CANDIDATE ID: 320

CANDIDATE ID: 320

NUMBER OF GENES: 7
AVERAGE SCORE:    9.9962710e-1 (range=[0.0,1.0])
AVERAGE MINIMUM BLAST P-VAL:    1.0000000e+0

Gene List
List of organisms containing most genes from the group
    Phylogenetic tree highlighting these organisms (opens new page)
List of organisms containing very few or no genes from the group
List of organisms enriched for group
List of organisms depleted for group
Phylogenetic profile similarity with known pathways
Pairwise genome context scores
Pairwise Blast scores
Pathway or protein complex matches in target organism
Genome context matrix
    Genes and their orthologs in genome browser BioCyc pages




GENE LIST:

- G7355 (ypjD) (b2611)
   Products of gene:
     - G7355-MONOMER (predicted inner membrane protein)

- EG12442 (yfjD) (b2612 (obsolete))
   Products of gene:
     - G7356-MONOMER (predicted inner membrane protein)

- EG11153 (rimM) (b2608)
   Products of gene:
     - EG11153-MONOMER (ribosome maturation protein)

- EG11023 (trmD) (b2607)
   Products of gene:
     - EG11023-MONOMER (TrmD)
     - CPLX0-3950 (tRNA m1G37 methyltransferase)
       Reactions:
        a tRNA + S-adenosyl-L-methionine  =  S-adenosyl-L-homocysteine + tRNA containing N1-methylguanine

- EG10915 (rpsP) (b2609)
   Products of gene:
     - EG10915-MONOMER (30S ribosomal subunit protein S16)
     - CPLX0-3953 (30S ribosomal subunit)
       Regulatees:
        TU00345 (rpsB-tsf)
     - CPLX0-3964 (ribosome)

- EG10880 (rplS) (b2606)
   Products of gene:
     - EG10880-MONOMER (50S ribosomal subunit protein L19)
     - CPLX0-3962 (50S ribosomal subunit)
     - CPLX0-3964 (ribosome)

- EG10300 (ffh) (b2610)
   Products of gene:
     - EG10300-MONOMER (protein component of the signal recognition particle (SRP))
     - SRP-CPLX (Signal Recognition Particle Protein Translocation System)



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ORGANISMS CONTAINING AT LEAST 6 GENES FROM THE GROUP:

Total number of orgs: 245
Effective number of orgs (counting one per cluster within 468 clusters): 164

Organism list
Homologs in each organism in the list
Features enriched in organism list


Follow (ncbi) link, when present, to find the set of organism features for each organism
Org ID  Org Name  # genes in group found in org  
YPSE349747 ncbi Yersinia pseudotuberculosis IP 317587
YPSE273123 ncbi Yersinia pseudotuberculosis IP 329537
YPES386656 ncbi Yersinia pestis Pestoides F7
YPES377628 ncbi Yersinia pestis Nepal5167
YPES360102 ncbi Yersinia pestis Antiqua7
YPES349746 ncbi Yersinia pestis Angola7
YPES214092 ncbi Yersinia pestis CO927
YPES187410 ncbi Yersinia pestis KIM 107
YENT393305 ncbi Yersinia enterocolitica enterocolitica 80817
XORY360094 ncbi Xanthomonas oryzae pv. oryzae PXO99A7
XORY342109 ncbi Xanthomonas oryzae pv. oryzae MAFF 3110187
XORY291331 ncbi Xanthomonas oryzae pv. oryzae KACC103317
XFAS405440 ncbi Xylella fastidiosa M127
XFAS183190 ncbi Xylella fastidiosa Temecula17
XFAS160492 ncbi Xylella fastidiosa 9a5c7
XCAM487884 Xanthomonas campestris pv. paulliniae7
XCAM316273 ncbi Xanthomonas campestris pv. vesicatoria str. 85-107
XCAM314565 ncbi Xanthomonas campestris pv. campestris str. 80047
XCAM190485 ncbi Xanthomonas campestris pv. campestris str. ATCC 339137
XAXO190486 ncbi Xanthomonas axonopodis pv. citri str. 3067
VVUL216895 ncbi Vibrio vulnificus CMCP67
VVUL196600 ncbi Vibrio vulnificus YJ0167
VPAR223926 ncbi Vibrio parahaemolyticus RIMD 22106337
VFIS312309 ncbi Vibrio fischeri ES1147
VEIS391735 ncbi Verminephrobacter eiseniae EF01-26
VCHO345073 ncbi Vibrio cholerae O3957
VCHO ncbi Vibrio cholerae O1 biovar El Tor str. N169617
TTUR377629 ncbi Teredinibacter turnerae T79017
TSP28240 Thermotoga sp.6
TPET390874 ncbi Thermotoga petrophila RKU-16
TMAR243274 ncbi Thermotoga maritima MSB86
TCRU317025 ncbi Thiomicrospira crunogena XCL-27
STYP99287 ncbi Salmonella enterica enterica serovar Typhimurium str. LT27
SSUI391295 ncbi Streptococcus suis 05ZYH336
SSP94122 ncbi Shewanella sp. ANA-37
SSON300269 ncbi Shigella sonnei Ss0467
SSED425104 ncbi Shewanella sediminis HAW-EB37
SPRO399741 ncbi Serratia proteamaculans 5687
SPNE488221 ncbi Streptococcus pneumoniae 705856
SPNE487214 ncbi Streptococcus pneumoniae Hungary19A-66
SPNE170187 ncbi Streptococcus pneumoniae G546
SPNE1313 Streptococcus pneumoniae6
SPEA398579 ncbi Shewanella pealeana ATCC 7003457
SONE211586 ncbi Shewanella oneidensis MR-17
SMUT210007 ncbi Streptococcus mutans UA1596
SMEL266834 ncbi Sinorhizobium meliloti 10216
SMED366394 ncbi Sinorhizobium medicae WSM4196
SLOI323850 ncbi Shewanella loihica PV-47
SHIGELLA ncbi Shigella flexneri 2a str. 2457T7
SHAL458817 ncbi Shewanella halifaxensis HAW-EB47
SGOR29390 Streptococcus gordonii Challis6
SGLO343509 ncbi Sodalis glossinidius morsitans7
SFUM335543 ncbi Syntrophobacter fumaroxidans MPOB6
SFLE373384 ncbi Shigella flexneri 5 str. 84017
SFLE198214 ncbi Shigella flexneri 2a str. 3017
SENT454169 ncbi Salmonella enterica enterica serovar Heidelberg str. SL4767
SENT321314 ncbi Salmonella enterica enterica serovar Choleraesuis str. SC-B677
SENT295319 ncbi Salmonella enterica enterica serovar Paratyphi A str. ATCC 91507
SENT220341 ncbi Salmonella enterica enterica serovar Typhi str. CT187
SENT209261 ncbi Salmonella enterica enterica serovar Typhi str. Ty27
SDYS300267 ncbi Shigella dysenteriae Sd1977
SDEN318161 ncbi Shewanella denitrificans OS2177
SDEG203122 ncbi Saccharophagus degradans 2-407
SBOY300268 ncbi Shigella boydii Sb2277
SBAL402882 ncbi Shewanella baltica OS1857
SBAL399599 ncbi Shewanella baltica OS1957
RSP357808 ncbi Roseiflexus sp. RS-16
RSOL267608 ncbi Ralstonia solanacearum GMI10007
RRUB269796 ncbi Rhodospirillum rubrum ATCC 111706
RPAL316058 ncbi Rhodopseudomonas palustris HaA26
RPAL316057 ncbi Rhodopseudomonas palustris BisB56
RPAL316056 ncbi Rhodopseudomonas palustris BisB186
RPAL258594 ncbi Rhodopseudomonas palustris CGA0096
RMET266264 ncbi Ralstonia metallidurans CH347
RLEG216596 ncbi Rhizobium leguminosarum bv. viciae 38416
RFER338969 ncbi Rhodoferax ferrireducens T1187
REUT381666 ncbi Ralstonia eutropha H167
REUT264198 ncbi Ralstonia eutropha JMP1347
RCAS383372 ncbi Roseiflexus castenholzii DSM 139416
PSYR223283 ncbi Pseudomonas syringae pv. tomato str. DC30007
PSYR205918 ncbi Pseudomonas syringae pv. syringae B728a7
PSTU379731 ncbi Pseudomonas stutzeri A15017
PSP56811 Psychrobacter sp.6
PSP312153 ncbi Polynucleobacter necessarius asymbioticus QLW-P1DMWA-17
PSP296591 ncbi Polaromonas sp. JS6666
PPUT76869 ncbi Pseudomonas putida GB-17
PPUT351746 ncbi Pseudomonas putida F17
PPUT160488 ncbi Pseudomonas putida KT24407
PPRO298386 ncbi Photobacterium profundum SS97
PNAP365044 ncbi Polaromonas naphthalenivorans CJ27
PMUL272843 ncbi Pasteurella multocida multocida Pm706
PMEN399739 ncbi Pseudomonas mendocina ymp7
PLUM243265 ncbi Photorhabdus luminescens laumondii TTO17
PING357804 ncbi Psychromonas ingrahamii 377
PHAL326442 ncbi Pseudoalteromonas haloplanktis TAC1257
PFLU220664 ncbi Pseudomonas fluorescens Pf-57
PFLU216595 ncbi Pseudomonas fluorescens SBW257
PFLU205922 ncbi Pseudomonas fluorescens Pf0-17
PENT384676 ncbi Pseudomonas entomophila L487
PCRY335284 ncbi Psychrobacter cryohalolentis K56
PCAR338963 ncbi Pelobacter carbinolicus DSM 23806
PATL342610 ncbi Pseudoalteromonas atlantica T6c7
PARC259536 ncbi Psychrobacter arcticus 273-46
PAER208964 ncbi Pseudomonas aeruginosa PAO17
PAER208963 ncbi Pseudomonas aeruginosa UCBPP-PA147
OIHE221109 ncbi Oceanobacillus iheyensis HTE8316
OCAR504832 ncbi Oligotropha carboxidovorans OM56
NOCE323261 ncbi Nitrosococcus oceani ATCC 197077
NMUL323848 ncbi Nitrosospira multiformis ATCC 251966
NMEN374833 ncbi Neisseria meningitidis 0534426
NMEN272831 ncbi Neisseria meningitidis FAM186
NMEN122587 ncbi Neisseria meningitidis Z24917
NMEN122586 ncbi Neisseria meningitidis MC586
NGON242231 ncbi Neisseria gonorrhoeae FA 10906
NEUT335283 ncbi Nitrosomonas eutropha C917
NEUR228410 ncbi Nitrosomonas europaea ATCC 197187
MSUC221988 ncbi Mannheimia succiniciproducens MBEL55E7
MSP400668 ncbi Marinomonas sp. MWYL17
MSP266779 ncbi Chelativorans sp. BNC16
MPET420662 ncbi Methylibium petroleiphilum PM16
MLOT266835 ncbi Mesorhizobium loti MAFF3030996
MFLA265072 ncbi Methylobacillus flagellatus KT7
MCAP243233 ncbi Methylococcus capsulatus Bath6
MAQU351348 ncbi Marinobacter aquaeolei VT87
LSAK314315 ncbi Lactobacillus sakei sakei 23K6
LPNE400673 ncbi Legionella pneumophila Corby6
LPNE297246 ncbi Legionella pneumophila Paris6
LPNE297245 ncbi Legionella pneumophila Lens6
LPNE272624 ncbi Legionella pneumophila pneumophila Philadelphia 16
LINN272626 ncbi Listeria innocua Clip112626
LGAS324831 ncbi Lactobacillus gasseri ATCC 333236
LCHO395495 ncbi Leptothrix cholodnii SP-66
LCAS321967 ncbi Lactobacillus casei ATCC 3346
KPNE272620 ncbi Klebsiella pneumoniae pneumoniae MGH 785787
JSP375286 ncbi Janthinobacterium sp. Marseille6
ILOI283942 ncbi Idiomarina loihiensis L2TR7
HSOM228400 ncbi Haemophilus somnus 23367
HSOM205914 ncbi Haemophilus somnus 129PT7
HINF71421 ncbi Haemophilus influenzae Rd KW206
HINF374930 ncbi Haemophilus influenzae PittEE6
HINF281310 ncbi Haemophilus influenzae 86-028NP6
HHAL349124 ncbi Halorhodospira halophila SL16
HDUC233412 ncbi Haemophilus ducreyi 35000HP6
HCHE349521 ncbi Hahella chejuensis KCTC 23967
HAUR316274 ncbi Herpetosiphon aurantiacus ATCC 237796
HARS204773 ncbi Herminiimonas arsenicoxydans6
GURA351605 ncbi Geobacter uraniireducens Rf46
GSUL243231 ncbi Geobacter sulfurreducens PCA6
GMET269799 ncbi Geobacter metallireducens GS-156
FTUL458234 ncbi Francisella tularensis holarctica FTNF002-006
FTUL418136 ncbi Francisella tularensis tularensis WY96-34186
FTUL401614 ncbi Francisella novicida U1126
FTUL393115 ncbi Francisella tularensis tularensis FSC1986
FTUL393011 ncbi Francisella tularensis holarctica OSU186
FTUL351581 Francisella tularensis holarctica FSC2006
FRANT ncbi Francisella tularensis tularensis SCHU S46
FPHI484022 ncbi Francisella philomiragia philomiragia ATCC 250176
FNOD381764 ncbi Fervidobacterium nodosum Rt17-B16
ESP42895 Enterobacter sp.7
EFER585054 ncbi Escherichia fergusonii ATCC 354697
EFAE226185 ncbi Enterococcus faecalis V5836
ECOO157 ncbi Escherichia coli O157:H7 EDL9337
ECOL83334 Escherichia coli O157:H77
ECOL585397 ncbi Escherichia coli ED1a7
ECOL585057 ncbi Escherichia coli IAI397
ECOL585056 ncbi Escherichia coli UMN0267
ECOL585055 ncbi Escherichia coli 559897
ECOL585035 ncbi Escherichia coli S887
ECOL585034 ncbi Escherichia coli IAI17
ECOL481805 ncbi Escherichia coli ATCC 87397
ECOL469008 ncbi Escherichia coli BL21(DE3)7
ECOL439855 ncbi Escherichia coli SMS-3-57
ECOL413997 ncbi Escherichia coli B str. REL6067
ECOL409438 ncbi Escherichia coli SE117
ECOL405955 ncbi Escherichia coli APEC O17
ECOL364106 ncbi Escherichia coli UTI897
ECOL362663 ncbi Escherichia coli 5367
ECOL331111 ncbi Escherichia coli E24377A7
ECOL316407 ncbi Escherichia coli K-12 substr. W31107
ECOL199310 ncbi Escherichia coli CFT0737
ECAR218491 ncbi Pectobacterium atrosepticum SCRI10436
DNOD246195 ncbi Dichelobacter nodosus VCS1703A6
DHAF138119 ncbi Desulfitobacterium hafniense Y516
DARO159087 ncbi Dechloromonas aromatica RCB6
CVIO243365 ncbi Chromobacterium violaceum ATCC 124727
CVES412965 ncbi Candidatus Vesicomyosocius okutanii HA7
CSAL290398 ncbi Chromohalobacter salexigens DSM 30437
CRUT413404 ncbi Candidatus Ruthia magnifica Cm (Calyptogena magnifica)7
CPSY167879 ncbi Colwellia psychrerythraea 34H7
CPER195103 ncbi Clostridium perfringens ATCC 131246
CPER195102 ncbi Clostridium perfringens 136
CKLU431943 ncbi Clostridium kluyveri DSM 5556
CJAP155077 Cellvibrio japonicus7
CDIF272563 ncbi Clostridium difficile 6306
CDES477974 ncbi Candidatus Desulforudis audaxviator MP104C6
CBUR434922 ncbi Coxiella burnetii Dugway 5J108-1117
CBUR360115 ncbi Coxiella burnetii RSA 3317
CBUR227377 ncbi Coxiella burnetii RSA 4937
BWEI315730 ncbi Bacillus weihenstephanensis KBAB46
BTHU412694 ncbi Bacillus thuringiensis Al Hakam6
BTHU281309 ncbi Bacillus thuringiensis serovar konkukian str. 97-276
BTHA271848 ncbi Burkholderia thailandensis E2646
BSUB ncbi Bacillus subtilis subtilis 1686
BSP376 Bradyrhizobium sp.6
BSP36773 Burkholderia sp.6
BPUM315750 ncbi Bacillus pumilus SAFR-0326
BPSE320373 ncbi Burkholderia pseudomallei 6686
BPSE320372 ncbi Burkholderia pseudomallei 1710b6
BPSE272560 ncbi Burkholderia pseudomallei K962436
BPET94624 Bordetella petrii6
BPER257313 ncbi Bordetella pertussis Tohama I6
BPAR257311 ncbi Bordetella parapertussis 128226
BMAL320389 ncbi Burkholderia mallei NCTC 102476
BMAL320388 ncbi Burkholderia mallei SAVP16
BMAL243160 ncbi Burkholderia mallei ATCC 233446
BLIC279010 ncbi Bacillus licheniformis ATCC 145806
BJAP224911 ncbi Bradyrhizobium japonicum USDA 1106
BCER572264 ncbi Bacillus cereus 03BB1026
BCER405917 Bacillus cereus W6
BCER315749 ncbi Bacillus cytotoxicus NVH 391-986
BCER288681 ncbi Bacillus cereus E33L6
BCER226900 ncbi Bacillus cereus ATCC 145796
BCEN331272 ncbi Burkholderia cenocepacia HI24246
BCEN331271 ncbi Burkholderia cenocepacia AU 10546
BBRO257310 ncbi Bordetella bronchiseptica RB506
BANT592021 ncbi Bacillus anthracis A02486
BANT568206 ncbi Bacillus anthracis CDC 6846
BANT261594 ncbi Bacillus anthracis Ames Ancestor6
BANT260799 ncbi Bacillus anthracis Sterne6
BAMY326423 ncbi Bacillus amyloliquefaciens FZB426
BAMB398577 ncbi Burkholderia ambifaria MC40-66
BAMB339670 ncbi Burkholderia ambifaria AMMD6
ASP76114 ncbi Aromatoleum aromaticum EbN16
ASP62977 ncbi Acinetobacter sp. ADP16
ASP62928 ncbi Azoarcus sp. BH727
ASP232721 ncbi Acidovorax sp. JS427
ASAL382245 ncbi Aeromonas salmonicida salmonicida A4497
APLE434271 ncbi Actinobacillus pleuropneumoniae serovar 3 str. JL037
APLE416269 ncbi Actinobacillus pleuropneumoniae L207
AORE350688 ncbi Alkaliphilus oremlandii OhILAs6
AHYD196024 Aeromonas hydrophila dhakensis7
AFER243159 ncbi Acidithiobacillus ferrooxidans ATCC 232706
AEHR187272 ncbi Alkalilimnicola ehrlichii MLHE-17
ABOR393595 ncbi Alcanivorax borkumensis SK27
ABAU360910 ncbi Bordetella avium 197N6


Names of the homologs of the genes in the group in each of these orgs
  G7355   EG12442   EG11153   EG11023   EG10915   EG10880   EG10300   
YPSE349747 YPSIP31758_3231YPSIP31758_3232YPSIP31758_3227YPSIP31758_3226YPSIP31758_3228YPSIP31758_3225YPSIP31758_3230
YPSE273123 YPTB0832YPTB0831YPTB0835YPTB0836YPTB0834YPTB0837YPTB0833
YPES386656 YPDSF_3063YPDSF_3062YPDSF_3067YPDSF_3068YPDSF_3066YPDSF_3069YPDSF_3064
YPES377628 YPN_0800YPN_0799YPN_0804YPN_0805YPN_0803YPN_0806YPN_0801
YPES360102 YPA_2847YPA_2846YPA_2850YPA_2851YPA_2849YPA_2852YPA_2848
YPES349746 YPANGOLA_A0885YPANGOLA_A0889YPANGOLA_A0881YPANGOLA_A0880YPANGOLA_A0882YPANGOLA_A0879YPANGOLA_A0884
YPES214092 YPO3297YPO3298YPO3294YPO3293YPO3295YPO3292YPO3296
YPES187410 Y0891Y0890Y0895Y0896Y0894Y0897Y0892
YENT393305 YE0841YE0840YE0844YE0845YE0843YE0846YE0842
XORY360094 XOOORF_4000XOOORF_1935XOOORF_3991XOOORF_3990XOOORF_3992XOOORF_3989XOOORF_3996
XORY342109 XOO1213XOO2611XOO1220XOO1221XOO1219XOO1222XOO1215
XORY291331 XOO1319XOO2771XOO1326XOO1327XOO1325XOO1328XOO1321
XFAS405440 XFASM12_0144XFASM12_1951XFASM12_0088XFASM12_0089XFASM12_0087XFASM12_0090XFASM12_0057
XFAS183190 PD_0139PD_1783PD_0082PD_0083PD_0081PD_0084PD_0055
XFAS160492 XF0171XF0901XF0108XF0109XF0107XF0110XF0073
XCAM487884 XCC-B100_3146XCC-B100_1839XCC-B100_3139XCC-B100_3138XCC-B100_3140XCC-B100_3137XCC-B100_3145
XCAM316273 XCAORF_1429XCAORF_2607XCAORF_1436XCAORF_1437XCAORF_1435XCAORF_1438XCAORF_1430
XCAM314565 XC_3049XC_1783XC_3042XC_3041XC_3043XC_3040XC_3048
XCAM190485 XCC1193XCC2333XCC1200XCC1201XCC1199XCC1202XCC1194
XAXO190486 XAC1288XAC2466XAC1293XAC1294XAC1292XAC1295XAC1289
VVUL216895 VV1_1610VV1_1609VV1_1616VV1_1617VV1_1615VV1_1618VV1_1612
VVUL196600 VV2790VV2791VV2787VV2786VV2788VV2785VV2789
VPAR223926 VP2535VP2536VP2532VP2531VP2533VP2530VP2534
VFIS312309 VF0547VF0546VF0550VF0551VF0549VF0552VF0548
VEIS391735 VEIS_1501VEIS_3940VEIS_3941VEIS_3939VEIS_0827VEIS_1502
VCHO345073 VC0395_A0093VC0395_A0092VC0395_A0096VC0395_A0097VC0395_A0095VC0395_A0098VC0395_A0094
VCHO VC0559VC0558VC0562VC0563VC0561VC0564VC0560
TTUR377629 TERTU_1157TERTU_1156TERTU_1160TERTU_1161TERTU_1159TERTU_1162TERTU_1158
TSP28240 TRQ2_0082TRQ2_1231TRQ2_1232TRQ2_1229TRQ2_1234TRQ2_1228
TPET390874 TPET_0082TPET_1224TPET_1223TPET_1226TPET_1221TPET_1227
TMAR243274 TM_0845TM_1568TM_1569TM_1566TM_1571TM_1565
TCRU317025 TCR_0997TCR_0996TCR_0648TCR_0649TCR_0647TCR_0650TCR_0998
STYP99287 STM2678STM2679STM2675STM2674STM2676STM2673STM2677
SSUI391295 SSU05_1668SSU05_0819SSU05_0820SSU05_0796SSU05_0352SSU05_0876
SSP94122 SHEWANA3_3019SHEWANA3_3020SHEWANA3_3016SHEWANA3_3015SHEWANA3_3017SHEWANA3_3014SHEWANA3_3018
SSON300269 SSO_2768SSO_2769SSO_2765SSO_2764SSO_2766SSO_2763SSO_2767
SSED425104 SSED_1157SSED_1156SSED_1160SSED_1161SSED_1159SSED_1162SSED_1158
SPRO399741 SPRO_0850SPRO_0849SPRO_0853SPRO_0854SPRO_0852SPRO_0855SPRO_0851
SPNE488221 SP70585_2035SP70585_0820SP70585_0821SP70585_0817SP70585_1358SP70585_1352
SPNE487214 SPH_2105SPH_0876SPH_0877SPH_0873SPH_1435SPH_1428
SPNE170187 SPN09058SPN04160SPN04161SPN04157SPN10091SPN10084
SPNE1313 SPJ_1956SPJ_0715SPJ_0716SPJ_0712SPJ_1209SPJ_1202
SPEA398579 SPEA_1047SPEA_1046SPEA_1050SPEA_1051SPEA_1049SPEA_1052SPEA_1048
SONE211586 SO_1355SO_1354SO_1358SO_1359SO_1357SO_1360SO_1356
SMUT210007 SMU_1693SMU_867SMU_868SMU_865SMU_1288SMU_1060
SMEL266834 SMC00697SMC03860SMC03861SMC03859SMC03863SMC03857
SMED366394 SMED_2563SMED_3098SMED_3099SMED_3097SMED_3101SMED_3095
SLOI323850 SHEW_1061SHEW_1060SHEW_1064SHEW_1065SHEW_1063SHEW_1066SHEW_1062
SHIGELLA S2848YFJDYFJATRMDRPSPRPLSFFH
SHAL458817 SHAL_1095SHAL_1094SHAL_1098SHAL_1099SHAL_1097SHAL_1100SHAL_1096
SGOR29390 SGO_1655SGO_1316SGO_1315SGO_1323SGO_1383SGO_1123
SGLO343509 SG0544SG0543SG0547SG0548SG0546SG0549SG0545
SFUM335543 SFUM_0722SFUM_3041SFUM_3042SFUM_3039SFUM_3044SFUM_3038
SFLE373384 SFV_2859SFV_2858SFV_2862SFV_2863SFV_2861SFV_2864SFV_2860
SFLE198214 AAN44166.1AAN44167.1AAN44163.1AAN44162.1AAN44164.1AAN44161.1AAN44165.1
SENT454169 SEHA_C2894SEHA_C2895SEHA_C2891SEHA_C2890SEHA_C2892SEHA_C2889SEHA_C2893
SENT321314 SCH_2679SCH_2680SCH_2676SCH_2675SCH_2677SCH_2674SCH_2678
SENT295319 SPA2537SPA2538SPA2534SPA2533SPA2535SPA2532SPA2536
SENT220341 STY2865STY2866STY2862STY2861STY2863STY2860STY2864
SENT209261 T2633T2634T2630T2629T2631T2628T2632
SDYS300267 SDY_2785SDY_2786SDY_2782SDY_2781SDY_2783SDY_2780SDY_2784
SDEN318161 SDEN_2756SDEN_2757SDEN_2753SDEN_2752SDEN_2754SDEN_2751SDEN_2755
SDEG203122 SDE_1201SDE_1200SDE_1204SDE_1205SDE_1203SDE_1206SDE_1202
SBOY300268 SBO_2747SBO_2748SBO_2744SBO_2743SBO_2745SBO_2742SBO_2746
SBAL402882 SHEW185_1252SHEW185_1251SHEW185_1255SHEW185_1256SHEW185_1254SHEW185_1257SHEW185_1253
SBAL399599 SBAL195_1285SBAL195_1284SBAL195_1288SBAL195_1289SBAL195_1287SBAL195_1290SBAL195_1286
RSP357808 ROSERS_3197ROSERS_1289ROSERS_3686ROSERS_1287ROSERS_2781ROSERS_1286
RSOL267608 RSC2810RSC2824RSC0934RSC0935RSC0933RSC0936RSC2811
RRUB269796 RRU_A3773RRU_A1186RRU_A1187RRU_A1185RRU_A1188RRU_A1184
RPAL316058 RPB_0537RPB_0351RPB_0350RPB_0352RPB_0349RPB_0353
RPAL316057 RPD_0292RPD_0508RPD_0507RPD_0509RPD_0506RPD_0510
RPAL316056 RPC_0534RPC_0223RPC_0224RPC_0222RPC_0225RPC_0221
RPAL258594 RPA0502RPA0243RPA0242RPA0244RPA0241RPA0245
RMET266264 RMET_3093RMET_0450RMET_0749RMET_0750RMET_0748RMET_0751RMET_3094
RLEG216596 RL4351RL4550RL4551RL4549RL4552RL4547
RFER338969 RFER_3343RFER_3698RFER_1403RFER_1404RFER_1402RFER_1405RFER_3342
REUT381666 H16_A3240H16_A0525H16_A0895H16_A0896H16_A0894H16_A0897H16_A3241
REUT264198 REUT_A2946REUT_A0511REUT_A2539REUT_A2538REUT_A2540REUT_A2537REUT_A2947
RCAS383372 RCAS_2925RCAS_1664RCAS_1332RCAS_1666RCAS_2561RCAS_1667
PSYR223283 PSPTO_1471PSPTO_1470PSPTO_1474PSPTO_1475PSPTO_1473PSPTO_1476PSPTO_1472
PSYR205918 PSYR_1280PSYR_1279PSYR_1283PSYR_1284PSYR_1282PSYR_1285PSYR_1281
PSTU379731 PST_1189PST_1188PST_1192PST_1193PST_1191PST_1194PST_1190
PSP56811 PSYCPRWF_0591PSYCPRWF_0201PSYCPRWF_0202PSYCPRWF_0200PSYCPRWF_0203PSYCPRWF_0592
PSP312153 PNUC_0202PNUC_0187PNUC_0518PNUC_0519PNUC_0517PNUC_0520PNUC_0201
PSP296591 BPRO_4209BPRO_1691BPRO_1692BPRO_1690BPRO_1693BPRO_1114
PPUT76869 PPUTGB1_1065PPUTGB1_1064PPUTGB1_1068PPUTGB1_1069PPUTGB1_1067PPUTGB1_1070PPUTGB1_1066
PPUT351746 PPUT_4261PPUT_4262PPUT_4258PPUT_4257PPUT_4259PPUT_4256PPUT_4260
PPUT160488 PP_1460PP_1459PP_1463PP_1464PP_1462PP_1465PP_1461
PPRO298386 PBPRA3043PBPRA3044PBPRA3040PBPRA3039PBPRA3041PBPRA3038PBPRA3042
PNAP365044 PNAP_3380PNAP_0439PNAP_1462PNAP_1463PNAP_1461PNAP_1464PNAP_3379
PMUL272843 PM1184PM1185PM1296PM1297PM1298PM1183
PMEN399739 PMEN_3403PMEN_3404PMEN_3400PMEN_3399PMEN_3401PMEN_3398PMEN_3402
PLUM243265 PLU1255PLU1254PLU1258PLU1259PLU1257PLU1260PLU1256
PING357804 PING_3369PING_3370PING_3366PING_3365PING_3367PING_3364PING_3368
PHAL326442 PSHAA0940PSHAA0939PSHAA0945PSHAA0946PSHAA0944PSHAA0947PSHAA0942
PFLU220664 PFL_1092PFL_1091PFL_1095PFL_1096PFL_1094PFL_1097PFL_1093
PFLU216595 PFLU5014PFLU5015PFLU5011PFLU5010PFLU5012PFLU5009PFLU5013
PFLU205922 PFL_1017PFL_1016PFL_1020PFL_1021PFL_1019PFL_1022PFL_1018
PENT384676 PSEEN4262PSEEN4263PSEEN4259PSEEN4258PSEEN4260PSEEN4257PSEEN4261
PCRY335284 PCRYO_1986PCRYO_2321PCRYO_2320PCRYO_2322PCRYO_2319PCRYO_1985
PCAR338963 PCAR_2212PCAR_2222PCAR_2221PCAR_2224PCAR_2219PCAR_2225
PATL342610 PATL_1669PATL_1668PATL_1578PATL_1579PATL_1577PATL_1580PATL_1670
PARC259536 PSYC_1708PSYC_2018PSYC_2017PSYC_2019PSYC_2016PSYC_1707
PAER208964 PA3747PA3748PA3744PA3743PA3745PA3742PA3746
PAER208963 PA14_15940PA14_15930PA14_15980PA14_15990PA14_15970PA14_16000PA14_15960
OIHE221109 OB3438OB1535OB1536OB1532OB1537OB1531
OCAR504832 OCAR_4073OCAR_4269OCAR_4270OCAR_4268OCAR_4271OCAR_4267
NOCE323261 NOC_2262NOC_2263NOC_2259NOC_2258NOC_2260NOC_2257NOC_2261
NMUL323848 NMUL_A2132NMUL_A0570NMUL_A0571NMUL_A0569NMUL_A0572NMUL_A2134
NMEN374833 NMCC_1849NMCC_0537NMCC_0536NMCC_0538NMCC_0535NMCC_1850
NMEN272831 NMC1882NMC0533NMC0532NMC0534NMC0531NMC1883
NMEN122587 NMA2189NMA0716NMA0794NMA0793NMA0795NMA0792NMA2190
NMEN122586 NMB_0296NMB_0591NMB_0590NMB_0592NMB_0589NMB_0295
NGON242231 NGO1699NGO0173NGO0172NGO0174NGO0171NGO1700
NEUT335283 NEUT_1709NEUT_1786NEUT_0444NEUT_0443NEUT_0445NEUT_0442NEUT_1710
NEUR228410 NE1459NE2332NE1672NE1673NE1671NE1674NE1460
MSUC221988 MS0518MS0517MS0441MS0442MS0440MS0443MS0519
MSP400668 MMWYL1_3772MMWYL1_3773MMWYL1_3769MMWYL1_3768MMWYL1_3770MMWYL1_3767MMWYL1_3771
MSP266779 MESO_3066MESO_3443MESO_3444MESO_3339MESO_3445MESO_3341
MPET420662 MPE_A3385MPE_A1105MPE_A1106MPE_A1104MPE_A1107MPE_A3220
MLOT266835 MLL3569MLL4288MLL4287MLR4381MLL4283MLR4379
MFLA265072 MFLA_0521MFLA_0510MFLA_2333MFLA_2332MFLA_2334MFLA_2331MFLA_0522
MCAP243233 MCA_1337MCA_0393MCA_0394MCA_0392MCA_0395MCA_1338
MAQU351348 MAQU_2312MAQU_2313MAQU_2279MAQU_2278MAQU_2280MAQU_2277MAQU_2311
LSAK314315 LSA1470LSA0717LSA0718LSA0715LSA0719LSA0714
LPNE400673 LPC_3047LPC_2945LPC_2946LPC_2944LPC_2947LPC_2943
LPNE297246 LPP2811LPP0465LPP0464LPP0466LPP0463LPP0467
LPNE297245 LPL2680LPL0441LPL0440LPL0442LPL0439LPL0443
LPNE272624 LPG2763LPG0397LPG0396LPG0399LPG0395LPG0400
LINN272626 LIN2881LIN1907LIN1906LIN1911LIN1901LIN1915
LGAS324831 LGAS_1366LGAS_0787LGAS_0788LGAS_0786LGAS_0789LGAS_0785
LCHO395495 LCHO_3833LCHO_0682LCHO_0683LCHO_0681LCHO_0684LCHO_0376
LCAS321967 LSEI_1765LSEI_1599LSEI_1598LSEI_1601LSEI_1597LSEI_1602
KPNE272620 GKPORF_B2267GKPORF_B2268GKPORF_B2264GKPORF_B2263GKPORF_B2265GKPORF_B2262GKPORF_B2266
JSP375286 MMA_2984MMA_0592MMA_0593MMA_0591MMA_0594MMA_2985
ILOI283942 IL1728IL1729IL1725IL1724IL1726IL1723IL1727
HSOM228400 HSM_0219HSM_0218HSM_0166HSM_0167HSM_0165HSM_0168HSM_0220
HSOM205914 HS_1428HS_1429HS_0294HS_0295HS_0293HS_0296HS_1427
HINF71421 HI_0107HI_0203HI_0202HI_0204HI_0201HI_0106
HINF374930 CGSHIEE_02740CGSHIEE_02230CGSHIEE_02235CGSHIEE_02225CGSHIEE_02240CGSHIEE_02745
HINF281310 NTHI0196NTHI0300NTHI0299NTHI0301NTHI0298NTHI0194
HHAL349124 HHAL_0445HHAL_0469HHAL_0528HHAL_0530HHAL_0527HHAL_0444
HDUC233412 HD_0770HD_1948HD_1947HD_1949HD_1946HD_1999
HCHE349521 HCH_01769HCH_01768HCH_01773HCH_01774HCH_01772HCH_01775HCH_01771
HAUR316274 HAUR_0470HAUR_4619HAUR_2982HAUR_4621HAUR_0226HAUR_4622
HARS204773 HEAR2775HEAR0624HEAR0625HEAR0623HEAR0626HEAR2777
GURA351605 GURA_1784GURA_3761GURA_3760GURA_3763GURA_3758GURA_3764
GSUL243231 GSU_2282GSU_0645GSU_0646GSU_0643GSU_0648GSU_0642
GMET269799 GMET_2368GMET_2869GMET_2868GMET_2871GMET_2866GMET_2872
FTUL458234 FTA_1001FTA_1840FTA_1839FTA_1841FTA_1838FTA_1311
FTUL418136 FTW_1052FTW_0241FTW_0242FTW_0240FTW_0243FTW_0863
FTUL401614 FTN_1006FTN_1561FTN_1560FTN_1562FTN_1559FTN_0843
FTUL393115 FTF0676FTF0151FTF0152FTF0150FTF0153FTF0964C
FTUL393011 FTH_0929FTH_1676FTH_1675FTH_1677FTH_1674FTH_1216
FTUL351581 FTL_0951FTL_1737FTL_1736FTL_1738FTL_1735FTL_1239
FRANT FT.0677RIMMTRMDRPSPRPLSFFH
FPHI484022 FPHI_1581FPHI_1053FPHI_1054FPHI_1052FPHI_1055FPHI_1770
FNOD381764 FNOD_1002FNOD_0648FNOD_0649FNOD_0646FNOD_0651FNOD_0645
ESP42895 ENT638_3092ENT638_3093ENT638_3089ENT638_3088ENT638_3090ENT638_3087ENT638_3091
EFER585054 EFER_0461EFER_0460EFER_0464EFER_0465EFER_0463EFER_0466EFER_0462
EFAE226185 EF_0700EF_1900EF_1899EF_1694EF_1898EF_1700
ECOO157 Z3905YFJDYFJATRMDRPSPRPLSFFH
ECOL83334 ECS3474ECS3475ECS3471ECS3470ECS3472ECS3469ECS3473
ECOL585397 ECED1_3050ECED1_3051ECED1_3047ECED1_3046ECED1_3048ECED1_3045ECED1_3049
ECOL585057 ECIAI39_2815ECIAI39_2816ECIAI39_2812ECIAI39_2811ECIAI39_2813ECIAI39_2810ECIAI39_2814
ECOL585056 ECUMN_2936ECUMN_2937ECUMN_2933ECUMN_2932ECUMN_2934ECUMN_2931ECUMN_2935
ECOL585055 EC55989_2900EC55989_2901EC55989_2897EC55989_2896EC55989_2898EC55989_2895EC55989_2899
ECOL585035 ECS88_2797ECS88_2798ECS88_2794ECS88_2793ECS88_2795ECS88_2792ECS88_2796
ECOL585034 ECIAI1_2733ECIAI1_2734ECIAI1_2729ECIAI1_2728ECIAI1_2730ECIAI1_2727ECIAI1_2732
ECOL481805 ECOLC_1072ECOLC_1071ECOLC_1075ECOLC_1076ECOLC_1074ECOLC_1077ECOLC_1073
ECOL469008 ECBD_1075ECBD_1074ECBD_1078ECBD_1079ECBD_1077ECBD_1080ECBD_1076
ECOL439855 ECSMS35_2763ECSMS35_2764ECSMS35_2760ECSMS35_2759ECSMS35_2761ECSMS35_2758ECSMS35_2762
ECOL413997 ECB_02500ECB_02501ECB_02497ECB_02496ECB_02498ECB_02495ECB_02499
ECOL409438 ECSE_2895ECSE_2896ECSE_2892ECSE_2891ECSE_2893ECSE_2890ECSE_2894
ECOL405955 APECO1_3922APECO1_3921APECO1_3925APECO1_39262APECO1_3924APECO1_3927APECO1_3923
ECOL364106 UTI89_C2944UTI89_C2945UTI89_C2941UTI89_C2940UTI89_C2942UTI89_C2939UTI89_C2943
ECOL362663 ECP_2612ECP_2613ECP_2609ECP_2608ECP_2610ECP_2607ECP_2611
ECOL331111 ECE24377A_2895ECE24377A_2896ECE24377A_2892ECE24377A_2891ECE24377A_2893ECE24377A_2890ECE24377A_2894
ECOL316407 ECK2608:JW2592:B2611ECK2609:JW5415:B4461ECK2605:JW5413:B2608ECK2604:JW2588:B2607ECK2606:JW2590:B2609ECK2603:JW2587:B2606ECK2607:JW5414:B2610
ECOL199310 C3132C3133C3129C3128C3130C3127C3131
ECAR218491 ECA3361ECA3358ECA3357ECA3359ECA3356ECA3360
DNOD246195 DNO_0426DNO_1008DNO_1009DNO_1007DNO_1010DNO_0428
DHAF138119 DSY0610DSY2595DSY2594DSY2598DSY2592DSY2599
DARO159087 DARO_0640DARO_3065DARO_3064DARO_3066DARO_3063DARO_0642
CVIO243365 CV_3832CV_4153CV_3674CV_3673CV_3675CV_3672CV_3833
CVES412965 COSY_0558COSY_0331COSY_0884COSY_0261COSY_0885COSY_0797COSY_0557
CSAL290398 CSAL_3018CSAL_3019CSAL_3015CSAL_3014CSAL_3016CSAL_3013CSAL_3017
CRUT413404 RMAG_0605RMAG_0350RMAG_0989RMAG_0275RMAG_0990RMAG_0872RMAG_0604
CPSY167879 CPS_4075CPS_4076CPS_4068CPS_4067CPS_4069CPS_4066CPS_4073
CPER195103 CPF_0036CPF_1964CPF_1963CPF_1966CPF_1962CPF_1967
CPER195102 CPE0030CPE1710CPE1709CPE1712CPE1708CPE1713
CKLU431943 CKL_2840CKL_1404CKL_1405CKL_1402CKL_1406CKL_1401
CJAP155077 CJA_1684CJA_1636CJA_1434CJA_1435CJA_1433CJA_1436CJA_1685
CDIF272563 CD1044CD1255CD1256CD1253CD1257CD1252
CDES477974 DAUD_2004DAUD_0659DAUD_0660DAUD_0656DAUD_0661DAUD_0655
CBUR434922 COXBU7E912_1623COXBU7E912_1622COXBU7E912_1630COXBU7E912_1631COXBU7E912_1629COXBU7E912_1632COXBU7E912_1624
CBUR360115 COXBURSA331_A0560COXBURSA331_A0561COXBURSA331_A0551COXBURSA331_A0550COXBURSA331_A0552COXBURSA331_A0549COXBURSA331_A0559
CBUR227377 CBU_0451CBU_0452CBU_0444CBU_0443CBU_0445CBU_0442CBU_0450
BWEI315730 BCERKBAB4_3095BCERKBAB4_3665BCERKBAB4_3664BCERKBAB4_3667BCERKBAB4_3663BCERKBAB4_3668
BTHU412694 BALH_3041BALH_3473BALH_3472BALH_3475BALH_3471BALH_3476
BTHU281309 BT9727_3156BT9727_3583BT9727_3582BT9727_3585BT9727_3581BT9727_3586
BTHA271848 BTH_I1137BTH_I1662BTH_I1663BTH_I1661BTH_I1664BTH_I1149
BSUB BSU09590BSU16020BSU16030BSU15990BSU16040BSU15980
BSP376 BRADO0610BRADO0377BRADO0376BRADO0378BRADO0375BRADO0379
BSP36773 BCEP18194_A3664BCEP18194_A4184BCEP18194_A4185BCEP18194_A4183BCEP18194_A4186BCEP18194_A3675
BPUM315750 BPUM_0906BPUM_1500BPUM_1501BPUM_1497BPUM_1502BPUM_1496
BPSE320373 BURPS668_3505BURPS668_2858BURPS668_2857BURPS668_2859BURPS668_2856BURPS668_3479
BPSE320372 BURPS1710B_A3808BURPS1710B_A3217BURPS1710B_A3216BURPS1710B_A3218BURPS1710B_A3215BURPS1710B_A3793
BPSE272560 BPSL3007BPSL2491BPSL2490BPSL2492BPSL2489BPSL2995
BPET94624 BPET3657BPET2005BPET2006BPET2004BPET1914BPET4326
BPER257313 BP1038BP1840BP1841BP1839BP0975BP0079
BPAR257311 BPP1138BPP2866BPP2865BPP2867BPP1665BPP0501
BMAL320389 BMA10247_3252BMA10247_0229BMA10247_0230BMA10247_0228BMA10247_0231BMA10247_3268
BMAL320388 BMASAVP1_A0452BMASAVP1_A2544BMASAVP1_A2543BMASAVP1_A2545BMASAVP1_A2542BMASAVP1_A0436
BMAL243160 BMA_2530BMA_0402BMA_0401BMA_0403BMA_0400BMA_2514
BLIC279010 BL02882BL05160BL01291BL02323BL01290BL02322
BJAP224911 BLL0186BLR0483BLR0486BLR0482BLR0487BLR0481
BCER572264 BCA_3458BCA_3942BCA_3941BCA_3944BCA_3939BCA_3945
BCER405917 BCE_3392BCE_3884BCE_3883BCE_3886BCE_3882BCE_3887
BCER315749 BCER98_2138BCER98_2494BCER98_2493BCER98_2496BCER98_2492BCER98_2497
BCER288681 BCE33L3066BCE33L3601BCE33L3600BCE33L3603BCE33L3599BCE33L3604
BCER226900 BC_3355BC_3840BC_3839BC_3842BC_3838BC_3843
BCEN331272 BCEN2424_0579BCEN2424_1070BCEN2424_1071BCEN2424_1069BCEN2424_1072BCEN2424_0590
BCEN331271 BCEN_0097BCEN_0591BCEN_0592BCEN_0590BCEN_0593BCEN_0108
BBRO257310 BB1354BB3187BB3186BB3188BB3443BB0506
BANT592021 BAA_3456BAA_4004BAA_4003BAA_4006BAA_4001BAA_4007
BANT568206 BAMEG_1205BAMEG_0651BAMEG_0652BAMEG_0649BAMEG_0654BAMEG_0648
BANT261594 GBAA3422GBAA3980GBAA3979GBAA3982GBAA3978GBAA3983
BANT260799 BAS3172BAS3693BAS3692BAS3695BAS3691BAS3696
BAMY326423 RBAM_009820RBAM_015850RBAM_015860RBAM_015820RBAM_015870RBAM_015810
BAMB398577 BAMMC406_0507BAMMC406_0950BAMMC406_0951BAMMC406_0949BAMMC406_0952BAMMC406_0518
BAMB339670 BAMB_0482BAMB_0946BAMB_0947BAMB_0945BAMB_0948BAMB_0493
ASP76114 EBA1335EBA7167EBA7168EBB247EBA7169EBA4351
ASP62977 ACIAD0838ACIAD3312ACIAD3311ACIAD3313ACIAD3310ACIAD0839
ASP62928 AZO3233AZO0781AZO2899AZO2900AZO2898AZO2901AZO3232
ASP232721 AJS_3627AJS_0848AJS_3354AJS_3353AJS_3355AJS_3352AJS_3626
ASAL382245 ASA_0664ASA_0663ASA_0667ASA_0668ASA_0666ASA_0669ASA_0665
APLE434271 APJL_1406APJL_1407APJL_1823APJL_1824APJL_1822APJL_1825APJL_1778
APLE416269 APL_1388APL_1389APL_1787APL_1788APL_1786APL_1789APL_1742
AORE350688 CLOS_0671CLOS_1466CLOS_1467CLOS_1464CLOS_1468CLOS_1463
AHYD196024 AHA_0664AHA_0663AHA_0667AHA_0668AHA_0666AHA_0669AHA_0665
AFER243159 AFE_2441AFE_0254AFE_0255AFE_0253AFE_0256AFE_0252
AEHR187272 MLG_1939MLG_1166MLG_0885MLG_0886MLG_0884MLG_0887MLG_1938
ABOR393595 ABO_0796ABO_0795ABO_0799ABO_0800ABO_0798ABO_0801ABO_0797
ABAU360910 BAV0838BAV2350BAV2349BAV2352BAV1373BAV0452


Organism features enriched in list (features available for 231 out of the 245 orgs in the list)
Feature    Pvalue       Num occurrences in list  Total num occurrences  
Arrangment:Pairs 0.003932956112
Disease:Bubonic_plague 0.003719166
Disease:Dysentery 0.003719166
Disease:Gastroenteritis 0.00559051013
Disease:Tularemia 0.009511855
Endospores:No 4.108e-1442211
GC_Content_Range4:0-40 3.537e-1246213
GC_Content_Range4:40-60 7.234e-8119224
GC_Content_Range7:0-30 9.240e-8347
GC_Content_Range7:30-40 6.301e-643166
GC_Content_Range7:50-60 1.590e-664107
GC_Content_Range7:60-70 0.002857766134
Genome_Size_Range5:0-2 5.458e-1720155
Genome_Size_Range5:2-4 0.000104058197
Genome_Size_Range5:4-6 2.311e-21125184
Genome_Size_Range5:6-10 0.00197052847
Genome_Size_Range9:0-1 0.0000154127
Genome_Size_Range9:1-2 7.746e-1219128
Genome_Size_Range9:2-3 0.000365732120
Genome_Size_Range9:4-5 3.601e-65896
Genome_Size_Range9:5-6 3.757e-146788
Genome_Size_Range9:6-8 0.00003932738
Gram_Stain:Gram_Neg 3.537e-19183333
Gram_Stain:Gram_Pos 8.787e-931150
Habitat:Host-associated 0.008480470206
Habitat:Multiple 0.000129990178
Habitat:Specialized 0.00314061253
Motility:No 5.950e-931151
Motility:Yes 1.292e-10143267
Optimal_temp.:- 0.0024193117257
Optimal_temp.:25-30 0.00039871519
Optimal_temp.:30-37 0.0011823118
Optimal_temp.:35-37 4.813e-61313
Optimal_temp.:37 0.007749132106
Oxygen_Req:Anaerobic 4.516e-719102
Oxygen_Req:Facultative 3.649e-8110201
Pathogenic_in:Animal 0.00034043966
Pathogenic_in:No 0.000645872226
Pathogenic_in:Plant 0.00634521115
Shape:Coccus 5.816e-61582
Shape:Rod 3.237e-19188347
Shape:Sphere 0.0045723219
Shape:Spiral 0.0000405334
Temp._range:Hyperthermophilic 0.0008359223
Temp._range:Mesophilic 0.0001101204473
Temp._range:Psychrophilic 0.003107489
Temp._range:Thermophilic 0.0001471435



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ORGANISMS CONTAINING AT MOST 1 GENES FROM THE GROUP:

Total number of orgs: 104
Effective number of orgs (counting one per cluster within 468 clusters): 93

Organism list
Homologs in each organism in the list
Features enriched in organism list


Follow (ncbi) link, when present, to find the set of organism features for each organism
Org ID  Org Name  # genes in group found in org  
UURE95667 Ureaplasma urealyticum serovar 130
UURE95664 Ureaplasma urealyticum serovar 101
UPAR505682 ncbi Ureaplasma parvum serovar 3 str. ATCC 278150
UMET351160 ncbi uncultured methanogenic archaeon RC-I1
TWHI218496 ncbi Tropheryma whipplei TW08/270
TWHI203267 ncbi Tropheryma whipplei Twist0
TVOL273116 ncbi Thermoplasma volcanium GSS10
TPEN368408 ncbi Thermofilum pendens Hrk 50
TKOD69014 ncbi Thermococcus kodakarensis KOD10
TACI273075 ncbi Thermoplasma acidophilum DSM 17280
STOK273063 ncbi Sulfolobus tokodaii 70
SSP387093 ncbi Sulfurovum sp. NBC37-11
SSOL273057 ncbi Sulfolobus solfataricus P20
SMAR399550 ncbi Staphylothermus marinus F10
SARE391037 ncbi Salinispora arenicola CNS-2051
SACI330779 ncbi Sulfolobus acidocaldarius DSM 6390
RSAL288705 ncbi Renibacterium salmoninarum ATCC 332091
PTOR263820 ncbi Picrophilus torridus DSM 97900
PISL384616 ncbi Pyrobaculum islandicum DSM 41840
PHOR70601 ncbi Pyrococcus horikoshii OT30
PFUR186497 ncbi Pyrococcus furiosus DSM 36380
PARS340102 ncbi Pyrobaculum arsenaticum DSM 135140
PAER178306 ncbi Pyrobaculum aerophilum IM20
PABY272844 ncbi Pyrococcus abyssi GE50
NPHA348780 ncbi Natronomonas pharaonis DSM 21601
MTHE349307 ncbi Methanosaeta thermophila PT0
MTHE187420 ncbi Methanothermobacter thermautotrophicus Delta H0
MSYN262723 ncbi Mycoplasma synoviae 530
MSTA339860 ncbi Methanosphaera stadtmanae DSM 30910
MSED399549 ncbi Metallosphaera sedula DSM 53480
MPUL272635 ncbi Mycoplasma pulmonis UAB CTIP0
MPNE272634 ncbi Mycoplasma pneumoniae M1290
MPEN272633 ncbi Mycoplasma penetrans HF-20
MMYC272632 ncbi Mycoplasma mycoides mycoides SC str. PG11
MMOB267748 ncbi Mycoplasma mobile 163K1
MMAZ192952 ncbi Methanosarcina mazei Go10
MMAR444158 ncbi Methanococcus maripaludis C60
MMAR426368 ncbi Methanococcus maripaludis C70
MMAR402880 ncbi Methanococcus maripaludis C50
MMAR368407 ncbi Methanoculleus marisnigri JR11
MMAR267377 ncbi Methanococcus maripaludis S20
MLEP272631 ncbi Mycobacterium leprae TN1
MLAB410358 ncbi Methanocorpusculum labreanum Z1
MKAN190192 ncbi Methanopyrus kandleri AV190
MJAN243232 ncbi Methanocaldococcus jannaschii DSM 26610
MHYO295358 ncbi Mycoplasma hyopneumoniae 2320
MHYO262722 ncbi Mycoplasma hyopneumoniae 74480
MHYO262719 ncbi Mycoplasma hyopneumoniae J0
MHUN323259 ncbi Methanospirillum hungatei JF-11
MGEN243273 ncbi Mycoplasma genitalium G370
MFLO265311 ncbi Mesoplasma florum L10
MCAP340047 ncbi Mycoplasma capricolum capricolum ATCC 273431
MBUR259564 ncbi Methanococcoides burtonii DSM 62420
MBAR269797 ncbi Methanosarcina barkeri Fusaro1
MAVI243243 ncbi Mycobacterium avium 1041
MART243272 ncbi Mycoplasma arthritidis 158L3-11
MAEO419665 ncbi Methanococcus aeolicus Nankai-30
MACE188937 ncbi Methanosarcina acetivorans C2A0
LXYL281090 ncbi Leifsonia xyli xyli CTCB071
LINT267671 ncbi Leptospira interrogans serovar Copenhageni str. Fiocruz L1-1300
LINT189518 ncbi Leptospira interrogans serovar Lai str. 566010
LBOR355277 ncbi Leptospira borgpetersenii serovar Hardjo-bovis JB1970
LBOR355276 ncbi Leptospira borgpetersenii serovar Hardjo-bovis L5500
LBIF456481 ncbi Leptospira biflexa serovar Patoc strain Patoc 1 (Paris)1
LBIF355278 ncbi Leptospira biflexa serovar Patoc strain Patoc 1 (Ames)1
IHOS453591 ncbi Ignicoccus hospitalis KIN4/I0
HWAL362976 ncbi Haloquadratum walsbyi DSM 167901
HSP64091 ncbi Halobacterium sp. NRC-10
HSAL478009 ncbi Halobacterium salinarum R10
HPYL85963 ncbi Helicobacter pylori J991
HPYL357544 ncbi Helicobacter pylori HPAG11
HPY ncbi Helicobacter pylori 266951
HMUK485914 ncbi Halomicrobium mukohataei DSM 122861
HMAR272569 ncbi Haloarcula marismortui ATCC 430491
HHEP235279 ncbi Helicobacter hepaticus ATCC 514491
HBUT415426 ncbi Hyperthermus butylicus DSM 54560
HACI382638 ncbi Helicobacter acinonychis Sheeba1
GFOR411154 ncbi Gramella forsetii KT08031
CSUL444179 ncbi Candidatus Sulcia muelleri GWSS0
CMET456442 ncbi Candidatus Methanoregula boonei 6A81
CMAQ397948 ncbi Caldivirga maquilingensis IC-1670
CKOR374847 ncbi Candidatus Korarchaeum cryptofilum OPF80
CJEJ407148 ncbi Campylobacter jejuni jejuni 811161
CJEJ354242 ncbi Campylobacter jejuni jejuni 81-1761
CJEI306537 ncbi Corynebacterium jeikeium K4111
CHUT269798 ncbi Cytophaga hutchinsonii ATCC 334061
CHOM360107 ncbi Campylobacter hominis ATCC BAA-3811
CGLU196627 ncbi Corynebacterium glutamicum ATCC 130321
CFET360106 ncbi Campylobacter fetus fetus 82-401
CFEL264202 ncbi Chlamydophila felis Fe/C-561
CEFF196164 ncbi Corynebacterium efficiens YS-3141
CDIP257309 ncbi Corynebacterium diphtheriae NCTC 131291
CCUR360105 ncbi Campylobacter curvus 525.921
CCON360104 ncbi Campylobacter concisus 138261
CCHL340177 ncbi Chlorobium chlorochromatii CaD30
CCAV227941 ncbi Chlamydophila caviae GPIC1
CABO218497 ncbi Chlamydophila abortus S26/31
BXEN266265 ncbi Burkholderia xenovorans LB4000
BLON206672 ncbi Bifidobacterium longum NCC27050
AURANTIMONAS Aurantimonas manganoxydans SI85-9A10
ASP1667 Arthrobacter sp.1
APER272557 ncbi Aeropyrum pernix K10
AFUL224325 ncbi Archaeoglobus fulgidus DSM 43040
ABUT367737 ncbi Arcobacter butzleri RM40181


Names of the homologs of the genes in the group in each of these orgs
  G7355   EG12442   EG11153   EG11023   EG10915   EG10880   EG10300   
UURE95667
UURE95664 UUR10_0078
UPAR505682
UMET351160 RCIX1155
TWHI218496
TWHI203267
TVOL273116
TPEN368408
TKOD69014
TACI273075
STOK273063
SSP387093 SUN_0368
SSOL273057
SMAR399550
SARE391037 SARE_1190
SACI330779
RSAL288705 RSAL33209_1920
PTOR263820
PISL384616
PHOR70601
PFUR186497
PARS340102
PAER178306
PABY272844
NPHA348780 NP1414A
MTHE349307
MTHE187420
MSYN262723
MSTA339860
MSED399549
MPUL272635
MPNE272634
MPEN272633
MMYC272632 MSC_0425
MMOB267748 MMOB4280
MMAZ192952
MMAR444158
MMAR426368
MMAR402880
MMAR368407 MEMAR_1314
MMAR267377
MLEP272631 ML1616
MLAB410358 MLAB_1278
MKAN190192
MJAN243232
MHYO295358
MHYO262722
MHYO262719
MHUN323259 MHUN_3011
MGEN243273
MFLO265311
MCAP340047 MCAP_0547
MBUR259564
MBAR269797 MBAR_A2480
MAVI243243 MAV_3762
MART243272 MART0211
MAEO419665
MACE188937
LXYL281090 LXX14820
LINT267671
LINT189518
LBOR355277
LBOR355276
LBIF456481 LEPBI_I1662
LBIF355278 LBF_1612
IHOS453591
HWAL362976 HQ3705A
HSP64091
HSAL478009
HPYL85963 JHP1078
HPYL357544 HPAG1_1090
HPY HP1151
HMUK485914 HMUK_0885
HMAR272569 RRNAC2600
HHEP235279 HH_0939
HBUT415426
HACI382638 HAC_1318
GFOR411154 GFO_2797
CSUL444179
CMET456442 MBOO_1891
CMAQ397948
CKOR374847
CJEJ407148 C8J_0677
CJEJ354242 CJJ81176_0733
CJEI306537 JK1184
CHUT269798 CHU_2754
CHOM360107 CHAB381_0557
CGLU196627 CG2235
CFET360106 CFF8240_1038
CFEL264202 CF0355
CEFF196164 CE1932
CDIP257309 DIP1527
CCUR360105 CCV52592_0676
CCON360104 CCC13826_1433
CCHL340177
CCAV227941 CCA_00656
CABO218497 CAB627
BXEN266265
BLON206672
AURANTIMONAS
ASP1667 ARTH_2483
APER272557
AFUL224325
ABUT367737 ABU_1973


Organism features enriched in list (features available for 100 out of the 104 orgs in the list)
Feature    Pvalue       Num occurrences in list  Total num occurrences  
Arrangment:Aggregates 0.008367359
Arrangment:Chains 0.0065640892
Arrangment:Pairs 0.003319710112
Arrangment:Singles 6.375e-873286
Disease:Leptospirosis 0.000823144
Endospores:No 1.948e-1774211
Endospores:Yes 0.0003395153
GC_Content_Range4:0-40 0.001741349213
GC_Content_Range4:60-100 0.001795014145
GC_Content_Range7:0-30 0.00465211547
GC_Content_Range7:60-70 0.006012014134
Genome_Size_Range5:0-2 7.572e-1154155
Genome_Size_Range5:4-6 5.978e-99184
Genome_Size_Range5:6-10 0.0010316147
Genome_Size_Range9:0-1 0.00002001427
Genome_Size_Range9:1-2 3.301e-640128
Genome_Size_Range9:4-5 0.0005061696
Genome_Size_Range9:5-6 0.0000237388
Gram_Stain:Gram_Neg 0.000339442333
Gram_Stain:Gram_Pos 0.000049711150
Habitat:Multiple 0.000056815178
Habitat:Specialized 0.00009642053
Motility:No 0.001238638151
Optimal_temp.:- 0.000057227257
Optimal_temp.:100 0.004921533
Optimal_temp.:35-40 0.004921533
Optimal_temp.:37 0.002849328106
Optimal_temp.:85 0.000823144
Oxygen_Req:Anaerobic 4.933e-634102
Oxygen_Req:Facultative 0.004645624201
Pathogenic_in:Human 0.001357224213
Salinity:Extreme_halophilic 0.002000557
Shape:Irregular_coccus 1.278e-101517
Shape:Rod 9.039e-1229347
Shape:Sphere 2.630e-91519
Shape:Spiral 4.353e-61734
Temp._range:Hyperthermophilic 1.119e-91723
Temp._range:Mesophilic 0.000525369473



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ORGANISMS ENRICHED FOR GROUP:

Total number of orgs: 4
Effective number of orgs (counting one per cluster within 468 clusters): 3

Organism list
Homologs in each organism in the list
Features enriched in organism list


Follow (ncbi) link, when present, to find the set of organism features for each organism
Org ID  Org Name    Pvalue       # genes in tgt genome found in org  # genes in group found in org  
CVES412965 ncbi Candidatus Vesicomyosocius okutanii HA 0.00093227327
CRUT413404 ncbi Candidatus Ruthia magnifica Cm (Calyptogena magnifica) 0.00115877557
CBUR360115 ncbi Coxiella burnetii RSA 331 0.00816859977
CBUR227377 ncbi Coxiella burnetii RSA 493 0.009008710117


Names of the homologs of the genes in the group in each of these orgs
  G7355   EG12442   EG11153   EG11023   EG10915   EG10880   EG10300   
CVES412965 COSY_0558COSY_0331COSY_0884COSY_0261COSY_0885COSY_0797COSY_0557
CRUT413404 RMAG_0605RMAG_0350RMAG_0989RMAG_0275RMAG_0990RMAG_0872RMAG_0604
CBUR360115 COXBURSA331_A0560COXBURSA331_A0561COXBURSA331_A0551COXBURSA331_A0550COXBURSA331_A0552COXBURSA331_A0549COXBURSA331_A0559
CBUR227377 CBU_0451CBU_0452CBU_0444CBU_0443CBU_0445CBU_0442CBU_0450


Organism features enriched in list (features available for 4 out of the 4 orgs in the list)
Feature    Pvalue       Num occurrences in list  Total num occurrences  
Disease:Q_fever 0.000035422
Shape:Coccobacillus 0.0018853211



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ORGANISMS DEPLETED FOR GROUP:




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PHYLOGENETIC PROFILE SIMILARITY WITH KNOWN PATHWAYS:

Pathways or complexes with absolute value of Pearson coefficient with respect to candidate larger than 0.4 are listed below
The candidate is assumed to exist in orgs listed in section List of organisms containing most genes from the group


Pathway or complex  # Orgs containing it  # of those orgs also containing candidate  Pearson Coeff  
PWY0-1241 (ADP-L-glycero-β-D-manno-heptose biosynthesis)2181730.6013
GLYCOCAT-PWY (glycogen degradation I)2461800.5597
PWY-5386 (methylglyoxal degradation I)3052000.5262
PWY-5111 (CMP-KDO biosynthesis II (from D-arabinose 5-phosphate))3001970.5197
PWY-5918 (heme biosynthesis I)2721830.5038
COBALSYN-PWY (adenosylcobalamin salvage from cobinamide I)1951470.4983
HEME-BIOSYNTHESIS-II (heme biosynthesis from uroporphyrinogen-III I)2861860.4849
PWY4FS-7 (phosphatidylglycerol biosynthesis I (plastidic))2911870.4779
PHOSLIPSYN-PWY (phospholipid biosynthesis I)2901860.4740
LIPA-CORESYN-PWY (Lipid A-core biosynthesis)1761340.4729
PWY0-1319 (CDP-diacylglycerol biosynthesis II)2961880.4711
PWY-1269 (CMP-KDO biosynthesis I)3251990.4683
AST-PWY (arginine degradation II (AST pathway))1201030.4650
PWY-4041 (γ-glutamyl cycle)2791800.4644
ECASYN-PWY (enterobacterial common antigen biosynthesis)1911400.4624
KDO-LIPASYN-PWY (KDO2-lipid A biosynthesis I)2251560.4619
GLUTATHIONESYN-PWY (glutathione biosynthesis)3392030.4598
PWY-5857 (ubiquinone-10 biosynthesis (prokaryotic))1831330.4403
PWY-5755 (4-hydroxybenzoate biosynthesis II (bacteria and fungi))81760.4313
TYRFUMCAT-PWY (tyrosine degradation I)1841320.4296
3-HYDROXYPHENYLACETATE-DEGRADATION-PWY (4-hydroxyphenylacetate degradation)1491140.4268
NAGLIPASYN-PWY (lipid IVA biosynthesis)3482000.4179
PWY-5855 (ubiquinone-7 biosynthesis (prokaryotic))1911330.4126
PWY-5913 (TCA cycle variation IV)3011810.4118
PWY-6196 (serine racemization)102860.4075
LIPASYN-PWY (phospholipases)2121420.4066
GLUCONSUPER-PWY (D-gluconate degradation)2291490.4017



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PAIRWISE GENOME CONTEXT SCORE MATRIX:

  EG12442   EG11153   EG11023   EG10915   EG10880   EG10300   
G73550.9996340.9994450.9994070.9994980.9993790.99981
EG124420.999080.9990230.9990790.9990060.999449
EG111530.9999940.9999920.9999680.999904
EG110230.9999720.9999810.999854
EG109150.9999390.999945
EG108800.99981
EG10300



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PAIRWISE BLAST SCORES:

  G7355   EG12442   EG11153   EG11023   EG10915   EG10880   EG10300   
G73550.0f0------
EG12442-0.0f0-----
EG11153--0.0f0----
EG11023---0.0f0---
EG10915----0.0f0--
EG10880-----0.0f0-
EG10300------0.0f0



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PATHWAYS OR PROTEIN COMPLEX MATCHES IN TARGET ORG:

For each case, all genes involved in the pathway or complex are listed. For each gene we list: a tag indicating whether the gene is part of the candidate list or not, the average and the minimum scores of the gene to the candidate list, the gene name, and its product names.

- CPLX0-3964 (ribosome) (degree of match pw to cand: 0.034, degree of match cand to pw: 0.286, average score: 0.685)
  Genes in pathway or complex:
                NIL    NIL EG30077 (rrlA) RRLA-RRNA (23S ribosomal RNA (rrlA))
                NIL    NIL EG30070 (rrfA) RRFA-RRNA (5S ribosomal RNA (rrfA))
             0.3052 0.0578 EG10864 (rplA) EG10864-MONOMER (50S ribosomal subunit protein L1)
             0.2208 0.0038 EG10865 (rplB) EG10865-MONOMER (50S ribosomal subunit protein L2)
             0.2660 0.0439 EG10866 (rplC) EG10866-MONOMER (50S ribosomal subunit protein L3)
             0.2895 0.0705 EG10867 (rplD) EG10867-MONOMER (50S ribosomal subunit protein L4)
             0.2355 0.0027 EG10868 (rplE) EG10868-MONOMER (50S ribosomal subunit protein L5)
             0.2132 0.0026 EG10869 (rplF) EG10869-MONOMER (50S ribosomal subunit protein L6)
             0.2694 0.0038 EG10873 (rplL) MONOMER0-2811 (50S ribosomal subunit protein L7)
             0.2664 0.0501 EG10871 (rplJ) EG10871-MONOMER (50S ribosomal subunit protein L10)
             0.3515 0.1197 EG10870 (rplI) EG10870-MONOMER (50S ribosomal subunit protein L9)
             0.2667 0.0035 EG10872 (rplK) EG10872-MONOMER (50S ribosomal subunit protein L11)
             0.1475 0.0033 EG10874 (rplM) EG10874-MONOMER (50S ribosomal subunit protein L13)
             0.2549 0.0784 EG10875 (rplN) EG10875-MONOMER (50S ribosomal subunit protein L14)
             0.3679 0.1047 EG10876 (rplO) EG10876-MONOMER (50S ribosomal subunit protein L15)
             0.2845 0.0916 EG10877 (rplP) EG10877-MONOMER (50S ribosomal subunit protein L16)
             0.3822 0.1810 EG10878 (rplQ) EG10878-MONOMER (50S ribosomal subunit protein L17)
             0.2344 0.0515 EG10879 (rplR) EG10879-MONOMER (50S ribosomal subunit protein L18)
   *in cand* 0.9997 0.9990 EG10880 (rplS) EG10880-MONOMER (50S ribosomal subunit protein L19)
             0.7145 0.0907 EG10881 (rplT) EG10881-MONOMER (50S ribosomal subunit protein L20)
             0.9854 0.9772 EG50001 (rplU) EG50001-MONOMER (50S ribosomal subunit protein L21)
             0.2955 0.0037 EG10882 (rplV) EG10882-MONOMER (50S ribosomal subunit protein L22)
             0.3833 0.0985 EG10883 (rplW) EG10883-MONOMER (50S ribosomal subunit protein L23)
             0.2325 0.0399 EG10884 (rplX) EG10884-MONOMER (50S ribosomal subunit protein L24)
             0.3124 0.0937 EG10885 (rplY) EG10885-MONOMER (50S ribosomal subunit protein L25)
             0.9868 0.9823 EG50002 (rpmA) EG50002-MONOMER (50S ribosomal subunit protein L27)
             0.9619 0.9296 EG10886 (rpmB) EG10886-MONOMER (50S ribosomal subunit protein L28)
             0.2486 0.0024 EG10887 (rpmC) EG10887-MONOMER (50S ribosomal subunit protein L29)
             0.2360 0.0026 EG10888 (rpmD) EG10888-MONOMER (50S ribosomal subunit protein L30)
             0.6744 0.2154 EG10889 (rpmE) EG10889-MONOMER (50S ribosomal subunit protein L31)
             0.9037 0.6637 EG10890 (rpmF) EG10890-MONOMER (50S ribosomal subunit protein L32)
             0.3639 0.0519 EG10891 (rpmG) EG10891-MONOMER (50S ribosomal subunit protein L33)
             0.2725 0.1023 EG10892 (rpmH) EG10892-MONOMER (50S ribosomal subunit protein L34)
             0.1298 0.0684 EG11231 (rpmI) EG11231-MONOMER (50S ribosomal subunit protein L35)
             0.4032 0.1453 EG11232 (rpmJ) EG11232-MONOMER (50S ribosomal subunit protein L36)
                NIL    NIL EG30084 (rrsA) RRSA-RRNA (16S ribosomal RNA (rrsA))
             0.8037 0.2944 EG10900 (rpsA) EG10900-MONOMER (30S ribosomal subunit protein S1)
             0.8437 0.2226 EG10901 (rpsB) EG10901-MONOMER (30S ribosomal subunit protein S2)
             0.1795 0.0021 EG10902 (rpsC) EG10902-MONOMER (30S ribosomal subunit protein S3)
             0.4171 0.2231 EG10903 (rpsD) EG10903-MONOMER (30S ribosomal subunit protein S4)
             0.2706 0.0695 EG10904 (rpsE) EG10904-MONOMER (30S ribosomal subunit protein S5)
             0.3553 0.1020 EG10905 (rpsF) EG10905-MONOMER (30S ribosomal subunit protein S6)
             0.2813 0.0020 EG10906 (rpsG) EG10906-MONOMER (30S ribosomal subunit protein S7)
             0.2648 0.0475 EG10907 (rpsH) EG10907-MONOMER (30S ribosomal subunit protein S8)
             0.1404 0.0022 EG10908 (rpsI) EG10908-MONOMER (30S ribosomal subunit protein S9)
             0.1798 0.0020 EG10909 (rpsJ) EG10909-MONOMER (30S ribosomal subunit protein S10)
             0.2281 0.0029 EG10910 (rpsK) EG10910-MONOMER (30S ribosomal subunit protein S11)
             0.4587 0.0875 EG10911 (rpsL) EG10911-MONOMER (30S ribosomal subunit protein S12)
             0.3083 0.0581 EG10912 (rpsM) EG10912-MONOMER (30S ribosomal subunit protein S13)
             0.5528 0.2735 EG10913 (rpsN) EG10913-MONOMER (30S ribosomal subunit protein S14)
             0.9587 0.7752 EG10914 (rpsO) EG10914-MONOMER (30S ribosomal subunit protein S15)
   *in cand* 0.9998 0.9991 EG10915 (rpsP) EG10915-MONOMER (30S ribosomal subunit protein S16)
             0.3020 0.0033 EG10916 (rpsQ) EG10916-MONOMER (30S ribosomal subunit protein S17)
             0.3833 0.1244 EG10917 (rpsR) EG10917-MONOMER (30S ribosomal subunit protein S18)
             0.3268 0.0602 EG10918 (rpsS) EG10918-MONOMER (30S ribosomal subunit protein S19)
             0.9551 0.8438 EG10919 (rpsT) EG10919-MONOMER (30S ribosomal subunit protein S20)
             0.9334 0.8128 EG10920 (rpsU) EG10920-MONOMER (30S ribosomal subunit protein S21)
             0.3555 0.3536 EG11508 (sra) EG11508-MONOMER (30S ribosomal subunit protein S22)
  Genes in candidate but not in this pathway or complex:
   *in cand* 0.9998 0.9994 EG10300 (ffh) EG10300-MONOMER (protein component of the signal recognition particle (SRP))
   *in cand* 0.9997 0.9990 EG11023 (trmD) EG11023-MONOMER (TrmD)
   *in cand* 0.9998 0.9991 EG11153 (rimM) EG11153-MONOMER (ribosome maturation protein)
   *in cand* 0.9993 0.9990 EG12442 (yfjD) G7356-MONOMER (predicted inner membrane protein)
   *in cand* 0.9996 0.9994 G7355 (ypjD) G7355-MONOMER (predicted inner membrane protein)



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GENOME CONTEXT INFORMATION:

Each row corresponds to a replicon in an organism, each column to a gene in the candidate. The second column indicates whether the organims was included in the list used to compute the genome context scores or not. Some organisms are not included because they are phylogenetically too similar to others already in the list.
The number in the matrix indicate the position of the homolog of the gene in the replicon. All numbers are relative to the smaller one, which is assigned a position of zero. Two columns with the same number indicate that the two genes matched the same gene in that organism.

Genome browser links for gene clusters

The links below opens a genome browser BioCyc page for each cluster of genes in the target genome. These pages shows the central gene of the cluster in the target genome and its best homolog in the reference genomes, for the genomes that contain homologs for at least 75% of the genes in the group. Only one genome per phylogenetic cluster of organisms is shown, to keep the list smaller.

EG10300 EG10880 EG10915 EG11023 EG11153 EG12442 G7355 (centered at EG10915)


ORG:REPLICON:CIRC?\GENE  IN REF LIST  G7355   EG12442   EG11153   EG11023   EG10915   EG10880   EG10300   
144/623434/623420/623410/623419/623415/623418/623
AAEO224324:0:Tyes-7590----
AAUR290340:2:Tyes-0-211---
AAVE397945:0:Tyes--10011002100010030
ABAC204669:0:Tyes--01-2162
ABAU360910:0:Tyes-3881906190519089240
ABOR393595:0:Tyes1045362
ABUT367737:0:Tyes----0--
ACAU438753:0:Tyes-03989-398839913987
ACEL351607:0:Tyes--10---
ACRY349163:8:Tyes----304
ADEH290397:0:Tyes-0115011491152--
AEHR187272:0:Tyes104327712031042
AFER243159:0:Tyes-215623140
AHYD196024:0:Tyes1045362
ALAI441768:0:Tyes-0-514---
AMAR234826:0:Tyes-184--0--
AMAR329726:9:Tyes-1530---2094
AMET293826:0:Tyes-0137313721375-1376
ANAE240017:0:Tyes----50-
AORE350688:0:Tyes-0784785782786781
APHA212042:0:Tyes-8581141-0--
APLE416269:0:Tyes01423424422425378
APLE434271:0:Tno01436437435438391
ASAL382245:5:Tyes1045362
ASP1667:3:Tyes----0--
ASP232721:2:Tyes2690024242423242524222689
ASP62928:0:Tyes2497021572158215621592496
ASP62977:0:Tyes0-22972296229822951
ASP76114:2:Tyes-033883389338733901763
AVAR240292:3:Tyes-16800724-14613273
AYEL322098:4:Tyes-272-0---
BABO262698:1:Tno-19186-0802
BAFZ390236:2:Fyes-0--673677-
BAMB339670:3:Tno-047447547347612
BAMB398577:3:Tno-044644744544812
BAMY326423:0:Tyes-0603604600605599
BANT260799:0:Tno-0514513516512517
BANT261594:2:Tno-0510509512508513
BANT568206:2:Tyes-55434150
BANT592021:2:Tno-0545544547543548
BAPH198804:0:Tyes--23140
BAPH372461:0:Tyes--1203-
BBAC264462:0:Tyes---0--4
BBAC360095:0:Tyes---181-0
BBRO257310:0:Tyes-85126962695269729590
BBUR224326:21:Fno-0--624--
BCAN483179:1:Tno-20997-0892
BCEN331271:2:Tno-050350450250512
BCEN331272:3:Tyes-049049148949211
BCER226900:1:Tyes-0467466469465470
BCER288681:0:Tno-0530529532528533
BCER315749:1:Tyes-0330329332328333
BCER405917:1:Tyes-0474473476472477
BCER572264:1:Tno-0476475478474479
BCIC186490:0:Tyes--21304
BCLA66692:0:Tyes--32607
BFRA272559:1:Tyes-0----1703
BFRA295405:0:Tno-0----1841
BGAR290434:2:Fyes-0--659663-
BHAL272558:0:Tyes--21506
BHEN283166:0:Tyes---118020
BHER314723:0:Fyes-0--639--
BJAP224911:0:Fyes-0299302298303297
BLIC279010:0:Tyes-0765766762767761
BMAL243160:1:Tno-188621301872
BMAL320388:1:Tno-1520602059206120580
BMAL320389:1:Tyes-296012032975
BMEL224914:1:Tno-0106-193114191
BMEL359391:1:Tno-18279-0722
BOVI236:1:Tyes-16976-0682
BPAR257311:0:Tno-61122492248225010990
BPER257313:0:Tyes-8521573157415727960
BPET94624:0:Tyes-177191929002443
BPSE272560:1:Tyes-5252130513
BPSE320372:1:Tno-5832130569
BPSE320373:1:Tno-6312130606
BPUM315750:0:Tyes-0594595591596590
BQUI283165:0:Tyes---116018
BSP107806:2:Tyes--23140
BSP36773:2:Tyes-052953052853112
BSP376:0:Tyes-21921304
BSUB:0:Tyes-0687688684690683
BSUI204722:1:Tyes-19585-0782
BSUI470137:0:Tno----0-2
BSUI470137:1:Tno-1198--0-
BTHA271848:1:Tno-051551651451711
BTHE226186:0:Tyes-0----1483
BTHU281309:1:Tno-0424423426422427
BTHU412694:1:Tno-0407406409405410
BTRI382640:1:Tyes---119021
BTUR314724:0:Fyes-0--637--
BVIE269482:7:Tyes-0435436-43712
BWEI315730:4:Tyes-0563562565561566
CABO218497:0:Tyes---0---
CACE272562:1:Tyes-0333334331335-
CAULO:0:Tyes-28623507-350803509
CBEI290402:0:Tyes-2746-304-
CBLO203907:0:Tyes--1203-
CBLO291272:0:Tno--23140
CBOT36826:1:Tno-468103-4
CBOT441770:0:Tyes-550103-4
CBOT441771:0:Tno-500103-4
CBOT441772:1:Tno-449103-4
CBOT498213:1:Tno-559103-4
CBOT508765:1:Tyes-21782304-
CBOT515621:2:Tyes-486103-4
CBOT536232:0:Tno-547103-4
CBUR227377:1:Tyes8921307
CBUR360115:1:Tno1112213010
CBUR434922:2:Tno10897102
CCAV227941:1:Tyes---0---
CCON360104:2:Tyes----0--
CCUR360105:0:Tyes----0--
CDES477974:0:Tyes-134245160
CDIF272563:1:Tyes-0224225222226221
CDIP257309:0:Tyes-----0-
CEFF196164:0:Fyes-----0-
CFEL264202:1:Tyes---0---
CFET360106:0:Tyes----0--
CGLU196627:0:Tyes-----0-
CHOM360107:1:Tyes----0--
CHUT269798:0:Tyes------0
CHYD246194:0:Tyes--32-06
CJAP155077:0:Tyes2421951203243
CJEI306537:0:Tyes-----0-
CJEJ192222:0:Tyes--2-0--
CJEJ195099:0:Tno--2-0--
CJEJ354242:2:Tyes----0--
CJEJ360109:0:Tyes--0-2--
CJEJ407148:0:Tno----0--
CKLU431943:1:Tyes-143234150
CMET456442:0:Tyes-0-----
CMIC31964:2:Tyes-242-0---
CMIC443906:2:Tyes-0-643---
CMUR243161:1:Tyes-230-0---
CNOV386415:0:Tyes-0693692695691-
CPEL335992:0:Tyes---01--
CPER195102:1:Tyes-017121711171417101715
CPER195103:0:Tno-018971896189918951900
CPER289380:3:Tyes-0161416131616-1617
CPHY357809:0:Tyes-60710--4
CPNE115711:1:Tyes-0-291---
CPNE115713:0:Tno-279-0---
CPNE138677:0:Tno-285-0---
CPNE182082:0:Tno-297-0---
CPRO264201:0:Fyes-477-10--
CPSY167879:0:Tyes91021307
CRUT413404:0:Tyes310726620663554309
CSAL290398:0:Tyes5621304
CSP501479:7:Fyes--9127-0
CSP501479:8:Fyes-0-----
CSP78:2:Tyes-4994708-470704706
CTEP194439:0:Tyes----30-
CTET212717:0:Tyes--12-30
CTRA471472:0:Tyes-230-0---
CTRA471473:0:Tno-230-0---
CVES412965:0:Tyes285665990600513284
CVIO243365:0:Tyes1614972130162
DARO159087:0:Tyes-024452444244624432
DDES207559:0:Tyes-72421-05
DETH243164:0:Tyes-10462230---
DGEO319795:1:Tyes-01385--1638-
DHAF138119:0:Tyes-020152014201820122019
DNOD246195:0:Tyes-05615625605632
DOLE96561:0:Tyes-0258257260-261
DPSY177439:2:Tyes-0-200-202196
DRAD243230:1:Tyes-0-----
DRAD243230:3:Tyes--12301231-0-
DRED349161:0:Tyes--21506
DSHI398580:5:Tyes-12923-7012
DSP216389:0:Tyes-9412240---
DSP255470:0:Tno-9532190---
DVUL882:1:Tyes-1304-0--4
ECAN269484:0:Tyes-85--0--
ECAR218491:0:Tyes5-21304
ECHA205920:0:Tyes-671--0--
ECOL199310:0:Tno5621304
ECOL316407:0:Tno5621304
ECOL331111:6:Tno5621304
ECOL362663:0:Tno5621304
ECOL364106:1:Tno5621304
ECOL405955:2:Tyes6731405
ECOL409438:6:Tyes5621304
ECOL413997:0:Tno5621304
ECOL439855:4:Tno5621304
ECOL469008:0:Tno1045362
ECOL481805:0:Tno1045362
ECOL585034:0:Tno6721305
ECOL585035:0:Tno5621304
ECOL585055:0:Tno5621304
ECOL585056:2:Tno5621304
ECOL585057:0:Tno5621304
ECOL585397:0:Tno5621304
ECOL83334:0:Tno5621304
ECOLI:0:Tno5621304
ECOO157:0:Tno5621304
EFAE226185:3:Tyes-0113811379551136959
EFER585054:1:Tyes1045362
ELIT314225:0:Tyes--5-607
ERUM254945:0:Tyes-88--0--
ERUM302409:0:Tno-87--0--
ESP42895:1:Tyes5621304
FALN326424:0:Tyes-0821820---
FJOH376686:0:Tyes-176----0
FMAG334413:1:Tyes-0-135132-131
FNOD381764:0:Tyes-37734160
FNUC190304:0:Tyes-1203-0--1110
FPHI484022:1:Tyes-5501203742
FRANT:0:Tno-4871203760
FSP106370:0:Tyes-0592591---
FSP1855:0:Tyes--01---
FSUC59374:0:Tyes--102-6
FTUL351581:0:Tno-0697696698695255
FTUL393011:0:Tno-0617616618615240
FTUL393115:0:Tyes-4791203750
FTUL401614:0:Tyes-1637137127147110
FTUL418136:0:Tno-6931203545
FTUL458234:0:Tno-0625624626623226
GBET391165:0:Tyes-0-1568157015671495
GFOR411154:0:Tyes------0
GKAU235909:1:Tyes-0573574570-569
GMET269799:1:Tyes-0497496499494500
GOXY290633:5:Tyes-419-1203
GSUL243231:0:Tyes-163334160
GTHE420246:1:Tyes-0507508504-503
GURA351605:0:Tyes-019701969197219671973
GVIO251221:0:Tyes-0731105--1877
HACI382638:1:Tyes----0--
HARS204773:0:Tyes2037-12032038
HAUR316274:2:Tyes-24644312776443304434
HCHE349521:0:Tyes1045362
HDUC233412:0:Tyes-010271026102810251073
HHAL349124:0:Tyes125-8384820
HHEP235279:0:Tyes----0--
HINF281310:0:Tyes-1989799960
HINF374930:0:Tyes-83120384
HINF71421:0:Tno-1908991880
HMAR272569:8:Tyes-0-----
HMOD498761:0:Tyes--34160
HMUK485914:1:Tyes-0-----
HNEP81032:0:Tyes-47--2-0
HPY:0:Tno----0--
HPYL357544:1:Tyes----0--
HPYL85963:0:Tno----0--
HSOM205914:1:Tyes1139114012031138
HSOM228400:0:Tno5352120354
HWAL362976:1:Tyes-0-----
ILOI283942:0:Tyes5621304
JSP290400:1:Tyes-1756--7015
JSP375286:0:Tyes2421-12032422
KPNE272620:2:Tyes5621304
KRAD266940:2:Fyes--2-406
LACI272621:0:Tyes-0--609606-
LBIF355278:2:Tyes--0----
LBIF456481:2:Tno--0----
LBRE387344:2:Tyes--2140-
LCAS321967:1:Tyes-16821405
LCHO395495:0:Tyes-34813083093073100
LDEL321956:0:Tyes-0660659661654-
LDEL390333:0:Tyes-0589588590585-
LGAS324831:0:Tyes-55223140
LHEL405566:0:Tyes--2130-
LINN272626:1:Tno-10076510014
LINT363253:3:Tyes-383----0
LJOH257314:0:Tyes--21304
LLAC272622:5:Tyes-994-6636680-
LLAC272623:0:Tyes-940-6906950-
LMES203120:1:Tyes--8508498560932
LMON169963:0:Tno-98165-014
LMON265669:0:Tyes-90565-013
LPLA220668:0:Tyes---4150
LPNE272624:0:Tno-236121405
LPNE297245:1:Fno-224321304
LPNE297246:1:Fyes-235521304
LPNE400673:0:Tno-10223140
LREU557436:0:Tyes--3250-
LSAK314315:0:Tyes-75734150
LSPH444177:1:Tyes--34150
LWEL386043:0:Tyes-87732-011
LXYL281090:0:Tyes-----0-
MABS561007:1:Tyes--3--0-
MAER449447:0:Tyes---0-919-
MAQU351348:2:Tyes3334213032
MART243272:0:Tyes---0---
MAVI243243:0:Tyes--0----
MBAR269797:1:Tyes-0-----
MBOV233413:0:Tno--0---9
MBOV410289:0:Tno--0---9
MCAP243233:0:Tyes878-1203879
MCAP340047:0:Tyes----0--
MEXT419610:0:Tyes--37240950
MFLA265072:0:Tyes110182018191821181812
MGIL350054:3:Tyes-8103--0-
MHUN323259:0:Tyes-0-----
MLAB410358:0:Tyes-0-----
MLEP272631:0:Tyes--0----
MLOT266835:2:Tyes-0550549620546618
MMAG342108:0:Tyes-0140-139142138
MMAR368407:0:Tyes-0-----
MMAR394221:0:Tyes-0--610613608
MMOB267748:0:Tyes-----0-
MMYC272632:0:Tyes----0--
MPET420662:1:Tyes-227512032110
MSME246196:0:Tyes--0--3-
MSP164756:1:Tno--0--3-
MSP164757:0:Tno--0--3-
MSP189918:2:Tyes--0--3-
MSP266779:3:Tyes-0380381275382277
MSP400668:0:Tyes5621304
MSP409:2:Tyes-2266-11002850286
MSUC221988:0:Tyes8483120385
MTBCDC:0:Tno--0---9
MTBRV:0:Tno--0---9
MTHE264732:0:Tyes--34150
MTUB336982:0:Tno--0---9
MTUB419947:0:Tyes--0---9
MVAN350058:0:Tyes-0753----
MXAN246197:0:Tyes-0216121622159--
NARO279238:0:Tyes-18012-140
NEUR228410:0:Tyes08882142152132161
NEUT335283:2:Tyes1253132521301254
NFAR247156:2:Tyes-02745--27372750
NGON242231:0:Tyes1393-21301394
NHAM323097:2:Tyes-02975-297429772973
NMEN122586:0:Tno1-2862852872840
NMEN122587:0:Tyes14100757476731411
NMEN272831:0:Tno1171-21301172
NMEN374833:0:Tno1297-21301298
NMUL323848:3:Tyes-154812031550
NOCE323261:1:Tyes5621304
NPHA348780:2:Tyes-0-----
NSEN222891:0:Tyes-268--0--
NSP103690:6:Tyes-025263604-50381651
NSP35761:1:Tyes-0-1219-12181229
NSP387092:0:Tyes--0-2--
NWIN323098:0:Tyes-02410-240924122408
OANT439375:5:Tyes-032-17935177
OCAR504832:0:Tyes-0196197195198194
OIHE221109:0:Tyes-191945160
OTSU357244:0:Fyes-587796-1050-
PACN267747:0:Tyes--5--0-
PAER208963:0:Tyes1045362
PAER208964:0:Tno5621304
PARC259536:0:Tyes1-3143133153120
PAST100379:0:Tyes-0-334---
PATL342610:0:Tyes9291120393
PCAR338963:0:Tyes-010912713
PCRY335284:1:Tyes1-3363353373340
PDIS435591:0:Tyes-616----0
PENT384676:0:Tyes5621304
PFLU205922:0:Tyes1045362
PFLU216595:1:Tyes5621304
PFLU220664:0:Tyes1045362
PGIN242619:0:Tyes-0----745
PHAL326442:1:Tyes1056473
PING357804:0:Tyes5621304
PINT246198:1:Tyes-261----0
PLUM243265:0:Fyes1045362
PLUT319225:0:Tyes-0--709--
PMAR146891:0:Tyes--1282--0952
PMAR167539:0:Tyes--1315892-0-
PMAR167540:0:Tyes-----0823
PMAR167542:0:Tyes--1282--0929
PMAR167546:0:Tyes--1305--0974
PMAR167555:0:Tyes---1176-01182
PMAR59920:0:Tno---0-986-
PMAR74546:0:Tyes--1249--0920
PMAR74547:0:Tyes--1631--9620
PMAR93060:0:Tyes--1344--0967
PMEN399739:0:Tyes5621304
PMOB403833:0:Tyes-149534--0
PMUL272843:1:Tyes12113114-1150
PNAP365044:8:Tyes2959010291030102810312958
PPEN278197:0:Tyes---3140
PPRO298386:2:Tyes5621304
PPUT160488:0:Tno1045362
PPUT351746:0:Tyes5621304
PPUT76869:0:Tno1045362
PRUM264731:0:Tyes-0----281
PSP117:0:Tyes-0-45994600--
PSP296591:2:Tyes-30725725735715740
PSP312153:0:Tyes15033233333133414
PSP56811:2:Tyes394-1203395
PSTU379731:0:Tyes1045362
PSYR205918:0:Tyes1045362
PSYR223283:2:Tyes1045362
PTHE370438:0:Tyes--21506
RAKA293614:0:Fyes-792--1040-0
RALB246199:0:Tyes-1218--0-3
RBEL336407:0:Tyes-0--12111048974
RBEL391896:0:Fno-0--1395161237
RCAN293613:0:Fyes-737--921-0
RCAS383372:0:Tyes-157633103331220334
RCON272944:0:Tno-889--1176-0
RDEN375451:4:Tyes-16700-2-6
RETL347834:5:Tyes-0134-133136131
REUT264198:3:Tyes2454020452044204620432455
REUT381666:2:Tyes264003663673653682641
RFEL315456:2:Tyes-110--131601029
RFER338969:1:Tyes1941229612031940
RLEG216596:6:Tyes-0194195193196191
RMAS416276:1:Tyes-637--797-0
RMET266264:2:Tyes262902993002983012630
RPAL258594:0:Tyes-26621304
RPAL316055:0:Tyes-0182183181-180
RPAL316056:0:Tyes-31623140
RPAL316057:0:Tyes-0222221223220224
RPAL316058:0:Tyes-19021304
RPOM246200:1:Tyes-01588-1586-1579
RPRO272947:0:Tyes-522--690-0
RRIC392021:0:Fno-928--1204069
RRIC452659:0:Tyes-957--1233071
RRUB269796:1:Tyes-258223140
RSAL288705:0:Tyes-0-----
RSOL267608:1:Tyes1917193212031918
RSP101510:3:Fyes--0--5-
RSP357808:0:Tyes-188832378114790
RSPH272943:4:Tyes-01254-1255-1260
RSPH349101:2:Tno-01238-1239-1244
RSPH349102:5:Tyes-13406-5-0
RTYP257363:0:Tno-531--702-0
RXYL266117:0:Tyes--2-0--
SACI56780:0:Tyes--32-06
SAGA205921:0:Tno-7186746736770-
SAGA208435:0:Tno-8327887877910-
SAGA211110:0:Tyes-8618158148200-
SALA317655:1:Tyes-0571-572564573
SARE391037:0:Tyes------0
SAUR158878:1:Tno-0322323-324320
SAUR158879:1:Tno-0317318-319315
SAUR196620:0:Tno-0323324-325321
SAUR273036:0:Tno-0310311-312308
SAUR282458:0:Tno-0328329-330326
SAUR282459:0:Tno-0388389-390386
SAUR359786:1:Tno-0381382-383379
SAUR359787:1:Tno-0384385-386382
SAUR367830:3:Tno-0304305-306302
SAUR418127:0:Tyes-0318319-320316
SAUR426430:0:Tno-0361362-363359
SAUR93061:0:Fno-0341342-343339
SAUR93062:1:Tno-0325326-327323
SAVE227882:1:Fyes--2--08
SBAL399599:3:Tyes1045362
SBAL402882:1:Tno1045362
SBOY300268:1:Tyes5621304
SCO:2:Fyes--7--90
SDEG203122:0:Tyes1045362
SDEN318161:0:Tyes5621304
SDYS300267:1:Tyes5621304
SELO269084:0:Tyes-0341367-63-
SENT209261:0:Tno5621304
SENT220341:0:Tno5621304
SENT295319:0:Tno5621304
SENT321314:2:Tno5621304
SENT454169:2:Tno5621304
SEPI176279:1:Tyes-0289290-291287
SEPI176280:0:Tno-0304305-306302
SERY405948:0:Tyes-0-255-254-
SFLE198214:0:Tyes5621304
SFLE373384:0:Tno1045362
SFUM335543:0:Tyes-022952296229322982292
SGLO343509:3:Tyes1045362
SGOR29390:0:Tyes-5231851841922510
SHAE279808:0:Tyes-52521-04
SHAL458817:0:Tyes1045362
SHIGELLA:0:Tno5621304
SLAC55218:1:Fyes-12820-3-7
SLOI323850:0:Tyes1045362
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