CANDIDATE ID: 327

CANDIDATE ID: 327

NUMBER OF GENES: 7
AVERAGE SCORE:    9.9913548e-1 (range=[0.0,1.0])
AVERAGE MINIMUM BLAST P-VAL:   6.5714286e-15

Gene List
List of organisms containing most genes from the group
    Phylogenetic tree highlighting these organisms (opens new page)
List of organisms containing very few or no genes from the group
List of organisms enriched for group
List of organisms depleted for group
Phylogenetic profile similarity with known pathways
Pairwise genome context scores
Pairwise Blast scores
Pathway or protein complex matches in target organism
Genome context matrix
    Genes and their orthologs in genome browser BioCyc pages



GENE LIST:

- G6902 (ydhY) (b1674)
   Products of gene:
     - G6902-MONOMER (predicted 4Fe-4S ferredoxin-type protein)

- G6899 (ydhX) (b1671)
   Products of gene:
     - G6899-MONOMER (predicted 4Fe-4S ferredoxin-type protein)

- G6847 (ynfG) (b1589)
   Products of gene:
     - G6847-MONOMER (oxidoreductase, predicted Fe-S subunit)
     - CPLX0-1601 (putative selenate reductase)
       Reactions:
        selenate + a reduced electron acceptor  ->  selenite + an oxidized electron acceptor + H2O

- EG11946 (nrfC) (b4072)
   Products of gene:
     - NRFC-MONOMER (formate-dependent nitrite reductase, 4Fe-4S subunit)
     - NRFMULTI-CPLX (nitrite reductase complex)
       Reactions:
        ammonia + 6 an oxidized cytochrome c552 + 2 H2O  ->  nitrite + 6 a reduced cytochrome c552 + 7 H+

- EG11857 (fdoH) (b3893)
   Products of gene:
     - FDOH-MONOMER (formate dehydrogenase-O, β subunit)
     - FORMATEDEHYDROGO-CPLX (formate dehydrogenase-O)
       Reactions:
        formate[periplasmic space] + a menaquinone + 2 H+  ->  CO2[periplasmic space] + a menaquinol + H+[periplasmic space]
         In pathways
         PWY0-1321 (formate to nitrate electron transfer)
         PWY0-1356 (formate to dimethyl sulfoxide electron transfer)
         PWY0-1355 (formate to trimethylamine N-oxide electron transfer)

- EG11228 (fdnH) (b1475)
   Products of gene:
     - FDNH-MONOMER (formate dehydrogenase N, β subunit)
     - ALPHA-SUBUNIT-CPLX (trimer complex of formate dehydrogenase-N α, β and γ subunits)
     - FORMATEDEHYDROGN-CPLX (formate dehydrogenase-N)
       Reactions:
        formate[periplasmic space] + a menaquinone + 2 H+  ->  CO2[periplasmic space] + a menaquinol + H+[periplasmic space]
         In pathways
         PWY0-1321 (formate to nitrate electron transfer)
         PWY0-1356 (formate to dimethyl sulfoxide electron transfer)
         PWY0-1355 (formate to trimethylamine N-oxide electron transfer)

- EG10233 (dmsB) (b0895)
   Products of gene:
     - DMSB-MONOMER (dimethyl sulfoxide reductase, chain B)
     - DIMESULFREDUCT-CPLX (dimethyl sulfoxide reductase)
       Reactions:
        dimethyl sulfoxide[periplasmic space] + a menaquinol  ->  dimethylsulfide[periplasmic space] + a menaquinone + H2O[periplasmic space]
         In pathways
         PWY0-1356 (formate to dimethyl sulfoxide electron transfer)
         PWY0-1348 (NADH to dimethyl sulfoxide electron transfer)



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ORGANISMS CONTAINING AT LEAST 6 GENES FROM THE GROUP:

Total number of orgs: 114
Effective number of orgs (counting one per cluster within 468 clusters): 74

Organism list
Homologs in each organism in the list
Features enriched in organism list


Follow (ncbi) link, when present, to find the set of organism features for each organism
Org ID  Org Name  # genes in group found in org  
YPES386656 ncbi Yersinia pestis Pestoides F6
YPES377628 ncbi Yersinia pestis Nepal5166
YPES360102 ncbi Yersinia pestis Antiqua6
YPES349746 ncbi Yersinia pestis Angola6
YPES214092 ncbi Yersinia pestis CO926
YPES187410 ncbi Yersinia pestis KIM 106
WSUC273121 ncbi Wolinella succinogenes DSM 17407
VVUL216895 ncbi Vibrio vulnificus CMCP66
VVUL196600 ncbi Vibrio vulnificus YJ0167
VPAR223926 ncbi Vibrio parahaemolyticus RIMD 22106337
VFIS312309 ncbi Vibrio fischeri ES1147
VEIS391735 ncbi Verminephrobacter eiseniae EF01-27
TROS309801 ncbi Thermomicrobium roseum DSM 51596
TPEN368408 ncbi Thermofilum pendens Hrk 57
TKOD69014 ncbi Thermococcus kodakarensis KOD17
TDEN292415 ncbi Thiobacillus denitrificans ATCC 252597
SWOL335541 ncbi Syntrophomonas wolfei wolfei Goettingen6
STYP99287 ncbi Salmonella enterica enterica serovar Typhimurium str. LT27
STHE292459 ncbi Symbiobacterium thermophilum IAM 148637
SSP94122 ncbi Shewanella sp. ANA-37
SSON300269 ncbi Shigella sonnei Ss0467
SSED425104 ncbi Shewanella sediminis HAW-EB37
SPRO399741 ncbi Serratia proteamaculans 5687
SPEA398579 ncbi Shewanella pealeana ATCC 7003457
SONE211586 ncbi Shewanella oneidensis MR-17
SLOI323850 ncbi Shewanella loihica PV-46
SHIGELLA ncbi Shigella flexneri 2a str. 2457T7
SHAL458817 ncbi Shewanella halifaxensis HAW-EB47
SFUM335543 ncbi Syntrophobacter fumaroxidans MPOB7
SFLE373384 ncbi Shigella flexneri 5 str. 84017
SFLE198214 ncbi Shigella flexneri 2a str. 3017
SENT454169 ncbi Salmonella enterica enterica serovar Heidelberg str. SL4767
SENT321314 ncbi Salmonella enterica enterica serovar Choleraesuis str. SC-B677
SENT295319 ncbi Salmonella enterica enterica serovar Paratyphi A str. ATCC 91507
SENT220341 ncbi Salmonella enterica enterica serovar Typhi str. CT187
SENT209261 ncbi Salmonella enterica enterica serovar Typhi str. Ty27
SDYS300267 ncbi Shigella dysenteriae Sd1977
SBOY300268 ncbi Shigella boydii Sb2277
SBAL402882 ncbi Shewanella baltica OS1857
SBAL399599 ncbi Shewanella baltica OS1957
SACI56780 ncbi Syntrophus aciditrophicus SB7
RXYL266117 ncbi Rubrobacter xylanophilus DSM 99416
PSTU379731 ncbi Pseudomonas stutzeri A15016
PMUL272843 ncbi Pasteurella multocida multocida Pm707
PISL384616 ncbi Pyrobaculum islandicum DSM 41846
PARS340102 ncbi Pyrobaculum arsenaticum DSM 135147
PAER178306 ncbi Pyrobaculum aerophilum IM27
PACN267747 ncbi Propionibacterium acnes KPA1712027
MTHE264732 ncbi Moorella thermoacetica ATCC 390737
MSP409 Methylobacterium sp.6
MPET420662 ncbi Methylibium petroleiphilum PM17
MMAG342108 ncbi Magnetospirillum magneticum AMB-17
KRAD266940 ncbi Kineococcus radiotolerans SRS302166
KPNE272620 ncbi Klebsiella pneumoniae pneumoniae MGH 785786
HINF71421 ncbi Haemophilus influenzae Rd KW206
HINF281310 ncbi Haemophilus influenzae 86-028NP6
HHAL349124 ncbi Halorhodospira halophila SL16
HBUT415426 ncbi Hyperthermus butylicus DSM 54566
HARS204773 ncbi Herminiimonas arsenicoxydans7
GURA351605 ncbi Geobacter uraniireducens Rf47
GSUL243231 ncbi Geobacter sulfurreducens PCA7
GMET269799 ncbi Geobacter metallireducens GS-157
ESP42895 Enterobacter sp.6
EFER585054 ncbi Escherichia fergusonii ATCC 354696
ECOO157 ncbi Escherichia coli O157:H7 EDL9337
ECOL83334 Escherichia coli O157:H77
ECOL585397 ncbi Escherichia coli ED1a7
ECOL585057 ncbi Escherichia coli IAI397
ECOL585056 ncbi Escherichia coli UMN0267
ECOL585055 ncbi Escherichia coli 559897
ECOL585035 ncbi Escherichia coli S887
ECOL585034 ncbi Escherichia coli IAI17
ECOL481805 ncbi Escherichia coli ATCC 87397
ECOL469008 ncbi Escherichia coli BL21(DE3)7
ECOL439855 ncbi Escherichia coli SMS-3-57
ECOL413997 ncbi Escherichia coli B str. REL6067
ECOL409438 ncbi Escherichia coli SE117
ECOL405955 ncbi Escherichia coli APEC O17
ECOL364106 ncbi Escherichia coli UTI897
ECOL362663 ncbi Escherichia coli 5367
ECOL331111 ncbi Escherichia coli E24377A7
ECOL316407 ncbi Escherichia coli K-12 substr. W31107
ECOL199310 ncbi Escherichia coli CFT0737
ECAR218491 ncbi Pectobacterium atrosepticum SCRI10437
DVUL882 ncbi Desulfovibrio vulgaris Hildenborough6
DSP255470 ncbi Dehalococcoides sp. CBDB17
DSP216389 ncbi Dehalococcoides sp. BAV17
DSHI398580 ncbi Dinoroseobacter shibae DFL 126
DHAF138119 ncbi Desulfitobacterium hafniense Y517
DETH243164 ncbi Dehalococcoides ethenogenes 1957
DDES207559 ncbi Desulfovibrio desulfuricans desulfuricans G207
DARO159087 ncbi Dechloromonas aromatica RCB7
CSP501479 Citreicella sp. SE456
CJEJ407148 ncbi Campylobacter jejuni jejuni 811166
CJEJ354242 ncbi Campylobacter jejuni jejuni 81-1766
CHYD246194 ncbi Carboxydothermus hydrogenoformans Z-29017
BXEN266265 ncbi Burkholderia xenovorans LB4006
BSP36773 Burkholderia sp.7
BPSE320373 ncbi Burkholderia pseudomallei 6687
BPSE320372 ncbi Burkholderia pseudomallei 1710b7
BPSE272560 ncbi Burkholderia pseudomallei K962437
BMAL320389 ncbi Burkholderia mallei NCTC 102477
BMAL320388 ncbi Burkholderia mallei SAVP17
BMAL243160 ncbi Burkholderia mallei ATCC 233447
ASP76114 ncbi Aromatoleum aromaticum EbN17
ASAL382245 ncbi Aeromonas salmonicida salmonicida A4496
APLE434271 ncbi Actinobacillus pleuropneumoniae serovar 3 str. JL036
APLE416269 ncbi Actinobacillus pleuropneumoniae L206
AHYD196024 Aeromonas hydrophila dhakensis7
AEHR187272 ncbi Alkalilimnicola ehrlichii MLHE-17
ADEH290397 ncbi Anaeromyxobacter dehalogenans 2CP-C7
ACRY349163 ncbi Acidiphilium cryptum JF-56
ABAC204669 ncbi Candidatus Koribacter versatilis Ellin3457
AAEO224324 ncbi Aquifex aeolicus VF56


Names of the homologs of the genes in the group in each of these orgs
  G6902   G6899   G6847   EG11946   EG11857   EG11228   EG10233   
YPES386656 YPDSF_0036YPDSF_3036YPDSF_3036YPDSF_0036YPDSF_0036YPDSF_3036
YPES377628 YPN_3704YPN_0769YPN_0769YPN_3704YPN_3704YPN_0769
YPES360102 YPA_3028YPA_2820YPA_2820YPA_3028YPA_3028YPA_2820
YPES349746 YPANGOLA_A3769YPANGOLA_A0921YPANGOLA_A0921YPANGOLA_A3769YPANGOLA_A3769YPANGOLA_A0921
YPES214092 YPO4057YPO3324YPO3324YPO4057YPO4057YPO3324
YPES187410 Y4077Y0865Y0865Y4077Y4077Y0865
WSUC273121 WS0936WS0117WS1431WS0117WS0936WS0936WS1431
VVUL216895 VV1_3033VV1_3033VV1_3033VV1_3033VV1_3033VV1_3033
VVUL196600 VV2222VV1252VV2222VV1252VV1252VV1252VV1252
VPAR223926 VP2011VP1927VP1448VP1927VP1927VP1927VP1448
VFIS312309 VFA0081VF1552VFA0081VF1552VFA0081VFA0081VFA0081
VEIS391735 VEIS_3995VEIS_3995VEIS_3995VEIS_3995VEIS_3995VEIS_3995VEIS_3995
TROS309801 TRD_A0629TRD_A0058TRD_A0629TRD_1973TRD_1973TRD_A0058
TPEN368408 TPEN_0189TPEN_1122TPEN_0189TPEN_1122TPEN_1409TPEN_1409TPEN_1409
TKOD69014 TK2075TK2075TK2075TK2075TK2075TK2075TK2075
TDEN292415 TBD_1739TBD_1739TBD_1739TBD_1739TBD_1739TBD_1739TBD_1739
SWOL335541 SWOL_1704SWOL_1824SWOL_1824SWOL_0798SWOL_0798SWOL_1824
STYP99287 STM2064STM4279STM0965STM4279STM4036STM1569STM0965
STHE292459 STH2600STH111STH2331STH111STH3100STH3100STH2331
SSP94122 SHEWANA3_0493SHEWANA3_3961SHEWANA3_0635SHEWANA3_3961SHEWANA3_2090SHEWANA3_0103SHEWANA3_0635
SSON300269 SSO_1482SSO_1485SSO_1575SSO_4253SSO_4062SSO_1649SSO_0896
SSED425104 SSED_0486SSED_3562SSED_0349SSED_3562SSED_2922SSED_2798SSED_0349
SPRO399741 SPRO_2425SPRO_1067SPRO_1688SPRO_1067SPRO_0085SPRO_0085SPRO_1688
SPEA398579 SPEA_0507SPEA_3966SPEA_3862SPEA_3966SPEA_0439SPEA_0439SPEA_3862
SONE211586 SO_0483SO_4061SO_4357SO_4061SO_0102SO_0102SO_4357
SLOI323850 SHEW_0607SHEW_3157SHEW_0241SHEW_3157SHEW_3157SHEW_0241
SHIGELLA S1834S1831S1742NRFCFDOHFDNHDMSB
SHAL458817 SHAL_0693SHAL_0302SHAL_0406SHAL_0302SHAL_0494SHAL_0494SHAL_0406
SFUM335543 SFUM_1079SFUM_3286SFUM_3286SFUM_0609SFUM_0037SFUM_0037SFUM_3286
SFLE373384 SFV_1696SFV_1693SFV_1604SFV_4139SFV_3602SFV_1746SFV_0886
SFLE198214 AAN43279.1AAN43276.1AAN43194.1AAN45555.1AAN45404.1AAN43322.1AAN42487.1
SENT454169 SEHA_C2287SEHA_C4622SEHA_C1667SEHA_C4622SEHA_C4362SEHA_C1746SEHA_C1667
SENT321314 SCH_2073SCH_4158SCH_0919SCH_4158SCH_3926SCH_1570SCH_0919
SENT295319 SPA0807SPA4096SPA1357SPA4096SPA3878SPA1299SPA1357
SENT220341 STY2270STY4477STY0963STY4477STY3841STY3841STY0963
SENT209261 T0810T4185T1969T4185T3584T3584T1969
SDYS300267 SDY_3706SDY_1899SDY_1567SDY_1899SDY_3850SDY_1605SDY_1567
SBOY300268 SBO_1458SBO_1461SBO_1582SBO_4103SBO_3907SBO_1582SBO_1582
SBAL402882 SHEW185_3107SHEW185_4152SHEW185_2548SHEW185_4152SHEW185_0101SHEW185_0101SHEW185_2548
SBAL399599 SBAL195_3250SBAL195_4284SBAL195_2227SBAL195_4284SBAL195_0106SBAL195_0106SBAL195_2227
SACI56780 SYN_00633SYN_00633SYN_00633SYN_00633SYN_00604SYN_00604SYN_00633
RXYL266117 RXYL_2725RXYL_1613RXYL_1613RXYL_2725RXYL_2725RXYL_1206
PSTU379731 PST_3695PST_3695PST_3695PST_0165PST_0165PST_0165
PMUL272843 PM0723PM0025PM1755PM0025PM0407PM0407PM1755
PISL384616 PISL_1986PISL_1995PISL_1986PISL_1995PISL_1995PISL_1995
PARS340102 PARS_0387PARS_0387PARS_0953PARS_0387PARS_0953PARS_0953PARS_0953
PAER178306 PAE1263PAE1263PAE1263PAE1263PAE2661PAE2661PAE1263
PACN267747 PPA0516PPA0516PPA0516PPA0516PPA0516PPA0516PPA0516
MTHE264732 MOTH_1907MOTH_1385MOTH_1385MOTH_1907MOTH_0451MOTH_0451MOTH_1385
MSP409 M446_5827M446_5827M446_5827M446_5827M446_5827M446_5827
MPET420662 MPE_A2582MPE_A0859MPE_A0859MPE_A0859MPE_A0859MPE_A0859MPE_A0859
MMAG342108 AMB2921AMB3289AMB1649AMB1242AMB1649AMB1649AMB1649
KRAD266940 KRAD_1603KRAD_1603KRAD_1603KRAD_1603KRAD_1603KRAD_1603
KPNE272620 GKPORF_B2382GKPORF_B5368GKPORF_B5368GKPORF_B3530GKPORF_B0955GKPORF_B5368
HINF71421 HI_1067HI_1046HI_1067HI_0007HI_0007HI_1046
HINF281310 NTHI1227NTHI1206NTHI1227NTHI0010NTHI0010NTHI1206
HHAL349124 HHAL_1165HHAL_1935HHAL_1165HHAL_1935HHAL_1935HHAL_1935
HBUT415426 HBUT_1052HBUT_1052HBUT_0372HBUT_1052HBUT_1052HBUT_1052
HARS204773 HEAR3343HEAR3343HEAR3343HEAR3343HEAR3343HEAR3343HEAR3343
GURA351605 GURA_2493GURA_0863GURA_3387GURA_0863GURA_3373GURA_3373GURA_3387
GSUL243231 GSU_0911GSU_0783GSU_0778GSU_0783GSU_0778GSU_0778GSU_0778
GMET269799 GMET_3519GMET_3519GMET_1060GMET_3519GMET_1060GMET_1060GMET_1060
ESP42895 ENT638_3186ENT638_1419ENT638_1419ENT638_4086ENT638_2053ENT638_1419
EFER585054 EFER_3571EFER_4182EFER_4182EFER_3884EFER_1491EFER_4182
ECOO157 Z2702Z2698Z2577NRFCFDOHFDNHDMSB
ECOL83334 ECS2381ECS2378ECS2295ECS5054ECS4819ECS2079ECS0980
ECOL585397 ECED1_1873ECED1_1869ECED1_1758ECED1_4800ECED1_4596ECED1_1626ECED1_0925
ECOL585057 ECIAI39_1384ECIAI39_4494ECIAI39_1469ECIAI39_4494ECIAI39_3106ECIAI39_1738ECIAI39_2253
ECOL585056 ECUMN_1963ECUMN_1960ECUMN_1874ECUMN_4608ECUMN_4423ECUMN_1729ECUMN_1090
ECOL585055 EC55989_1841EC55989_1838EC55989_1754EC55989_4567EC55989_4370EC55989_1607EC55989_0940
ECOL585035 ECS88_1722ECS88_1719ECS88_1634ECS88_4565ECS88_4341ECS88_1568ECS88_0926
ECOL585034 ECIAI1_1725ECIAI1_1722ECIAI1_1639ECIAI1_4306ECIAI1_4097ECIAI1_1479ECIAI1_0935
ECOL481805 ECOLC_1957ECOLC_1960ECOLC_2041ECOLC_3955ECOLC_4125ECOLC_2182ECOLC_2701
ECOL469008 ECBD_1971ECBD_1974ECBD_2057ECBD_3960ECBD_4132ECBD_2164ECBD_2700
ECOL439855 ECSMS35_1523ECSMS35_1526ECSMS35_1611ECSMS35_4534ECSMS35_4279ECSMS35_1699ECSMS35_2225
ECOL413997 ECB_01643ECB_01640ECB_01558ECB_03944ECB_03778ECB_01433ECB_00899
ECOL409438 ECSE_1796ECSE_1793ECSE_1710ECSE_4367ECSE_4179ECSE_1564ECSE_0953
ECOL405955 APECO1_753APECO1_750APECO1_672APECO1_2383APECO1_2572APECO1_2572APECO1_1194
ECOL364106 UTI89_C1866UTI89_C1863UTI89_C1776UTI89_C4662UTI89_C4480UTI89_C1691UTI89_C0968
ECOL362663 ECP_1621ECP_1618ECP_0909ECP_4305ECP_4105ECP_1476ECP_0909
ECOL331111 ECE24377A_1889ECE24377A_1886ECE24377A_1796ECE24377A_4628ECE24377A_4422ECE24377A_1657ECE24377A_0971
ECOL316407 ECK1670:JW1664:B1674ECK1667:JW5271:B1671ECK1584:JW1581:B1589ECK4065:JW4033:B4072ECK3886:JW3864:B3893ECK1469:JW1471:B1475ECK0886:JW0878:B0895
ECOL199310 C2068C2065C1979C5068C4843C1906C1032
ECAR218491 ECA1249ECA1877ECA1407ECA1877ECA1407ECA1407ECA1407
DVUL882 DVU_0172DVU_0172DVU_0172DVU_2481DVU_2481DVU_0535
DSP255470 CBDBA131CBDBA121CBDBA131CBDBA121CBDBA131CBDBA131CBDBA131
DSP216389 DEHABAV1_0256DEHABAV1_0265DEHABAV1_0256DEHABAV1_0265DEHABAV1_0256DEHABAV1_0256DEHABAV1_0256
DSHI398580 DSHI_1237DSHI_1237DSHI_1237DSHI_1237DSHI_1237DSHI_1237
DHAF138119 DSY0356DSY0549DSY0356DSY4904DSY3100DSY3100DSY0356
DETH243164 DET_0112DET_0103DET_0112DET_0103DET_0112DET_0112DET_0112
DDES207559 DDE_0476DDE_0681DDE_0681DDE_0681DDE_0718DDE_0718DDE_1075
DARO159087 DARO_1817DARO_2603DARO_2583DARO_2603DARO_1817DARO_1817DARO_2583
CSP501479 CSE45_3304CSE45_0187CSE45_3304CSE45_3304CSE45_3304CSE45_0187
CJEJ407148 C8J_1484C8J_1484C8J_1484C8J_1484C8J_1484C8J_1484
CJEJ354242 CJJ81176_1571CJJ81176_1571CJJ81176_1571CJJ81176_1571CJJ81176_1571CJJ81176_1571
CHYD246194 CHY_1713CHY_2573CHY_2573CHY_2573CHY_0794CHY_0794CHY_2573
BXEN266265 BXE_B1742BXE_B1742BXE_B1742BXE_B2552BXE_B2552BXE_B1742
BSP36773 BCEP18194_B2000BCEP18194_B2000BCEP18194_B2000BCEP18194_B2000BCEP18194_B2099BCEP18194_B2099BCEP18194_B2000
BPSE320373 BURPS668_A3222BURPS668_A3222BURPS668_A2395BURPS668_A3222BURPS668_A2395BURPS668_A2395BURPS668_A3222
BPSE320372 BURPS1710B_B1697BURPS1710B_B1697BURPS1710B_B0860BURPS1710B_B1697BURPS1710B_B0860BURPS1710B_B0860BURPS1710B_B1697
BPSE272560 BPSS2300BPSS2300BPSS1666BPSS2300BPSS1666BPSS1666BPSS2300
BMAL320389 BMA10247_A2339BMA10247_A2339BMA10247_A0572BMA10247_A2339BMA10247_A0572BMA10247_A0572BMA10247_A2339
BMAL320388 BMASAVP1_1072BMASAVP1_1072BMASAVP1_1693BMASAVP1_1072BMASAVP1_1693BMASAVP1_1693BMASAVP1_1072
BMAL243160 BMA_A2048BMA_A2048BMA_A1682BMA_A2048BMA_A1682BMA_A1682BMA_A2048
ASP76114 EBA5004EBA1012EBA1012EBA5630EBA3055EBA3055EBA5630
ASAL382245 ASA_2323ASA_2323ASA_2323ASA_1789ASA_1789ASA_2323
APLE434271 APJL_0102APJL_1706APJL_0102APJL_0906APJL_0906APJL_1706
APLE416269 APL_0102APL_1675APL_0102APL_0894APL_0894APL_1675
AHYD196024 AHA_3287AHA_2761AHA_3287AHA_2761AHA_2525AHA_2525AHA_3287
AEHR187272 MLG_1298MLG_0634MLG_1676MLG_0634MLG_1676MLG_1676MLG_1676
ADEH290397 ADEH_1423ADEH_3087ADEH_0823ADEH_3087ADEH_3755ADEH_3755ADEH_0823
ACRY349163 ACRY_0344ACRY_2645ACRY_0344ACRY_2645ACRY_2645ACRY_2645
ABAC204669 ACID345_0869ACID345_2944ACID345_2944ACID345_2944ACID345_0869ACID345_0869ACID345_2944
AAEO224324 AQ_1232AQ_1232AQ_1232AQ_1046AQ_1046AQ_1232


Organism features enriched in list (features available for 108 out of the 114 orgs in the list)
Feature    Pvalue       Num occurrences in list  Total num occurrences  
Arrangment:Chains 0.0063332992
Arrangment:Pairs 0.000642333112
Disease:Bubonic_plague 0.000036066
Disease:Dysentery 0.000036066
Disease:Gastroenteritis 0.0034160713
Disease:Glanders_and_pneumonia 0.006213633
Disease:Melioidosis 0.006213633
Endospores:Yes 0.0040716353
GC_Content_Range4:0-40 1.850e-175213
GC_Content_Range4:40-60 3.658e-1679224
GC_Content_Range7:30-40 8.230e-125166
GC_Content_Range7:50-60 2.405e-1450107
Genome_Size_Range5:0-2 3.176e-611155
Genome_Size_Range5:2-4 0.000740323197
Genome_Size_Range5:4-6 1.653e-1570184
Genome_Size_Range9:1-2 0.000288211128
Genome_Size_Range9:2-3 0.009381914120
Genome_Size_Range9:4-5 2.359e-63596
Genome_Size_Range9:5-6 1.896e-73588
Gram_Stain:Gram_Neg 1.556e-1090333
Gram_Stain:Gram_Pos 1.071e-78150
Motility:No 0.000022112151
Motility:Yes 2.098e-671267
Oxygen_Req:Aerobic 3.599e-812185
Oxygen_Req:Facultative 8.455e-1065201
Shape:Coccus 0.0000209382
Shape:Rod 5.790e-684347



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ORGANISMS CONTAINING AT MOST 1 GENES FROM THE GROUP:

Total number of orgs: 422
Effective number of orgs (counting one per cluster within 468 clusters): 322

Organism list
Homologs in each organism in the list
Features enriched in organism list


Follow (ncbi) link, when present, to find the set of organism features for each organism
Org ID  Org Name  # genes in group found in org  
ZMOB264203 ncbi Zymomonas mobilis mobilis ZM40
XORY360094 ncbi Xanthomonas oryzae pv. oryzae PXO99A0
XORY342109 ncbi Xanthomonas oryzae pv. oryzae MAFF 3110180
XORY291331 ncbi Xanthomonas oryzae pv. oryzae KACC103310
XFAS405440 ncbi Xylella fastidiosa M120
XFAS183190 ncbi Xylella fastidiosa Temecula10
XFAS160492 ncbi Xylella fastidiosa 9a5c0
XCAM487884 Xanthomonas campestris pv. paulliniae0
XCAM316273 ncbi Xanthomonas campestris pv. vesicatoria str. 85-100
XCAM314565 ncbi Xanthomonas campestris pv. campestris str. 80040
XCAM190485 ncbi Xanthomonas campestris pv. campestris str. ATCC 339130
XAXO190486 ncbi Xanthomonas axonopodis pv. citri str. 3060
WPIP955 Wolbachia pipientis0
WPIP80849 Wolbachia endosymbiont of Brugia malayi0
VCHO345073 ncbi Vibrio cholerae O3950
VCHO ncbi Vibrio cholerae O1 biovar El Tor str. N169610
UURE95667 Ureaplasma urealyticum serovar 130
UURE95664 Ureaplasma urealyticum serovar 100
UPAR505682 ncbi Ureaplasma parvum serovar 3 str. ATCC 278150
UMET351160 ncbi uncultured methanogenic archaeon RC-I0
TWHI218496 ncbi Tropheryma whipplei TW08/270
TWHI203267 ncbi Tropheryma whipplei Twist0
TVOL273116 ncbi Thermoplasma volcanium GSS10
TTUR377629 ncbi Teredinibacter turnerae T79010
TTHE300852 ncbi Thermus thermophilus HB80
TTEN273068 ncbi Thermoanaerobacter tengcongensis MB41
TSP28240 Thermotoga sp.1
TSP1755 Thermoanaerobacter sp.0
TPSE340099 ncbi Thermoanaerobacter pseudethanolicus ATCC 332230
TPET390874 ncbi Thermotoga petrophila RKU-11
TPAL243276 ncbi Treponema pallidum pallidum Nichols0
TMAR243274 ncbi Thermotoga maritima MSB81
TLET416591 ncbi Thermotoga lettingae TMO0
TFUS269800 ncbi Thermobifida fusca YX0
TERY203124 ncbi Trichodesmium erythraeum IMS1010
TELO197221 ncbi Thermosynechococcus elongatus BP-10
TDEN243275 ncbi Treponema denticola ATCC 354050
TCRU317025 ncbi Thiomicrospira crunogena XCL-20
TACI273075 ncbi Thermoplasma acidophilum DSM 17280
STRO369723 ncbi Salinispora tropica CNB-4401
STHE322159 ncbi Streptococcus thermophilus LMD-90
STHE299768 ncbi Streptococcus thermophilus CNRZ10660
STHE264199 ncbi Streptococcus thermophilus LMG 183110
SSUI391296 ncbi Streptococcus suis 98HAH330
SSUI391295 ncbi Streptococcus suis 05ZYH330
SSP84588 ncbi Synechococcus sp. WH 81020
SSP64471 ncbi Synechococcus sp. CC93110
SSP644076 Silicibacter sp. TrichCH4B0
SSP321332 ncbi Synechococcus sp. JA-2-3Ba(2-13)0
SSP321327 ncbi Synechococcus sp. JA-3-3Ab0
SSP292414 ncbi Ruegeria sp. TM10400
SSP1148 ncbi Synechocystis sp. PCC 68030
SSP1131 Synechococcus sp. CC96050
SSAP342451 ncbi Staphylococcus saprophyticus saprophyticus ATCC 153050
SRUB309807 ncbi Salinibacter ruber DSM 138550
SPYO370554 ncbi Streptococcus pyogenes MGAS107500
SPYO370553 ncbi Streptococcus pyogenes MGAS20960
SPYO370552 ncbi Streptococcus pyogenes MGAS102700
SPYO370551 ncbi Streptococcus pyogenes MGAS94290
SPYO319701 ncbi Streptococcus pyogenes MGAS61800
SPYO293653 ncbi Streptococcus pyogenes MGAS50050
SPYO286636 ncbi Streptococcus pyogenes MGAS103940
SPYO198466 ncbi Streptococcus pyogenes MGAS3150
SPYO193567 ncbi Streptococcus pyogenes SSI-10
SPYO186103 ncbi Streptococcus pyogenes MGAS82320
SPYO160490 ncbi Streptococcus pyogenes M1 GAS0
SPNE488221 ncbi Streptococcus pneumoniae 705850
SPNE487214 ncbi Streptococcus pneumoniae Hungary19A-60
SPNE487213 ncbi Streptococcus pneumoniae Taiwan19F-140
SPNE171101 ncbi Streptococcus pneumoniae R60
SPNE170187 ncbi Streptococcus pneumoniae G540
SPNE1313 Streptococcus pneumoniae0
SMUT210007 ncbi Streptococcus mutans UA1590
SMED366394 ncbi Sinorhizobium medicae WSM4190
SHAE279808 ncbi Staphylococcus haemolyticus JCSC14350
SGOR29390 Streptococcus gordonii Challis0
SGLO343509 ncbi Sodalis glossinidius morsitans0
SEPI176280 ncbi Staphylococcus epidermidis ATCC 122280
SEPI176279 ncbi Staphylococcus epidermidis RP62A0
SELO269084 ncbi Synechococcus elongatus PCC 63010
SDEN318161 ncbi Shewanella denitrificans OS2170
SCO ncbi Streptomyces coelicolor A3(2)0
SAVE227882 ncbi Streptomyces avermitilis MA-46800
SAUR93062 ncbi Staphylococcus aureus aureus COL0
SAUR93061 ncbi Staphylococcus aureus aureus NCTC 83250
SAUR426430 ncbi Staphylococcus aureus aureus Newman0
SAUR418127 ncbi Staphylococcus aureus aureus Mu30
SAUR367830 Staphylococcus aureus aureus USA3000
SAUR359787 ncbi Staphylococcus aureus aureus JH10
SAUR359786 ncbi Staphylococcus aureus aureus JH90
SAUR282459 ncbi Staphylococcus aureus aureus MSSA4760
SAUR282458 ncbi Staphylococcus aureus aureus MRSA2520
SAUR273036 ncbi Staphylococcus aureus RF1220
SAUR196620 ncbi Staphylococcus aureus aureus MW20
SAUR158879 ncbi Staphylococcus aureus aureus N3150
SAUR158878 ncbi Staphylococcus aureus aureus Mu500
SARE391037 ncbi Salinispora arenicola CNS-2051
SALA317655 ncbi Sphingopyxis alaskensis RB22560
SAGA211110 ncbi Streptococcus agalactiae NEM3160
SAGA208435 ncbi Streptococcus agalactiae 2603V/R0
SAGA205921 ncbi Streptococcus agalactiae A9090
SACI330779 ncbi Sulfolobus acidocaldarius DSM 6390
RTYP257363 ncbi Rickettsia typhi Wilmington0
RSPH349101 ncbi Rhodobacter sphaeroides ATCC 170290
RSPH272943 ncbi Rhodobacter sphaeroides 2.4.10
RSOL267608 ncbi Ralstonia solanacearum GMI10000
RSAL288705 ncbi Renibacterium salmoninarum ATCC 332090
RRUB269796 ncbi Rhodospirillum rubrum ATCC 111700
RRIC452659 ncbi Rickettsia rickettsii Iowa0
RRIC392021 ncbi Rickettsia rickettsii Sheila Smith0
RPRO272947 ncbi Rickettsia prowazekii Madrid E0
RPAL316058 ncbi Rhodopseudomonas palustris HaA20
RPAL316056 ncbi Rhodopseudomonas palustris BisB181
RPAL316055 ncbi Rhodopseudomonas palustris BisA530
RPAL258594 ncbi Rhodopseudomonas palustris CGA0090
RMET266264 ncbi Ralstonia metallidurans CH340
RMAS416276 ncbi Rickettsia massiliae MTU50
RLEG216596 ncbi Rhizobium leguminosarum bv. viciae 38410
RFEL315456 ncbi Rickettsia felis URRWXCal20
REUT264198 ncbi Ralstonia eutropha JMP1340
RETL347834 ncbi Rhizobium etli CFN 420
RCON272944 ncbi Rickettsia conorii Malish 70
RCAN293613 ncbi Rickettsia canadensis McKiel0
RBEL391896 ncbi Rickettsia bellii OSU 85-3890
RBEL336407 ncbi Rickettsia bellii RML369-C0
RALB246199 Ruminococcus albus 80
RAKA293614 ncbi Rickettsia akari Hartford0
PTOR263820 ncbi Picrophilus torridus DSM 97900
PSYR223283 ncbi Pseudomonas syringae pv. tomato str. DC30000
PSYR205918 ncbi Pseudomonas syringae pv. syringae B728a0
PSP56811 Psychrobacter sp.0
PSP312153 ncbi Polynucleobacter necessarius asymbioticus QLW-P1DMWA-10
PSP296591 ncbi Polaromonas sp. JS6660
PRUM264731 ncbi Prevotella ruminicola 230
PPEN278197 ncbi Pediococcus pentosaceus ATCC 257450
PNAP365044 ncbi Polaromonas naphthalenivorans CJ21
PMOB403833 ncbi Petrotoga mobilis SJ951
PMEN399739 ncbi Pseudomonas mendocina ymp0
PMAR93060 ncbi Prochlorococcus marinus MIT 92150
PMAR74547 ncbi Prochlorococcus marinus MIT 93130
PMAR74546 ncbi Prochlorococcus marinus MIT 93120
PMAR59920 ncbi Prochlorococcus marinus NATL2A0
PMAR167555 ncbi Prochlorococcus marinus NATL1A0
PMAR167546 ncbi Prochlorococcus marinus MIT 93010
PMAR167542 ncbi Prochlorococcus marinus MIT 95150
PMAR167540 Prochlorococcus marinus pastoris MED4ax0
PMAR167539 ncbi Prochlorococcus marinus marinus CCMP13750
PMAR146891 ncbi Prochlorococcus marinus AS96010
PINT246198 Prevotella intermedia 170
PING357804 ncbi Psychromonas ingrahamii 370
PHOR70601 ncbi Pyrococcus horikoshii OT31
PHAL326442 ncbi Pseudoalteromonas haloplanktis TAC1250
PGIN242619 ncbi Porphyromonas gingivalis W830
PFUR186497 ncbi Pyrococcus furiosus DSM 36380
PFLU220664 ncbi Pseudomonas fluorescens Pf-50
PFLU216595 ncbi Pseudomonas fluorescens SBW250
PDIS435591 ncbi Parabacteroides distasonis ATCC 85030
PCRY335284 ncbi Psychrobacter cryohalolentis K50
PCAR338963 ncbi Pelobacter carbinolicus DSM 23800
PATL342610 ncbi Pseudoalteromonas atlantica T6c0
PAST100379 Onion yellows phytoplasma0
PARC259536 ncbi Psychrobacter arcticus 273-40
OTSU357244 ncbi Orientia tsutsugamushi Boryong0
OIHE221109 ncbi Oceanobacillus iheyensis HTE8310
NWIN323098 ncbi Nitrobacter winogradskyi Nb-2550
NSP103690 ncbi Nostoc sp. PCC 71200
NSEN222891 ncbi Neorickettsia sennetsu Miyayama0
NOCE323261 ncbi Nitrosococcus oceani ATCC 197070
NMUL323848 ncbi Nitrosospira multiformis ATCC 251960
NMEN374833 ncbi Neisseria meningitidis 0534420
NMEN272831 ncbi Neisseria meningitidis FAM180
NMEN122587 ncbi Neisseria meningitidis Z24910
NMEN122586 ncbi Neisseria meningitidis MC580
NHAM323097 ncbi Nitrobacter hamburgensis X141
NGON242231 ncbi Neisseria gonorrhoeae FA 10900
NFAR247156 ncbi Nocardia farcinica IFM 101520
NEUT335283 ncbi Nitrosomonas eutropha C910
NEUR228410 ncbi Nitrosomonas europaea ATCC 197180
NARO279238 ncbi Novosphingobium aromaticivorans DSM 124440
MXAN246197 ncbi Myxococcus xanthus DK 16220
MVAN350058 ncbi Mycobacterium vanbaalenii PYR-10
MTUB419947 ncbi Mycobacterium tuberculosis H37Ra0
MTUB336982 ncbi Mycobacterium tuberculosis F110
MTHE349307 ncbi Methanosaeta thermophila PT0
MTHE187420 ncbi Methanothermobacter thermautotrophicus Delta H1
MTBRV ncbi Mycobacterium tuberculosis H37Rv0
MTBCDC ncbi Mycobacterium tuberculosis CDC15510
MSYN262723 ncbi Mycoplasma synoviae 530
MSTA339860 ncbi Methanosphaera stadtmanae DSM 30910
MSP400668 ncbi Marinomonas sp. MWYL10
MSP266779 ncbi Chelativorans sp. BNC10
MPUL272635 ncbi Mycoplasma pulmonis UAB CTIP0
MPNE272634 ncbi Mycoplasma pneumoniae M1290
MPEN272633 ncbi Mycoplasma penetrans HF-20
MMYC272632 ncbi Mycoplasma mycoides mycoides SC str. PG10
MMOB267748 ncbi Mycoplasma mobile 163K0
MMAZ192952 ncbi Methanosarcina mazei Go11
MMAR444158 ncbi Methanococcus maripaludis C61
MMAR426368 ncbi Methanococcus maripaludis C71
MMAR402880 ncbi Methanococcus maripaludis C50
MMAR394221 ncbi Maricaulis maris MCS100
MMAR368407 ncbi Methanoculleus marisnigri JR10
MMAR267377 ncbi Methanococcus maripaludis S21
MLEP272631 ncbi Mycobacterium leprae TN0
MLAB410358 ncbi Methanocorpusculum labreanum Z0
MKAN190192 ncbi Methanopyrus kandleri AV191
MJAN243232 ncbi Methanocaldococcus jannaschii DSM 26610
MHYO295358 ncbi Mycoplasma hyopneumoniae 2320
MHYO262722 ncbi Mycoplasma hyopneumoniae 74480
MHYO262719 ncbi Mycoplasma hyopneumoniae J0
MHUN323259 ncbi Methanospirillum hungatei JF-10
MGIL350054 ncbi Mycobacterium gilvum PYR-GCK0
MGEN243273 ncbi Mycoplasma genitalium G370
MFLO265311 ncbi Mesoplasma florum L10
MFLA265072 ncbi Methylobacillus flagellatus KT0
MEXT419610 ncbi Methylobacterium extorquens PA10
MCAP340047 ncbi Mycoplasma capricolum capricolum ATCC 273430
MBUR259564 ncbi Methanococcoides burtonii DSM 62420
MBOV410289 ncbi Mycobacterium bovis BCG str. Pasteur 1173P20
MBOV233413 ncbi Mycobacterium bovis AF2122/970
MBAR269797 ncbi Methanosarcina barkeri Fusaro0
MAVI243243 ncbi Mycobacterium avium 1041
MART243272 ncbi Mycoplasma arthritidis 158L3-10
MAQU351348 ncbi Marinobacter aquaeolei VT80
MAER449447 ncbi Microcystis aeruginosa NIES-8430
MAEO419665 ncbi Methanococcus aeolicus Nankai-30
MACE188937 ncbi Methanosarcina acetivorans C2A0
MABS561007 ncbi Mycobacterium abscessus ATCC 199770
LXYL281090 ncbi Leifsonia xyli xyli CTCB070
LWEL386043 ncbi Listeria welshimeri serovar 6b str. SLCC53340
LSPH444177 ncbi Lysinibacillus sphaericus C3-410
LSAK314315 ncbi Lactobacillus sakei sakei 23K0
LREU557436 ncbi Lactobacillus reuteri DSM 200160
LPNE400673 ncbi Legionella pneumophila Corby0
LPNE297246 ncbi Legionella pneumophila Paris0
LPNE297245 ncbi Legionella pneumophila Lens0
LPNE272624 ncbi Legionella pneumophila pneumophila Philadelphia 10
LPLA220668 ncbi Lactobacillus plantarum WCFS10
LMON265669 ncbi Listeria monocytogenes 4b F23650
LMON169963 ncbi Listeria monocytogenes EGD-e0
LMES203120 ncbi Leuconostoc mesenteroides mesenteroides ATCC 82930
LLAC272623 ncbi Lactococcus lactis lactis Il14030
LLAC272622 ncbi Lactococcus lactis cremoris SK110
LJOH257314 ncbi Lactobacillus johnsonii NCC 5330
LINT267671 ncbi Leptospira interrogans serovar Copenhageni str. Fiocruz L1-1300
LINT189518 ncbi Leptospira interrogans serovar Lai str. 566010
LINN272626 ncbi Listeria innocua Clip112620
LHEL405566 ncbi Lactobacillus helveticus DPC 45710
LGAS324831 ncbi Lactobacillus gasseri ATCC 333230
LDEL390333 ncbi Lactobacillus delbrueckii bulgaricus ATCC 118420
LDEL321956 ncbi Lactobacillus delbrueckii bulgaricus ATCC BAA-3650
LCHO395495 ncbi Leptothrix cholodnii SP-61
LCAS321967 ncbi Lactobacillus casei ATCC 3340
LBRE387344 ncbi Lactobacillus brevis ATCC 3670
LBOR355277 ncbi Leptospira borgpetersenii serovar Hardjo-bovis JB1970
LBOR355276 ncbi Leptospira borgpetersenii serovar Hardjo-bovis L5500
LBIF456481 ncbi Leptospira biflexa serovar Patoc strain Patoc 1 (Paris)0
LBIF355278 ncbi Leptospira biflexa serovar Patoc strain Patoc 1 (Ames)0
LACI272621 ncbi Lactobacillus acidophilus NCFM0
JSP375286 ncbi Janthinobacterium sp. Marseille0
ILOI283942 ncbi Idiomarina loihiensis L2TR0
HWAL362976 ncbi Haloquadratum walsbyi DSM 167900
HPYL85963 ncbi Helicobacter pylori J990
HPYL357544 ncbi Helicobacter pylori HPAG10
HPY ncbi Helicobacter pylori 266950
HNEP81032 Hyphomonas neptunium0
HMOD498761 ncbi Heliobacterium modesticaldum Ice10
HHEP235279 ncbi Helicobacter hepaticus ATCC 514490
HCHE349521 ncbi Hahella chejuensis KCTC 23960
HAUR316274 ncbi Herpetosiphon aurantiacus ATCC 237790
HACI382638 ncbi Helicobacter acinonychis Sheeba0
GVIO251221 ncbi Gloeobacter violaceus PCC 74210
GTHE420246 ncbi Geobacillus thermodenitrificans NG80-20
GOXY290633 ncbi Gluconobacter oxydans 621H0
GKAU235909 ncbi Geobacillus kaustophilus HTA4260
GFOR411154 ncbi Gramella forsetii KT08030
GBET391165 ncbi Granulibacter bethesdensis CGDNIH10
FTUL458234 ncbi Francisella tularensis holarctica FTNF002-000
FTUL418136 ncbi Francisella tularensis tularensis WY96-34180
FTUL401614 ncbi Francisella novicida U1120
FTUL393115 ncbi Francisella tularensis tularensis FSC1980
FTUL393011 ncbi Francisella tularensis holarctica OSU180
FTUL351581 Francisella tularensis holarctica FSC2000
FSUC59374 ncbi Fibrobacter succinogenes succinogenes S850
FSP1855 Frankia sp. EAN1pec0
FSP106370 ncbi Frankia sp. CcI30
FRANT ncbi Francisella tularensis tularensis SCHU S40
FPHI484022 ncbi Francisella philomiragia philomiragia ATCC 250170
FNUC190304 ncbi Fusobacterium nucleatum nucleatum ATCC 255860
FNOD381764 ncbi Fervidobacterium nodosum Rt17-B10
FMAG334413 ncbi Finegoldia magna ATCC 293280
FJOH376686 ncbi Flavobacterium johnsoniae UW1010
FALN326424 ncbi Frankia alni ACN14a0
ERUM302409 ncbi Ehrlichia ruminantium Gardel0
ERUM254945 ncbi Ehrlichia ruminantium Welgevonden0
ELIT314225 ncbi Erythrobacter litoralis HTCC25940
EFAE226185 ncbi Enterococcus faecalis V5830
ECHA205920 ncbi Ehrlichia chaffeensis Arkansas0
ECAN269484 ncbi Ehrlichia canis Jake0
DRAD243230 ncbi Deinococcus radiodurans R10
DPSY177439 ncbi Desulfotalea psychrophila LSv541
DNOD246195 ncbi Dichelobacter nodosus VCS1703A0
DGEO319795 ncbi Deinococcus geothermalis DSM 113000
CTRA471473 ncbi Chlamydia trachomatis L2b/UCH-1/proctitis0
CTRA471472 ncbi Chlamydia trachomatis 434/Bu0
CTET212717 ncbi Clostridium tetani E880
CTEP194439 ncbi Chlorobium tepidum TLS1
CSUL444179 ncbi Candidatus Sulcia muelleri GWSS0
CSP78 Caulobacter sp.0
CSAL290398 ncbi Chromohalobacter salexigens DSM 30430
CRUT413404 ncbi Candidatus Ruthia magnifica Cm (Calyptogena magnifica)0
CPSY167879 ncbi Colwellia psychrerythraea 34H0
CPRO264201 ncbi Candidatus Protochlamydia amoebophila UWE250
CPNE182082 ncbi Chlamydophila pneumoniae TW-1830
CPNE138677 ncbi Chlamydophila pneumoniae J1380
CPNE115713 ncbi Chlamydophila pneumoniae CWL0290
CPNE115711 ncbi Chlamydophila pneumoniae AR390
CPHY357809 ncbi Clostridium phytofermentans ISDg0
CPER289380 ncbi Clostridium perfringens SM1010
CPER195103 ncbi Clostridium perfringens ATCC 131240
CPER195102 ncbi Clostridium perfringens 130
CPEL335992 ncbi Candidatus Pelagibacter ubique HTCC10620
CNOV386415 ncbi Clostridium novyi NT0
CMUR243161 ncbi Chlamydia muridarum Nigg0
CMIC443906 ncbi Clavibacter michiganensis michiganensis NCPPB 3820
CMIC31964 ncbi Clavibacter michiganensis sepedonicus0
CMET456442 ncbi Candidatus Methanoregula boonei 6A80
CMAQ397948 ncbi Caldivirga maquilingensis IC-1670
CKLU431943 ncbi Clostridium kluyveri DSM 5550
CJEJ360109 ncbi Campylobacter jejuni doylei 269.970
CJEJ195099 ncbi Campylobacter jejuni RM12210
CJEJ192222 ncbi Campylobacter jejuni jejuni NCTC 111680
CJEI306537 ncbi Corynebacterium jeikeium K4110
CJAP155077 Cellvibrio japonicus0
CHUT269798 ncbi Cytophaga hutchinsonii ATCC 334060
CGLU196627 ncbi Corynebacterium glutamicum ATCC 130320
CFET360106 ncbi Campylobacter fetus fetus 82-400
CFEL264202 ncbi Chlamydophila felis Fe/C-560
CEFF196164 ncbi Corynebacterium efficiens YS-3140
CDIP257309 ncbi Corynebacterium diphtheriae NCTC 131290
CDIF272563 ncbi Clostridium difficile 6300
CCAV227941 ncbi Chlamydophila caviae GPIC0
CBUR434922 ncbi Coxiella burnetii Dugway 5J108-1110
CBUR360115 ncbi Coxiella burnetii RSA 3310
CBUR227377 ncbi Coxiella burnetii RSA 4930
CBOT536232 ncbi Clostridium botulinum A2 str. Kyoto1
CBOT515621 ncbi Clostridium botulinum Ba4 str. 6571
CBOT508765 ncbi Clostridium botulinum B str. Eklund 17B0
CBOT498213 ncbi Clostridium botulinum B1 str. Okra1
CBOT441772 ncbi Clostridium botulinum F str. Langeland1
CBOT441771 ncbi Clostridium botulinum A str. Hall1
CBOT441770 ncbi Clostridium botulinum A str. ATCC 193971
CBOT36826 Clostridium botulinum A1
CBLO291272 ncbi Candidatus Blochmannia pennsylvanicus BPEN0
CBLO203907 ncbi Candidatus Blochmannia floridanus0
CBEI290402 ncbi Clostridium beijerinckii NCIMB 80520
CAULO ncbi Caulobacter crescentus CB150
CACE272562 ncbi Clostridium acetobutylicum ATCC 8240
CABO218497 ncbi Chlamydophila abortus S26/30
BWEI315730 ncbi Bacillus weihenstephanensis KBAB40
BTUR314724 ncbi Borrelia turicatae 91E1350
BTRI382640 ncbi Bartonella tribocorum CIP 1054760
BTHU412694 ncbi Bacillus thuringiensis Al Hakam0
BTHU281309 ncbi Bacillus thuringiensis serovar konkukian str. 97-270
BTHE226186 ncbi Bacteroides thetaiotaomicron VPI-54820
BSUI470137 ncbi Brucella suis ATCC 234450
BSUI204722 ncbi Brucella suis 13300
BSUB ncbi Bacillus subtilis subtilis 1680
BSP376 Bradyrhizobium sp.0
BSP107806 ncbi Buchnera aphidicola APS (Acyrthosiphon pisum)0
BQUI283165 ncbi Bartonella quintana Toulouse0
BPUM315750 ncbi Bacillus pumilus SAFR-0320
BPET94624 Bordetella petrii0
BPER257313 ncbi Bordetella pertussis Tohama I0
BOVI236 Brucella ovis0
BMEL359391 ncbi Brucella melitensis biovar Abortus 23080
BMEL224914 ncbi Brucella melitensis bv. 1 str. 16M0
BLON206672 ncbi Bifidobacterium longum NCC27050
BLIC279010 ncbi Bacillus licheniformis ATCC 145800
BJAP224911 ncbi Bradyrhizobium japonicum USDA 1100
BHER314723 ncbi Borrelia hermsii DAH0
BHEN283166 ncbi Bartonella henselae Houston-10
BHAL272558 ncbi Bacillus halodurans C-1250
BGAR290434 ncbi Borrelia garinii PBi0
BFRA295405 ncbi Bacteroides fragilis YCH460
BFRA272559 ncbi Bacteroides fragilis NCTC 93430
BCLA66692 ncbi Bacillus clausii KSM-K160
BCIC186490 Candidatus Baumannia cicadellinicola0
BCER572264 ncbi Bacillus cereus 03BB1020
BCER405917 Bacillus cereus W0
BCER315749 ncbi Bacillus cytotoxicus NVH 391-980
BCER288681 ncbi Bacillus cereus E33L0
BCER226900 ncbi Bacillus cereus ATCC 145790
BCAN483179 ncbi Brucella canis ATCC 233650
BBUR224326 ncbi Borrelia burgdorferi B310
BBAC360095 ncbi Bartonella bacilliformis KC5830
BBAC264462 ncbi Bdellovibrio bacteriovorus HD1000
BAPH372461 ncbi Buchnera aphidicola Cc (Cinara cedri)0
BAPH198804 ncbi Buchnera aphidicola Sg (Schizaphis graminum)0
BANT592021 ncbi Bacillus anthracis A02480
BANT568206 ncbi Bacillus anthracis CDC 6840
BANT261594 ncbi Bacillus anthracis Ames Ancestor0
BANT260799 ncbi Bacillus anthracis Sterne0
BAMY326423 ncbi Bacillus amyloliquefaciens FZB420
BAFZ390236 ncbi Borrelia afzelii PKo0
BABO262698 ncbi Brucella abortus bv. 1 str. 9-9410
AYEL322098 ncbi Aster yellows witches-broom phytoplasma AYWB0
AVAR240292 ncbi Anabaena variabilis ATCC 294130
AURANTIMONAS Aurantimonas manganoxydans SI85-9A10
ASP62977 ncbi Acinetobacter sp. ADP10
ASP1667 Arthrobacter sp.0
APHA212042 ncbi Anaplasma phagocytophilum HZ0
ANAE240017 Actinomyces oris MG10
AMAR329726 ncbi Acaryochloris marina MBIC110170
AMAR234826 ncbi Anaplasma marginale St. Maries0
ALAI441768 ncbi Acholeplasma laidlawii PG-8A0
AFER243159 ncbi Acidithiobacillus ferrooxidans ATCC 232701
ACEL351607 ncbi Acidothermus cellulolyticus 11B0
ABUT367737 ncbi Arcobacter butzleri RM40180
ABOR393595 ncbi Alcanivorax borkumensis SK20
AAVE397945 ncbi Acidovorax citrulli AAC00-11
AAUR290340 ncbi Arthrobacter aurescens TC10


Names of the homologs of the genes in the group in each of these orgs
  G6902   G6899   G6847   EG11946   EG11857   EG11228   EG10233   
ZMOB264203
XORY360094
XORY342109
XORY291331
XFAS405440
XFAS183190
XFAS160492
XCAM487884
XCAM316273
XCAM314565
XCAM190485
XAXO190486
WPIP955
WPIP80849
VCHO345073
VCHO
UURE95667
UURE95664
UPAR505682
UMET351160
TWHI218496
TWHI203267
TVOL273116
TTUR377629
TTHE300852
TTEN273068 TTE1707
TSP28240 TRQ2_0538
TSP1755
TPSE340099
TPET390874 TPET_0524
TPAL243276
TMAR243274 TM_0396
TLET416591
TFUS269800
TERY203124
TELO197221
TDEN243275
TCRU317025
TACI273075
STRO369723 STROP_0178
STHE322159
STHE299768
STHE264199
SSUI391296
SSUI391295
SSP84588
SSP64471
SSP644076
SSP321332
SSP321327
SSP292414
SSP1148
SSP1131
SSAP342451
SRUB309807
SPYO370554
SPYO370553
SPYO370552
SPYO370551
SPYO319701
SPYO293653
SPYO286636
SPYO198466
SPYO193567
SPYO186103
SPYO160490
SPNE488221
SPNE487214
SPNE487213
SPNE171101
SPNE170187
SPNE1313
SMUT210007
SMED366394
SHAE279808
SGOR29390
SGLO343509
SEPI176280
SEPI176279
SELO269084
SDEN318161
SCO
SAVE227882
SAUR93062
SAUR93061
SAUR426430
SAUR418127
SAUR367830
SAUR359787
SAUR359786
SAUR282459
SAUR282458
SAUR273036
SAUR196620
SAUR158879
SAUR158878
SARE391037 SARE_0193
SALA317655
SAGA211110
SAGA208435
SAGA205921
SACI330779
RTYP257363
RSPH349101
RSPH272943
RSOL267608
RSAL288705
RRUB269796
RRIC452659
RRIC392021
RPRO272947
RPAL316058
RPAL316056 RPC_4577
RPAL316055
RPAL258594
RMET266264
RMAS416276
RLEG216596
RFEL315456
REUT264198
RETL347834
RCON272944
RCAN293613
RBEL391896
RBEL336407
RALB246199
RAKA293614
PTOR263820
PSYR223283
PSYR205918
PSP56811
PSP312153
PSP296591
PRUM264731
PPEN278197
PNAP365044 PNAP_0048
PMOB403833 PMOB_0382
PMEN399739
PMAR93060
PMAR74547
PMAR74546
PMAR59920
PMAR167555
PMAR167546
PMAR167542
PMAR167540
PMAR167539
PMAR146891
PINT246198
PING357804
PHOR70601 PH0893
PHAL326442
PGIN242619
PFUR186497
PFLU220664
PFLU216595
PDIS435591
PCRY335284
PCAR338963
PATL342610
PAST100379
PARC259536
OTSU357244
OIHE221109
NWIN323098
NSP103690
NSEN222891
NOCE323261
NMUL323848
NMEN374833
NMEN272831
NMEN122587
NMEN122586
NHAM323097 NHAM_3127
NGON242231
NFAR247156
NEUT335283
NEUR228410
NARO279238
MXAN246197
MVAN350058
MTUB419947
MTUB336982
MTHE349307
MTHE187420 MTH1714
MTBRV
MTBCDC
MSYN262723
MSTA339860
MSP400668
MSP266779
MPUL272635
MPNE272634
MPEN272633
MMYC272632
MMOB267748
MMAZ192952 MM3327
MMAR444158 MMARC6_1679
MMAR426368 MMARC7_0221
MMAR402880
MMAR394221
MMAR368407
MMAR267377 MMP0979
MLEP272631
MLAB410358
MKAN190192 MK0725
MJAN243232
MHYO295358
MHYO262722
MHYO262719
MHUN323259
MGIL350054
MGEN243273
MFLO265311
MFLA265072
MEXT419610
MCAP340047
MBUR259564
MBOV410289
MBOV233413
MBAR269797
MAVI243243 MAV_0423
MART243272
MAQU351348
MAER449447
MAEO419665
MACE188937
MABS561007
LXYL281090
LWEL386043
LSPH444177
LSAK314315
LREU557436
LPNE400673
LPNE297246
LPNE297245
LPNE272624
LPLA220668
LMON265669
LMON169963
LMES203120
LLAC272623
LLAC272622
LJOH257314
LINT267671
LINT189518
LINN272626
LHEL405566
LGAS324831
LDEL390333
LDEL321956
LCHO395495 LCHO_1816
LCAS321967
LBRE387344
LBOR355277
LBOR355276
LBIF456481
LBIF355278
LACI272621
JSP375286
ILOI283942
HWAL362976
HPYL85963
HPYL357544
HPY
HNEP81032
HMOD498761
HHEP235279
HCHE349521
HAUR316274
HACI382638
GVIO251221
GTHE420246
GOXY290633
GKAU235909
GFOR411154
GBET391165
FTUL458234
FTUL418136
FTUL401614
FTUL393115
FTUL393011
FTUL351581
FSUC59374
FSP1855
FSP106370
FRANT
FPHI484022
FNUC190304
FNOD381764
FMAG334413
FJOH376686
FALN326424
ERUM302409
ERUM254945
ELIT314225
EFAE226185
ECHA205920
ECAN269484
DRAD243230
DPSY177439 DP3071
DNOD246195
DGEO319795
CTRA471473
CTRA471472
CTET212717
CTEP194439 CT_0495
CSUL444179
CSP78
CSAL290398
CRUT413404
CPSY167879
CPRO264201
CPNE182082
CPNE138677
CPNE115713
CPNE115711
CPHY357809
CPER289380
CPER195103
CPER195102
CPEL335992
CNOV386415
CMUR243161
CMIC443906
CMIC31964
CMET456442
CMAQ397948
CKLU431943
CJEJ360109
CJEJ195099
CJEJ192222
CJEI306537
CJAP155077
CHUT269798
CGLU196627
CFET360106
CFEL264202
CEFF196164
CDIP257309
CDIF272563
CCAV227941
CBUR434922
CBUR360115
CBUR227377
CBOT536232 CLM_1507
CBOT515621 CLJ_B1447
CBOT508765
CBOT498213 CLD_3225
CBOT441772 CLI_1427
CBOT441771 CLC_1370
CBOT441770 CLB_1360
CBOT36826 CBO1332
CBLO291272
CBLO203907
CBEI290402
CAULO
CACE272562
CABO218497
BWEI315730
BTUR314724
BTRI382640
BTHU412694
BTHU281309
BTHE226186
BSUI470137
BSUI204722
BSUB
BSP376
BSP107806
BQUI283165
BPUM315750
BPET94624
BPER257313
BOVI236
BMEL359391
BMEL224914
BLON206672
BLIC279010
BJAP224911
BHER314723
BHEN283166
BHAL272558
BGAR290434
BFRA295405
BFRA272559
BCLA66692
BCIC186490
BCER572264
BCER405917
BCER315749
BCER288681
BCER226900
BCAN483179
BBUR224326
BBAC360095
BBAC264462
BAPH372461
BAPH198804
BANT592021
BANT568206
BANT261594
BANT260799
BAMY326423
BAFZ390236
BABO262698
AYEL322098
AVAR240292
AURANTIMONAS
ASP62977
ASP1667
APHA212042
ANAE240017
AMAR329726
AMAR234826
ALAI441768
AFER243159 AFE_0919
ACEL351607
ABUT367737
ABOR393595
AAVE397945 AAVE_0662
AAUR290340


Organism features enriched in list (features available for 391 out of the 422 orgs in the list)
Feature    Pvalue       Num occurrences in list  Total num occurrences  
Arrangment:Chains 0.00006147792
Arrangment:Clusters 0.00869781617
Disease:gastroenteritis 0.0000114113
Endospores:Yes 0.00044114653
GC_Content_Range4:0-40 2.448e-22193213
GC_Content_Range4:40-60 7.096e-8121224
GC_Content_Range4:60-100 9.291e-676145
GC_Content_Range7:0-30 2.643e-94747
GC_Content_Range7:30-40 6.937e-13146166
GC_Content_Range7:50-60 8.506e-848107
GC_Content_Range7:60-70 8.338e-669134
Genome_Size_Range5:0-2 3.310e-9132155
Genome_Size_Range5:2-4 0.0004875149197
Genome_Size_Range5:4-6 1.857e-1286184
Genome_Size_Range5:6-10 0.00737672447
Genome_Size_Range9:0-1 0.00021612627
Genome_Size_Range9:1-2 4.525e-6106128
Genome_Size_Range9:3-4 0.00491196177
Genome_Size_Range9:4-5 3.971e-64596
Genome_Size_Range9:5-6 8.674e-64188
Gram_Stain:Gram_Neg 3.002e-10189333
Gram_Stain:Gram_Pos 3.156e-12133150
Habitat:Host-associated 0.0003006156206
Motility:No 3.335e-6123151
Motility:Yes 7.532e-7152267
Optimal_temp.:30-37 0.00066031818
Oxygen_Req:Aerobic 0.0000101146185
Oxygen_Req:Facultative 0.0000240113201
Shape:Coccus 3.019e-67282
Shape:Rod 1.317e-6207347
Shape:Sphere 0.00426341819
Temp._range:Hyperthermophilic 0.0034481923



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ORGANISMS ENRICHED FOR GROUP:

Total number of orgs: 12
Effective number of orgs (counting one per cluster within 468 clusters): 11

Organism list
Homologs in each organism in the list
Features enriched in organism list


Follow (ncbi) link, when present, to find the set of organism features for each organism
Org ID  Org Name    Pvalue       # genes in tgt genome found in org  # genes in group found in org  
TPEN368408 ncbi Thermofilum pendens Hrk 5 4.662e-63457
PAER178306 ncbi Pyrobaculum aerophilum IM2 5.057e-63497
PARS340102 ncbi Pyrobaculum arsenaticum DSM 13514 6.421e-63617
TKOD69014 ncbi Thermococcus kodakarensis KOD1 0.00003944677
HBUT415426 ncbi Hyperthermus butylicus DSM 5456 0.00011672806
DETH243164 ncbi Dehalococcoides ethenogenes 195 0.00016865747
DSP216389 ncbi Dehalococcoides sp. BAV1 0.00019275857
DSP255470 ncbi Dehalococcoides sp. CBDB1 0.00020705917
PISL384616 ncbi Pyrobaculum islandicum DSM 4184 0.00027013226
PACN267747 ncbi Propionibacterium acnes KPA171202 0.00306228677
WSUC273121 ncbi Wolinella succinogenes DSM 1740 0.00321428737
APER272557 ncbi Aeropyrum pernix K1 0.00747502985


Names of the homologs of the genes in the group in each of these orgs
  G6902   G6899   G6847   EG11946   EG11857   EG11228   EG10233   
TPEN368408 TPEN_0189TPEN_1122TPEN_0189TPEN_1122TPEN_1409TPEN_1409TPEN_1409
PAER178306 PAE1263PAE1263PAE1263PAE1263PAE2661PAE2661PAE1263
PARS340102 PARS_0387PARS_0387PARS_0953PARS_0387PARS_0953PARS_0953PARS_0953
TKOD69014 TK2075TK2075TK2075TK2075TK2075TK2075TK2075
HBUT415426 HBUT_1052HBUT_1052HBUT_0372HBUT_1052HBUT_1052HBUT_1052
DETH243164 DET_0112DET_0103DET_0112DET_0103DET_0112DET_0112DET_0112
DSP216389 DEHABAV1_0256DEHABAV1_0265DEHABAV1_0256DEHABAV1_0265DEHABAV1_0256DEHABAV1_0256DEHABAV1_0256
DSP255470 CBDBA131CBDBA121CBDBA131CBDBA121CBDBA131CBDBA131CBDBA131
PISL384616 PISL_1986PISL_1995PISL_1986PISL_1995PISL_1995PISL_1995
PACN267747 PPA0516PPA0516PPA0516PPA0516PPA0516PPA0516PPA0516
WSUC273121 WS0936WS0117WS1431WS0117WS0936WS0936WS1431
APER272557 APE2605APE2605APE2605APE2605APE2605


Organism features enriched in list (features available for 12 out of the 12 orgs in the list)
Feature    Pvalue       Num occurrences in list  Total num occurrences  
Endospores:No 0.00569439211
GC_Content_Range4:40-60 8.595e-612224
GC_Content_Range7:50-60 0.00181037107
Genome_Size_Range9:1-2 0.00523197128
Gram_Stain:Gram_Neg 0.00055401333
Optimal_temp.:100 0.001147023
Oxygen_Req:Anaerobic 0.00001479102
Pathogenic_in:No 0.00944399226
Salinity:Mesophilic 0.0000655413
Shape:Irregular_coccus 0.0002060417
Temp._range:Hyperthermophilic 1.466e-6623
Temp._range:Mesophilic 0.00029384473



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ORGANISMS DEPLETED FOR GROUP:




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PHYLOGENETIC PROFILE SIMILARITY WITH KNOWN PATHWAYS:

Pathways or complexes with absolute value of Pearson coefficient with respect to candidate larger than 0.4 are listed below
The candidate is assumed to exist in orgs listed in section List of organisms containing most genes from the group


Pathway or complex  # Orgs containing it  # of those orgs also containing candidate  Pearson Coeff  
GALACTITOLCAT-PWY (galactitol degradation)73500.4729
PWY0-1315 (L-lactaldehyde degradation (anaerobic))45360.4453
PWY-5861 (superpathway of demethylmenaquinone-8 biosynthesis)50370.4255
PWY0-901 (selenocysteine biosynthesis I (bacteria))230900.4122
PWY0-1241 (ADP-L-glycero-β-D-manno-heptose biosynthesis)218870.4100
PWY-5674 (nitrate reduction IV (dissimilatory))106560.4044



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PAIRWISE GENOME CONTEXT SCORE MATRIX:

  G6899   G6847   EG11946   EG11857   EG11228   EG10233   
G69020.9990590.9991240.9986910.9985020.9985040.999001
G68990.9994380.9997770.998820.9987570.999408
G68470.9991110.9991410.9993250.999806
EG119460.9990080.9988030.999151
EG118570.9998070.999223
EG112280.999389
EG10233



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PAIRWISE BLAST SCORES:

  G6902   G6899   G6847   EG11946   EG11857   EG11228   EG10233   
G69020.0f04.6e-149.6e-14--1.6e-13-
G6899-0.0f02.5e-222.5e-54--7.4e-23
G6847--0.0f0--5.0e-243.1e-111
EG11946-2.5e-546.6e-220.0f0--4.1e-22
EG11857--1.2e-22-0.0f05.9e-1242.5e-22
EG11228--5.0e-24-1.7e-1280.0f02.4e-24
EG10233--3.1e-111--2.4e-240.0f0



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PATHWAYS OR PROTEIN COMPLEX MATCHES IN TARGET ORG:

For each case, all genes involved in the pathway or complex are listed. For each gene we list: a tag indicating whether the gene is part of the candidate list or not, the average and the minimum scores of the gene to the candidate list, the gene name, and its product names.

- PWY0-1355 (formate to trimethylamine N-oxide electron transfer) (degree of match pw to cand: 0.200, degree of match cand to pw: 0.286, average score: 0.730)
  Genes in pathway or complex:
             0.9842 0.9289 EG11229 (fdnI) FDNI-MONOMER (formate dehydrogenase N, γ subunit)
   *in cand* 0.9992 0.9985 EG11228 (fdnH) FDNH-MONOMER (formate dehydrogenase N, β subunit)
                NIL    NIL EG11227 (fdnG) FDNG-MONOMER (formate dehydrogenase N, α subunit)
             0.9941 0.9844 EG11856 (fdoI) FDOI-MONOMER (formate dehydrogenase-O, γ subunit)
   *in cand* 0.9992 0.9985 EG11857 (fdoH) FDOH-MONOMER (formate dehydrogenase-O, β subunit)
                NIL    NIL EG11858 (fdoG) FDOG-MONOMER (formate dehydrogenase-O, α subunit)
             0.7175 0.4922 G7023 (torY) G7023-MONOMER (trimethylamine N-oxide reductase III, c-type cytochrome subunit)
             0.8106 0.4894 G7022 (torZ) G7022-MONOMER (trimethylamine N-oxide reductase III, TorZ subunit)
             0.8185 0.4126 EG11814 (torA) TORA-MONOMER (trimethylamine N-oxide reductase, catalytic subunit)
             0.7207 0.4321 EG11815 (torC) EG11815-MONOMER (TorC trimethylamine N-oxide reductase, cytochrome c-type subunit)
  Genes in candidate but not in this pathway or complex:
   *in cand* 0.9994 0.9990 EG10233 (dmsB) DMSB-MONOMER (dimethyl sulfoxide reductase, chain B)
   *in cand* 0.9992 0.9987 EG11946 (nrfC) NRFC-MONOMER (formate-dependent nitrite reductase, 4Fe-4S subunit)
   *in cand* 0.9994 0.9991 G6847 (ynfG) G6847-MONOMER (oxidoreductase, predicted Fe-S subunit)
   *in cand* 0.9993 0.9988 G6899 (ydhX) G6899-MONOMER (predicted 4Fe-4S ferredoxin-type protein)
   *in cand* 0.9990 0.9985 G6902 (ydhY) G6902-MONOMER (predicted 4Fe-4S ferredoxin-type protein)

- PWY0-1321 (formate to nitrate electron transfer) (degree of match pw to cand: 0.167, degree of match cand to pw: 0.286, average score: 0.844)
  Genes in pathway or complex:
             0.9842 0.9289 EG11229 (fdnI) FDNI-MONOMER (formate dehydrogenase N, γ subunit)
   *in cand* 0.9992 0.9985 EG11228 (fdnH) FDNH-MONOMER (formate dehydrogenase N, β subunit)
                NIL    NIL EG11227 (fdnG) FDNG-MONOMER (formate dehydrogenase N, α subunit)
             0.9941 0.9844 EG11856 (fdoI) FDOI-MONOMER (formate dehydrogenase-O, γ subunit)
   *in cand* 0.9992 0.9985 EG11857 (fdoH) FDOH-MONOMER (formate dehydrogenase-O, β subunit)
                NIL    NIL EG11858 (fdoG) FDOG-MONOMER (formate dehydrogenase-O, α subunit)
             0.8895 0.3695 EG10638 (narG) NARG-MONOMER (nitrate reductase A, α subunit)
             0.9973 0.9931 EG10639 (narH) NARH-MONOMER (nitrate reductase A, β subunit)
             0.7363 0.3900 EG10640 (narI) NARI-MONOMER (nitrate reductase A, γ subunit)
             0.7741 0.3478 EG10644 (narV) NARV-MONOMER (nitrate reductase Z, γ subunit)
             0.8836 0.3193 EG10648 (narZ) NARZ-MONOMER (nitrate reductase Z, α subunit)
             0.9973 0.9929 EG10647 (narY) NARY-MONOMER (nitrate reductase Z, β subunit)
  Genes in candidate but not in this pathway or complex:
   *in cand* 0.9994 0.9990 EG10233 (dmsB) DMSB-MONOMER (dimethyl sulfoxide reductase, chain B)
   *in cand* 0.9992 0.9987 EG11946 (nrfC) NRFC-MONOMER (formate-dependent nitrite reductase, 4Fe-4S subunit)
   *in cand* 0.9994 0.9991 G6847 (ynfG) G6847-MONOMER (oxidoreductase, predicted Fe-S subunit)
   *in cand* 0.9993 0.9988 G6899 (ydhX) G6899-MONOMER (predicted 4Fe-4S ferredoxin-type protein)
   *in cand* 0.9990 0.9985 G6902 (ydhY) G6902-MONOMER (predicted 4Fe-4S ferredoxin-type protein)

- PWY0-1356 (formate to dimethyl sulfoxide electron transfer) (degree of match pw to cand: 0.333, degree of match cand to pw: 0.429, average score: 0.903)
  Genes in pathway or complex:
             0.9842 0.9289 EG11229 (fdnI) FDNI-MONOMER (formate dehydrogenase N, γ subunit)
   *in cand* 0.9992 0.9985 EG11228 (fdnH) FDNH-MONOMER (formate dehydrogenase N, β subunit)
                NIL    NIL EG11227 (fdnG) FDNG-MONOMER (formate dehydrogenase N, α subunit)
             0.9941 0.9844 EG11856 (fdoI) FDOI-MONOMER (formate dehydrogenase-O, γ subunit)
   *in cand* 0.9992 0.9985 EG11857 (fdoH) FDOH-MONOMER (formate dehydrogenase-O, β subunit)
                NIL    NIL EG11858 (fdoG) FDOG-MONOMER (formate dehydrogenase-O, α subunit)
             0.9543 0.8879 EG10234 (dmsC) DMSC-MONOMER (dimethyl sulfoxide reductase, chain C)
   *in cand* 0.9994 0.9990 EG10233 (dmsB) DMSB-MONOMER (dimethyl sulfoxide reductase, chain B)
             0.9656 0.8765 EG10232 (dmsA) DMSA-MONOMER (dimethyl sulfoxide reductase, chain A)
  Genes in candidate but not in this pathway or complex:
   *in cand* 0.9992 0.9987 EG11946 (nrfC) NRFC-MONOMER (formate-dependent nitrite reductase, 4Fe-4S subunit)
   *in cand* 0.9994 0.9991 G6847 (ynfG) G6847-MONOMER (oxidoreductase, predicted Fe-S subunit)
   *in cand* 0.9993 0.9988 G6899 (ydhX) G6899-MONOMER (predicted 4Fe-4S ferredoxin-type protein)
   *in cand* 0.9990 0.9985 G6902 (ydhY) G6902-MONOMER (predicted 4Fe-4S ferredoxin-type protein)



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GENOME CONTEXT INFORMATION:

Each row corresponds to a replicon in an organism, each column to a gene in the candidate. The second column indicates whether the organims was included in the list used to compute the genome context scores or not. Some organisms are not included because they are phylogenetically too similar to others already in the list.
The number in the matrix indicate the position of the homolog of the gene in the replicon. All numbers are relative to the smaller one, which is assigned a position of zero. Two columns with the same number indicate that the two genes matched the same gene in that organism.

Genome browser links for gene clusters

The links below opens a genome browser BioCyc page for each cluster of genes in the target genome. These pages shows the central gene of the cluster in the target genome and its best homolog in the reference genomes, for the genomes that contain homologs for at least 75% of the genes in the group. Only one genome per phylogenetic cluster of organisms is shown, to keep the list smaller.

G6899 G6902 (centered at G6902)
EG10233 (centered at EG10233)
EG11228 (centered at EG11228)
EG11857 (centered at EG11857)
EG11946 (centered at EG11946)
G6847 (centered at G6847)


ORG:REPLICON:CIRC?\GENE  IN REF LIST  G6902   G6899   G6847   EG11946   EG11857   EG11228   EG10233   
157/623162/623160/623155/623166/623164/623167/623
AAEO224324:0:Tyes-13613613600136
AAVE397945:0:Tyes------0
ABAC204669:0:Tyes0208920892089002089
ABAU360910:0:Tyes0-0-000
ACAU438753:0:Tyes---000-
ACRY349163:8:Tyes-023080230823082308
ADEH290397:0:Tyes604228602286296529650
AEHR187272:0:Tyes659010340103410341034
AFER243159:0:Tyes---0---
AFUL224325:0:Tyes0218002180--2180
AHYD196024:0:Tyes74023174023100740
AMET293826:0:Tyes325-3250-325325
AORE350688:0:Tyes19530-884---
APER272557:0:Tyes-000-00
APLE416269:0:Tyes-0161107947941611
APLE434271:0:Tno-0161307717711613
ASAL382245:5:Tyes-51851851800518
ASP232721:2:Tyes14960-00--
ASP62928:0:Tyes0001553--0
ASP76114:2:Tyes2354002716120212022716
BAMB339670:2:Tno--0-000
BAMB398577:2:Tno--0-000
BBRO257310:0:Tyes0000---
BCEN331271:1:Tno--0-000
BCEN331272:2:Tyes--0-000
BMAL243160:0:Tno344344034400344
BMAL320388:0:Tno0060606066060
BMAL320389:0:Tyes1729172901729001729
BPAR257311:0:Tno00-0---
BPSE272560:0:Tyes637637063700637
BPSE320372:0:Tno836836083600836
BPSE320373:0:Tno819819081900819
BSP36773:1:Tyes000097970
BTHA271848:0:Tno--0-000
BVIE269482:6:Tyes--0-000
BXEN266265:1:Tyes-78578578500785
CBOT36826:1:Tno0------
CBOT441770:0:Tyes0------
CBOT441771:0:Tno0------
CBOT441772:1:Tno0------
CBOT498213:1:Tno0------
CBOT515621:2:Tyes0------
CBOT536232:0:Tno0------
CCHL340177:0:Tyes-013460--1346
CCON360104:2:Tyes43804380--438
CCUR360105:0:Tyes-05280--528
CDES477974:0:Tyes--00547547547
CHOM360107:1:Tyes-0-0---
CHYD246194:0:Tyes887172017201720001720
CJEJ354242:2:Tyes00000-0
CJEJ407148:0:Tno00000-0
CKOR374847:0:Tyes-00-000
CSP501479:7:Fyes-0-000-
CSP501479:8:Fyes--0---0
CTEP194439:0:Tyes---0---
CVES412965:0:Tyes--0---0
CVIO243365:0:Tyes0-0-000
DARO159087:0:Tyes077976077900760
DDES207559:0:Tyes0209209209247247609
DETH243164:0:Tyes9090999
DHAF138119:0:Tyes019504591278127810
DOLE96561:0:Tyes--00114911490
DPSY177439:2:Tyes---0---
DRED349161:0:Tyes----00-
DSHI398580:5:Tyes-000000
DSP216389:0:Tyes0909000
DSP255470:0:Tno9090999
DVUL882:1:Tyes00-022952295361
ECAR218491:0:Tyes0634167634167167167
ECOL199310:0:Tno1002999913395937378420
ECOL316407:0:Tno792789706316924875930
ECOL331111:6:Tno882879792351333196600
ECOL362663:0:Tno7067030338431885630
ECOL364106:1:Tno897894807367434957220
ECOL405955:2:Tyes7847817043341314231420
ECOL409438:6:Tyes849846761348932886150
ECOL413997:0:Tno732729645307328975280
ECOL439855:4:Tno038529062666172694
ECOL469008:0:Tno038819702151187713
ECOL481805:0:Tno038419992177220738
ECOL585034:0:Tno778775692329731055360
ECOL585035:0:Tno761758675350232946120
ECOL585055:0:Tno897894811357733866690
ECOL585056:2:Tno867864781351133246380
ECOL585057:0:Tno031098631091715358849
ECOL585397:0:Tno902900792377435746770
ECOL83334:0:Tno1427142413394182393511150
ECOLI:0:Tno808805720324730656020
ECOO157:0:Tno136513621278405038549240
EFER585054:1:Tyes207926602660-237602660
ESP42895:1:Tyes178100-26926360
GMET269799:1:Tyes2460246002460000
GSUL243231:0:Tyes132505000
GURA351605:0:Tyes1629025120249924992512
HARS204773:0:Tyes0000000
HBUT415426:0:Tyes-6616610661661661
HDUC233412:0:Tyes-0-000-
HHAL349124:0:Tyes-07700770770770
HINF281310:0:Tyes-111310961113001096
HINF374930:0:Tyes-606-60600-
HINF71421:0:Tno-103410151034001015
HMAR272569:8:Tyes011011--0
HMUK485914:0:Tyes-0-----
HMUK485914:1:Tyes923-9230--923
HSAL478009:4:Tyes-0-0---
HSOM205914:1:Tyes00-00--
HSOM228400:0:Tno00-000-
HSP64091:2:Tno-0-0---
IHOS453591:0:Tyes00-0---
JSP290400:1:Tyes-0-000-
KPNE272620:2:Tyes139743074307-252804307
KRAD266940:2:Fyes-000000
LCHO395495:0:Tyes0------
LINT363253:3:Tyes00-0---
MAVI243243:0:Tyes-----0-
MCAP243233:0:Tyes-00-000
MKAN190192:0:Tyes0------
MLOT266835:2:Tyes--00000
MMAG342108:0:Tyes167920474070407407407
MMAR267377:0:Tyes0------
MMAR426368:0:Tyes0------
MMAR444158:0:Tyes0------
MMAZ192952:0:Tyes0------
MPET420662:1:Tyes1716000000
MSED399549:0:Tyes--0---0
MSME246196:0:Tyes--0000-
MSP164756:1:Tno--0-000
MSP164757:0:Tno--0-000
MSP189918:2:Tyes--0-000
MSP409:2:Tyes0-00000
MSUC221988:0:Tyes-811-81100-
MTHE187420:0:Tyes0------
MTHE264732:0:Tyes1425916916142500916
NHAM323097:2:Tyes-0-----
NPHA348780:2:Tyes--01191---
NSP35761:1:Tyes-000-00
NSP387092:0:Tyes-087401259-874
OANT439375:4:Tyes----00-
OCAR504832:0:Tyes16051605--160500
PABY272844:0:Tyes0000--0
PACN267747:0:Tyes0000000
PAER178306:0:Tyes0000102510250
PAER208963:0:Tyes0---00-
PAER208964:0:Tno--0-000
PARS340102:0:Tyes005550555555555
PENT384676:0:Tyes0-0-000
PFLU205922:0:Tyes----000
PHOR70601:0:Tyes0------
PISL384616:0:Tyes-090999
PLUM243265:0:Fyes----00-
PLUT319225:0:Tyes-001967--0
PMOB403833:0:Tyes0------
PMUL272843:1:Tyes6980173003823821730
PNAP365044:8:Tyes0------
PPRO298386:1:Tyes0------
PPRO298386:2:Tyes-000---
PPUT160488:0:Tno0---000
PPUT351746:0:Tyes0---000
PPUT76869:0:Tno0---000
PSP117:0:Tyes--0---0
PSTU379731:0:Tyes35133513-3513000
PTHE370438:0:Tyes0---12581258-
RCAS383372:0:Tyes-0-00--
RDEN375451:4:Tyes13840-000-
REUT381666:1:Tyes----000
RFER338969:1:Tyes58--1296129612960
RPAL316056:0:Tyes0------
RPAL316057:0:Tyes-000--0
RPOM246200:1:Tyes-0-000-
RSP101510:0:Fyes-0-0-00
RSP357808:0:Tyes-0-00--
RSPH349102:5:Tyes00-----
RXYL266117:0:Tyes1506416-416150615060
SACI56780:0:Tyes0000226522650
SARE391037:0:Tyes0------
SBAL399599:3:Tyes3222428621664286002166
SBAL402882:1:Tno3064412924714129002471
SBOY300268:1:Tyes0311725092326117117
SDEG203122:0:Tyes-00--00
SDYS300267:1:Tyes199430503052124300
SENT209261:0:Tno0322510973225265226521097
SENT220341:0:Tno1169319903199262426240
SENT295319:0:Tno0315552131552945466521
SENT321314:2:Tno117032940329430566570
SENT454169:2:Tno5932827028272584770
SERY405948:0:Tyes----00-
SFLE198214:0:Tyes798795712315629938410
SFLE373384:0:Tno766763678308225758120
SFUM335543:0:Tyes103332193219568003219
SHAL458817:0:Tyes40201030196196103
SHIGELLA:0:Tno813811729234325098550
SLAC55218:1:Fyes-0-000-
SLOI323850:0:Tyes3753001030013001-0
SMAR399550:0:Tyes000----
SMEL266834:0:Tyes----00-
SONE211586:1:Tyes376390141923901004192
SPEA398579:0:Tno69365335493653003549
SPRO399741:1:Tyes2394101616501016001650
SSED425104:0:Tyes150333303333268025350
SSOL273057:0:Tyes-00---0
SSON300269:1:Tyes555558646317830037150
SSP387093:0:Tyes-09890--989
SSP94122:1:Tyes4053958548395820530548
STHE292459:0:Tyes2572022930308930892293
STOK273063:0:Tyes-00---0
STRO369723:0:Tyes0------
STYP99287:1:Tyes108732870328730475940
SWOL335541:0:Tyes88310031003-001003
TDEN292415:0:Tyes0000000
TDEN326298:0:Tyes-000--0
TKOD69014:0:Tyes0000000
TMAR243274:0:Tyes0------
TPEN368408:1:Tyes09210921120712071207
TPET390874:0:Tno0------
TROS309801:0:Tyes-5710571--0
TROS309801:1:Tyes----00-
TSP28240:0:Tyes0------
TTEN273068:0:Tyes0------
TTHE262724:1:Tyes0000--0
VEIS391735:1:Tyes0000000
VFIS312309:1:Tyes0-0-000
VFIS312309:2:Tyes-0-0---
VPAR223926:1:Tyes56847904794794790
VVUL196600:2:Tyes97209720000
VVUL216895:1:Tno-000000
WSUC273121:0:Tyes7570120907577571209
XAUT78245:1:Tyes0---00-
YENT393305:1:Tyes00-024512451-
YPES187410:5:Tno323500-323532350
YPES214092:3:Tno72800-7287280
YPES349746:2:Tno278000-278027800
YPES360102:3:Tyes21000-2102100
YPES377628:2:Tno299200-299229920
YPES386656:2:Tno029952995-002995
YPSE273123:2:Tno3135-0-313531350
YPSE349747:2:Tno848-0-8488480



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