CANDIDATE ID: 332

CANDIDATE ID: 332

NUMBER OF GENES: 7
AVERAGE SCORE:    9.9943181e-1 (range=[0.0,1.0])
AVERAGE MINIMUM BLAST P-VAL:    1.0000000e+0

Gene List
List of organisms containing most genes from the group
    Phylogenetic tree highlighting these organisms (opens new page)
List of organisms containing very few or no genes from the group
List of organisms enriched for group
List of organisms depleted for group
Phylogenetic profile similarity with known pathways
Pairwise genome context scores
Pairwise Blast scores
Pathway or protein complex matches in target organism
Genome context matrix
    Genes and their orthologs in genome browser BioCyc pages



GENE LIST:

- EG11059 (usg) (b2319)
   Products of gene:
     - EG11059-MONOMER (predicted semialdehyde dehydrogenase)

- EG10794 (purF) (b2312)
   Products of gene:
     - PRPPAMIDOTRANS-MONOMER (PurF)
     - PRPPAMIDOTRANS-CPLX (amidophosphoribosyl transferase)
       Reactions:
        5-phospho-alpha-D-ribose 1-diphosphate + L-glutamine + H2O  ->  5-phospho-beta-D-ribosyl-amine + diphosphate + L-glutamate
         In pathways
         PWY-841 (PWY-841)
         PWY-6277 (superpathway of 5-aminoimidazole ribonucleotide biosynthesis)
         PRPP-PWY (superpathway of histidine, purine, and pyrimidine biosynthesis)
         DENOVOPURINE2-PWY (purine nucleotides de novo biosynthesis I)
         PWY-6121 (5-aminoimidazole ribonucleotide biosynthesis I)
         PWY-6122 (5-aminoimidazole ribonucleotide biosynthesis II)

- EG10454 (truA) (b2318)
   Products of gene:
     - EG10454-MONOMER (tRNA pseudouridine synthase I)
     - CPLX0-7728 (tRNA pseudouridine synthase I)
       Reactions:
        tRNA uridine  ->  tRNA pseudouridine

- EG10327 (folC) (b2315)
   Products of gene:
     - FOLC-MONOMER (bifunctional folypolyglutamate synthetase / dihydrofolate synthetase)
       Reactions:
        L-glutamate + ATP + methylene-tetrahydropteroyl-[gamma-Glu](n)  ->  phosphate + ADP + methylene-tetrahydropteroyl-[gamma-Glu](n+1)
         In pathways
         PWY-2161 (folate polyglutamylation I)
        L-glutamate + ATP + 10-formyl-tetrahydropteroyl-[gamma-Glu](n)  ->  ADP + phosphate + 10-formyl-tetrahydropteroyl-[gamma-Glu](n+1)
         In pathways
         PWY-2161 (folate polyglutamylation I)
        L-glutamate + ATP + tetrahydropteroyl-[gamma-Glu](n)  ->  phosphate + ADP + tetrahydropteroyl-[gamma-Glu](n+1)
         In pathways
         PWY-2161 (folate polyglutamylation I)
        L-glutamate + ATP + 7,8-dihydropteroate  ->  phosphate + ADP + 7,8-dihydrofolate + H+
         In pathways
         ALL-CHORISMATE-PWY (superpathway of chorismate)
         PWY-3841 (PWY-3841)
         FOLSYN-PWY (tetrahydrofolate biosynthesis)
         1CMET2-PWY (formylTHF biosynthesis I)
         PWY-6548 (PWY-6548)

- EG10218 (dedD) (b2314)
   Products of gene:
     - EG10218-MONOMER (cell division protein DedD)

- EG10217 (accD) (b2316)
   Products of gene:
     - CARBOXYL-TRANSFERASE-BETA-MONOMER (acetyl-CoA carboxyltransferase, β subunit)
     - ACETYL-COA-CARBOXYLTRANSFER-CPLX (acetyl-CoA carboxyltransferase)
       Reactions:
        acetyl-CoA + a carboxylated-biotinylated-BCCP  =  malonyl-CoA + a biotinylated BCCP (dimer)
         In pathways
         PWY0-1264 (biotin-carboxyl carrier protein assembly)
       Regulatees:
        TU00232 (accD)
        TU00230 (accA)
     - ACETYL-COA-CARBOXYLMULTI-CPLX (acetyl-CoA carboxylase)
       Reactions:
        ATP + acetyl-CoA + bicarbonate  ->  malonyl-CoA + phosphate + ADP + 2 H+
         In pathways
         PWY0-881 (superpathway of fatty acid biosynthesis I (E. coli))
         FASYN-INITIAL-PWY (superpathway of fatty acid biosynthesis initiation (E. coli))
         PWY-5156 (PWY-5156)
         PWY-6113 (PWY-6113)
         PWY-6285 (PWY-6285)
         PWY-5744 (PWY-5744)
         PWY-5743 (PWY-5743)
         PWY-5789 (PWY-5789)
         PWY-4381 (fatty acid biosynthesis initiation I)

- EG10169 (cvpA) (b2313)
   Products of gene:
     - EG10169-MONOMER (membrane protein required for colicin V production)



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ORGANISMS CONTAINING AT LEAST 6 GENES FROM THE GROUP:

Total number of orgs: 170
Effective number of orgs (counting one per cluster within 468 clusters): 116

Organism list
Homologs in each organism in the list
Features enriched in organism list


Follow (ncbi) link, when present, to find the set of organism features for each organism
Org ID  Org Name  # genes in group found in org  
ZMOB264203 ncbi Zymomonas mobilis mobilis ZM46
YPSE349747 ncbi Yersinia pseudotuberculosis IP 317587
YPSE273123 ncbi Yersinia pseudotuberculosis IP 329537
YPES386656 ncbi Yersinia pestis Pestoides F7
YPES377628 ncbi Yersinia pestis Nepal5167
YPES360102 ncbi Yersinia pestis Antiqua7
YPES349746 ncbi Yersinia pestis Angola7
YPES214092 ncbi Yersinia pestis CO927
YPES187410 ncbi Yersinia pestis KIM 107
YENT393305 ncbi Yersinia enterocolitica enterocolitica 80817
XORY360094 ncbi Xanthomonas oryzae pv. oryzae PXO99A6
XORY342109 ncbi Xanthomonas oryzae pv. oryzae MAFF 3110186
XORY291331 ncbi Xanthomonas oryzae pv. oryzae KACC103316
XFAS405440 ncbi Xylella fastidiosa M126
XFAS183190 ncbi Xylella fastidiosa Temecula16
XFAS160492 ncbi Xylella fastidiosa 9a5c6
XCAM487884 Xanthomonas campestris pv. paulliniae7
XCAM316273 ncbi Xanthomonas campestris pv. vesicatoria str. 85-106
XCAM314565 ncbi Xanthomonas campestris pv. campestris str. 80047
XCAM190485 ncbi Xanthomonas campestris pv. campestris str. ATCC 339137
XAXO190486 ncbi Xanthomonas axonopodis pv. citri str. 3066
XAUT78245 ncbi Xanthobacter autotrophicus Py26
VVUL216895 ncbi Vibrio vulnificus CMCP67
VVUL196600 ncbi Vibrio vulnificus YJ0167
VPAR223926 ncbi Vibrio parahaemolyticus RIMD 22106337
VFIS312309 ncbi Vibrio fischeri ES1147
VEIS391735 ncbi Verminephrobacter eiseniae EF01-26
VCHO345073 ncbi Vibrio cholerae O3957
VCHO ncbi Vibrio cholerae O1 biovar El Tor str. N169617
STYP99287 ncbi Salmonella enterica enterica serovar Typhimurium str. LT27
SSP94122 ncbi Shewanella sp. ANA-36
SSP644076 Silicibacter sp. TrichCH4B6
SSP292414 ncbi Ruegeria sp. TM10406
SSON300269 ncbi Shigella sonnei Ss0467
SSED425104 ncbi Shewanella sediminis HAW-EB36
SPRO399741 ncbi Serratia proteamaculans 5687
SPEA398579 ncbi Shewanella pealeana ATCC 7003456
SONE211586 ncbi Shewanella oneidensis MR-16
SMEL266834 ncbi Sinorhizobium meliloti 10216
SMED366394 ncbi Sinorhizobium medicae WSM4196
SLOI323850 ncbi Shewanella loihica PV-46
SLAC55218 Ruegeria lacuscaerulensis6
SHIGELLA ncbi Shigella flexneri 2a str. 2457T7
SHAL458817 ncbi Shewanella halifaxensis HAW-EB46
SGLO343509 ncbi Sodalis glossinidius morsitans7
SFLE373384 ncbi Shigella flexneri 5 str. 84017
SFLE198214 ncbi Shigella flexneri 2a str. 3017
SENT454169 ncbi Salmonella enterica enterica serovar Heidelberg str. SL4767
SENT321314 ncbi Salmonella enterica enterica serovar Choleraesuis str. SC-B677
SENT295319 ncbi Salmonella enterica enterica serovar Paratyphi A str. ATCC 91507
SENT220341 ncbi Salmonella enterica enterica serovar Typhi str. CT187
SENT209261 ncbi Salmonella enterica enterica serovar Typhi str. Ty27
SDYS300267 ncbi Shigella dysenteriae Sd1977
SDEN318161 ncbi Shewanella denitrificans OS2176
SBOY300268 ncbi Shigella boydii Sb2277
SBAL402882 ncbi Shewanella baltica OS1856
SBAL399599 ncbi Shewanella baltica OS1956
SALA317655 ncbi Sphingopyxis alaskensis RB22566
RSPH349101 ncbi Rhodobacter sphaeroides ATCC 170296
RSPH272943 ncbi Rhodobacter sphaeroides 2.4.16
RRUB269796 ncbi Rhodospirillum rubrum ATCC 111706
RPOM246200 ncbi Ruegeria pomeroyi DSS-36
RPAL316058 ncbi Rhodopseudomonas palustris HaA26
RPAL316057 ncbi Rhodopseudomonas palustris BisB56
RPAL316056 ncbi Rhodopseudomonas palustris BisB186
RPAL316055 ncbi Rhodopseudomonas palustris BisA536
RPAL258594 ncbi Rhodopseudomonas palustris CGA0096
RLEG216596 ncbi Rhizobium leguminosarum bv. viciae 38416
RFER338969 ncbi Rhodoferax ferrireducens T1186
RETL347834 ncbi Rhizobium etli CFN 426
PSYR223283 ncbi Pseudomonas syringae pv. tomato str. DC30006
PSYR205918 ncbi Pseudomonas syringae pv. syringae B728a6
PSTU379731 ncbi Pseudomonas stutzeri A15016
PPUT76869 ncbi Pseudomonas putida GB-16
PPUT351746 ncbi Pseudomonas putida F16
PPUT160488 ncbi Pseudomonas putida KT24406
PPRO298386 ncbi Photobacterium profundum SS97
PMUL272843 ncbi Pasteurella multocida multocida Pm706
PMEN399739 ncbi Pseudomonas mendocina ymp6
PLUM243265 ncbi Photorhabdus luminescens laumondii TTO17
PING357804 ncbi Psychromonas ingrahamii 376
PHAL326442 ncbi Pseudoalteromonas haloplanktis TAC1257
PFLU220664 ncbi Pseudomonas fluorescens Pf-56
PFLU216595 ncbi Pseudomonas fluorescens SBW256
PFLU205922 ncbi Pseudomonas fluorescens Pf0-16
PENT384676 ncbi Pseudomonas entomophila L486
PCAR338963 ncbi Pelobacter carbinolicus DSM 23806
PATL342610 ncbi Pseudoalteromonas atlantica T6c7
PAER208964 ncbi Pseudomonas aeruginosa PAO16
PAER208963 ncbi Pseudomonas aeruginosa UCBPP-PA146
OCAR504832 ncbi Oligotropha carboxidovorans OM56
OANT439375 ncbi Ochrobactrum anthropi ATCC 491886
NWIN323098 ncbi Nitrobacter winogradskyi Nb-2556
NOCE323261 ncbi Nitrosococcus oceani ATCC 197076
NHAM323097 ncbi Nitrobacter hamburgensis X146
NEUT335283 ncbi Nitrosomonas eutropha C916
NEUR228410 ncbi Nitrosomonas europaea ATCC 197186
MSUC221988 ncbi Mannheimia succiniciproducens MBEL55E6
MSP409 Methylobacterium sp.6
MPET420662 ncbi Methylibium petroleiphilum PM16
MMAR394221 ncbi Maricaulis maris MCS106
MMAG342108 ncbi Magnetospirillum magneticum AMB-16
MFLA265072 ncbi Methylobacillus flagellatus KT6
MEXT419610 ncbi Methylobacterium extorquens PA16
MCAP243233 ncbi Methylococcus capsulatus Bath6
LPNE400673 ncbi Legionella pneumophila Corby6
LPNE297246 ncbi Legionella pneumophila Paris6
LPNE297245 ncbi Legionella pneumophila Lens6
LPNE272624 ncbi Legionella pneumophila pneumophila Philadelphia 16
KPNE272620 ncbi Klebsiella pneumoniae pneumoniae MGH 785787
JSP375286 ncbi Janthinobacterium sp. Marseille6
ILOI283942 ncbi Idiomarina loihiensis L2TR7
HSOM228400 ncbi Haemophilus somnus 23366
HSOM205914 ncbi Haemophilus somnus 129PT6
HINF71421 ncbi Haemophilus influenzae Rd KW206
HINF281310 ncbi Haemophilus influenzae 86-028NP6
HHAL349124 ncbi Halorhodospira halophila SL16
HARS204773 ncbi Herminiimonas arsenicoxydans6
GURA351605 ncbi Geobacter uraniireducens Rf46
GOXY290633 ncbi Gluconobacter oxydans 621H6
GMET269799 ncbi Geobacter metallireducens GS-156
GBET391165 ncbi Granulibacter bethesdensis CGDNIH16
ESP42895 Enterobacter sp.7
EFER585054 ncbi Escherichia fergusonii ATCC 354697
ECOO157 ncbi Escherichia coli O157:H7 EDL9337
ECOL83334 Escherichia coli O157:H77
ECOL585397 ncbi Escherichia coli ED1a7
ECOL585057 ncbi Escherichia coli IAI397
ECOL585056 ncbi Escherichia coli UMN0267
ECOL585055 ncbi Escherichia coli 559897
ECOL585035 ncbi Escherichia coli S887
ECOL585034 ncbi Escherichia coli IAI17
ECOL481805 ncbi Escherichia coli ATCC 87397
ECOL469008 ncbi Escherichia coli BL21(DE3)7
ECOL439855 ncbi Escherichia coli SMS-3-57
ECOL413997 ncbi Escherichia coli B str. REL6067
ECOL409438 ncbi Escherichia coli SE117
ECOL405955 ncbi Escherichia coli APEC O17
ECOL364106 ncbi Escherichia coli UTI897
ECOL362663 ncbi Escherichia coli 5367
ECOL331111 ncbi Escherichia coli E24377A7
ECOL316407 ncbi Escherichia coli K-12 substr. W31107
ECOL199310 ncbi Escherichia coli CFT0737
ECAR218491 ncbi Pectobacterium atrosepticum SCRI10437
DSHI398580 ncbi Dinoroseobacter shibae DFL 126
DARO159087 ncbi Dechloromonas aromatica RCB6
CVIO243365 ncbi Chromobacterium violaceum ATCC 124727
CSP78 Caulobacter sp.6
CSP501479 Citreicella sp. SE456
CPSY167879 ncbi Colwellia psychrerythraea 34H7
CDES477974 ncbi Candidatus Desulforudis audaxviator MP104C6
CBUR434922 ncbi Coxiella burnetii Dugway 5J108-1117
CBUR360115 ncbi Coxiella burnetii RSA 3317
CBUR227377 ncbi Coxiella burnetii RSA 4937
BTRI382640 ncbi Bartonella tribocorum CIP 1054766
BSP376 Bradyrhizobium sp.6
BQUI283165 ncbi Bartonella quintana Toulouse6
BJAP224911 ncbi Bradyrhizobium japonicum USDA 1106
ASP76114 ncbi Aromatoleum aromaticum EbN16
ASP232721 ncbi Acidovorax sp. JS426
ASAL382245 ncbi Aeromonas salmonicida salmonicida A4497
APLE434271 ncbi Actinobacillus pleuropneumoniae serovar 3 str. JL036
APLE416269 ncbi Actinobacillus pleuropneumoniae L206
AHYD196024 Aeromonas hydrophila dhakensis7
AFER243159 ncbi Acidithiobacillus ferrooxidans ATCC 232706
AEHR187272 ncbi Alkalilimnicola ehrlichii MLHE-17
ACRY349163 ncbi Acidiphilium cryptum JF-56
ACAU438753 ncbi Azorhizobium caulinodans ORS 5716
ABOR393595 ncbi Alcanivorax borkumensis SK27
AAVE397945 ncbi Acidovorax citrulli AAC00-16


Names of the homologs of the genes in the group in each of these orgs
  EG11059   EG10794   EG10454   EG10327   EG10218   EG10217   EG10169   
ZMOB264203 ZMO1407ZMO1557ZMO0810ZMO0582ZMO0583ZMO0590
YPSE349747 YPSIP31758_1419YPSIP31758_1426YPSIP31758_1420YPSIP31758_1423YPSIP31758_1424YPSIP31758_1422YPSIP31758_1425
YPSE273123 YPTB2619YPTB2612YPTB2618YPTB2615YPTB2614YPTB2616YPTB2613
YPES386656 YPDSF_1996YPDSF_1989YPDSF_1995YPDSF_1992YPDSF_1991YPDSF_1993YPDSF_1990
YPES377628 YPN_2182YPN_2175YPN_2181YPN_2178YPN_2177YPN_2179YPN_2176
YPES360102 YPA_2079YPA_2072YPA_2078YPA_2075YPA_2074YPA_2076YPA_2073
YPES349746 YPANGOLA_A0362YPANGOLA_A0355YPANGOLA_A0361YPANGOLA_A0358YPANGOLA_A0357YPANGOLA_A0359YPANGOLA_A0356
YPES214092 YPO2765YPO2772YPO2766YPO2769YPO2770YPO2768YPO2771
YPES187410 Y1598Y1605Y1599Y1602Y1603Y1601Y1604
YENT393305 YE1308YE1315YE1309YE1312YE1313YE1311YE1314
XORY360094 XOOORF_3618XOOORF_4353XOOORF_3613XOOORF_4356XOOORF_3607XOOORF_4354
XORY342109 XOO3087XOO3472XOO3083XOO3475XOO3078XOO3473
XORY291331 XOO3259XOO3675XOO3255XOO3679XOO3250XOO3677
XFAS405440 XFASM12_0724XFASM12_1023XFASM12_0726XFASM12_1026XFASM12_0809XFASM12_1024
XFAS183190 PD_0608PD_0851PD_0610PD_0854PD_0685PD_0852
XFAS160492 XF1371XF1949XF1373XF1946XF1467XF1948
XCAM487884 XCC-B100_1613XCC-B100_3399XCC-B100_1616XCC-B100_3402XCC-B100_3401XCC-B100_1622XCC-B100_3400
XCAM316273 XCAORF_2883XCAORF_1149XCAORF_2879XCAORF_1146XCAORF_2871XCAORF_1148
XCAM314565 XC_1569XC_3282XC_1572XC_3285XC_3284XC_1578XC_3283
XCAM190485 XCC2549XCC0953XCC2546XCC0950XCC0951XCC2540XCC0952
XAXO190486 XAC2723XAC1032XAC2720XAC1029XAC2715XAC1031
XAUT78245 XAUT_2214XAUT_2400XAUT_3303XAUT_1697XAUT_1696XAUT_2401
VVUL216895 VV1_1989VV1_1997VV1_1992VV1_1994VV1_1995VV1_1993VV1_1996
VVUL196600 VV2427VV2419VV2425VV2422VV2421VV2424VV2420
VPAR223926 VP2192VP2185VP2190VP2188VP2187VP2189VP2186
VFIS312309 VF1698VF1691VF1696VF1694VF1693VF1695VF1692
VEIS391735 VEIS_3371VEIS_4870VEIS_3374VEIS_3373VEIS_4866VEIS_3372
VCHO345073 VC0395_A1691VC0395_A0525VC0395_A0520VC0395_A0522VC0395_A0523VC0395_A0521VC0395_A0524
VCHO VC2107VC1004VC0999VC1001VC1002VC1000VC1003
STYP99287 STM2369STM2362STM2368STM2365STM2364STM2366STM2363
SSP94122 SHEWANA3_1477SHEWANA3_1483SHEWANA3_1479SHEWANA3_1480SHEWANA3_1481SHEWANA3_1482
SSP644076 SCH4B_0950SCH4B_1986SCH4B_2549SCH4B_2876SCH4B_2877SCH4B_1988
SSP292414 TM1040_3459TM1040_1787TM1040_2384TM1040_2675TM1040_2676TM1040_1785
SSON300269 SSO_2377SSO_2370SSO_2376SSO_2373SSO_2372SSO_2374SSO_2371
SSED425104 SSED_1650SSED_1656SSED_1652SSED_1653SSED_1654SSED_1655
SPRO399741 SPRO_3335SPRO_3328SPRO_3334SPRO_3331SPRO_3330SPRO_3332SPRO_3329
SPEA398579 SPEA_1613SPEA_1621SPEA_1617SPEA_1618SPEA_1619SPEA_1620
SONE211586 SO_3070SO_3064SO_3068SO_3067SO_3066SO_3065
SMEL266834 SMC04410SMC00554SMC01099SMC02763SMC02764SMC00555
SMED366394 SMED_3182SMED_0727SMED_0056SMED_3240SMED_3239SMED_0728
SLOI323850 SHEW_2308SHEW_2302SHEW_2306SHEW_2305SHEW_2304SHEW_2303
SLAC55218 SL1157_1166SL1157_2666SL1157_0231SL1157_A0071SL1157_A0072SL1157_2669
SHIGELLA USGPURFTRUAFOLCDEDDACCDCVPA
SHAL458817 SHAL_2643SHAL_2637SHAL_2641SHAL_2640SHAL_2639SHAL_2638
SGLO343509 SG1620SG1613SG1619SG1616SG1615SG1617SG1614
SFLE373384 SFV_2388SFV_2381SFV_2387SFV_2384SFV_2383SFV_2385SFV_2382
SFLE198214 AAN43908.1AAN43901.1AAN43907.1AAN43904.1AAN43903.1AAN43905.1AAN43902.1
SENT454169 SEHA_C2611SEHA_C2604SEHA_C2610SEHA_C2607SEHA_C2606SEHA_C2608SEHA_C2605
SENT321314 SCH_2371SCH_2364SCH_2370SCH_2367SCH_2366SCH_2368SCH_2365
SENT295319 SPA0495SPA0502SPA0496SPA0499SPA0500SPA0498SPA0501
SENT220341 STY2600STY2592STY2599STY2596STY2595STY2597STY2593
SENT209261 T0495T0502T0496T0499T0500T0498T0501
SDYS300267 SDY_2518SDY_2511SDY_2517SDY_2514SDY_2513SDY_2515SDY_2512
SDEN318161 SDEN_1484SDEN_1490SDEN_1486SDEN_1487SDEN_1488SDEN_1489
SBOY300268 SBO_2356SBO_2349SBO_2355SBO_2352SBO_2351SBO_2353SBO_2350
SBAL402882 SHEW185_2761SHEW185_2755SHEW185_2759SHEW185_2758SHEW185_2757SHEW185_2756
SBAL399599 SBAL195_2838SBAL195_2832SBAL195_2836SBAL195_2835SBAL195_2834SBAL195_2833
SALA317655 SALA_2718SALA_1541SALA_0248SALA_1061SALA_1062SALA_1805
RSPH349101 RSPH17029_0044RSPH17029_1117RSPH17029_2224RSPH17029_2589RSPH17029_2588RSPH17029_1118
RSPH272943 RSP_1376RSP_2454RSP_0571RSP_0930RSP_0929RSP_2455
RRUB269796 RRU_A1196RRU_A0404RRU_A3352RRU_A3431RRU_A3430RRU_A0405
RPOM246200 SPO_3712SPO_2677SPO_3143SPO_3818SPO_3817SPO_2675
RPAL316058 RPB_0338RPB_2452RPB_0675RPB_0632RPB_0633RPB_2453
RPAL316057 RPD_0493RPD_2997RPD_0079RPD_0200RPD_0199RPD_2996
RPAL316056 RPC_0237RPC_2282RPC_0807RPC_0389RPC_0390RPC_2283
RPAL316055 RPE_0484RPE_3340RPE_0654RPE_0457RPE_0456RPE_3339
RPAL258594 RPA0230RPA3091RPA0623RPA0072RPA0071RPA3090
RLEG216596 RL4715RL1546RL0434RL0024RL0023RL1547
RFER338969 RFER_2683RFER_1790RFER_2686RFER_2685RFER_1786RFER_2684
RETL347834 RHE_CH04100RHE_CH01428RHE_CH00415RHE_CH00024RHE_CH00023RHE_CH01429
PSYR223283 PSPTO_3819PSPTO_3811PSPTO_3817PSPTO_3814PSPTO_3815PSPTO_3812
PSYR205918 PSYR_1660PSYR_1668PSYR_1662PSYR_1665PSYR_1664PSYR_1667
PSTU379731 PST_1776PST_1784PST_1778PST_1781PST_1780PST_1783
PPUT76869 PPUTGB1_1526PPUTGB1_1534PPUTGB1_1528PPUTGB1_1531PPUTGB1_1530PPUTGB1_1533
PPUT351746 PPUT_3769PPUT_3761PPUT_3767PPUT_3764PPUT_3765PPUT_3762
PPUT160488 PP_1992PP_2000PP_1994PP_1997PP_1996PP_1999
PPRO298386 PBPRA2655PBPRA2648PBPRA2653PBPRA2651PBPRA2650PBPRA2652PBPRA2649
PMUL272843 PM0486PM0701PM0637PM0635PM0636PM0702
PMEN399739 PMEN_2719PMEN_2711PMEN_2717PMEN_2714PMEN_2715PMEN_2712
PLUM243265 PLU3174PLU3167PLU3173PLU3170PLU3169PLU3171PLU3168
PING357804 PING_1993PING_1965PING_1969PING_1968PING_1967PING_1966
PHAL326442 PSHAA2078PSHAA2070PSHAA2075PSHAA2073PSHAA2072PSHAA2074PSHAA2071
PFLU220664 PFL_2068PFL_2077PFL_2071PFL_2074PFL_2073PFL_2076
PFLU216595 PFLU4191PFLU4183PFLU4189PFLU4186PFLU4187PFLU4184
PFLU205922 PFL_1894PFL_1902PFL_1896PFL_1899PFL_1898PFL_1901
PENT384676 PSEEN1687PSEEN1695PSEEN1689PSEEN1692PSEEN1691PSEEN1694
PCAR338963 PCAR_1903PCAR_1326PCAR_1901PCAR_0738PCAR_0737PCAR_2681
PATL342610 PATL_3363PATL_1609PATL_1604PATL_1606PATL_1607PATL_1605PATL_1608
PAER208964 PA3116PA3108PA3114PA3111PA3112PA3109
PAER208963 PA14_23810PA14_23920PA14_23840PA14_23880PA14_23860PA14_23900
OCAR504832 OCAR_4279OCAR_6382OCAR_7538OCAR_4480OCAR_4479OCAR_6381
OANT439375 OANT_3290OANT_0560OANT_1346OANT_0814OANT_0813OANT_0561
NWIN323098 NWI_2793NWI_2017NWI_3066NWI_0052NWI_0053NWI_2016
NOCE323261 NOC_1016NOC_1671NOC_1018NOC_1023NOC_1022NOC_1672
NHAM323097 NHAM_3593NHAM_2293NHAM_3695NHAM_0060NHAM_0061NHAM_2292
NEUT335283 NEUT_1158NEUT_1150NEUT_1155NEUT_1156NEUT_1154NEUT_1157
NEUR228410 NE0699NE0691NE0696NE0697NE0695NE0698
MSUC221988 MS1101MS1003MS1175MS1173MS1174MS1002
MSP409 M446_3185M446_2599M446_4238M446_0475M446_0476M446_2598
MPET420662 MPE_A2151MPE_A2159MPE_A3265MPE_A2153MPE_A2155MPE_A2152
MMAR394221 MMAR10_2876MMAR10_1205MMAR10_0447MMAR10_0088MMAR10_0089MMAR10_1206
MMAG342108 AMB0587AMB2089AMB0241AMB4014AMB4012AMB2090
MFLA265072 MFLA_1692MFLA_1700MFLA_1695MFLA_1694MFLA_1696MFLA_1693
MEXT419610 MEXT_2702MEXT_3932MEXT_1634MEXT_4444MEXT_4445MEXT_3933
MCAP243233 MCA_2062MCA_2489MCA_2497MCA_2492MCA_2493MCA_2490
LPNE400673 LPC_1767LPC_1105LPC_0727LPC_0758LPC_0757LPC_0760
LPNE297246 LPP2250LPP1646LPP1266LPP1296LPP1295LPP1298
LPNE297245 LPL2221LPL1639LPL1265LPL1295LPL1294LPL1297
LPNE272624 LPG2302LPG1674LPG1302LPG1342LPG1341LPG1344
KPNE272620 GKPORF_B2019GKPORF_B2012GKPORF_B2018GKPORF_B2015GKPORF_B2014GKPORF_B2016GKPORF_B2013
JSP375286 MMA_2158MMA_2166MMA_2161MMA_2160MMA_2162MMA_2159
ILOI283942 IL1019IL1012IL1017IL1015IL1014IL1016IL1013
HSOM228400 HSM_1361HSM_1394HSM_0804HSM_1359HSM_1360HSM_1395
HSOM205914 HS_0882HS_0916HS_1258HS_0880HS_0881HS_0917
HINF71421 HI_1433HI_1207HI_1644HI_1261HI_1260HI_1206
HINF281310 NTHI1700NTHI1378NTHI1395NTHI1903NTHI1904NTHI1377
HHAL349124 HHAL_1808HHAL_1798HHAL_1806HHAL_1801HHAL_1802HHAL_1799
HARS204773 HEAR1229HEAR1221HEAR1226HEAR1227HEAR1225HEAR1228
GURA351605 GURA_1047GURA_2068GURA_1048GURA_3277GURA_3279GURA_4049
GOXY290633 GOX0878GOX1640GOX1834GOX1205GOX1204GOX1639
GMET269799 GMET_0604GMET_1939GMET_0605GMET_2475GMET_2476GMET_0393
GBET391165 GBCGDNIH1_2081GBCGDNIH1_0470GBCGDNIH1_0690GBCGDNIH1_2012GBCGDNIH1_2013GBCGDNIH1_0471
ESP42895 ENT638_2868ENT638_2861ENT638_2867ENT638_2864ENT638_2863ENT638_2865ENT638_2862
EFER585054 EFER_0844EFER_0851EFER_0845EFER_0848EFER_0849EFER_0847EFER_0850
ECOO157 USGPURFTRUAFOLCDEDDACCDCVPA
ECOL83334 ECS3203ECS3196ECS3202ECS3199ECS3198ECS3200ECS3197
ECOL585397 ECED1_2783ECED1_2776ECED1_2782ECED1_2779ECED1_2778ECED1_2780ECED1_2777
ECOL585057 ECIAI39_2468ECIAI39_2461ECIAI39_2467ECIAI39_2464ECIAI39_2463ECIAI39_2465ECIAI39_2462
ECOL585056 ECUMN_2659ECUMN_2652ECUMN_2658ECUMN_2655ECUMN_2654ECUMN_2656ECUMN_2653
ECOL585055 EC55989_2563EC55989_2556EC55989_2562EC55989_2559EC55989_2558EC55989_2560EC55989_2557
ECOL585035 ECS88_2467ECS88_2459ECS88_2466ECS88_2462ECS88_2461ECS88_2463ECS88_2460
ECOL585034 ECIAI1_2396ECIAI1_2389ECIAI1_2395ECIAI1_2392ECIAI1_2391ECIAI1_2393ECIAI1_2390
ECOL481805 ECOLC_1333ECOLC_1340ECOLC_1334ECOLC_1337ECOLC_1338ECOLC_1336ECOLC_1339
ECOL469008 ECBD_1340ECBD_1347ECBD_1341ECBD_1344ECBD_1345ECBD_1343ECBD_1346
ECOL439855 ECSMS35_2475ECSMS35_2468ECSMS35_2474ECSMS35_2471ECSMS35_2470ECSMS35_2472ECSMS35_2469
ECOL413997 ECB_02244ECB_02237ECB_02243ECB_02240ECB_02239ECB_02241ECB_02238
ECOL409438 ECSE_2628ECSE_2621ECSE_2627ECSE_2624ECSE_2623ECSE_2625ECSE_2622
ECOL405955 APECO1_4245APECO1_4252APECO1_4246APECO1_4249APECO1_4250APECO1_4248APECO1_4251
ECOL364106 UTI89_C2604UTI89_C2596UTI89_C2603UTI89_C2600UTI89_C2599UTI89_C2601UTI89_C2597
ECOL362663 ECP_2358ECP_2351ECP_2357ECP_2354ECP_2353ECP_2355ECP_2352
ECOL331111 ECE24377A_2613ECE24377A_2606ECE24377A_2612ECE24377A_2609ECE24377A_2608ECE24377A_2610ECE24377A_2607
ECOL316407 ECK2313:JW2316:B2319ECK2306:JW2309:B2312ECK2312:JW2315:B2318ECK2309:JW2312:B2315ECK2308:JW5378:B2314ECK2310:JW2313:B2316ECK2307:JW2310:B2313
ECOL199310 C2864C2856C2863C2860C2859C2861C2857
ECAR218491 ECA3059ECA3052ECA3058ECA3055ECA3054ECA3056ECA3053
DSHI398580 DSHI_3240DSHI_2132DSHI_1938DSHI_0132DSHI_0131DSHI_2130
DARO159087 DARO_0876DARO_0868DARO_0873DARO_0874DARO_0872DARO_0875
CVIO243365 CV_2767CV_2515CV_2764CV_2518CV_2517CV_2760CV_2516
CSP78 CAUL_4618CAUL_2502CAUL_4567CAUL_4979CAUL_4978CAUL_2503
CSP501479 CSE45_3113CSE45_1751CSE45_0598CSE45_3139CSE45_3140CSE45_1754
CPSY167879 CPS_3805CPS_3798CPS_3803CPS_3801CPS_3800CPS_3802CPS_3799
CDES477974 DAUD_0945DAUD_1632DAUD_0255DAUD_1472DAUD_1053DAUD_2220
CBUR434922 COXBU7E912_0940COXBU7E912_0961COXBU7E912_0956COXBU7E912_0958COXBU7E912_0959COXBU7E912_0957COXBU7E912_0960
CBUR360115 COXBURSA331_A1074COXBURSA331_A1050COXBURSA331_A1055COXBURSA331_A1053COXBURSA331_A1052COXBURSA331_A1054COXBURSA331_A1051
CBUR227377 CBU_0875CBU_0897CBU_0892CBU_0894CBU_0895CBU_0893CBU_0896
BTRI382640 BT_1768BT_0806BT_0077BT_0034BT_0035BT_0807
BSP376 BRADO0358BRADO3280BRADO0772BRADO0088BRADO0089BRADO3281
BQUI283165 BQ10170BQ04430BQ00670BQ00310BQ00320BQ04440
BJAP224911 BLL0501BLL4060BLL8107BLR0748BLR0747BLL4061
ASP76114 EBA4783EBA4770EBA4777EBA4781EBA4778EBB164
ASP232721 AJS_2736AJS_3237AJS_2739AJS_2738AJS_3241AJS_2737
ASAL382245 ASA_2533ASA_2433ASA_2531ASA_2529ASA_2528ASA_2530ASA_2434
APLE434271 APJL_1235APJL_0450APJL_0914APJL_0627APJL_0626APJL_0449
APLE416269 APL_1222APL_0425APL_0902APL_0632APL_0631APL_0424
AHYD196024 AHA_2682AHA_1870AHA_2680AHA_2678AHA_2677AHA_2679AHA_1869
AFER243159 AFE_1021AFE_1031AFE_1024AFE_1029AFE_1028AFE_1030
AEHR187272 MLG_1231MLG_1242MLG_1234MLG_1239MLG_1240MLG_1238MLG_1241
ACRY349163 ACRY_1717ACRY_0405ACRY_0411ACRY_0844ACRY_0845ACRY_0404
ACAU438753 AZC_3731AZC_0535AZC_0796AZC_1025AZC_1024AZC_0534
ABOR393595 ABO_1465ABO_1455ABO_1463ABO_1458ABO_1457ABO_1459ABO_1456
AAVE397945 AAVE_1863AAVE_1217AAVE_1860AAVE_1861AAVE_1213AAVE_1862


Organism features enriched in list (features available for 160 out of the 170 orgs in the list)
Feature    Pvalue       Num occurrences in list  Total num occurrences  
Arrangment:Chains 0.00002171092
Arrangment:Singles 0.003205892286
Disease:Bubonic_plague 0.000398866
Disease:Dysentery 0.000398866
Disease:Gastroenteritis 0.00022581013
Disease:Legionnaire's_disease 0.005519244
Endospores:No 1.458e-732211
GC_Content_Range4:0-40 3.493e-2212213
GC_Content_Range4:40-60 1.504e-993224
GC_Content_Range4:60-100 0.000494955145
GC_Content_Range7:30-40 6.880e-1412166
GC_Content_Range7:50-60 2.811e-955107
GC_Content_Range7:60-70 0.000039655134
Genome_Size_Range5:0-2 1.590e-213155
Genome_Size_Range5:2-4 0.000906439197
Genome_Size_Range5:4-6 1.146e-24103184
Genome_Size_Range9:1-2 1.254e-163128
Genome_Size_Range9:2-3 0.006466623120
Genome_Size_Range9:4-5 1.726e-105396
Genome_Size_Range9:5-6 1.672e-105088
Gram_Stain:Gram_Neg 1.455e-32150333
Gram_Stain:Gram_Pos 1.140e-231150
Habitat:Multiple 0.000027469178
Habitat:Specialized 0.0006161553
Motility:No 4.265e-176151
Motility:Yes 1.673e-14114267
Optimal_temp.:25-30 9.466e-121919
Oxygen_Req:Anaerobic 2.211e-96102
Oxygen_Req:Facultative 4.007e-1291201
Pathogenic_in:Plant 0.00128641015
Shape:Coccus 2.388e-10282
Shape:Rod 6.775e-16136347
Shape:Spiral 0.0050328334
Temp._range:Mesophilic 0.0047014140473
Temp._range:Thermophilic 0.0001276135



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ORGANISMS CONTAINING AT MOST 1 GENES FROM THE GROUP:

Total number of orgs: 112
Effective number of orgs (counting one per cluster within 468 clusters): 82

Organism list
Homologs in each organism in the list
Features enriched in organism list


Follow (ncbi) link, when present, to find the set of organism features for each organism
Org ID  Org Name  # genes in group found in org  
UURE95667 Ureaplasma urealyticum serovar 130
UURE95664 Ureaplasma urealyticum serovar 100
UPAR505682 ncbi Ureaplasma parvum serovar 3 str. ATCC 278150
UMET351160 ncbi uncultured methanogenic archaeon RC-I1
TWHI218496 ncbi Tropheryma whipplei TW08/271
TWHI203267 ncbi Tropheryma whipplei Twist1
TPEN368408 ncbi Thermofilum pendens Hrk 50
TPAL243276 ncbi Treponema pallidum pallidum Nichols0
TKOD69014 ncbi Thermococcus kodakarensis KOD10
TDEN243275 ncbi Treponema denticola ATCC 354051
STOK273063 ncbi Sulfolobus tokodaii 70
SSOL273057 ncbi Sulfolobus solfataricus P21
SPYO370553 ncbi Streptococcus pyogenes MGAS20960
SPYO370551 ncbi Streptococcus pyogenes MGAS94290
SPYO319701 ncbi Streptococcus pyogenes MGAS61801
SPYO293653 ncbi Streptococcus pyogenes MGAS50051
SPYO286636 ncbi Streptococcus pyogenes MGAS103941
SPYO198466 ncbi Streptococcus pyogenes MGAS3151
SPYO193567 ncbi Streptococcus pyogenes SSI-11
SPYO160490 ncbi Streptococcus pyogenes M1 GAS0
SMAR399550 ncbi Staphylothermus marinus F10
SEPI176279 ncbi Staphylococcus epidermidis RP62A1
SAUR93062 ncbi Staphylococcus aureus aureus COL1
SAUR93061 ncbi Staphylococcus aureus aureus NCTC 83251
SAUR426430 ncbi Staphylococcus aureus aureus Newman1
SAUR418127 ncbi Staphylococcus aureus aureus Mu31
SAUR367830 Staphylococcus aureus aureus USA3001
SAUR359787 ncbi Staphylococcus aureus aureus JH11
SAUR359786 ncbi Staphylococcus aureus aureus JH91
SAUR282459 ncbi Staphylococcus aureus aureus MSSA4761
SAUR196620 ncbi Staphylococcus aureus aureus MW21
SAUR158879 ncbi Staphylococcus aureus aureus N3151
SAUR158878 ncbi Staphylococcus aureus aureus Mu501
SACI330779 ncbi Sulfolobus acidocaldarius DSM 6390
PTOR263820 ncbi Picrophilus torridus DSM 97901
PPEN278197 ncbi Pediococcus pentosaceus ATCC 257451
PMOB403833 ncbi Petrotoga mobilis SJ951
PISL384616 ncbi Pyrobaculum islandicum DSM 41840
PHOR70601 ncbi Pyrococcus horikoshii OT31
PFUR186497 ncbi Pyrococcus furiosus DSM 36380
PAST100379 Onion yellows phytoplasma0
PARS340102 ncbi Pyrobaculum arsenaticum DSM 135140
PAER178306 ncbi Pyrobaculum aerophilum IM20
PABY272844 ncbi Pyrococcus abyssi GE50
MTHE349307 ncbi Methanosaeta thermophila PT0
MTHE187420 ncbi Methanothermobacter thermautotrophicus Delta H1
MSYN262723 ncbi Mycoplasma synoviae 530
MSTA339860 ncbi Methanosphaera stadtmanae DSM 30910
MSED399549 ncbi Metallosphaera sedula DSM 53481
MPUL272635 ncbi Mycoplasma pulmonis UAB CTIP0
MPNE272634 ncbi Mycoplasma pneumoniae M1290
MPEN272633 ncbi Mycoplasma penetrans HF-20
MMYC272632 ncbi Mycoplasma mycoides mycoides SC str. PG10
MMOB267748 ncbi Mycoplasma mobile 163K0
MMAZ192952 ncbi Methanosarcina mazei Go10
MMAR444158 ncbi Methanococcus maripaludis C61
MMAR426368 ncbi Methanococcus maripaludis C71
MMAR402880 ncbi Methanococcus maripaludis C51
MMAR368407 ncbi Methanoculleus marisnigri JR11
MMAR267377 ncbi Methanococcus maripaludis S21
MLAB410358 ncbi Methanocorpusculum labreanum Z1
MKAN190192 ncbi Methanopyrus kandleri AV190
MJAN243232 ncbi Methanocaldococcus jannaschii DSM 26611
MHYO295358 ncbi Mycoplasma hyopneumoniae 2320
MHYO262722 ncbi Mycoplasma hyopneumoniae 74480
MHYO262719 ncbi Mycoplasma hyopneumoniae J0
MHUN323259 ncbi Methanospirillum hungatei JF-10
MGIL350054 ncbi Mycobacterium gilvum PYR-GCK1
MGEN243273 ncbi Mycoplasma genitalium G370
MFLO265311 ncbi Mesoplasma florum L10
MCAP340047 ncbi Mycoplasma capricolum capricolum ATCC 273430
MBAR269797 ncbi Methanosarcina barkeri Fusaro1
MART243272 ncbi Mycoplasma arthritidis 158L3-10
MAEO419665 ncbi Methanococcus aeolicus Nankai-31
MACE188937 ncbi Methanosarcina acetivorans C2A0
LSAK314315 ncbi Lactobacillus sakei sakei 23K1
LPLA220668 ncbi Lactobacillus plantarum WCFS11
LINT267671 ncbi Leptospira interrogans serovar Copenhageni str. Fiocruz L1-1300
LINT189518 ncbi Leptospira interrogans serovar Lai str. 566010
LBRE387344 ncbi Lactobacillus brevis ATCC 3671
LBOR355277 ncbi Leptospira borgpetersenii serovar Hardjo-bovis JB1970
LBOR355276 ncbi Leptospira borgpetersenii serovar Hardjo-bovis L5500
LBIF456481 ncbi Leptospira biflexa serovar Patoc strain Patoc 1 (Paris)1
LBIF355278 ncbi Leptospira biflexa serovar Patoc strain Patoc 1 (Ames)1
IHOS453591 ncbi Ignicoccus hospitalis KIN4/I0
HPYL85963 ncbi Helicobacter pylori J991
HPYL357544 ncbi Helicobacter pylori HPAG11
HPY ncbi Helicobacter pylori 266951
HBUT415426 ncbi Hyperthermus butylicus DSM 54560
HACI382638 ncbi Helicobacter acinonychis Sheeba1
DPSY177439 ncbi Desulfotalea psychrophila LSv541
CSUL444179 ncbi Candidatus Sulcia muelleri GWSS1
CPNE182082 ncbi Chlamydophila pneumoniae TW-1831
CPNE138677 ncbi Chlamydophila pneumoniae J1381
CPNE115713 ncbi Chlamydophila pneumoniae CWL0291
CPNE115711 ncbi Chlamydophila pneumoniae AR391
CMUR243161 ncbi Chlamydia muridarum Nigg1
CMET456442 ncbi Candidatus Methanoregula boonei 6A80
CMAQ397948 ncbi Caldivirga maquilingensis IC-1670
CKOR374847 ncbi Candidatus Korarchaeum cryptofilum OPF80
CGLU196627 ncbi Corynebacterium glutamicum ATCC 130320
CDIP257309 ncbi Corynebacterium diphtheriae NCTC 131291
BTUR314724 ncbi Borrelia turicatae 91E1350
BHER314723 ncbi Borrelia hermsii DAH0
BGAR290434 ncbi Borrelia garinii PBi0
BBUR224326 ncbi Borrelia burgdorferi B310
BAPH372461 ncbi Buchnera aphidicola Cc (Cinara cedri)1
BAFZ390236 ncbi Borrelia afzelii PKo0
AYEL322098 ncbi Aster yellows witches-broom phytoplasma AYWB0
AURANTIMONAS Aurantimonas manganoxydans SI85-9A10
APER272557 ncbi Aeropyrum pernix K10
AFUL224325 ncbi Archaeoglobus fulgidus DSM 43041


Names of the homologs of the genes in the group in each of these orgs
  EG11059   EG10794   EG10454   EG10327   EG10218   EG10217   EG10169   
UURE95667
UURE95664
UPAR505682
UMET351160 LRC233
TWHI218496 TW0703
TWHI203267 TW723
TPEN368408
TPAL243276
TKOD69014
TDEN243275 TDE_1973
STOK273063
SSOL273057 SSO0632
SPYO370553
SPYO370551
SPYO319701 M28_SPY1474
SPYO293653 M5005_SPY0024
SPYO286636 M6_SPY1479
SPYO198466 SPYM3_1518
SPYO193567 SPS0348
SPYO160490
SMAR399550
SEPI176279 SERP1264
SAUR93062 SACOL1748
SAUR93061 SAOUHSC_01809
SAUR426430 NWMN_1595
SAUR418127 SAHV_1687
SAUR367830 SAUSA300_1647
SAUR359787 SAURJH1_1791
SAUR359786 SAURJH9_1757
SAUR282459 SAS1628
SAUR196620 MW1644
SAUR158879 SA1523
SAUR158878 SAV1701
SACI330779
PTOR263820 PTO1256
PPEN278197 PEPE_0130
PMOB403833 PMOB_1456
PISL384616
PHOR70601 PH0240
PFUR186497
PAST100379
PARS340102
PAER178306
PABY272844
MTHE349307
MTHE187420 MTH646
MSYN262723
MSTA339860
MSED399549 MSED_1981
MPUL272635
MPNE272634
MPEN272633
MMYC272632
MMOB267748
MMAZ192952
MMAR444158 MMARC6_1523
MMAR426368 MMARC7_0396
MMAR402880 MMARC5_0439
MMAR368407 MEMAR_0228
MMAR267377 MMP1146
MLAB410358 MLAB_0202
MKAN190192
MJAN243232 MJ_0204
MHYO295358
MHYO262722
MHYO262719
MHUN323259
MGIL350054 MFLV_1634
MGEN243273
MFLO265311
MCAP340047
MBAR269797 MBAR_A3498
MART243272
MAEO419665 MAEO_0292
MACE188937
LSAK314315 LSA0850
LPLA220668 LP_2570
LINT267671
LINT189518
LBRE387344 LVIS_1252
LBOR355277
LBOR355276
LBIF456481 LEPBI_I0549
LBIF355278 LBF_0530
IHOS453591
HPYL85963 JHP0884
HPYL357544 HPAG1_0934
HPY HP0950
HBUT415426
HACI382638 HAC_1026
DPSY177439 DP2878
CSUL444179 SMGWSS_202
CPNE182082 CPB0059
CPNE138677 CPJ0058
CPNE115713 CPN0058
CPNE115711 CP_0717
CMUR243161 TC_0566
CMET456442
CMAQ397948
CKOR374847
CGLU196627
CDIP257309 DIP1785
BTUR314724
BHER314723
BGAR290434
BBUR224326
BAPH372461 BCC_129
BAFZ390236
AYEL322098
AURANTIMONAS
APER272557
AFUL224325 AF_0873


Organism features enriched in list (features available for 107 out of the 112 orgs in the list)
Feature    Pvalue       Num occurrences in list  Total num occurrences  
Arrangment:Clusters 0.00002101117
Disease:Leptospirosis 0.001083244
Disease:Pharyngitis 0.006020358
Disease:Toxic-shock_syndrome_and_staphylococcal_scarlet_fever 6.727e-6911
Disease:Wide_range_of_infections 0.0000966811
Disease:bronchitis_and_pneumonitis 0.006020358
Endospores:No 2.559e-2283211
GC_Content_Range4:0-40 1.038e-865213
GC_Content_Range4:60-100 1.910e-113145
GC_Content_Range7:0-30 9.121e-62147
GC_Content_Range7:30-40 0.000680744166
GC_Content_Range7:60-70 2.834e-103134
Genome_Size_Range5:0-2 7.983e-1866155
Genome_Size_Range5:4-6 1.156e-126184
Genome_Size_Range9:0-1 1.427e-91927
Genome_Size_Range9:1-2 7.461e-947128
Genome_Size_Range9:4-5 9.091e-6496
Genome_Size_Range9:5-6 9.649e-7288
Gram_Stain:Gram_Neg 8.989e-1033333
Habitat:Host-associated 1.786e-659206
Habitat:Multiple 9.962e-910178
Motility:No 1.160e-648151
Optimal_temp.:- 4.882e-627257
Optimal_temp.:100 0.006041033
Optimal_temp.:30-37 0.00029841018
Optimal_temp.:35-40 0.006041033
Optimal_temp.:85 0.001083244
Oxygen_Req:Aerobic 0.001854022185
Oxygen_Req:Anaerobic 0.000073633102
Salinity:Non-halophilic 0.001974330106
Shape:Coccus 3.540e-63182
Shape:Irregular_coccus 9.417e-91417
Shape:Rod 8.419e-2022347
Shape:Sphere 3.590e-101619
Shape:Spiral 0.00001181734
Temp._range:Hyperthermophilic 3.575e-91723



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ORGANISMS ENRICHED FOR GROUP:

Total number of orgs: 2
Effective number of orgs (counting one per cluster within 468 clusters): 1

Organism list
Homologs in each organism in the list
Features enriched in organism list


Follow (ncbi) link, when present, to find the set of organism features for each organism
Org ID  Org Name    Pvalue       # genes in tgt genome found in org  # genes in group found in org  
CBUR360115 ncbi Coxiella burnetii RSA 331 0.00816859977
CBUR227377 ncbi Coxiella burnetii RSA 493 0.009008710117


Names of the homologs of the genes in the group in each of these orgs
  EG11059   EG10794   EG10454   EG10327   EG10218   EG10217   EG10169   
CBUR360115 COXBURSA331_A1074COXBURSA331_A1050COXBURSA331_A1055COXBURSA331_A1053COXBURSA331_A1052COXBURSA331_A1054COXBURSA331_A1051
CBUR227377 CBU_0875CBU_0897CBU_0892CBU_0894CBU_0895CBU_0893CBU_0896


Organism features enriched in list (features available for 2 out of the 2 orgs in the list)
Feature    Pvalue       Num occurrences in list  Total num occurrences  
Disease:Q_fever 5.894e-622
Shape:Coccobacillus 0.0003242211



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ORGANISMS DEPLETED FOR GROUP:




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PHYLOGENETIC PROFILE SIMILARITY WITH KNOWN PATHWAYS:

Pathways or complexes with absolute value of Pearson coefficient with respect to candidate larger than 0.4 are listed below
The candidate is assumed to exist in orgs listed in section List of organisms containing most genes from the group


Pathway or complex  # Orgs containing it  # of those orgs also containing candidate  Pearson Coeff  
GLYCOCAT-PWY (glycogen degradation I)2461560.6552
COBALSYN-PWY (adenosylcobalamin salvage from cobinamide I)1951320.6123
PWY-5111 (CMP-KDO biosynthesis II (from D-arabinose 5-phosphate))3001630.5852
PWY-5918 (heme biosynthesis I)2721530.5724
KDO-LIPASYN-PWY (KDO2-lipid A biosynthesis I)2251370.5672
HEME-BIOSYNTHESIS-II (heme biosynthesis from uroporphyrinogen-III I)2861550.5565
PWY0-1241 (ADP-L-glycero-β-D-manno-heptose biosynthesis)2181320.5479
PWY4FS-7 (phosphatidylglycerol biosynthesis I (plastidic))2911550.5460
PWY-1269 (CMP-KDO biosynthesis I)3251640.5433
PWY0-1319 (CDP-diacylglycerol biosynthesis II)2961560.5429
PHOSLIPSYN-PWY (phospholipid biosynthesis I)2901530.5336
PWY-4041 (γ-glutamyl cycle)2791490.5280
PWY-46 (putrescine biosynthesis III)138970.5150
GLUTATHIONESYN-PWY (glutathione biosynthesis)3391630.5101
3-HYDROXYPHENYLACETATE-DEGRADATION-PWY (4-hydroxyphenylacetate degradation)1491010.5097
PWY-5148 (acyl-CoA hydrolysis)2271290.5021
NAGLIPASYN-PWY (lipid IVA biosynthesis)3481640.5010
PWY-5857 (ubiquinone-10 biosynthesis (prokaryotic))1831130.4989
ENTNER-DOUDOROFF-PWY (Entner-Doudoroff pathway I)2491350.4933
GLYCOLYSIS-E-D (superpathway of glycolysis and Entner-Doudoroff)2491350.4933
GLUCONSUPER-PWY (D-gluconate degradation)2291270.4822
TYRFUMCAT-PWY (tyrosine degradation I)1841110.4802
PWY-5855 (ubiquinone-7 biosynthesis (prokaryotic))1911130.4758
PWY-5913 (TCA cycle variation IV)3011480.4750
PWY0-1329 (succinate to cytochrome bo oxidase electron transfer)96720.4572
LIPA-CORESYN-PWY (Lipid A-core biosynthesis)1761050.4560
ECASYN-PWY (enterobacterial common antigen biosynthesis)1911100.4524
AST-PWY (arginine degradation II (AST pathway))120820.4501
PWY0-845 (superpathway of pyridoxal 5'-phosphate biosynthesis and salvage)3291510.4419
P184-PWY (protocatechuate degradation I (meta-cleavage pathway))94690.4364
UBISYN-PWY (ubiquinol-8 biosynthesis (prokaryotic))3981660.4306
PWY-5028 (histidine degradation II)130840.4303
GDPRHAMSYN-PWY (GDP-D-rhamnose biosynthesis)156940.4278
PWY0-1335 (NADH to cytochrome bo oxidase electron transfer)112750.4170
GALACTITOLCAT-PWY (galactitol degradation)73570.4154
PWY-5856 (ubiquinone-9 biosynthesis (prokaryotic))2551260.4135
PWY0-541 (cyclopropane fatty acid (CFA) biosynthesis)3001390.4121
DAPLYSINESYN-PWY (lysine biosynthesis I)3421500.4104
SO4ASSIM-PWY (sulfate reduction I (assimilatory))3111410.4046
KDOSYN-PWY (KDO transfer to lipid IVA I)1801000.4045
GLUT-REDOX-PWY (glutathione redox reactions II)2461220.4045



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PAIRWISE GENOME CONTEXT SCORE MATRIX:

  EG10794   EG10454   EG10327   EG10218   EG10217   EG10169   
EG110590.9988130.9993070.9992630.9991360.99910.998862
EG107940.9994020.9996280.999520.9993640.999943
EG104540.999580.9993740.9995880.999502
EG103270.9995940.9999110.999726
EG102180.9993370.999587
EG102170.999531
EG10169



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PAIRWISE BLAST SCORES:

  EG11059   EG10794   EG10454   EG10327   EG10218   EG10217   EG10169   
EG110590.0f0------
EG10794-0.0f0-----
EG10454--0.0f0----
EG10327---0.0f0---
EG10218----0.0f0--
EG10217-----0.0f0-
EG10169------0.0f0



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PATHWAYS OR PROTEIN COMPLEX MATCHES IN TARGET ORG:

For each case, all genes involved in the pathway or complex are listed. For each gene we list: a tag indicating whether the gene is part of the candidate list or not, the average and the minimum scores of the gene to the candidate list, the gene name, and its product names.



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GENOME CONTEXT INFORMATION:

Each row corresponds to a replicon in an organism, each column to a gene in the candidate. The second column indicates whether the organims was included in the list used to compute the genome context scores or not. Some organisms are not included because they are phylogenetically too similar to others already in the list.
The number in the matrix indicate the position of the homolog of the gene in the replicon. All numbers are relative to the smaller one, which is assigned a position of zero. Two columns with the same number indicate that the two genes matched the same gene in that organism.

Genome browser links for gene clusters

The links below opens a genome browser BioCyc page for each cluster of genes in the target genome. These pages shows the central gene of the cluster in the target genome and its best homolog in the reference genomes, for the genomes that contain homologs for at least 75% of the genes in the group. Only one genome per phylogenetic cluster of organisms is shown, to keep the list smaller.

EG10169 EG10217 EG10218 EG10327 EG10454 EG10794 EG11059 (centered at EG10327)


ORG:REPLICON:CIRC?\GENE  IN REF LIST  EG11059   EG10794   EG10454   EG10327   EG10218   EG10217   EG10169   
391/623419/623405/623399/62392/623410/623252/623
AAEO224324:0:Tyes999496-1122-0-
AAUR290340:2:Tyes-11295260---
AAVE397945:0:Tyes-64346406410642
ABAC204669:0:Tyes-4544-0-46292159
ABAU360910:0:Tyes-6231165620-0622
ABOR393595:0:Tyes10083241
ABUT367737:0:Tyes13381638---0-
ACAU438753:0:Tyes32381268502-5010
ACEL351607:0:Tyes167317340405---
ACRY349163:8:Tyes131217439-4400
ADEH290397:0:Tyes322938620885-884-
AEHR187272:0:Tyes011389710
AFER243159:0:Tyes01038-79
AFUL224325:0:Tyes-0-----
AHYD196024:0:Tyes79117897877867880
ALAI441768:0:Tyes327----0-
AMAR234826:0:Tyes809-364391--0
AMAR329726:9:Tyes217513470481-2605-
AMET293826:0:Tyes223003490----
ANAE240017:0:Tyes11151321-0---
AORE350688:0:Tyes76214512801654-0-
APHA212042:0:Tyes786-0232---
APLE416269:0:Tyes7971480207-2060
APLE434271:0:Tno7731450166-1650
ASAL382245:5:Tyes930918988901
ASP1667:3:Tyes-1353-0---
ASP232721:2:Tyes-0485324891
ASP62928:0:Tyes-805-47
ASP62977:0:Tyes-8090159-158-
ASP76114:2:Tyes-805647
AVAR240292:3:Tyes343434655323511-0-
BABO262698:0:Tno0-584----
BABO262698:1:Tno-0---15542
BAMB339670:2:Tno-906-58
BAMB398577:2:Tno-906-58
BAMY326423:0:Tyes148251502335-2448-
BANT260799:0:Tno33820180--4225-
BANT261594:2:Tno33290---4195-
BANT568206:2:Tyes33103681--4426-
BANT592021:2:Tno35350194--4413-
BAPH198804:0:Tyes--300---
BAPH372461:0:Tyes--0----
BBAC264462:0:Tyes023416----
BBAC360095:0:Tyes5630771--8001
BBRO257310:0:Tyes-4610458-1643460
BCAN483179:0:Tno0-142----
BCAN483179:1:Tno-0---16452
BCEN331271:1:Tno-093-41
BCEN331272:2:Tyes-906-58
BCER226900:1:Tyes19980140--4185-
BCER288681:0:Tno19400131--4088-
BCER315749:1:Tyes20520139--2867-
BCER405917:1:Tyes20230209--4176-
BCER572264:1:Tno34460134--4244-
BCIC186490:0:Tyes-402-13
BCLA66692:0:Tyes2072-0--2590-
BFRA272559:1:Tyes157--2548--0
BFRA295405:0:Tno0--2569---
BHAL272558:0:Tyes229149702939-3070-
BHEN283166:0:Tyes116346534--0466
BJAP224911:0:Fyes035817657252-2513582
BLIC279010:0:Tyes16835150--2822-
BLON206672:0:Tyes-0-235---
BMAL243160:0:Tno-093-41
BMAL320388:0:Tno-906-58
BMAL320389:0:Tyes-906-58
BMEL224914:0:Tno144-0----
BMEL224914:1:Tno-1---5380
BMEL359391:0:Tno0-581----
BMEL359391:1:Tno-0---15021
BOVI236:0:Tyes0-127----
BOVI236:1:Tyes-0---14042
BPAR257311:0:Tno-34070-17062
BPER257313:0:Tyes-3690-19882
BPET94624:0:Tyes-4251113422-0424
BPSE272560:0:Tyes-093-41
BPSE320372:0:Tno-093-41
BPSE320373:0:Tno-093-41
BPUM315750:0:Tyes147849102331-2445-
BQUI283165:0:Tyes878373340-1374
BSP107806:2:Tyes--310---
BSP36773:1:Tyes-093-41
BSP376:0:Tyes25130236350-13024
BSUB:0:Tyes16445530--2936-
BSUI204722:0:Tyes0-142----
BSUI204722:1:Tyes-0---16072
BSUI470137:0:Tno0-143----
BSUI470137:1:Tno-0---14312
BTHA271848:0:Tno-906-58
BTHE226186:0:Tyes2340--0---
BTHU281309:1:Tno19380138--4028-
BTHU412694:1:Tno30120133--3740-
BTRI382640:1:Tyes1515679350-1680
BVIE269482:6:Tyes-906-58
BWEI315730:4:Tyes324601313965-4096-
BXEN266265:1:Tyes-906-58
CABO218497:0:Tyes--0--166-
CACE272562:1:Tyes-01713--2181-
CAULO:0:Tyes01427253338-3339-
CBEI290402:0:Tyes7280-715-20-
CBLO203907:0:Tyes--20-1-
CBLO291272:0:Tno--20-1-
CBOT36826:1:Tno123997201250-1676-
CBOT441770:0:Tyes130396901315-1738-
CBOT441771:0:Tno116388901174-1603-
CBOT441772:1:Tno119692601207-1718-
CBOT498213:1:Tno1312104001323-1757-
CBOT508765:1:Tyes13690---50-
CBOT515621:2:Tyes1278100101289-1725-
CBOT536232:0:Tno1385111101396-1854-
CBUR227377:1:Tyes0201517181619
CBUR360115:1:Tno23053241
CBUR434922:2:Tno0221719201821
CCAV227941:1:Tyes--0--183-
CCHL340177:0:Tyes0251-183-7-
CCON360104:2:Tyes141----0-
CCUR360105:0:Tyes12950---1344-
CDES477974:0:Tyes648134601181-7561931
CDIF272563:1:Tyes3056016033084-1756-
CDIP257309:0:Tyes---0---
CEFF196164:0:Fyes0--2097---
CFEL264202:1:Tyes--189--0-
CFET360106:0:Tyes117348---0-
CHOM360107:1:Tyes694810---0-
CHUT269798:0:Tyes0-3411381-3091-
CHYD246194:0:Tyes803--0-790-
CJAP155077:0:Tyes-805-47
CJEI306537:0:Tyes-0-217---
CJEJ192222:0:Tyes864----0-
CJEJ195099:0:Tno1012----0-
CJEJ354242:2:Tyes844----0-
CJEJ360109:0:Tyes584----0-
CJEJ407148:0:Tno871----0-
CKLU431943:1:Tyes30522541---0-
CMIC31964:2:Tyes0837-1605---
CMIC443906:2:Tyes1510-748---
CMUR243161:1:Tyes-----0-
CNOV386415:0:Tyes799-205781-0-
CPEL335992:0:Tyes0462-247-248463
CPER195102:1:Tyes12280309----
CPER195103:0:Tno14590568--651-
CPER289380:3:Tyes11820384--467-
CPHY357809:0:Tyes-249830812220-0-
CPNE115711:1:Tyes-----0-
CPNE115713:0:Tno-----0-
CPNE138677:0:Tno-----0-
CPNE182082:0:Tno-----0-
CPRO264201:0:Fyes---1389-0-
CPSY167879:0:Tyes7053241
CRUT413404:0:Tyes0483046-75-
CSAL290398:0:Tyes-805-47
CSP501479:7:Fyes0--26-27-
CSP501479:8:Fyes-11340---1137
CSP78:2:Tyes2144020932507-25061
CSUL444179:0:Tyes0------
CTEP194439:0:Tyes164050-0-1271-
CTET212717:0:Tyes1984168515821992-0-
CTRA471472:0:Tyes--179--0-
CTRA471473:0:Tno--179--0-
CVES412965:0:Tyes0453043-69-
CVIO243365:0:Tyes2550252322481
DARO159087:0:Tyes-805647
DDES207559:0:Tyes0--2851---
DETH243164:0:Tyes7551182----0
DGEO319795:1:Tyes-0-270-2105-
DHAF138119:0:Tyes12122650-1903-0-
DNOD246195:0:Tyes-0612310-311308
DOLE96561:0:Tyes1777-02--329
DPSY177439:2:Tyes---0---
DRAD243230:3:Tyes-0-114-982-
DRED349161:0:Tyes1688211602310-2066-
DSHI398580:5:Tyes3150203718411-02035
DSP216389:0:Tyes717-----0
DSP255470:0:Tno793--0--155
DVUL882:1:Tyes1854--1689--0
ECAN269484:0:Tyes596-700--346
ECAR218491:0:Tyes7063241
ECHA205920:0:Tyes0-581656--277
ECOL199310:0:Tno8074351
ECOL316407:0:Tno7063241
ECOL331111:6:Tno7063241
ECOL362663:0:Tno7063241
ECOL364106:1:Tno8074351
ECOL405955:2:Tyes7063241
ECOL409438:6:Tyes7063241
ECOL413997:0:Tno7063241
ECOL439855:4:Tno7063241
ECOL469008:0:Tno0714536
ECOL481805:0:Tno0714536
ECOL585034:0:Tno7063241
ECOL585035:0:Tno7063241
ECOL585055:0:Tno7063241
ECOL585056:2:Tno7063241
ECOL585057:0:Tno7063241
ECOL585397:0:Tno7063241
ECOL83334:0:Tno7063241
ECOLI:0:Tno7063241
ECOO157:0:Tno7063241
EFAE226185:3:Tyes0-17261640-1590-
EFER585054:1:Tyes0714536
ELIT314225:0:Tyes109210090--1127820
ERUM254945:0:Tyes589-660--357
ERUM302409:0:Tno586-660--354
ESP42895:1:Tyes7063241
FALN326424:0:Tyes---0-1262-
FJOH376686:0:Tyes868--0-1014-
FMAG334413:1:Tyes01087833803---
FNOD381764:0:Tyes-1353-0---
FNUC190304:0:Tyes---606-0-
FPHI484022:1:Tyes-37112100-1-
FRANT:0:Tno-12566020-1-
FSP106370:0:Tyes0--955-2664-
FSP1855:0:Tyes2594321620371296-0-
FSUC59374:0:Tyes212-----0
FTUL351581:0:Tno-7090211-212-
FTUL393011:0:Tno-6190195-196-
FTUL393115:0:Tyes-12325970-1-
FTUL401614:0:Tyes-14166211-0-
FTUL418136:0:Tno-07331359-1360-
FTUL458234:0:Tno-6350187-188-
GBET391165:0:Tyes161102201542-15431
GFOR411154:0:Tyes2968--2516-0-
GKAU235909:1:Tyes118915302571-2676-
GMET269799:1:Tyes21315622142098-20990
GOXY290633:5:Tyes0753947324-323752
GSUL243231:0:Tyes-01237730-732-
GTHE420246:1:Tyes980-02388-2488-
GURA351605:0:Tyes0102212221-22232984
GVIO251221:0:Tyes--25310-541-
HACI382638:1:Tyes-----0-
HARS204773:0:Tyes-805647
HAUR316274:2:Tyes---0-2954-
HCHE349521:0:Tyes-805-47
HDUC233412:0:Tyes0-655959-960742
HHAL349124:0:Tyes10083-41
HHEP235279:0:Tyes14080---769-
HINF281310:0:Tyes291114464-4650
HINF374930:0:Tyes-331---0-
HINF71421:0:Tno221143155-540
HMAR272569:7:Tyes---0---
HMAR272569:8:Tyes-0-----
HMOD498761:0:Tyes223530331323--0-
HMUK485914:1:Tyes-0-1058---
HNEP81032:0:Tyes06504503357-3358-
HPY:0:Tno-----0-
HPYL357544:1:Tyes-----0-
HPYL85963:0:Tno-----0-
HSAL478009:4:Tyes-870-0---
HSOM205914:1:Tyes2363800-137
HSOM228400:0:Tno5595920557-558593
HSP64091:2:Tno-848-0---
HWAL362976:1:Tyes-1081-0---
ILOI283942:0:Tyes7053241
JSP290400:1:Tyes55-34410-11664
JSP375286:0:Tyes-083241
KPNE272620:2:Tyes7063241
KRAD266940:2:Fyes-0-559---
LACI272621:0:Tyes54712030489---
LBIF355278:2:Tyes--0----
LBIF456481:2:Tno--0----
LBRE387344:2:Tyes---0---
LCAS321967:1:Tyes0--1116---
LCHO395495:0:Tyes-805-47
LDEL321956:0:Tyes--0248---
LDEL390333:0:Tyes--0247---
LGAS324831:0:Tyes723-0860---
LHEL405566:0:Tyes59517-0---
LINN272626:1:Tno0427-110-132-
LINT363253:3:Tyes817--0---
LJOH257314:0:Tyes--0435---
LLAC272622:5:Tyes115810470737-312-
LLAC272623:0:Tyes113610420671-293-
LMES203120:1:Tyes1652-0----
LMON169963:0:Tno03561220114-136-
LMON265669:0:Tyes03331105116-139-
LPLA220668:0:Tyes0------
LPNE272624:0:Tno999372040-3942
LPNE297245:1:Fno962366031-3033
LPNE297246:1:Fyes992377031-3033
LPNE400673:0:Tno1016370031-3033
LREU557436:0:Tyes519013641184---
LSAK314315:0:Tyes---0---
LSPH444177:1:Tyes14120-3631-2655-
LWEL386043:0:Tyes03321094110-132-
LXYL281090:0:Tyes01617-351---
MABS561007:1:Tyes0369-1267---
MAEO419665:0:Tyes-0-----
MAER449447:0:Tyes47750374860-4255-
MAQU351348:2:Tyes-083-41
MAVI243243:0:Tyes0348-1306---
MBAR269797:1:Tyes-0-----
MBOV233413:0:Tno29360-1660---
MBOV410289:0:Tno29290-1619---
MBUR259564:0:Tyes01698-----
MCAP243233:0:Tyes0408416411-412409
MEXT419610:0:Tyes1069229002804-28052291
MFLA265072:0:Tyes-083241
MGIL350054:3:Tyes-0-----
MJAN243232:2:Tyes-0-----
MLAB410358:0:Tyes-0-----
MLEP272631:0:Tyes-431-0---
MLOT266835:2:Tyes02809362--5332810
MMAG342108:0:Tyes346184803773-37711849
MMAR267377:0:Tyes-0-----
MMAR368407:0:Tyes-0-----
MMAR394221:0:Tyes277311143560-11115
MMAR402880:1:Tyes-0-----
MMAR426368:0:Tyes-0-----
MMAR444158:0:Tyes-0-----
MPET420662:1:Tyes-081113241
MSED399549:0:Tyes-0-----
MSME246196:0:Tyes4686423303081---
MSP164756:1:Tno380334530----
MSP164757:0:Tno411437810----
MSP189918:2:Tyes386235120----
MSP266779:3:Tyes30085900--269591
MSP400668:0:Tyes-805-47
MSP409:2:Tyes2575201535840-12014
MSUC221988:0:Tyes991173171-1720
MTBCDC:0:Tno31420-1770---
MTBRV:0:Tno29300-1656---
MTHE187420:0:Tyes-0-----
MTHE264732:0:Tyes09631328----
MTUB336982:0:Tno28990-1634---
MTUB419947:0:Tyes30230-1716---
MVAN350058:0:Tyes3870-----
MXAN246197:0:Tyes--23221-0-
NARO279238:0:Tyes1164671625--0665
NEUR228410:0:Tyes-805647
NEUT335283:2:Tyes-805647
NFAR247156:2:Tyes0266532----
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