CANDIDATE ID: 328

CANDIDATE ID: 328

NUMBER OF GENES: 7
AVERAGE SCORE:    9.9925981e-1 (range=[0.0,1.0])
AVERAGE MINIMUM BLAST P-VAL:    1.4285714e-1

Gene List
List of organisms containing most genes from the group
    Phylogenetic tree highlighting these organisms (opens new page)
List of organisms containing very few or no genes from the group
List of organisms enriched for group
List of organisms depleted for group
Phylogenetic profile similarity with known pathways
Pairwise genome context scores
Pairwise Blast scores
Pathway or protein complex matches in target organism
Genome context matrix
    Genes and their orthologs in genome browser BioCyc pages



GENE LIST:

- G8207 (gatR_1) (b2087)
   Products of gene:
     - PD02366 (negative DNA-binding transcriptional regulator of galactitol metabolism)
     - PC00063 (GatR transcriptional repressor)
       Regulatees:
        TU00169 (gatYZABCD)

- G7913 (sgcR) (b4300)
   Products of gene:
     - G7913-MONOMER (Putative sgc cluster transcriptional regulator)

- G7416 (ygbI) (b2735)
   Products of gene:
     - G7416-MONOMER (predicted DNA-binding transcriptional regulator, DEOR-type)

- G6957 (ydjF) (b1770)
   Products of gene:
     - G6957-MONOMER (predicted DNA-binding transcriptional regulator)

- EG11849 (yihW) (b3884)
   Products of gene:
     - EG11849-MONOMER (predicted DNA-binding transcriptional regulator)

- EG10400 (glpR) (b3423)
   Products of gene:
     - PD03576 (GlpR transcriptional repressor)
       Regulatees:
        TU00173 (glpFKX)
        TU00216 (glpTQ)
        TU00031 (glpD)
        TU00030 (glpABC)
     - CPLX0-8057 (GlpR-glycerol)
     - MONOMER-54 (GlpR-glycerol-3-phosphate)

- EG10223 (deoR) (b0840)
   Products of gene:
     - PD01196 (DeoR transcriptional repressor)
       Regulatees:
        TU00449 (tsx)
        TU00129 (nupG)
        TU00018 (deoCABD)
        TU00017 (deoCABD)



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ORGANISMS CONTAINING AT LEAST 6 GENES FROM THE GROUP:

Total number of orgs: 118
Effective number of orgs (counting one per cluster within 468 clusters): 72

Organism list
Homologs in each organism in the list
Features enriched in organism list


Follow (ncbi) link, when present, to find the set of organism features for each organism
Org ID  Org Name  # genes in group found in org  
YPSE349747 ncbi Yersinia pseudotuberculosis IP 317587
YPSE273123 ncbi Yersinia pseudotuberculosis IP 329537
YPES386656 ncbi Yersinia pestis Pestoides F7
YPES377628 ncbi Yersinia pestis Nepal5167
YPES360102 ncbi Yersinia pestis Antiqua7
YPES349746 ncbi Yersinia pestis Angola7
YPES214092 ncbi Yersinia pestis CO927
YPES187410 ncbi Yersinia pestis KIM 107
YENT393305 ncbi Yersinia enterocolitica enterocolitica 80817
VVUL216895 ncbi Vibrio vulnificus CMCP67
VVUL196600 ncbi Vibrio vulnificus YJ0167
VFIS312309 ncbi Vibrio fischeri ES1146
VEIS391735 ncbi Verminephrobacter eiseniae EF01-27
TTEN273068 ncbi Thermoanaerobacter tengcongensis MB47
TSP28240 Thermotoga sp.7
TSP1755 Thermoanaerobacter sp.7
TPSE340099 ncbi Thermoanaerobacter pseudethanolicus ATCC 332237
TLET416591 ncbi Thermotoga lettingae TMO6
STYP99287 ncbi Salmonella enterica enterica serovar Typhimurium str. LT27
STHE292459 ncbi Symbiobacterium thermophilum IAM 148637
SSON300269 ncbi Shigella sonnei Ss0467
SPRO399741 ncbi Serratia proteamaculans 5687
SHIGELLA ncbi Shigella flexneri 2a str. 2457T7
SFLE373384 ncbi Shigella flexneri 5 str. 84017
SFLE198214 ncbi Shigella flexneri 2a str. 3017
SENT454169 ncbi Salmonella enterica enterica serovar Heidelberg str. SL4767
SENT321314 ncbi Salmonella enterica enterica serovar Choleraesuis str. SC-B677
SENT295319 ncbi Salmonella enterica enterica serovar Paratyphi A str. ATCC 91507
SENT220341 ncbi Salmonella enterica enterica serovar Typhi str. CT187
SENT209261 ncbi Salmonella enterica enterica serovar Typhi str. Ty27
SDYS300267 ncbi Shigella dysenteriae Sd1977
SBOY300268 ncbi Shigella boydii Sb2277
SAVE227882 ncbi Streptomyces avermitilis MA-46806
RSPH349101 ncbi Rhodobacter sphaeroides ATCC 170296
RSPH272943 ncbi Rhodobacter sphaeroides 2.4.16
RRUB269796 ncbi Rhodospirillum rubrum ATCC 111706
RPOM246200 ncbi Ruegeria pomeroyi DSS-36
RMET266264 ncbi Ralstonia metallidurans CH346
RLEG216596 ncbi Rhizobium leguminosarum bv. viciae 38416
RDEN375451 ncbi Roseobacter denitrificans OCh 1147
PSYR223283 ncbi Pseudomonas syringae pv. tomato str. DC30007
PSYR205918 ncbi Pseudomonas syringae pv. syringae B728a7
PPRO298386 ncbi Photobacterium profundum SS97
PMUL272843 ncbi Pasteurella multocida multocida Pm707
PLUM243265 ncbi Photorhabdus luminescens laumondii TTO17
PFLU220664 ncbi Pseudomonas fluorescens Pf-57
PFLU216595 ncbi Pseudomonas fluorescens SBW257
PAER208964 ncbi Pseudomonas aeruginosa PAO17
PAER208963 ncbi Pseudomonas aeruginosa UCBPP-PA147
OIHE221109 ncbi Oceanobacillus iheyensis HTE8316
MTHE264732 ncbi Moorella thermoacetica ATCC 390737
MSUC221988 ncbi Mannheimia succiniciproducens MBEL55E7
MSME246196 ncbi Mycobacterium smegmatis MC2 1557
MLOT266835 ncbi Mesorhizobium loti MAFF3030996
MGIL350054 ncbi Mycobacterium gilvum PYR-GCK6
LWEL386043 ncbi Listeria welshimeri serovar 6b str. SLCC53347
LPLA220668 ncbi Lactobacillus plantarum WCFS16
LMON265669 ncbi Listeria monocytogenes 4b F23657
LMON169963 ncbi Listeria monocytogenes EGD-e7
LINN272626 ncbi Listeria innocua Clip112627
KRAD266940 ncbi Kineococcus radiotolerans SRS302167
KPNE272620 ncbi Klebsiella pneumoniae pneumoniae MGH 785787
HSOM228400 ncbi Haemophilus somnus 23367
HSOM205914 ncbi Haemophilus somnus 129PT7
HMOD498761 ncbi Heliobacterium modesticaldum Ice17
HINF71421 ncbi Haemophilus influenzae Rd KW206
ESP42895 Enterobacter sp.7
EFER585054 ncbi Escherichia fergusonii ATCC 354697
ECOO157 ncbi Escherichia coli O157:H7 EDL9337
ECOL83334 Escherichia coli O157:H77
ECOL585397 ncbi Escherichia coli ED1a7
ECOL585057 ncbi Escherichia coli IAI397
ECOL585056 ncbi Escherichia coli UMN0267
ECOL585055 ncbi Escherichia coli 559897
ECOL585035 ncbi Escherichia coli S887
ECOL585034 ncbi Escherichia coli IAI17
ECOL481805 ncbi Escherichia coli ATCC 87397
ECOL469008 ncbi Escherichia coli BL21(DE3)7
ECOL439855 ncbi Escherichia coli SMS-3-57
ECOL413997 ncbi Escherichia coli B str. REL6067
ECOL409438 ncbi Escherichia coli SE117
ECOL405955 ncbi Escherichia coli APEC O17
ECOL364106 ncbi Escherichia coli UTI897
ECOL362663 ncbi Escherichia coli 5367
ECOL331111 ncbi Escherichia coli E24377A7
ECOL316407 ncbi Escherichia coli K-12 substr. W31107
ECOL199310 ncbi Escherichia coli CFT0737
ECAR218491 ncbi Pectobacterium atrosepticum SCRI10436
CSP78 Caulobacter sp.7
CSP501479 Citreicella sp. SE457
CNOV386415 ncbi Clostridium novyi NT6
CBOT536232 ncbi Clostridium botulinum A2 str. Kyoto7
CBOT515621 ncbi Clostridium botulinum Ba4 str. 6577
CBOT498213 ncbi Clostridium botulinum B1 str. Okra7
CBOT441772 ncbi Clostridium botulinum F str. Langeland7
CBOT441770 ncbi Clostridium botulinum A str. ATCC 193977
CBOT36826 Clostridium botulinum A7
BTHA271848 ncbi Burkholderia thailandensis E2646
BSUB ncbi Bacillus subtilis subtilis 1686
BPSE320373 ncbi Burkholderia pseudomallei 6686
BPSE320372 ncbi Burkholderia pseudomallei 1710b6
BPSE272560 ncbi Burkholderia pseudomallei K962436
BMAL320389 ncbi Burkholderia mallei NCTC 102476
BMAL320388 ncbi Burkholderia mallei SAVP16
BMAL243160 ncbi Burkholderia mallei ATCC 233446
BLIC279010 ncbi Bacillus licheniformis ATCC 145806
BHAL272558 ncbi Bacillus halodurans C-1257
BCLA66692 ncbi Bacillus clausii KSM-K167
BAMY326423 ncbi Bacillus amyloliquefaciens FZB427
ASP232721 ncbi Acidovorax sp. JS426
ASAL382245 ncbi Aeromonas salmonicida salmonicida A4496
AMET293826 ncbi Alkaliphilus metalliredigens QYMF6
AHYD196024 Aeromonas hydrophila dhakensis7
ACRY349163 ncbi Acidiphilium cryptum JF-56
ACAU438753 ncbi Azorhizobium caulinodans ORS 5716
ABAC204669 ncbi Candidatus Koribacter versatilis Ellin3457
AAVE397945 ncbi Acidovorax citrulli AAC00-17
AAUR290340 ncbi Arthrobacter aurescens TC17


Names of the homologs of the genes in the group in each of these orgs
  G8207   G7913   G7416   G6957   EG11849   EG10400   EG10223   
YPSE349747 YPSIP31758_0943YPSIP31758_2746YPSIP31758_2145YPSIP31758_3997YPSIP31758_3997YPSIP31758_3997YPSIP31758_2653
YPSE273123 YPTB3075YPTB1272YPTB1936YPTB3779YPTB3779YPTB3779YPTB1353
YPES386656 YPDSF_0683YPDSF_2458YPDSF_1186YPDSF_0048YPDSF_0048YPDSF_0048YPDSF_2374
YPES377628 YPN_3033YPN_2741YPN_2741YPN_3948YPN_3948YPN_3948YPN_2657
YPES360102 YPA_0439YPA_0951YPA_1320YPA_3349YPA_3349YPA_3349YPA_0613
YPES349746 YPANGOLA_A3377YPANGOLA_A1460YPANGOLA_A2128YPANGOLA_A3757YPANGOLA_A3757YPANGOLA_A3757YPANGOLA_A1555
YPES214092 YPO0831YPO1237YPO1938YPO0120YPO0120YPO0120YPO1322
YPES187410 Y3216Y2950Y2373Y3897Y3897Y3897Y2861
YENT393305 YE1093YE1093YE2504YE1093YE3987YE3987YE1474
VVUL216895 VV2_1026VV2_1026VV2_1026VV1_1786VV1_1786VV1_1786VV1_1786
VVUL196600 VVA1520VVA1520VVA1520VV2625VV2625VV2625VV0526
VFIS312309 VF2373VFA0238VFA1006VFA0238VFA0238VFA0238
VEIS391735 VEIS_2323VEIS_3832VEIS_2323VEIS_2323VEIS_2323VEIS_2323VEIS_2323
TTEN273068 TTE1945TTE2588TTE2588TTE2588TTE2588TTE1945TTE1945
TSP28240 TRQ2_0642TRQ2_0642TRQ2_0642TRQ2_0642TRQ2_0642TRQ2_0642TRQ2_0642
TSP1755 TETH514_0575TETH514_0575TETH514_0575TETH514_0575TETH514_1079TETH514_1079TETH514_1079
TPSE340099 TETH39_0150TETH39_0150TETH39_0150TETH39_0150TETH39_0596TETH39_0596TETH39_0596
TLET416591 TLET_0826TLET_1417TLET_0826TLET_0826TLET_1417TLET_1417
STYP99287 STM3262STM1618STM2919STM3523STM4025STM3523STM0864
STHE292459 STH793STH2298STH2298STH793STH2298STH2298STH2298
SSON300269 SSO_2137SSO_2851SSO_2883SSO_3660SSO_4045SSO_3660SSO_0825
SPRO399741 SPRO_3574SPRO_3574SPRO_1493SPRO_3574SPRO_4640SPRO_4640SPRO_1631
SHIGELLA GATRSRLRYGBIS1568YIHWGLPRDEOR
SFLE373384 SFV_2145SFV_2798SFV_2768SFV_1445SFV_3615SFV_3430SFV_0825
SFLE198214 AAN43683.1AAN44221.1AAN44244.1AAN43050.1AAN45391.1AAN44905.1AAN42426.1
SENT454169 SEHA_C3557SEHA_C1796SEHA_C3108SEHA_C3831SEHA_C4349SEHA_C3831SEHA_C0997
SENT321314 SCH_3203SCH_1614SCH_2849SCH_1313SCH_3915SCH_3454SCH_0858
SENT295319 SPA3131SPA1251SPA2776SPA3381SPA3866SPA3381SPA1898
SENT220341 STY3445STY1446STY3044STY4280STY3853STY4280STY0897
SENT209261 T3182T1527T2820T3990T3596T3990T2032
SDYS300267 SDY_2262SDY_2904SDY_2262SDY_1498SDY_3652SDY_3652SDY_0842
SBOY300268 SBO_0911SBO_2811SBO_2785SBO_3411SBO_3885SBO_3411SBO_0736
SAVE227882 SAV3690SAV6358SAV1433SAV3339SAV1447SAV6358
RSPH349101 RSPH17029_2109RSPH17029_2109RSPH17029_2109RSPH17029_2109RSPH17029_2109RSPH17029_3464
RSPH272943 RSP_0457RSP_0457RSP_0457RSP_0457RSP_0457RSP_3731
RRUB269796 RRU_A1265RRU_A2304RRU_A1265RRU_A3010RRU_A1265RRU_A2304
RPOM246200 SPO_0731SPO_0731SPO_0731SPO_0731SPO_0731SPO_0731
RMET266264 RMET_2235RMET_2235RMET_2235RMET_2235RMET_2235RMET_2235
RLEG216596 RL2743PRL120255PRL120160PRL90073PRL90073RL2743
RDEN375451 RD1_2417RD1_2885RD1_2885RD1_2885RD1_2885RD1_2885RD1_2417
PSYR223283 PSPTO_5596PSPTO_0362PSPTO_0362PSPTO_3191PSPTO_4169PSPTO_4169PSPTO_0362
PSYR205918 PSYR_5118PSYR_4490PSYR_4814PSYR_3057PSYR_3906PSYR_3906PSYR_4490
PPRO298386 PBPRB1035PBPRB1035PBPRB1036PBPRB1035PBPRA0159PBPRA0159PBPRA0159
PMUL272843 PM1964PM1344PM1367PM1439PM1439PM1439PM1344
PLUM243265 PLU0832PLU2511PLU2511PLU0195PLU0195PLU0195PLU2511
PFLU220664 PFL_6213PFL_3340PFL_3340PFL_0502PFL_4869PFL_4869PFL_3340
PFLU216595 PFLU6115PFLU3612PFLU2357PFLU1141PFLU1141PFLU1141PFLU2357
PAER208964 PA5550PA3583PA1490PA3583PA3583PA3583PA3583
PAER208963 PA14_73190PA14_17940PA14_45150PA14_17940PA14_17940PA14_17940PA14_17940
OIHE221109 OB2808OB0498OB2808OB0498OB2808OB0840
MTHE264732 MOTH_0608MOTH_0478MOTH_0698MOTH_0011MOTH_0011MOTH_0608MOTH_0478
MSUC221988 MS2316MS0074MS1983MS2186MS2186MS2186MS1983
MSME246196 MSMEG_0087MSMEG_0503MSMEG_0087MSMEG_3115MSMEG_0087MSMEG_0509MSMEG_3115
MLOT266835 MLL0711MLR7274MLL0711MLL0711MLL0711MLL1922
MGIL350054 MFLV_0750MFLV_0750MFLV_3773MFLV_0750MFLV_0750MFLV_3773
LWEL386043 LWE0308LWE2315LWE2289LWE0564LWE0564LWE2315LWE0308
LPLA220668 LP_3549LP_3598LP_2095LP_3549LP_3549LP_3598
LMON265669 LMOF2365_0372LMOF2365_2337LMOF2365_2307LMOF2365_2337LMOF2365_0372LMOF2365_2337LMOF2365_0372
LMON169963 LMO0352LMO2366LMO2337LMO2366LMO0352LMO2366LMO0352
LINN272626 LIN0370LIN2465LIN2431LIN2465LIN0370LIN2465LIN0370
KRAD266940 KRAD_2162KRAD_2155KRAD_3971KRAD_2155KRAD_3971KRAD_1535KRAD_1535
KPNE272620 GKPORF_B2370GKPORF_B0698GKPORF_B0665GKPORF_B3132GKPORF_B3132GKPORF_B3132GKPORF_B5309
HSOM228400 HSM_1036HSM_1400HSM_1902HSM_0585HSM_1756HSM_1756HSM_1214
HSOM205914 HS_1140HS_0922HS_0011HS_1446HS_0515HS_0515HS_0747
HMOD498761 HM1_2674HM1_2674HM1_2674HM1_2674HM1_2674HM1_2674HM1_2674
HINF71421 HI_1009HI_1009HI_0615HI_0619HI_0619HI_1009
ESP42895 ENT638_3571ENT638_3571ENT638_3571ENT638_3832ENT638_3832ENT638_3832ENT638_1331
EFER585054 EFER_4362EFER_4362EFER_4362EFER_3391EFER_3391EFER_3391EFER_0981
ECOO157 GATRAGARAGARZ2808YIHWGLPRDEOR
ECOL83334 ECS2893ECS4009ECS4009ECS2479ECS4807ECS4266ECS0920
ECOL585397 ECED1_3156ECED1_3156ECED1_3188ECED1_1973ECED1_4584ECED1_4083ECED1_0804
ECOL585057 ECIAI39_0927ECIAI39_2893ECIAI39_3630ECIAI39_1283ECIAI39_3116ECIAI39_3903ECIAI39_0819
ECOL585056 ECUMN_2422ECUMN_4899ECUMN_3613ECUMN_2059ECUMN_4411ECUMN_3881ECUMN_1030
ECOL585055 EC55989_2344EC55989_2969EC55989_3002EC55989_1939EC55989_4351EC55989_3830EC55989_0885
ECOL585035 ECS88_2232ECS88_4911ECS88_3002ECS88_1822ECS88_4322ECS88_3812ECS88_0857
ECOL585034 ECIAI1_2164ECIAI1_2799ECIAI1_2830ECIAI1_1833ECIAI1_4084ECIAI1_3566ECIAI1_0879
ECOL481805 ECOLC_1557ECOLC_1005ECOLC_0977ECOLC_1862ECOLC_4141ECOLC_0291ECOLC_2802
ECOL469008 ECBD_1018ECBD_3739ECBD_0989ECBD_1874ECBD_4143ECBD_0319ECBD_2783
ECOL439855 ECSMS35_0974ECSMS35_2830ECSMS35_3428ECSMS35_1421ECSMS35_4269ECSMS35_3702ECSMS35_0867
ECOL413997 ECB_02016ECB_04165ECB_02585ECB_01739ECB_03769ECB_03274ECB_00807
ECOL409438 ECSE_2359ECSE_2955ECSE_2983ECSE_1941ECSE_4167ECSE_3689ECSE_0898
ECOL405955 APECO1_4455APECO1_1385APECO1_3789APECO1_839APECO1_2590APECO1_3044APECO1_1253
ECOL364106 UTI89_C2363UTI89_C0683UTI89_C3101UTI89_C1966UTI89_C4461UTI89_C3923UTI89_C0843
ECOL362663 ECP_2128ECP_0699ECP_2713ECP_1718ECP_4086ECP_3508ECP_0854
ECOL331111 ECE24377A_2378ECE24377A_2991ECE24377A_3032ECE24377A_1994ECE24377A_4407ECE24377A_3898ECE24377A_0911
ECOL316407 ECK2702:JW2676:B2707ECK4289:JW4262:B4300ECK2730:JW2705:B2735ECK1768:JW1759:B1770ECK3877:JW5567:B3884ECK3409:JW3386:B3423ECK0830:JW0824:B0840
ECOL199310 C2615C0765C3296C2174C4824C4200C0925
ECAR218491 ECA3759ECA4325ECA4137ECA4137ECA4137ECA2685
CSP78 CAUL_0312CAUL_0312CAUL_0312CAUL_0312CAUL_0971CAUL_0971CAUL_0312
CSP501479 CSE45_3080CSE45_3080CSE45_3080CSE45_1114CSE45_3080CSE45_3080CSE45_2421
CNOV386415 NT01CX_0637NT01CX_0637NT01CX_0637NT01CX_0637NT01CX_0637NT01CX_0637
CBOT536232 CLM_2411CLM_2411CLM_2411CLM_1858CLM_2411CLM_2411CLM_1858
CBOT515621 CLJ_B2418CLJ_B2418CLJ_B2418CLJ_B1726CLJ_B2418CLJ_B1726CLJ_B1726
CBOT498213 CLD_2367CLD_3297CLD_2367CLD_2939CLD_2367CLD_2939CLD_2939
CBOT441772 CLI_2257CLI_2257CLI_2257CLI_1695CLI_2257CLI_1695CLI_1695
CBOT441770 CLB_2149CLB_1300CLB_2149CLB_1635CLB_2149CLB_2149CLB_1635
CBOT36826 CBO2210CBO1271CBO2210CBO1616CBO2210CBO2210CBO1616
BTHA271848 BTH_I0603BTH_II1182BTH_I0603BTH_I0603BTH_I0603BTH_I0603
BSUB BSU31210BSU31210BSU36300BSU31210BSU36300BSU39770
BPSE320373 BURPS668_0729BURPS668_A1734BURPS668_0729BURPS668_0729BURPS668_0729BURPS668_0729
BPSE320372 BURPS1710B_A0955BURPS1710B_B0269BURPS1710B_A0955BURPS1710B_A0955BURPS1710B_A0955BURPS1710B_A0955
BPSE272560 BPSL0691BPSS1229BPSL0691BPSL0691BPSL0691BPSL0691
BMAL320389 BMA10247_2456BMA10247_A1228BMA10247_2456BMA10247_2456BMA10247_2456BMA10247_2456
BMAL320388 BMASAVP1_A2702BMASAVP1_0061BMASAVP1_A2702BMASAVP1_A2702BMASAVP1_A2702BMASAVP1_A2702
BMAL243160 BMA_0244BMA_A1069BMA_0244BMA_0244BMA_0244BMA_0244
BLIC279010 BL01895BL02485BL02485BL01895BL02485BL00182
BHAL272558 BH1553BH1553BH0801BH1553BH1553BH0801BH0847
BCLA66692 ABC3573ABC3612ABC0658ABC0658ABC3573ABC0421ABC0421
BAMY326423 RBAM_033520RBAM_036790RBAM_012190RBAM_036790RBAM_012190RBAM_033520RBAM_036790
ASP232721 AJS_0383AJS_0383AJS_0383AJS_0383AJS_0383AJS_0383
ASAL382245 ASA_3578ASA_3578ASA_3578ASA_2707ASA_2707ASA_3578
AMET293826 AMET_0825AMET_0825AMET_0825AMET_0825AMET_0825AMET_0825
AHYD196024 AHA_0813AHA_1062AHA_1062AHA_0813AHA_1651AHA_1651AHA_0813
ACRY349163 ACRY_1144ACRY_1144ACRY_2986ACRY_1769ACRY_1769ACRY_2986
ACAU438753 AZC_2738AZC_2090AZC_2738AZC_2090AZC_2738AZC_2738
ABAC204669 ACID345_3908ACID345_0659ACID345_3908ACID345_3908ACID345_0659ACID345_0659ACID345_0656
AAVE397945 AAVE_0603AAVE_0603AAVE_0603AAVE_0603AAVE_0603AAVE_0603AAVE_0603
AAUR290340 AAUR_0296AAUR_0339AAUR_0350AAUR_0296AAUR_3354AAUR_3354AAUR_0350


Organism features enriched in list (features available for 110 out of the 118 orgs in the list)
Feature    Pvalue       Num occurrences in list  Total num occurrences  
Arrangment:Pairs 0.003744231112
Arrangment:Singles 0.008881264286
Disease:Botulism 0.004949845
Disease:Bubonic_plague 0.000040366
Disease:Dysentery 0.000040366
Disease:Gastroenteritis 0.0000758913
Disease:Glanders_and_pneumonia 0.006568633
Disease:Melioidosis 0.006568633
Endospores:No 0.000157324211
GC_Content_Range4:0-40 7.378e-719213
GC_Content_Range4:40-60 0.000010862224
GC_Content_Range7:30-40 3.212e-613166
GC_Content_Range7:50-60 2.526e-740107
Genome_Size_Range5:0-2 1.142e-151155
Genome_Size_Range5:2-4 0.000034820197
Genome_Size_Range5:4-6 3.573e-1773184
Genome_Size_Range5:6-10 0.00464501647
Genome_Size_Range9:1-2 1.979e-121128
Genome_Size_Range9:2-3 0.001655512120
Genome_Size_Range9:4-5 5.904e-114396
Genome_Size_Range9:5-6 0.00010133088
Genome_Size_Range9:6-8 0.00126461538
Gram_Stain:Gram_Neg 0.000014382333
Habitat:Aquatic 0.0002683691
Habitat:Multiple 0.000044251178
Habitat:Terrestrial 0.00453191231
Motility:No 2.419e-79151
Motility:Yes 2.910e-876267
Oxygen_Req:Aerobic 0.002072123185
Oxygen_Req:Facultative 2.606e-965201
Pathogenic_in:Human 0.000966954213
Pathogenic_in:No 0.009565433226
Shape:Coccus 2.104e-6282
Shape:Rod 1.103e-16101347
Shape:Spiral 0.0055006134
Temp._range:Mesophilic 0.0010906100473



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ORGANISMS CONTAINING AT MOST 1 GENES FROM THE GROUP:

Total number of orgs: 304
Effective number of orgs (counting one per cluster within 468 clusters): 259

Organism list
Homologs in each organism in the list
Features enriched in organism list


Follow (ncbi) link, when present, to find the set of organism features for each organism
Org ID  Org Name  # genes in group found in org  
ZMOB264203 ncbi Zymomonas mobilis mobilis ZM40
XORY360094 ncbi Xanthomonas oryzae pv. oryzae PXO99A0
XORY342109 ncbi Xanthomonas oryzae pv. oryzae MAFF 3110180
XORY291331 ncbi Xanthomonas oryzae pv. oryzae KACC103310
XFAS405440 ncbi Xylella fastidiosa M120
XFAS183190 ncbi Xylella fastidiosa Temecula10
XFAS160492 ncbi Xylella fastidiosa 9a5c0
XAUT78245 ncbi Xanthobacter autotrophicus Py20
WSUC273121 ncbi Wolinella succinogenes DSM 17400
WPIP955 Wolbachia pipientis0
WPIP80849 Wolbachia endosymbiont of Brugia malayi0
UURE95667 Ureaplasma urealyticum serovar 130
UURE95664 Ureaplasma urealyticum serovar 100
UPAR505682 ncbi Ureaplasma parvum serovar 3 str. ATCC 278150
UMET351160 ncbi uncultured methanogenic archaeon RC-I0
TWHI218496 ncbi Tropheryma whipplei TW08/270
TWHI203267 ncbi Tropheryma whipplei Twist0
TVOL273116 ncbi Thermoplasma volcanium GSS10
TTHE300852 ncbi Thermus thermophilus HB80
TTHE262724 ncbi Thermus thermophilus HB270
TROS309801 ncbi Thermomicrobium roseum DSM 51590
TPEN368408 ncbi Thermofilum pendens Hrk 50
TPAL243276 ncbi Treponema pallidum pallidum Nichols0
TKOD69014 ncbi Thermococcus kodakarensis KOD10
TERY203124 ncbi Trichodesmium erythraeum IMS1010
TELO197221 ncbi Thermosynechococcus elongatus BP-10
TDEN326298 ncbi Sulfurimonas denitrificans DSM 12510
TDEN292415 ncbi Thiobacillus denitrificans ATCC 252590
TDEN243275 ncbi Treponema denticola ATCC 354050
TCRU317025 ncbi Thiomicrospira crunogena XCL-20
TACI273075 ncbi Thermoplasma acidophilum DSM 17280
SWOL335541 ncbi Syntrophomonas wolfei wolfei Goettingen0
STRO369723 ncbi Salinispora tropica CNB-4401
STOK273063 ncbi Sulfolobus tokodaii 70
STHE322159 ncbi Streptococcus thermophilus LMD-91
SSUI391296 ncbi Streptococcus suis 98HAH331
SSP84588 ncbi Synechococcus sp. WH 81020
SSP64471 ncbi Synechococcus sp. CC93110
SSP387093 ncbi Sulfurovum sp. NBC37-10
SSP321332 ncbi Synechococcus sp. JA-2-3Ba(2-13)0
SSP321327 ncbi Synechococcus sp. JA-3-3Ab0
SSP1148 ncbi Synechocystis sp. PCC 68030
SSP1131 Synechococcus sp. CC96050
SSOL273057 ncbi Sulfolobus solfataricus P20
SRUB309807 ncbi Salinibacter ruber DSM 138550
SMAR399550 ncbi Staphylothermus marinus F10
SFUM335543 ncbi Syntrophobacter fumaroxidans MPOB0
SELO269084 ncbi Synechococcus elongatus PCC 63010
SDEG203122 ncbi Saccharophagus degradans 2-401
SALA317655 ncbi Sphingopyxis alaskensis RB22560
SACI56780 ncbi Syntrophus aciditrophicus SB0
SACI330779 ncbi Sulfolobus acidocaldarius DSM 6390
RXYL266117 ncbi Rubrobacter xylanophilus DSM 99411
RTYP257363 ncbi Rickettsia typhi Wilmington0
RRIC452659 ncbi Rickettsia rickettsii Iowa0
RRIC392021 ncbi Rickettsia rickettsii Sheila Smith0
RPRO272947 ncbi Rickettsia prowazekii Madrid E0
RMAS416276 ncbi Rickettsia massiliae MTU50
RFEL315456 ncbi Rickettsia felis URRWXCal20
RCON272944 ncbi Rickettsia conorii Malish 70
RCAN293613 ncbi Rickettsia canadensis McKiel0
RBEL391896 ncbi Rickettsia bellii OSU 85-3890
RBEL336407 ncbi Rickettsia bellii RML369-C0
RALB246199 Ruminococcus albus 80
RAKA293614 ncbi Rickettsia akari Hartford0
PTOR263820 ncbi Picrophilus torridus DSM 97900
PTHE370438 ncbi Pelotomaculum thermopropionicum SI0
PSP56811 Psychrobacter sp.0
PSP312153 ncbi Polynucleobacter necessarius asymbioticus QLW-P1DMWA-10
PRUM264731 ncbi Prevotella ruminicola 230
PNAP365044 ncbi Polaromonas naphthalenivorans CJ20
PMOB403833 ncbi Petrotoga mobilis SJ950
PMAR93060 ncbi Prochlorococcus marinus MIT 92150
PMAR74547 ncbi Prochlorococcus marinus MIT 93130
PMAR74546 ncbi Prochlorococcus marinus MIT 93120
PMAR59920 ncbi Prochlorococcus marinus NATL2A0
PMAR167555 ncbi Prochlorococcus marinus NATL1A0
PMAR167546 ncbi Prochlorococcus marinus MIT 93010
PMAR167542 ncbi Prochlorococcus marinus MIT 95150
PMAR167540 Prochlorococcus marinus pastoris MED4ax0
PMAR167539 ncbi Prochlorococcus marinus marinus CCMP13750
PMAR146891 ncbi Prochlorococcus marinus AS96010
PLUT319225 ncbi Chlorobium luteolum DSM 2730
PISL384616 ncbi Pyrobaculum islandicum DSM 41840
PINT246198 Prevotella intermedia 170
PHOR70601 ncbi Pyrococcus horikoshii OT30
PGIN242619 ncbi Porphyromonas gingivalis W830
PFUR186497 ncbi Pyrococcus furiosus DSM 36380
PDIS435591 ncbi Parabacteroides distasonis ATCC 85030
PCRY335284 ncbi Psychrobacter cryohalolentis K50
PATL342610 ncbi Pseudoalteromonas atlantica T6c1
PAST100379 Onion yellows phytoplasma0
PARS340102 ncbi Pyrobaculum arsenaticum DSM 135140
PARC259536 ncbi Psychrobacter arcticus 273-40
PAER178306 ncbi Pyrobaculum aerophilum IM20
PABY272844 ncbi Pyrococcus abyssi GE50
OTSU357244 ncbi Orientia tsutsugamushi Boryong0
OCAR504832 ncbi Oligotropha carboxidovorans OM50
NWIN323098 ncbi Nitrobacter winogradskyi Nb-2550
NSP387092 ncbi Nitratiruptor sp. SB155-20
NSP103690 ncbi Nostoc sp. PCC 71200
NSEN222891 ncbi Neorickettsia sennetsu Miyayama0
NPHA348780 ncbi Natronomonas pharaonis DSM 21600
NOCE323261 ncbi Nitrosococcus oceani ATCC 197070
NMUL323848 ncbi Nitrosospira multiformis ATCC 251960
NHAM323097 ncbi Nitrobacter hamburgensis X140
NEUT335283 ncbi Nitrosomonas eutropha C910
NEUR228410 ncbi Nitrosomonas europaea ATCC 197180
NARO279238 ncbi Novosphingobium aromaticivorans DSM 124441
MXAN246197 ncbi Myxococcus xanthus DK 16220
MTUB419947 ncbi Mycobacterium tuberculosis H37Ra0
MTUB336982 ncbi Mycobacterium tuberculosis F110
MTHE349307 ncbi Methanosaeta thermophila PT0
MTHE187420 ncbi Methanothermobacter thermautotrophicus Delta H0
MTBRV ncbi Mycobacterium tuberculosis H37Rv0
MTBCDC ncbi Mycobacterium tuberculosis CDC15510
MSYN262723 ncbi Mycoplasma synoviae 530
MSTA339860 ncbi Methanosphaera stadtmanae DSM 30910
MSED399549 ncbi Metallosphaera sedula DSM 53480
MPUL272635 ncbi Mycoplasma pulmonis UAB CTIP0
MPNE272634 ncbi Mycoplasma pneumoniae M1290
MPET420662 ncbi Methylibium petroleiphilum PM10
MPEN272633 ncbi Mycoplasma penetrans HF-20
MMYC272632 ncbi Mycoplasma mycoides mycoides SC str. PG10
MMOB267748 ncbi Mycoplasma mobile 163K0
MMAZ192952 ncbi Methanosarcina mazei Go10
MMAR444158 ncbi Methanococcus maripaludis C60
MMAR426368 ncbi Methanococcus maripaludis C70
MMAR402880 ncbi Methanococcus maripaludis C50
MMAR394221 ncbi Maricaulis maris MCS100
MMAR368407 ncbi Methanoculleus marisnigri JR10
MMAR267377 ncbi Methanococcus maripaludis S20
MMAG342108 ncbi Magnetospirillum magneticum AMB-10
MLEP272631 ncbi Mycobacterium leprae TN0
MLAB410358 ncbi Methanocorpusculum labreanum Z0
MKAN190192 ncbi Methanopyrus kandleri AV190
MJAN243232 ncbi Methanocaldococcus jannaschii DSM 26610
MHYO295358 ncbi Mycoplasma hyopneumoniae 2320
MHYO262722 ncbi Mycoplasma hyopneumoniae 74480
MHYO262719 ncbi Mycoplasma hyopneumoniae J0
MHUN323259 ncbi Methanospirillum hungatei JF-10
MGEN243273 ncbi Mycoplasma genitalium G370
MFLO265311 ncbi Mesoplasma florum L10
MFLA265072 ncbi Methylobacillus flagellatus KT0
MCAP340047 ncbi Mycoplasma capricolum capricolum ATCC 273430
MCAP243233 ncbi Methylococcus capsulatus Bath0
MBUR259564 ncbi Methanococcoides burtonii DSM 62420
MBOV410289 ncbi Mycobacterium bovis BCG str. Pasteur 1173P20
MBOV233413 ncbi Mycobacterium bovis AF2122/970
MBAR269797 ncbi Methanosarcina barkeri Fusaro0
MAVI243243 ncbi Mycobacterium avium 1040
MART243272 ncbi Mycoplasma arthritidis 158L3-10
MAQU351348 ncbi Marinobacter aquaeolei VT80
MAER449447 ncbi Microcystis aeruginosa NIES-8430
MAEO419665 ncbi Methanococcus aeolicus Nankai-30
MACE188937 ncbi Methanosarcina acetivorans C2A0
MABS561007 ncbi Mycobacterium abscessus ATCC 199770
LREU557436 ncbi Lactobacillus reuteri DSM 200160
LPNE400673 ncbi Legionella pneumophila Corby0
LPNE297246 ncbi Legionella pneumophila Paris0
LPNE297245 ncbi Legionella pneumophila Lens0
LPNE272624 ncbi Legionella pneumophila pneumophila Philadelphia 10
LMES203120 ncbi Leuconostoc mesenteroides mesenteroides ATCC 82930
LJOH257314 ncbi Lactobacillus johnsonii NCC 5330
LINT267671 ncbi Leptospira interrogans serovar Copenhageni str. Fiocruz L1-1300
LINT189518 ncbi Leptospira interrogans serovar Lai str. 566010
LHEL405566 ncbi Lactobacillus helveticus DPC 45710
LGAS324831 ncbi Lactobacillus gasseri ATCC 333231
LDEL390333 ncbi Lactobacillus delbrueckii bulgaricus ATCC 118420
LDEL321956 ncbi Lactobacillus delbrueckii bulgaricus ATCC BAA-3650
LBRE387344 ncbi Lactobacillus brevis ATCC 3670
LBOR355277 ncbi Leptospira borgpetersenii serovar Hardjo-bovis JB1970
LBOR355276 ncbi Leptospira borgpetersenii serovar Hardjo-bovis L5500
LBIF456481 ncbi Leptospira biflexa serovar Patoc strain Patoc 1 (Paris)0
LBIF355278 ncbi Leptospira biflexa serovar Patoc strain Patoc 1 (Ames)0
LACI272621 ncbi Lactobacillus acidophilus NCFM0
JSP375286 ncbi Janthinobacterium sp. Marseille0
IHOS453591 ncbi Ignicoccus hospitalis KIN4/I0
HWAL362976 ncbi Haloquadratum walsbyi DSM 167900
HSP64091 ncbi Halobacterium sp. NRC-10
HSAL478009 ncbi Halobacterium salinarum R10
HPYL85963 ncbi Helicobacter pylori J990
HPYL357544 ncbi Helicobacter pylori HPAG10
HPY ncbi Helicobacter pylori 266950
HNEP81032 Hyphomonas neptunium0
HHEP235279 ncbi Helicobacter hepaticus ATCC 514490
HHAL349124 ncbi Halorhodospira halophila SL10
HBUT415426 ncbi Hyperthermus butylicus DSM 54560
HAUR316274 ncbi Herpetosiphon aurantiacus ATCC 237790
HARS204773 ncbi Herminiimonas arsenicoxydans0
HACI382638 ncbi Helicobacter acinonychis Sheeba0
GVIO251221 ncbi Gloeobacter violaceus PCC 74210
GURA351605 ncbi Geobacter uraniireducens Rf40
GSUL243231 ncbi Geobacter sulfurreducens PCA0
GMET269799 ncbi Geobacter metallireducens GS-150
GFOR411154 ncbi Gramella forsetii KT08030
GBET391165 ncbi Granulibacter bethesdensis CGDNIH10
FTUL458234 ncbi Francisella tularensis holarctica FTNF002-000
FTUL418136 ncbi Francisella tularensis tularensis WY96-34180
FTUL401614 ncbi Francisella novicida U1120
FTUL393115 ncbi Francisella tularensis tularensis FSC1980
FTUL393011 ncbi Francisella tularensis holarctica OSU180
FTUL351581 Francisella tularensis holarctica FSC2000
FSUC59374 ncbi Fibrobacter succinogenes succinogenes S850
FSP106370 ncbi Frankia sp. CcI30
FRANT ncbi Francisella tularensis tularensis SCHU S40
FPHI484022 ncbi Francisella philomiragia philomiragia ATCC 250170
FNOD381764 ncbi Fervidobacterium nodosum Rt17-B10
FMAG334413 ncbi Finegoldia magna ATCC 293280
FJOH376686 ncbi Flavobacterium johnsoniae UW1011
FALN326424 ncbi Frankia alni ACN14a0
ERUM302409 ncbi Ehrlichia ruminantium Gardel0
ERUM254945 ncbi Ehrlichia ruminantium Welgevonden0
ELIT314225 ncbi Erythrobacter litoralis HTCC25940
EFAE226185 ncbi Enterococcus faecalis V5831
ECHA205920 ncbi Ehrlichia chaffeensis Arkansas0
ECAN269484 ncbi Ehrlichia canis Jake0
DVUL882 ncbi Desulfovibrio vulgaris Hildenborough0
DSP255470 ncbi Dehalococcoides sp. CBDB10
DSP216389 ncbi Dehalococcoides sp. BAV10
DRAD243230 ncbi Deinococcus radiodurans R10
DPSY177439 ncbi Desulfotalea psychrophila LSv540
DOLE96561 ncbi Desulfococcus oleovorans Hxd30
DNOD246195 ncbi Dichelobacter nodosus VCS1703A0
DHAF138119 ncbi Desulfitobacterium hafniense Y510
DETH243164 ncbi Dehalococcoides ethenogenes 1950
DARO159087 ncbi Dechloromonas aromatica RCB0
CVES412965 ncbi Candidatus Vesicomyosocius okutanii HA0
CTRA471473 ncbi Chlamydia trachomatis L2b/UCH-1/proctitis0
CTRA471472 ncbi Chlamydia trachomatis 434/Bu0
CTEP194439 ncbi Chlorobium tepidum TLS0
CSUL444179 ncbi Candidatus Sulcia muelleri GWSS0
CRUT413404 ncbi Candidatus Ruthia magnifica Cm (Calyptogena magnifica)0
CPSY167879 ncbi Colwellia psychrerythraea 34H1
CPRO264201 ncbi Candidatus Protochlamydia amoebophila UWE250
CPNE182082 ncbi Chlamydophila pneumoniae TW-1830
CPNE138677 ncbi Chlamydophila pneumoniae J1380
CPNE115713 ncbi Chlamydophila pneumoniae CWL0290
CPNE115711 ncbi Chlamydophila pneumoniae AR390
CPEL335992 ncbi Candidatus Pelagibacter ubique HTCC10620
CMUR243161 ncbi Chlamydia muridarum Nigg0
CMET456442 ncbi Candidatus Methanoregula boonei 6A80
CMAQ397948 ncbi Caldivirga maquilingensis IC-1670
CKOR374847 ncbi Candidatus Korarchaeum cryptofilum OPF80
CKLU431943 ncbi Clostridium kluyveri DSM 5550
CJEJ407148 ncbi Campylobacter jejuni jejuni 811160
CJEJ360109 ncbi Campylobacter jejuni doylei 269.970
CJEJ354242 ncbi Campylobacter jejuni jejuni 81-1760
CJEJ195099 ncbi Campylobacter jejuni RM12210
CJEJ192222 ncbi Campylobacter jejuni jejuni NCTC 111680
CHYD246194 ncbi Carboxydothermus hydrogenoformans Z-29010
CHUT269798 ncbi Cytophaga hutchinsonii ATCC 334060
CHOM360107 ncbi Campylobacter hominis ATCC BAA-3810
CGLU196627 ncbi Corynebacterium glutamicum ATCC 130321
CFET360106 ncbi Campylobacter fetus fetus 82-400
CFEL264202 ncbi Chlamydophila felis Fe/C-560
CDES477974 ncbi Candidatus Desulforudis audaxviator MP104C0
CCUR360105 ncbi Campylobacter curvus 525.920
CCON360104 ncbi Campylobacter concisus 138260
CCHL340177 ncbi Chlorobium chlorochromatii CaD30
CCAV227941 ncbi Chlamydophila caviae GPIC0
CBUR434922 ncbi Coxiella burnetii Dugway 5J108-1110
CBUR360115 ncbi Coxiella burnetii RSA 3310
CBUR227377 ncbi Coxiella burnetii RSA 4930
CBLO291272 ncbi Candidatus Blochmannia pennsylvanicus BPEN0
CBLO203907 ncbi Candidatus Blochmannia floridanus0
CAULO ncbi Caulobacter crescentus CB150
CABO218497 ncbi Chlamydophila abortus S26/30
BTUR314724 ncbi Borrelia turicatae 91E1350
BTRI382640 ncbi Bartonella tribocorum CIP 1054760
BTHE226186 ncbi Bacteroides thetaiotaomicron VPI-54820
BSP107806 ncbi Buchnera aphidicola APS (Acyrthosiphon pisum)0
BQUI283165 ncbi Bartonella quintana Toulouse0
BLON206672 ncbi Bifidobacterium longum NCC27051
BHER314723 ncbi Borrelia hermsii DAH0
BHEN283166 ncbi Bartonella henselae Houston-10
BGAR290434 ncbi Borrelia garinii PBi0
BFRA295405 ncbi Bacteroides fragilis YCH460
BFRA272559 ncbi Bacteroides fragilis NCTC 93430
BCIC186490 Candidatus Baumannia cicadellinicola0
BBUR224326 ncbi Borrelia burgdorferi B310
BBAC360095 ncbi Bartonella bacilliformis KC5830
BBAC264462 ncbi Bdellovibrio bacteriovorus HD1000
BAPH372461 ncbi Buchnera aphidicola Cc (Cinara cedri)0
BAPH198804 ncbi Buchnera aphidicola Sg (Schizaphis graminum)0
BAFZ390236 ncbi Borrelia afzelii PKo0
AYEL322098 ncbi Aster yellows witches-broom phytoplasma AYWB0
AVAR240292 ncbi Anabaena variabilis ATCC 294130
AURANTIMONAS Aurantimonas manganoxydans SI85-9A10
ASP76114 ncbi Aromatoleum aromaticum EbN10
ASP62977 ncbi Acinetobacter sp. ADP10
ASP62928 ncbi Azoarcus sp. BH721
APHA212042 ncbi Anaplasma phagocytophilum HZ0
APER272557 ncbi Aeropyrum pernix K10
AMAR329726 ncbi Acaryochloris marina MBIC110170
AMAR234826 ncbi Anaplasma marginale St. Maries0
ALAI441768 ncbi Acholeplasma laidlawii PG-8A0
AFUL224325 ncbi Archaeoglobus fulgidus DSM 43040
AFER243159 ncbi Acidithiobacillus ferrooxidans ATCC 232700
AEHR187272 ncbi Alkalilimnicola ehrlichii MLHE-10
ADEH290397 ncbi Anaeromyxobacter dehalogenans 2CP-C0
ABUT367737 ncbi Arcobacter butzleri RM40180
ABOR393595 ncbi Alcanivorax borkumensis SK20
AAEO224324 ncbi Aquifex aeolicus VF50


Names of the homologs of the genes in the group in each of these orgs
  G8207   G7913   G7416   G6957   EG11849   EG10400   EG10223   
ZMOB264203
XORY360094
XORY342109
XORY291331
XFAS405440
XFAS183190
XFAS160492
XAUT78245
WSUC273121
WPIP955
WPIP80849
UURE95667
UURE95664
UPAR505682
UMET351160
TWHI218496
TWHI203267
TVOL273116
TTHE300852
TTHE262724
TROS309801
TPEN368408
TPAL243276
TKOD69014
TERY203124
TELO197221
TDEN326298
TDEN292415
TDEN243275
TCRU317025
TACI273075
SWOL335541
STRO369723 STROP_0248
STOK273063
STHE322159 STER_0444
SSUI391296 SSU98_0708
SSP84588
SSP64471
SSP387093
SSP321332
SSP321327
SSP1148
SSP1131
SSOL273057
SRUB309807
SMAR399550
SFUM335543
SELO269084
SDEG203122 SDE_3949
SALA317655
SACI56780
SACI330779
RXYL266117 RXYL_1687
RTYP257363
RRIC452659
RRIC392021
RPRO272947
RMAS416276
RFEL315456
RCON272944
RCAN293613
RBEL391896
RBEL336407
RALB246199
RAKA293614
PTOR263820
PTHE370438
PSP56811
PSP312153
PRUM264731
PNAP365044
PMOB403833
PMAR93060
PMAR74547
PMAR74546
PMAR59920
PMAR167555
PMAR167546
PMAR167542
PMAR167540
PMAR167539
PMAR146891
PLUT319225
PISL384616
PINT246198
PHOR70601
PGIN242619
PFUR186497
PDIS435591
PCRY335284
PATL342610 PATL_3880
PAST100379
PARS340102
PARC259536
PAER178306
PABY272844
OTSU357244
OCAR504832
NWIN323098
NSP387092
NSP103690
NSEN222891
NPHA348780
NOCE323261
NMUL323848
NHAM323097
NEUT335283
NEUR228410
NARO279238 SARO_1048
MXAN246197
MTUB419947
MTUB336982
MTHE349307
MTHE187420
MTBRV
MTBCDC
MSYN262723
MSTA339860
MSED399549
MPUL272635
MPNE272634
MPET420662
MPEN272633
MMYC272632
MMOB267748
MMAZ192952
MMAR444158
MMAR426368
MMAR402880
MMAR394221
MMAR368407
MMAR267377
MMAG342108
MLEP272631
MLAB410358
MKAN190192
MJAN243232
MHYO295358
MHYO262722
MHYO262719
MHUN323259
MGEN243273
MFLO265311
MFLA265072
MCAP340047
MCAP243233
MBUR259564
MBOV410289
MBOV233413
MBAR269797
MAVI243243
MART243272
MAQU351348
MAER449447
MAEO419665
MACE188937
MABS561007
LREU557436
LPNE400673
LPNE297246
LPNE297245
LPNE272624
LMES203120
LJOH257314
LINT267671
LINT189518
LHEL405566
LGAS324831 LGAS_0491
LDEL390333
LDEL321956
LBRE387344
LBOR355277
LBOR355276
LBIF456481
LBIF355278
LACI272621
JSP375286
IHOS453591
HWAL362976
HSP64091
HSAL478009
HPYL85963
HPYL357544
HPY
HNEP81032
HHEP235279
HHAL349124
HBUT415426
HAUR316274
HARS204773
HACI382638
GVIO251221
GURA351605
GSUL243231
GMET269799
GFOR411154
GBET391165
FTUL458234
FTUL418136
FTUL401614
FTUL393115
FTUL393011
FTUL351581
FSUC59374
FSP106370
FRANT
FPHI484022
FNOD381764
FMAG334413
FJOH376686 FJOH_4813
FALN326424
ERUM302409
ERUM254945
ELIT314225
EFAE226185 EF_0719
ECHA205920
ECAN269484
DVUL882
DSP255470
DSP216389
DRAD243230
DPSY177439
DOLE96561
DNOD246195
DHAF138119
DETH243164
DARO159087
CVES412965
CTRA471473
CTRA471472
CTEP194439
CSUL444179
CRUT413404
CPSY167879 CPS_4943
CPRO264201
CPNE182082
CPNE138677
CPNE115713
CPNE115711
CPEL335992
CMUR243161
CMET456442
CMAQ397948
CKOR374847
CKLU431943
CJEJ407148
CJEJ360109
CJEJ354242
CJEJ195099
CJEJ192222
CHYD246194
CHUT269798
CHOM360107
CGLU196627 CG2115
CFET360106
CFEL264202
CDES477974
CCUR360105
CCON360104
CCHL340177
CCAV227941
CBUR434922
CBUR360115
CBUR227377
CBLO291272
CBLO203907
CAULO
CABO218497
BTUR314724
BTRI382640
BTHE226186
BSP107806
BQUI283165
BLON206672 BL1212
BHER314723
BHEN283166
BGAR290434
BFRA295405
BFRA272559
BCIC186490
BBUR224326
BBAC360095
BBAC264462
BAPH372461
BAPH198804
BAFZ390236
AYEL322098
AVAR240292
AURANTIMONAS
ASP76114
ASP62977
ASP62928 AZO3828
APHA212042
APER272557
AMAR329726
AMAR234826
ALAI441768
AFUL224325
AFER243159
AEHR187272
ADEH290397
ABUT367737
ABOR393595
AAEO224324


Organism features enriched in list (features available for 290 out of the 304 orgs in the list)
Feature    Pvalue       Num occurrences in list  Total num occurrences  
Arrangment:Aggregates 0.001750199
Arrangment:Chains 9.499e-82392
Arrangment:Clusters 0.0001168117
Arrangment:Pairs 7.113e-1224112
Disease:Pharyngitis 0.003568588
Disease:Pneumonia 0.0028581112
Disease:bronchitis_and_pneumonitis 0.003568588
Endospores:No 0.0055155118211
Endospores:Yes 6.908e-10653
GC_Content_Range4:0-40 0.0003197125213
GC_Content_Range4:60-100 0.000020151145
GC_Content_Range7:0-30 0.00386713247
GC_Content_Range7:40-50 0.004213670117
GC_Content_Range7:50-60 0.007829043107
GC_Content_Range7:60-70 0.000042047134
Genome_Size_Range5:0-2 1.502e-25131155
Genome_Size_Range5:4-6 5.648e-1844184
Genome_Size_Range5:6-10 5.421e-6947
Genome_Size_Range9:0-1 3.426e-92727
Genome_Size_Range9:1-2 1.016e-16104128
Genome_Size_Range9:4-5 4.482e-62896
Genome_Size_Range9:5-6 2.998e-111688
Genome_Size_Range9:6-8 0.0000319738
Gram_Stain:Gram_Pos 3.191e-1337150
Habitat:Aquatic 0.00002296391
Habitat:Multiple 4.594e-859178
Habitat:Specialized 3.009e-64253
Habitat:Terrestrial 0.0088817931
Motility:Yes 0.0001663112267
Optimal_temp.:- 0.0004024147257
Optimal_temp.:25-30 0.0000312119
Optimal_temp.:30-37 0.0000605118
Oxygen_Req:Anaerobic 0.000029269102
Oxygen_Req:Facultative 7.295e-1950201
Oxygen_Req:Microaerophilic 0.00046281618
Pathogenic_in:Human 2.620e-777213
Pathogenic_in:No 0.0002657132226
Shape:Coccus 0.00041462782
Shape:Irregular_coccus 5.483e-61717
Shape:Rod 3.236e-12132347
Shape:Sphere 0.00002611819
Shape:Spiral 6.743e-103334
Temp._range:Hyperthermophilic 0.00081311923
Temp._range:Mesophilic 1.052e-6213473



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ORGANISMS ENRICHED FOR GROUP:

Total number of orgs: 1
Effective number of orgs (counting one per cluster within 468 clusters): 1

Organism list
Homologs in each organism in the list
Features enriched in organism list


Follow (ncbi) link, when present, to find the set of organism features for each organism
Org ID  Org Name    Pvalue       # genes in tgt genome found in org  # genes in group found in org  
TSP28240 Thermotoga sp. 0.00313748707


Names of the homologs of the genes in the group in each of these orgs
  G8207   G7913   G7416   G6957   EG11849   EG10400   EG10223   
TSP28240 TRQ2_0642TRQ2_0642TRQ2_0642TRQ2_0642TRQ2_0642TRQ2_0642TRQ2_0642


Organism features enriched in list (features available for 0 out of the 1 orgs in the list)
Feature    Pvalue       Num occurrences in list  Total num occurrences  



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ORGANISMS DEPLETED FOR GROUP:




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PHYLOGENETIC PROFILE SIMILARITY WITH KNOWN PATHWAYS:

Pathways or complexes with absolute value of Pearson coefficient with respect to candidate larger than 0.4 are listed below
The candidate is assumed to exist in orgs listed in section List of organisms containing most genes from the group


Pathway or complex  # Orgs containing it  # of those orgs also containing candidate  Pearson Coeff  
GALACTITOLCAT-PWY (galactitol degradation)73600.5881
RHAMCAT-PWY (rhamnose degradation)91570.4612
TREDEGLOW-PWY (trehalose degradation I (low osmolarity))121670.4565
SORBDEG-PWY (sorbitol degradation II)53410.4546
PWY0-1314 (fructose degradation)224920.4232
PWY-5861 (superpathway of demethylmenaquinone-8 biosynthesis)50370.4151
GLUCUROCAT-PWY (β-D-glucuronide and D-glucuronate degradation)208870.4135
XYLCAT-PWY (xylose degradation I)217880.4032
PWY0-1315 (L-lactaldehyde degradation (anaerobic))45340.4032



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PAIRWISE GENOME CONTEXT SCORE MATRIX:

  G7913   G7416   G6957   EG11849   EG10400   EG10223   
G82070.9993040.9995550.999280.999220.9990170.998635
G79130.999440.9994430.9994270.9994180.999355
G74160.9990750.9992580.99930.999218
G69570.9995660.9995770.998934
EG118490.9998880.998668
EG104000.998878
EG10223



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PAIRWISE BLAST SCORES:

  G8207   G7913   G7416   G6957   EG11849   EG10400   EG10223   
G82070.0f0-4.8e-124.3e-11---
G7913-0.0f0-----
G7416--0.0f0--5.0e-24-
G6957---0.0f03.9e-246.9e-27-
EG11849---3.9e-240.0f05.0e-56-
EG10400----1.0e-500.0f0-
EG10223-----2.1e-160.0f0



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PATHWAYS OR PROTEIN COMPLEX MATCHES IN TARGET ORG:

For each case, all genes involved in the pathway or complex are listed. For each gene we list: a tag indicating whether the gene is part of the candidate list or not, the average and the minimum scores of the gene to the candidate list, the gene name, and its product names.



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GENOME CONTEXT INFORMATION:

Each row corresponds to a replicon in an organism, each column to a gene in the candidate. The second column indicates whether the organims was included in the list used to compute the genome context scores or not. Some organisms are not included because they are phylogenetically too similar to others already in the list.
The number in the matrix indicate the position of the homolog of the gene in the replicon. All numbers are relative to the smaller one, which is assigned a position of zero. Two columns with the same number indicate that the two genes matched the same gene in that organism.

Genome browser links for gene clusters

The links below opens a genome browser BioCyc page for each cluster of genes in the target genome. These pages shows the central gene of the cluster in the target genome and its best homolog in the reference genomes, for the genomes that contain homologs for at least 75% of the genes in the group. Only one genome per phylogenetic cluster of organisms is shown, to keep the list smaller.

G8207 (centered at G8207)
G7913 (centered at G7913)
G7416 (centered at G7416)
G6957 (centered at G6957)
EG11849 (centered at EG11849)
EG10400 (centered at EG10400)
EG10223 (centered at EG10223)


ORG:REPLICON:CIRC?\GENE  IN REF LIST  G8207   G7913   G7416   G6957   EG11849   EG10400   EG10223   
209/623225/623222/623205/623234/623262/623211/623
AAUR290340:2:Tyes0435402989298954
AAVE397945:0:Tyes0000000
ABAC204669:0:Tyes3275332753275330
ABAU360910:0:Tyes0-0-00-
ACAU438753:0:Tyes6530-6530653653
ACEL351607:0:Tyes0-0-0-0
ACRY349163:8:Tyes0-018586276271858
AHYD196024:0:Tyes023923908218210
AMET293826:0:Tyes0000-00
ANAE240017:0:Tyes254-0-22412241-
AORE350688:0:Tyes000--0-
APLE416269:0:Tyes840--89600-
APLE434271:0:Tno872--92700-
ASAL382245:5:Tyes835835835-00835
ASP1667:3:Tyes--0-0--
ASP232721:2:Tyes-000000
ASP62928:0:Tyes-----0-
BABO262698:0:Tno-00----
BABO262698:1:Tno----00-
BAMB339670:2:Tno------0
BAMB339670:3:Tno-0--00-
BAMB398577:2:Tno------0
BAMB398577:3:Tno-0--00-
BAMY326423:0:Tyes2131245802458021312458
BANT260799:0:Tno2307----02307
BANT261594:2:Tno2281----02281
BANT568206:2:Tyes0----24470
BANT592021:2:Tno2439----02439
BBRO257310:0:Tyes---000-
BCAN483179:0:Tno-00----
BCAN483179:1:Tno----00-
BCEN331271:2:Tno-0--5255250
BCEN331272:1:Tyes-0----0
BCEN331272:3:Tyes----00-
BCER226900:1:Tyes2335-0--02335
BCER288681:0:Tno328532852241--02241
BCER315749:1:Tyes--0---0
BCER405917:1:Tyes2160----02160
BCER572264:1:Tno347734772403--02403
BCLA66692:0:Tyes31913230231231319100
BHAL272558:0:Tyes7757750775775045
BJAP224911:0:Fyes-0--00-
BLIC279010:0:Tyes02902900-290673
BLON206672:0:Tyes--0----
BMAL243160:0:Tno--0----
BMAL243160:1:Tno-0-0000
BMAL320388:0:Tno--0----
BMAL320388:1:Tno-0-0000
BMAL320389:0:Tyes--0----
BMAL320389:1:Tyes-0-0000
BMEL224914:0:Tno-00----
BMEL224914:1:Tno----00-
BMEL359391:0:Tno-00----
BMEL359391:1:Tno----00-
BOVI236:0:Tyes-00----
BOVI236:1:Tyes----00-
BPAR257311:0:Tno---000-
BPER257313:0:Tyes0--000-
BPET94624:0:Tyes00-000-
BPSE272560:0:Tyes--0----
BPSE272560:1:Tyes-0-0000
BPSE320372:0:Tno--0----
BPSE320372:1:Tno-0-0000
BPSE320373:0:Tno--0----
BPSE320373:1:Tno-0-0000
BPUM315750:0:Tyes-4440444---
BSP36773:0:Tyes-0----0
BSP36773:2:Tyes----00-
BSP376:0:Tyes-0--00-
BSUB:0:Tyes005230-523879
BSUI204722:0:Tyes-00----
BSUI204722:1:Tyes----00-
BSUI470137:0:Tno-00----
BSUI470137:1:Tno----00-
BTHA271848:0:Tno--0----
BTHA271848:1:Tno-0-0000
BTHU281309:1:Tno2231-2231--02231
BTHU412694:1:Tno300330032042--02042
BVIE269482:6:Tyes------0
BVIE269482:7:Tyes-0--00-
BWEI315730:4:Tyes2167-21671508-02167
BXEN266265:0:Tyes-0-----
BXEN266265:1:Tyes----2120471
CACE272562:1:Tyes1301301300--2872
CBEI290402:0:Tyes04023-0--1372
CBOT36826:1:Tno9220922326922922326
CBOT441770:0:Tyes8370837330837837330
CBOT441771:0:Tno-0-329-329329
CBOT441772:1:Tno553553553055300
CBOT498213:1:Tno9240924355924355355
CBOT508765:1:Tyes-563-563--0
CBOT515621:2:Tyes684684684068400
CBOT536232:0:Tno54154154105415410
CDIF272563:1:Tyes00-000-
CDIP257309:0:Tyes0-0-0--
CEFF196164:0:Fyes0---0-1040
CGLU196627:0:Tyes----0--
CJAP155077:0:Tyes0-0----
CJEI306537:0:Tyes0---0--
CMIC31964:2:Tyes000---0
CMIC443906:2:Tyes000---0
CNOV386415:0:Tyes000000-
CPER195102:1:Tyes-05140--514
CPER195103:0:Tno-04780--478
CPER289380:3:Tyes--0153--0
CPHY357809:0:Tyes0-000-0
CPSY167879:0:Tyes0------
CSAL290398:0:Tyes2495--1310131013100
CSP501479:7:Fyes000-00-
CSP501479:8:Fyes---0--1288
CSP78:2:Tyes00006576570
CTET212717:0:Tyes616616-0---
CVIO243365:0:Tyes57524-2400-
DDES207559:0:Tyes0---00-
DGEO319795:1:Tyes-0----0
DRED349161:0:Tyes000-0--
DSHI398580:5:Tyes-0-0000
ECAR218491:0:Tyes-110616911492149214920
ECOL199310:0:Tno180802480137339843369160
ECOL316407:0:Tno187434491902946255230170
ECOL331111:6:Tno1418199520341044336228730
ECOL362663:0:Tno142402013101033762805153
ECOL364106:1:Tno167902414128237613229160
ECOL405955:2:Tyes143902128107233252857141
ECOL409438:6:Tyes1477209021181050333228380
ECOL413997:0:Tno120033851781918298224800
ECOL439855:4:Tno10619142486536329427500
ECOL469008:0:Tno70534116761567382302457
ECOL481805:0:Tno12837236951585387202518
ECOL585034:0:Tno127218971927935315026500
ECOL585035:0:Tno131138852060919333628440
ECOL585055:0:Tno1450206921011049342329140
ECOL585056:2:Tno1398384525811027337528530
ECOL585057:0:Tno10820662812472229830880
ECOL585397:0:Tno2282228223141117367931850
ECOL83334:0:Tno2012315731571586398434230
ECOLI:0:Tno128835311947961311226390
ECOO157:0:Tno2029316931691630400934440
EFAE226185:3:Tyes-0-----
EFER585054:1:Tyes3340334033402400240024000
ESP42895:1:Tyes2253225322532515251525150
FJOH376686:0:Tyes------0
FNUC190304:0:Tyes-1211---0-
FSP1855:0:Tyes--0---0
GKAU235909:1:Tyes-00---0
GOXY290633:5:Tyes-18--18180
GTHE420246:1:Tyes-00---0
HCHE349521:0:Tyes---000-
HDUC233412:0:Tyes---000-
HINF281310:0:Tyes---044-
HINF374930:0:Tyes--40444
HINF71421:0:Tno-392392044392
HMAR272569:8:Tyes0-0000-
HMOD498761:0:Tyes0000000
HMUK485914:1:Tyes0-0000-
HSOM205914:1:Tyes113691701442510510741
HSOM228400:0:Tno4588171325011791179634
ILOI283942:0:Tyes----000
JSP290400:1:Tyes-0-0000
KPNE272620:2:Tyes16773302428242824284540
KRAD266940:2:Fyes07273072730625625
LCAS321967:1:Tyes5480----0
LCHO395495:0:Tyes0-0-00-
LGAS324831:0:Tyes----0--
LINN272626:1:Tno0213920862139021390
LINT363253:3:Tyes0---00-
LLAC272622:5:Tyes0--551551--
LLAC272623:0:Tyes0--508508--
LMON169963:0:Tno0206720192067020670
LMON265669:0:Tyes0194619161946019460
LPLA220668:0:Tyes118212270-118211821227
LSAK314315:0:Tyes--0-00-
LSPH444177:1:Tyes000-283-0
LWEL386043:0:Tyes02007198125625620070
LXYL281090:0:Tyes0-1015----
MEXT419610:0:Tyes----00-
MGIL350054:3:Tyes0-03051003051
MLOT266835:2:Tyes-05207000936
MSME246196:0:Tyes04130300904193009
MSP164756:1:Tno0-0234400-
MSP164757:0:Tno0-0237700-
MSP189918:2:Tyes0-0237000-
MSP266779:3:Tyes-0--00-
MSP400668:0:Tyes-5760-143114310
MSP409:2:Tyes----00-
MSUC221988:0:Tyes2315019732177217721771973
MTHE264732:0:Tyes58745766600587457
MVAN350058:0:Tyes0-025020-2502
NARO279238:0:Tyes--0----
NFAR247156:2:Tyes0-0-00-
NGON242231:0:Tyes----00-
NMEN122586:0:Tno----00-
NMEN122587:0:Tyes----00-
NMEN272831:0:Tno----00-
NMEN374833:0:Tno----00-
NSP35761:1:Tyes0-139-0-507
OANT439375:4:Tyes--725---0
OANT439375:5:Tyes-0--00-
OIHE221109:0:Tyes2356023560-2356359
PACN267747:0:Tyes0-1306---1306
PAER208963:0:Tyes4506022050000
PAER208964:0:Tno4117212002120212021202120
PATL342610:0:Tyes0------
PCAR338963:0:Tyes-00---0
PENT384676:0:Tyes4093--000-
PFLU205922:0:Tyes3621---241424140
PFLU216595:1:Tyes4796237311620001162
PFLU220664:0:Tyes5612279427940429842982794
PHAL326442:0:Tyes----000
PHAL326442:1:Tyes0------
PING357804:0:Tyes---000-
PLUM243265:0:Fyes649236823680002368
PMEN399739:0:Tyes1270--0000
PMUL272843:1:Tyes6200239595950
PPEN278197:0:Tyes-00----
PPRO298386:1:Tyes0010---
PPRO298386:2:Tyes----000
PPUT160488:0:Tno4322--0000
PPUT351746:0:Tyes42010--00-
PPUT76869:0:Tno10920--000
PSP117:0:Tyes000-0--
PSP296591:2:Tyes0-0000-
PSTU379731:0:Tyes2573---000
PSYR205918:0:Tyes20821446177408578571446
PSYR223283:2:Tyes5176002800376537650
RCAS383372:0:Tyes00-0---
RDEN375451:4:Tyes04334334334334330
RETL347834:0:Tyes-0--00-
RETL347834:3:Tyes--0----
RETL347834:5:Tyes------0
REUT264198:3:Tyes--0000-
REUT381666:2:Tyes--0000-
RFER338969:1:Tyes0-113-113113-
RLEG216596:2:Tyes----00-
RLEG216596:5:Tyes--930---
RLEG216596:6:Tyes-0----0
RMET266264:2:Tyes000000-
RPAL258594:0:Tyes-0--00-
RPAL316055:0:Tyes-0--00-
RPAL316056:0:Tyes-33920-3213210
RPAL316057:0:Tyes-0--00-
RPAL316058:0:Tyes-0--00-
RPOM246200:1:Tyes-000000
RRUB269796:1:Tyes010380-173901038
RSAL288705:0:Tyes352-00352-266
RSOL267608:1:Tyes-0-000-
RSP101510:0:Fyes-0-----
RSP101510:3:Fyes0-0--0-
RSP357808:0:Tyes00-0---
RSPH272943:3:Tyes------0
RSPH272943:4:Tyes-00000-
RSPH349101:1:Tno------0
RSPH349101:2:Tno-00000-
RSPH349102:4:Tyes------0
RSPH349102:5:Tyes--0000-
RXYL266117:0:Tyes--0----
SAGA205921:0:Tno009430-1447-
SAGA208435:0:Tno009970-1579-
SAGA211110:0:Tyes0010940-1599-
SARE391037:0:Tyes0-44304430--4430
SAUR158878:1:Tno-000-15540
SAUR158879:1:Tno-000-14590
SAUR196620:0:Tno-000-15200
SAUR273036:0:Tno-000-14420
SAUR282458:0:Tno--00-15370
SAUR282459:0:Tno-000-14870
SAUR359786:1:Tno-000-15410
SAUR359787:1:Tno-000-15000
SAUR367830:3:Tno-000-14050
SAUR418127:0:Tyes-000-15440
SAUR426430:0:Tno-000-14880
SAUR93061:0:Fno-000-17080
SAUR93062:1:Tno-000-13950
SAVE227882:1:Fyes227749970-1922144997
SBAL399599:3:Tyes0-0----
SBAL402882:1:Tno0-0----
SBOY300268:1:Tyes169195919332532298125320
SCO:2:Fyes2200-0-394817885
SDEG203122:0:Tyes0------
SDEN318161:0:Tyes0--0---
SDYS300267:1:Tyes134019431340626263826380
SENT209261:0:Tno158201232235719892357485
SENT220341:0:Tno229248819473069269930690
SENT295319:0:Tno180801466205225122052617
SENT321314:2:Tno23797632020460310726340
SENT454169:2:Tno247278220372733322627330
SEPI176279:1:Tyes-00-140814080
SEPI176280:0:Tno-0--137513750
SERY405948:0:Tyes542013630-2659-0
SFLE198214:0:Tyes128018381861628304225390
SFLE373384:0:Tno124418691840592264624720
SGLO343509:3:Tyes-0--220022002100
SGOR29390:0:Tyes1495-1495---0
SHAE279808:0:Tyes-1405-0--1405
SHAL458817:0:Tyes0-0----
SHIGELLA:0:Tno123217921816651258330680
SLAC55218:1:Fyes---000-
SLOI323850:0:Tyes0-0----
SMED366394:2:Tyes------0
SMED366394:3:Tyes-7480-748748-
SMEL266834:1:Tyes------0
SMEL266834:2:Tyes-8040-804804-
SMUT210007:0:Tyes-0-0--15
SONE211586:1:Tyes0-0----
SPEA398579:0:Tno0-0----
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