
FNOD381764:0:Tyes-----0-
FNUC190304:0:Tyes719-----0
FPHI484022:1:Tyes94101938942937409
FRANT:0:Tno47393924694744680
FSP106370:0:Tyes---34613460-0
FSP1855:0:Tyes---01-5273
FSUC59374:0:Tyes7022619----0
FTUL351581:0:Tno714107097157081392
FTUL393011:0:Tno658106556596541258
FTUL393115:0:Tyes46591904614664600
FTUL401614:0:Tyes852108558518561389
FTUL418136:0:Tno675131013096796746800
FTUL458234:0:Tno698106956996941307
GBET391165:0:Tyes4700-468469466-
GFOR411154:0:Tyes0--2024--1745
GKAU235909:1:Tyes35480--7-2694
GMET269799:1:Tyes05---3386
GOXY290633:5:Tyes182586-1771780-
GSUL243231:0:Tyes40-2-12611
GTHE420246:1:Tyes33390-6752495
GURA351605:0:Tyes32983303--329933010
GVIO251221:0:Tyes31690--4398071125
HACI382638:1:Tyes-----0643
HARS204773:0:Tyes2552254825472550255125490
HAUR316274:2:Tyes----0-3257
HBUT415426:0:Tyes------0
HCHE349521:0:Tyes0562139
HDUC233412:0:Tyes05395402131538-
HHAL349124:0:Tyes0562138
HHEP235279:0:Tyes0----164354
HINF281310:0:Tyes08318328081830-
HINF374930:0:Tyes18058048260806-
HINF71421:0:Tno011961195121711197-
HMAR272569:8:Tyes------0
HMOD498761:0:Tyes0231--245242953
HMUK485914:1:Tyes------0
HNEP81032:0:Tyes1539313-1023-0-
HPY:0:Tno-----5060
HPYL357544:1:Tyes-----4880
HPYL85963:0:Tno-----4490
HSAL478009:4:Tyes------0
HSOM205914:1:Tyes04944953691493306
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