CANDIDATE ID: 336

CANDIDATE ID: 336

NUMBER OF GENES: 7
AVERAGE SCORE:    9.9915614e-1 (range=[0.0,1.0])
AVERAGE MINIMUM BLAST P-VAL:    1.0000000e+0

Gene List
List of organisms containing most genes from the group
    Phylogenetic tree highlighting these organisms (opens new page)
List of organisms containing very few or no genes from the group
List of organisms enriched for group
List of organisms depleted for group
Phylogenetic profile similarity with known pathways
Pairwise genome context scores
Pairwise Blast scores
Pathway or protein complex matches in target organism
Genome context matrix
    Genes and their orthologs in genome browser BioCyc pages




GENE LIST:

- G6580 (nudJ) (b1134)
   Products of gene:
     - G6580-MONOMER (HMP-PP hydrolase /thiamin pyrophosphate hydrolase [multifunctional])
       Reactions:
        GDP + H2O  ->  GMP + phosphate + H+
        4-amino-5-hydroxymethyl-2-methylpyrimidine-pyrophosphate + H2O  ->  hydroxymethylpyrimidine phosphate + phosphate + H+
        thiamine diphosphate + H2O  ->  thiamine-phosphate + phosphate + H+

- G6463 (clpS) (b0881)
   Products of gene:
     - G6463-MONOMER (specificity factor for ClpA-ClpP chaperone-protease complex)

- EG11345 (hflD) (b1132)
   Products of gene:
     - EG11345-MONOMER (lysogenization regulator)

- EG11344 (mnmA) (b1133)
   Products of gene:
     - EG11344-MONOMER (tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase)
       Reactions:
        uridine + L-cysteine + ATP  ->  2-thiouridine + L-alanine + AMP + diphosphate

- EG11314 (purB) (b1131)
   Products of gene:
     - ASL-MONOMER (5'-phosphoribosyl-4-(N-succinocarboxamide)-5-aminoimidazole lyase [multifunctional])
       Reactions:
        5'-phosphoribosyl-4-(N-succinocarboxamide)-5-aminoimidazole  ->  fumarate + aminoimidazole carboxamide ribonucleotide
         In pathways
         PRPP-PWY (superpathway of histidine, purine, and pyrimidine biosynthesis)
         DENOVOPURINE2-PWY (purine nucleotides de novo biosynthesis I)
         PWY-841 (PWY-841)
         PWY-6123 (inosine-5'-phosphate biosynthesis I)
         PWY-6124 (PWY-6124)
        adenylo-succinate  ->  fumarate + AMP
         In pathways
         PRPP-PWY (superpathway of histidine, purine, and pyrimidine biosynthesis)
         DENOVOPURINE2-PWY (purine nucleotides de novo biosynthesis I)
         P121-PWY (P121-PWY)
         PWY-841 (PWY-841)
         PWY-6126 (adenosine nucleotides de novo biosynthesis)

- EG11111 (cspD) (b0880)
   Products of gene:
     - EG11111-MONOMER (DNA replication inhibitor)
     - CPLX0-3301 (DNA replication inhibitor)

- EG10156 (clpA) (b0882)
   Products of gene:
     - EG10156-MONOMER (ClpA)
     - CPLX0-881 (ClpA ATP-dependent protease specificity component and chaperone)
     - CPLX0-3108 (ClpAXP)
       Reactions:
        a protein  =  a peptide + a peptide
     - CPLX0-3104 (ClpAP)
       Reactions:
        a protein  =  a peptide + a peptide



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ORGANISMS CONTAINING AT LEAST 6 GENES FROM THE GROUP:

Total number of orgs: 136
Effective number of orgs (counting one per cluster within 468 clusters): 83

Organism list
Homologs in each organism in the list
Features enriched in organism list


Follow (ncbi) link, when present, to find the set of organism features for each organism
Org ID  Org Name  # genes in group found in org  
YPSE349747 ncbi Yersinia pseudotuberculosis IP 317587
YPSE273123 ncbi Yersinia pseudotuberculosis IP 329537
YPES386656 ncbi Yersinia pestis Pestoides F7
YPES377628 ncbi Yersinia pestis Nepal5167
YPES360102 ncbi Yersinia pestis Antiqua7
YPES349746 ncbi Yersinia pestis Angola7
YPES214092 ncbi Yersinia pestis CO927
YPES187410 ncbi Yersinia pestis KIM 106
YENT393305 ncbi Yersinia enterocolitica enterocolitica 80817
XORY360094 ncbi Xanthomonas oryzae pv. oryzae PXO99A7
XORY342109 ncbi Xanthomonas oryzae pv. oryzae MAFF 3110187
XORY291331 ncbi Xanthomonas oryzae pv. oryzae KACC103317
XFAS405440 ncbi Xylella fastidiosa M126
XFAS183190 ncbi Xylella fastidiosa Temecula16
XFAS160492 ncbi Xylella fastidiosa 9a5c7
XCAM487884 Xanthomonas campestris pv. paulliniae7
XCAM316273 ncbi Xanthomonas campestris pv. vesicatoria str. 85-107
XCAM314565 ncbi Xanthomonas campestris pv. campestris str. 80047
XCAM190485 ncbi Xanthomonas campestris pv. campestris str. ATCC 339137
XAXO190486 ncbi Xanthomonas axonopodis pv. citri str. 3067
VVUL216895 ncbi Vibrio vulnificus CMCP66
VVUL196600 ncbi Vibrio vulnificus YJ0166
VPAR223926 ncbi Vibrio parahaemolyticus RIMD 22106336
VFIS312309 ncbi Vibrio fischeri ES1146
VCHO345073 ncbi Vibrio cholerae O3956
VCHO ncbi Vibrio cholerae O1 biovar El Tor str. N169616
TTUR377629 ncbi Teredinibacter turnerae T79017
TDEN292415 ncbi Thiobacillus denitrificans ATCC 252596
STYP99287 ncbi Salmonella enterica enterica serovar Typhimurium str. LT27
SSP94122 ncbi Shewanella sp. ANA-37
SSON300269 ncbi Shigella sonnei Ss0467
SSED425104 ncbi Shewanella sediminis HAW-EB37
SPRO399741 ncbi Serratia proteamaculans 5687
SPEA398579 ncbi Shewanella pealeana ATCC 7003457
SONE211586 ncbi Shewanella oneidensis MR-17
SLOI323850 ncbi Shewanella loihica PV-47
SHIGELLA ncbi Shigella flexneri 2a str. 2457T7
SHAL458817 ncbi Shewanella halifaxensis HAW-EB47
SGLO343509 ncbi Sodalis glossinidius morsitans7
SFLE373384 ncbi Shigella flexneri 5 str. 84017
SFLE198214 ncbi Shigella flexneri 2a str. 3017
SENT454169 ncbi Salmonella enterica enterica serovar Heidelberg str. SL4767
SENT321314 ncbi Salmonella enterica enterica serovar Choleraesuis str. SC-B677
SENT295319 ncbi Salmonella enterica enterica serovar Paratyphi A str. ATCC 91507
SENT220341 ncbi Salmonella enterica enterica serovar Typhi str. CT187
SENT209261 ncbi Salmonella enterica enterica serovar Typhi str. Ty27
SDYS300267 ncbi Shigella dysenteriae Sd1977
SDEN318161 ncbi Shewanella denitrificans OS2176
SDEG203122 ncbi Saccharophagus degradans 2-407
SBOY300268 ncbi Shigella boydii Sb2277
SBAL402882 ncbi Shewanella baltica OS1857
SBAL399599 ncbi Shewanella baltica OS1957
RSOL267608 ncbi Ralstonia solanacearum GMI10006
RMET266264 ncbi Ralstonia metallidurans CH346
REUT381666 ncbi Ralstonia eutropha H166
REUT264198 ncbi Ralstonia eutropha JMP1346
PSYR223283 ncbi Pseudomonas syringae pv. tomato str. DC30007
PSYR205918 ncbi Pseudomonas syringae pv. syringae B728a7
PSTU379731 ncbi Pseudomonas stutzeri A15017
PPUT76869 ncbi Pseudomonas putida GB-17
PPUT351746 ncbi Pseudomonas putida F17
PPUT160488 ncbi Pseudomonas putida KT24407
PPRO298386 ncbi Photobacterium profundum SS96
PMEN399739 ncbi Pseudomonas mendocina ymp7
PLUM243265 ncbi Photorhabdus luminescens laumondii TTO17
PHAL326442 ncbi Pseudoalteromonas haloplanktis TAC1256
PFLU220664 ncbi Pseudomonas fluorescens Pf-57
PFLU216595 ncbi Pseudomonas fluorescens SBW257
PFLU205922 ncbi Pseudomonas fluorescens Pf0-17
PENT384676 ncbi Pseudomonas entomophila L487
PATL342610 ncbi Pseudoalteromonas atlantica T6c6
PAER208964 ncbi Pseudomonas aeruginosa PAO17
PAER208963 ncbi Pseudomonas aeruginosa UCBPP-PA147
NMUL323848 ncbi Nitrosospira multiformis ATCC 251966
NEUT335283 ncbi Nitrosomonas eutropha C916
NEUR228410 ncbi Nitrosomonas europaea ATCC 197186
MSP400668 ncbi Marinomonas sp. MWYL17
MPET420662 ncbi Methylibium petroleiphilum PM16
MFLA265072 ncbi Methylobacillus flagellatus KT6
MCAP243233 ncbi Methylococcus capsulatus Bath6
MAQU351348 ncbi Marinobacter aquaeolei VT86
LCHO395495 ncbi Leptothrix cholodnii SP-66
KPNE272620 ncbi Klebsiella pneumoniae pneumoniae MGH 785787
JSP375286 ncbi Janthinobacterium sp. Marseille6
ILOI283942 ncbi Idiomarina loihiensis L2TR6
HCHE349521 ncbi Hahella chejuensis KCTC 23967
HARS204773 ncbi Herminiimonas arsenicoxydans6
ESP42895 Enterobacter sp.7
EFER585054 ncbi Escherichia fergusonii ATCC 354697
ECOO157 ncbi Escherichia coli O157:H7 EDL9337
ECOL83334 Escherichia coli O157:H77
ECOL585397 ncbi Escherichia coli ED1a7
ECOL585057 ncbi Escherichia coli IAI397
ECOL585056 ncbi Escherichia coli UMN0267
ECOL585055 ncbi Escherichia coli 559897
ECOL585035 ncbi Escherichia coli S887
ECOL585034 ncbi Escherichia coli IAI17
ECOL481805 ncbi Escherichia coli ATCC 87396
ECOL469008 ncbi Escherichia coli BL21(DE3)7
ECOL439855 ncbi Escherichia coli SMS-3-57
ECOL413997 ncbi Escherichia coli B str. REL6067
ECOL409438 ncbi Escherichia coli SE117
ECOL405955 ncbi Escherichia coli APEC O16
ECOL364106 ncbi Escherichia coli UTI897
ECOL362663 ncbi Escherichia coli 5367
ECOL331111 ncbi Escherichia coli E24377A7
ECOL316407 ncbi Escherichia coli K-12 substr. W31107
ECOL199310 ncbi Escherichia coli CFT0737
ECAR218491 ncbi Pectobacterium atrosepticum SCRI10437
DNOD246195 ncbi Dichelobacter nodosus VCS1703A6
DARO159087 ncbi Dechloromonas aromatica RCB6
CVIO243365 ncbi Chromobacterium violaceum ATCC 124726
CSAL290398 ncbi Chromohalobacter salexigens DSM 30437
CPSY167879 ncbi Colwellia psychrerythraea 34H7
CJAP155077 Cellvibrio japonicus7
BVIE269482 ncbi Burkholderia vietnamiensis G46
BTHA271848 ncbi Burkholderia thailandensis E2646
BSP36773 Burkholderia sp.6
BPSE320373 ncbi Burkholderia pseudomallei 6686
BPSE320372 ncbi Burkholderia pseudomallei 1710b6
BPSE272560 ncbi Burkholderia pseudomallei K962436
BMAL320389 ncbi Burkholderia mallei NCTC 102476
BMAL320388 ncbi Burkholderia mallei SAVP16
BMAL243160 ncbi Burkholderia mallei ATCC 233446
BCEN331272 ncbi Burkholderia cenocepacia HI24246
BCEN331271 ncbi Burkholderia cenocepacia AU 10546
BAMB398577 ncbi Burkholderia ambifaria MC40-66
BAMB339670 ncbi Burkholderia ambifaria AMMD6
ASP76114 ncbi Aromatoleum aromaticum EbN16
ASP62977 ncbi Acinetobacter sp. ADP16
ASP62928 ncbi Azoarcus sp. BH726
ASAL382245 ncbi Aeromonas salmonicida salmonicida A4497
AHYD196024 Aeromonas hydrophila dhakensis7
AFER243159 ncbi Acidithiobacillus ferrooxidans ATCC 232707
AEHR187272 ncbi Alkalilimnicola ehrlichii MLHE-16
ABOR393595 ncbi Alcanivorax borkumensis SK27


Names of the homologs of the genes in the group in each of these orgs
  G6580   G6463   EG11345   EG11344   EG11314   EG11111   EG10156   
YPSE349747 YPSIP31758_1613YPSIP31758_2607YPSIP31758_1611YPSIP31758_1612YPSIP31758_1610YPSIP31758_2609YPSIP31758_3212
YPSE273123 YPTB2429YPTB1393YPTB2431YPTB2430YPTB2432YPTB1392YPTB1394
YPES386656 YPDSF_1809YPDSF_2328YPDSF_1811YPDSF_1810YPDSF_1812YPDSF_2330YPDSF_2911
YPES377628 YPN_1992YPN_2613YPN_1994YPN_1993YPN_1995YPN_2614YPN_2612
YPES360102 YPA_1885YPA_0657YPA_1887YPA_1886YPA_1888YPA_0656YPA_2766
YPES349746 YPANGOLA_A2850YPANGOLA_A1600YPANGOLA_A2852YPANGOLA_A2851YPANGOLA_A2853YPANGOLA_A1599YPANGOLA_A3475
YPES214092 YPO1639YPO1367YPO1637YPO1638YPO1636YPO1366YPO3275
YPES187410 Y1800Y2810Y1798Y1799Y1797Y0914
YENT393305 YE1723YE1517YE1721YE1722YE1720YE1516YE1518
XORY360094 XOOORF_2787XOOORF_2786XOOORF_2789XOOORF_2788XOOORF_2952XOOORF_3133XOOORF_2785
XORY342109 XOO2414XOO2413XOO2416XOO2415XOO1930XOO1765XOO2412
XORY291331 XOO2555XOO2554XOO2557XOO2556XOO2048XOO1870XOO2553
XFAS405440 XFASM12_0784XFASM12_0785XFASM12_0782XFASM12_0783XFASM12_0892XFASM12_0786
XFAS183190 PD_0663PD_0664PD_0661PD_0662PD_0762PD_0665
XFAS160492 XF1441XF1442XF1439XF1440XF1553XF2352XF1443
XCAM487884 XCC-B100_2264XCC-B100_2265XCC-B100_2262XCC-B100_2263XCC-B100_2781XCC-B100_3017XCC-B100_2266
XCAM316273 XCAORF_2244XCAORF_2245XCAORF_2242XCAORF_2243XCAORF_1757XCAORF_1541XCAORF_2246
XCAM314565 XC_2220XC_2219XC_2222XC_2221XC_2744XC_2955XC_2218
XCAM190485 XCC1965XCC1966XCC1963XCC1964XCC1492XCC1286XCC1967
XAXO190486 XAC1999XAC2000XAC1997XAC1998XAC1539XAC1337XAC2001
VVUL216895 VV1_2120VV1_2927VV1_2926VV1_2928VV1_2119VV1_2121
VVUL196600 VV2323VV1342VV1343VV1341VV2324VV2322
VPAR223926 VP1013VP1129VP1130VP1128VP1012VP1014
VFIS312309 VF1766VF1785VF1784VF1786VF1767VF1765
VCHO345073 VC0395_A0713VC0395_A0645VC0395_A0646VC0395_A0644VC0395_A0712VC0395_A0714
VCHO VC1143VC1127VC1128VC1126VC1142VC1144
TTUR377629 TERTU_1958TERTU_1962TERTU_1750TERTU_1751TERTU_1749TERTU_1961TERTU_1963
TDEN292415 TBD_0852TBD_1236TBD_0851TBD_0518TBD_0855TBD_1237
STYP99287 STM1235STM0944STM1233STM1234STM1232STM0943STM0945
SSP94122 SHEWANA3_1748SHEWANA3_1752SHEWANA3_1746SHEWANA3_1747SHEWANA3_1745SHEWANA3_1751SHEWANA3_1753
SSON300269 SSO_1152SSO_0882SSO_1150SSO_1151SSO_1149SSO_0867SSO_0883
SSED425104 SSED_2716SSED_1885SSED_1880SSED_1881SSED_1879SSED_1884SSED_1886
SPRO399741 SPRO_2023SPRO_1673SPRO_2021SPRO_2022SPRO_2020SPRO_1672SPRO_1674
SPEA398579 SPEA_2537SPEA_2533SPEA_2539SPEA_2538SPEA_2540SPEA_2534SPEA_2532
SONE211586 SO_2631SO_2627SO_2634SO_2633SO_2635SO_2628SO_2626
SLOI323850 SHEW_1561SHEW_1565SHEW_1559SHEW_1560SHEW_1558SHEW_1564SHEW_1566
SHIGELLA S1236YLJAYCFCYCFBPURBCSPDCLPA
SHAL458817 SHAL_1716SHAL_1720SHAL_1714SHAL_1715SHAL_1713SHAL_1719SHAL_1721
SGLO343509 SG1086SG1101SG1084SG1085SG1083SG1100SG1102
SFLE373384 SFV_1169SFV_0872SFV_1167SFV_1168SFV_1166SFV_0871SFV_0873
SFLE198214 AAN42770.1AAN42474.1AAN42768.1AAN42769.1AAN42767.1AAN42473.1AAN42475.1
SENT454169 SEHA_C1352SEHA_C1043SEHA_C1350SEHA_C1351SEHA_C1349SEHA_C1042SEHA_C1044
SENT321314 SCH_1186SCH_0899SCH_1184SCH_1185SCH_1183SCH_0898SCH_0900
SENT295319 SPA1615SPA1855SPA1617SPA1616SPA1618SPA1856SPA1854
SENT220341 STY1275STY0942STY1273STY1274STY1272STY0939STY0943
SENT209261 T1685T1989T1687T1686T1688T1990T1988
SDYS300267 SDY_2018SDY_2380SDY_2020SDY_2019SDY_2021SDY_2381SDY_2379
SDEN318161 SDEN_1833SDEN_1827SDEN_1828SDEN_1826SDEN_1832SDEN_1834
SDEG203122 SDE_1682SDE_1686SDE_1676SDE_1677SDE_1675SDE_1685SDE_1687
SBOY300268 SBO_1905SBO_0814SBO_1907SBO_1906SBO_1908SBO_0813SBO_0815
SBAL402882 SHEW185_2470SHEW185_2466SHEW185_2472SHEW185_2471SHEW185_2473SHEW185_2467SHEW185_2465
SBAL399599 SBAL195_2590SBAL195_2586SBAL195_2592SBAL195_2591SBAL195_2593SBAL195_2587SBAL195_2585
RSOL267608 RSC2724RSC2465RSC2723RSC2720RSC2466RSC2464
RMET266264 RMET_2959RMET_2893RMET_2958RMET_2956RMET_5818RMET_2892
REUT381666 H16_A3127H16_A3053H16_A3126H16_A3124H16_B0002H16_A3052
REUT264198 REUT_A2822REUT_A2753REUT_A2821REUT_A2819REUT_C6028REUT_A2752
PSYR223283 PSPTO_3357PSPTO_3354PSPTO_3359PSPTO_3358PSPTO_3360PSPTO_3355PSPTO_3353
PSYR205918 PSYR_3189PSYR_3184PSYR_3191PSYR_3190PSYR_3192PSYR_3185PSYR_3183
PSTU379731 PST_2303PST_2299PST_2305PST_2304PST_2306PST_2300PST_2298
PPUT76869 PPUTGB1_3618PPUTGB1_3614PPUTGB1_3620PPUTGB1_3619PPUTGB1_3621PPUTGB1_3615PPUTGB1_3613
PPUT351746 PPUT_1820PPUT_1824PPUT_1818PPUT_1819PPUT_1817PPUT_1823PPUT_1825
PPUT160488 PP_4013PP_4009PP_4015PP_4014PP_4016PP_4010PP_4008
PPRO298386 PBPRA1151PBPRA1146PBPRA1147PBPRA1145PBPRA1150PBPRA1152
PMEN399739 PMEN_2398PMEN_2394PMEN_2400PMEN_2399PMEN_2402PMEN_2395PMEN_2393
PLUM243265 PLU2803PLU1593PLU2805PLU2804PLU2806PLU1592PLU1594
PHAL326442 PSHAA1725PSHAA1691PSHAA1690PSHAA1692PSHAA1726PSHAA1724
PFLU220664 PFL_3890PFL_3886PFL_3892PFL_3891PFL_3893PFL_3887PFL_3885
PFLU216595 PFLU3810PFLU3806PFLU3812PFLU3811PFLU3813PFLU3807PFLU3805
PFLU205922 PFL_3595PFL_3591PFL_3597PFL_3596PFL_3598PFL_3592PFL_3590
PENT384676 PSEEN2201PSEEN2206PSEEN2199PSEEN2200PSEEN2198PSEEN2205PSEEN2207
PATL342610 PATL_2375PATL_2380PATL_2379PATL_2381PATL_2376PATL_2374
PAER208964 PA2625PA2621PA2627PA2626PA2629PA2622PA2620
PAER208963 PA14_30160PA14_30210PA14_30140PA14_30150PA14_30110PA14_30200PA14_30230
NMUL323848 NMUL_A2244NMUL_A2247NMUL_A2243NMUL_A2241NMUL_A2246NMUL_A2248
NEUT335283 NEUT_0259NEUT_2047NEUT_2336NEUT_0410NEUT_2046NEUT_2048
NEUR228410 NE0184NE1732NE0963NE1951NE1731NE1733
MSP400668 MMWYL1_3264MMWYL1_3261MMWYL1_3266MMWYL1_3265MMWYL1_3268MMWYL1_3262MMWYL1_3260
MPET420662 MPE_A3567MPE_A2462MPE_A3566MPE_A3624MPE_A2463MPE_A2461
MFLA265072 MFLA_2114MFLA_0509MFLA_2115MFLA_1819MFLA_2140MFLA_0508
MCAP243233 MCA_1786MCA_1788MCA_0201MCA_1785MCA_1784MCA_1789
MAQU351348 MAQU_1761MAQU_1758MAQU_1763MAQU_1762MAQU_1764MAQU_1759
LCHO395495 LCHO_0428LCHO_1663LCHO_0431LCHO_4111LCHO_1662LCHO_1664
KPNE272620 GKPORF_B0060GKPORF_B5353GKPORF_B0058GKPORF_B0059GKPORF_B0057GKPORF_B5352GKPORF_B2247
JSP375286 MMA_0374MMA_2515MMA_0373MMA_0359MMA_2516MMA_2514
ILOI283942 IL0675IL1311IL1310IL1312IL0676IL0674
HCHE349521 HCH_02334HCH_02338HCH_02332HCH_02333HCH_02331HCH_02337HCH_02339
HARS204773 HEAR0327HEAR2446HEAR0326HEAR0312HEAR2448HEAR2445
ESP42895 ENT638_1647ENT638_1398ENT638_1645ENT638_1646ENT638_1644ENT638_1397ENT638_1399
EFER585054 EFER_1796EFER_1029EFER_1798EFER_1797EFER_1799EFER_1028EFER_1030
ECOO157 Z1863YLJAYCFCYCFBPURBCSPDCLPA
ECOL83334 ECS1606ECS0967ECS1604ECS1605ECS1603ECS0966ECS0968
ECOL585397 ECED1_1278ECED1_0848ECED1_1276ECED1_1277ECED1_1275ECED1_0847ECED1_0849
ECOL585057 ECIAI39_2003ECIAI39_2270ECIAI39_2005ECIAI39_2004ECIAI39_2006ECIAI39_2272ECIAI39_2269
ECOL585056 ECUMN_1378ECUMN_1076ECUMN_1376ECUMN_1377ECUMN_1375ECUMN_1075ECUMN_1077
ECOL585055 EC55989_1247EC55989_0926EC55989_1245EC55989_1246EC55989_1244EC55989_0925EC55989_0927
ECOL585035 ECS88_1149ECS88_0903ECS88_1147ECS88_1148ECS88_1146ECS88_0902ECS88_0904
ECOL585034 ECIAI1_1172ECIAI1_0921ECIAI1_1170ECIAI1_1171ECIAI1_1169ECIAI1_0920ECIAI1_0922
ECOL481805 ECOLC_2469ECOLC_2715ECOLC_2471ECOLC_2470ECOLC_2472ECOLC_2716
ECOL469008 ECBD_2465ECBD_2713ECBD_2467ECBD_2466ECBD_2468ECBD_2714ECBD_2712
ECOL439855 ECSMS35_1991ECSMS35_2279ECSMS35_1993ECSMS35_1992ECSMS35_1994ECSMS35_2280ECSMS35_2278
ECOL413997 ECB_01132ECB_00886ECB_01130ECB_01131ECB_01129ECB_00885ECB_00887
ECOL409438 ECSE_1200ECSE_0939ECSE_1198ECSE_1199ECSE_1197ECSE_0938ECSE_0940
ECOL405955 APECO1_216APECO1_1214APECO1_214APECO1_215APECO1_213APECO1_1213
ECOL364106 UTI89_C1263UTI89_C0887UTI89_C1261UTI89_C1262UTI89_C1260UTI89_C0885UTI89_C0888
ECOL362663 ECP_1129ECP_0896ECP_1127ECP_1128ECP_1126ECP_0895ECP_0897
ECOL331111 ECE24377A_1297ECE24377A_0954ECE24377A_1295ECE24377A_1296ECE24377A_1294ECE24377A_0953ECE24377A_0955
ECOL316407 ECK1120:JW1120:B1134ECK0872:JW0865:B0881ECK1118:JW5165:B1132ECK1119:JW1119:B1133ECK1117:JW1117:B1131ECK0871:JW0864:B0880ECK0873:JW0866:B0882
ECOL199310 C1513C1018C1511C1512C1510C1017C1019
ECAR218491 ECA2441ECA2657ECA2443ECA2442ECA2444ECA2659ECA2656
DNOD246195 DNO_0139DNO_0656DNO_0629DNO_0627DNO_0667DNO_0655
DARO159087 DARO_3293DARO_3094DARO_3291DARO_3288DARO_3093DARO_3095
CVIO243365 CV_3401CV_3668CV_3402CV_3834CV_3667CV_3669
CSAL290398 CSAL_2443CSAL_2441CSAL_2445CSAL_2444CSAL_2446CSAL_1668CSAL_2440
CPSY167879 CPS_2899CPS_2894CPS_2901CPS_2900CPS_2902CPS_2895CPS_2893
CJAP155077 CJA_2484CJA_2569CJA_2491CJA_2490CJA_2492CJA_2570CJA_2568
BVIE269482 BCEP1808_0664BCEP1808_2597BCEP1808_0663BCEP1808_0632BCEP1808_2598BCEP1808_2596
BTHA271848 BTH_I1258BTH_I0762BTH_I1257BTH_I1221BTH_I2936BTH_I0763
BSP36773 BCEP18194_A3785BCEP18194_A5851BCEP18194_A3784BCEP18194_A3752BCEP18194_A5852BCEP18194_A5850
BPSE320373 BURPS668_3353BURPS668_0959BURPS668_3354BURPS668_3402BURPS668_3598BURPS668_0960
BPSE320372 BURPS1710B_A3670BURPS1710B_A1173BURPS1710B_A3671BURPS1710B_A3715BURPS1710B_A3897BURPS1710B_A1174
BPSE272560 BPSL2888BPSL0898ABPSL2889BPSL2928BPSL3079BPSL0899
BMAL320389 BMA10247_2545BMA10247_2157BMA10247_2544BMA10247_2627BMA10247_3184BMA10247_2158
BMAL320388 BMASAVP1_A0279BMASAVP1_A0575BMASAVP1_A0278BMASAVP1_A0358BMASAVP1_A0574BMASAVP1_A0576
BMAL243160 BMA_2365BMA_2280BMA_2364BMA_2442BMA_2791BMA_2281
BCEN331272 BCEN2424_0699BCEN2424_2519BCEN2424_0698BCEN2424_0666BCEN2424_2520BCEN2424_2518
BCEN331271 BCEN_0215BCEN_1908BCEN_0214BCEN_0183BCEN_1909BCEN_1907
BAMB398577 BAMMC406_0618BAMMC406_2437BAMMC406_0617BAMMC406_0587BAMMC406_2438BAMMC406_2436
BAMB339670 BAMB_0592BAMB_2567BAMB_0591BAMB_0561BAMB_0408BAMB_2566
ASP76114 EBA990EBD83EBA986EBA1420EBC12EBA4477
ASP62977 ACIAD1222ACIAD1362ACIAD1220ACIAD1221ACIAD1219ACIAD1363
ASP62928 AZO2774AZO1133AZO2772AZO0901AZO1134AZO1132
ASAL382245 ASA_1392ASA_2447ASA_1390ASA_1391ASA_1389ASA_2448ASA_2446
AHYD196024 AHA_1416AHA_1856AHA_1414AHA_1415AHA_1413AHA_1855AHA_1857
AFER243159 AFE_0923AFE_2517AFE_2123AFE_2360AFE_0746AFE_2450AFE_2518
AEHR187272 MLG_1450MLG_1448MLG_1452MLG_1451MLG_1358MLG_1447
ABOR393595 ABO_1276ABO_1284ABO_1274ABO_1275ABO_1273ABO_1283ABO_1285


Organism features enriched in list (features available for 130 out of the 136 orgs in the list)
Feature    Pvalue       Num occurrences in list  Total num occurrences  
Arrangment:Chains 2.103e-6592
Disease:Bubonic_plague 0.000112266
Disease:Dysentery 0.000112266
Disease:Gastroenteritis 0.00003251013
Endospores:No 3.661e-626211
GC_Content_Range4:0-40 4.605e-272213
GC_Content_Range4:40-60 1.019e-1285224
GC_Content_Range4:60-100 0.004864343145
GC_Content_Range7:30-40 3.016e-192166
GC_Content_Range7:50-60 1.041e-1152107
GC_Content_Range7:60-70 0.000943443134
Genome_Size_Range5:0-2 4.184e-191155
Genome_Size_Range5:2-4 1.548e-917197
Genome_Size_Range5:4-6 2.235e-2389184
Genome_Size_Range5:6-10 0.00001772347
Genome_Size_Range9:1-2 3.864e-151128
Genome_Size_Range9:2-3 1.572e-69120
Genome_Size_Range9:3-4 0.0023089877
Genome_Size_Range9:4-5 3.665e-84396
Genome_Size_Range9:5-6 1.004e-114688
Genome_Size_Range9:6-8 7.191e-72238
Gram_Stain:Gram_Neg 4.521e-22119333
Habitat:Multiple 0.001537953178
Motility:No 1.710e-117151
Motility:Yes 1.313e-1599267
Optimal_temp.:- 0.008143168257
Oxygen_Req:Anaerobic 2.469e-102102
Oxygen_Req:Facultative 1.125e-1076201
Pathogenic_in:No 0.000055632226
Pathogenic_in:Plant 0.00002581115
Shape:Coccus 6.648e-8282
Shape:Rod 5.015e-16115347
Temp._range:Mesophilic 0.0004086118473
Temp._range:Thermophilic 0.0011684135



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ORGANISMS CONTAINING AT MOST 1 GENES FROM THE GROUP:

Total number of orgs: 151
Effective number of orgs (counting one per cluster within 468 clusters): 123

Organism list
Homologs in each organism in the list
Features enriched in organism list


Follow (ncbi) link, when present, to find the set of organism features for each organism
Org ID  Org Name  # genes in group found in org  
UURE95667 Ureaplasma urealyticum serovar 131
UURE95664 Ureaplasma urealyticum serovar 101
UPAR505682 ncbi Ureaplasma parvum serovar 3 str. ATCC 278151
UMET351160 ncbi uncultured methanogenic archaeon RC-I0
TWHI218496 ncbi Tropheryma whipplei TW08/271
TWHI203267 ncbi Tropheryma whipplei Twist1
TVOL273116 ncbi Thermoplasma volcanium GSS11
TROS309801 ncbi Thermomicrobium roseum DSM 51591
TPSE340099 ncbi Thermoanaerobacter pseudethanolicus ATCC 332231
TPEN368408 ncbi Thermofilum pendens Hrk 51
TPAL243276 ncbi Treponema pallidum pallidum Nichols1
TKOD69014 ncbi Thermococcus kodakarensis KOD11
TACI273075 ncbi Thermoplasma acidophilum DSM 17281
SSP84588 ncbi Synechococcus sp. WH 81020
SSP64471 ncbi Synechococcus sp. CC93111
SSP1148 ncbi Synechocystis sp. PCC 68031
SSP1131 Synechococcus sp. CC96051
SMAR399550 ncbi Staphylothermus marinus F11
RTYP257363 ncbi Rickettsia typhi Wilmington0
RRIC452659 ncbi Rickettsia rickettsii Iowa0
RRIC392021 ncbi Rickettsia rickettsii Sheila Smith0
RPRO272947 ncbi Rickettsia prowazekii Madrid E0
RMAS416276 ncbi Rickettsia massiliae MTU50
RFEL315456 ncbi Rickettsia felis URRWXCal21
RCON272944 ncbi Rickettsia conorii Malish 71
RBEL391896 ncbi Rickettsia bellii OSU 85-3891
RBEL336407 ncbi Rickettsia bellii RML369-C1
RAKA293614 ncbi Rickettsia akari Hartford0
PTOR263820 ncbi Picrophilus torridus DSM 97901
PMAR93060 ncbi Prochlorococcus marinus MIT 92150
PMAR74546 ncbi Prochlorococcus marinus MIT 93121
PMAR59920 ncbi Prochlorococcus marinus NATL2A1
PMAR167555 ncbi Prochlorococcus marinus NATL1A1
PMAR167546 ncbi Prochlorococcus marinus MIT 93010
PMAR167542 ncbi Prochlorococcus marinus MIT 95150
PMAR167540 Prochlorococcus marinus pastoris MED4ax1
PMAR167539 ncbi Prochlorococcus marinus marinus CCMP13751
PMAR146891 ncbi Prochlorococcus marinus AS96010
PINT246198 Prevotella intermedia 171
PHOR70601 ncbi Pyrococcus horikoshii OT31
PGIN242619 ncbi Porphyromonas gingivalis W831
PFUR186497 ncbi Pyrococcus furiosus DSM 36381
PAST100379 Onion yellows phytoplasma1
PACN267747 ncbi Propionibacterium acnes KPA1712020
PABY272844 ncbi Pyrococcus abyssi GE51
OTSU357244 ncbi Orientia tsutsugamushi Boryong0
NSP35761 Nocardioides sp.1
NPHA348780 ncbi Natronomonas pharaonis DSM 21601
MVAN350058 ncbi Mycobacterium vanbaalenii PYR-11
MTUB419947 ncbi Mycobacterium tuberculosis H37Ra1
MTUB336982 ncbi Mycobacterium tuberculosis F111
MTHE349307 ncbi Methanosaeta thermophila PT1
MTBRV ncbi Mycobacterium tuberculosis H37Rv1
MTBCDC ncbi Mycobacterium tuberculosis CDC15511
MSYN262723 ncbi Mycoplasma synoviae 531
MSTA339860 ncbi Methanosphaera stadtmanae DSM 30911
MSP189918 ncbi Mycobacterium sp. KMS1
MSP164757 ncbi Mycobacterium sp. JLS1
MSP164756 ncbi Mycobacterium sp. MCS1
MSME246196 ncbi Mycobacterium smegmatis MC2 1551
MSED399549 ncbi Metallosphaera sedula DSM 53481
MPUL272635 ncbi Mycoplasma pulmonis UAB CTIP1
MPNE272634 ncbi Mycoplasma pneumoniae M1290
MPEN272633 ncbi Mycoplasma penetrans HF-21
MMYC272632 ncbi Mycoplasma mycoides mycoides SC str. PG11
MMOB267748 ncbi Mycoplasma mobile 163K1
MMAZ192952 ncbi Methanosarcina mazei Go11
MMAR444158 ncbi Methanococcus maripaludis C61
MMAR426368 ncbi Methanococcus maripaludis C71
MMAR402880 ncbi Methanococcus maripaludis C50
MMAR368407 ncbi Methanoculleus marisnigri JR10
MMAR267377 ncbi Methanococcus maripaludis S21
MLEP272631 ncbi Mycobacterium leprae TN1
MLAB410358 ncbi Methanocorpusculum labreanum Z0
MKAN190192 ncbi Methanopyrus kandleri AV191
MJAN243232 ncbi Methanocaldococcus jannaschii DSM 26611
MHYO295358 ncbi Mycoplasma hyopneumoniae 2321
MHYO262722 ncbi Mycoplasma hyopneumoniae 74481
MHYO262719 ncbi Mycoplasma hyopneumoniae J1
MHUN323259 ncbi Methanospirillum hungatei JF-11
MGEN243273 ncbi Mycoplasma genitalium G371
MFLO265311 ncbi Mesoplasma florum L11
MCAP340047 ncbi Mycoplasma capricolum capricolum ATCC 273431
MBUR259564 ncbi Methanococcoides burtonii DSM 62420
MBOV410289 ncbi Mycobacterium bovis BCG str. Pasteur 1173P21
MBOV233413 ncbi Mycobacterium bovis AF2122/971
MBAR269797 ncbi Methanosarcina barkeri Fusaro1
MAVI243243 ncbi Mycobacterium avium 1041
MART243272 ncbi Mycoplasma arthritidis 158L3-11
MAEO419665 ncbi Methanococcus aeolicus Nankai-31
MACE188937 ncbi Methanosarcina acetivorans C2A1
LXYL281090 ncbi Leifsonia xyli xyli CTCB071
LWEL386043 ncbi Listeria welshimeri serovar 6b str. SLCC53341
LMON265669 ncbi Listeria monocytogenes 4b F23651
LMON169963 ncbi Listeria monocytogenes EGD-e1
LINN272626 ncbi Listeria innocua Clip112621
HWAL362976 ncbi Haloquadratum walsbyi DSM 167901
HSP64091 ncbi Halobacterium sp. NRC-11
HSAL478009 ncbi Halobacterium salinarum R11
HPYL85963 ncbi Helicobacter pylori J991
HPYL357544 ncbi Helicobacter pylori HPAG11
HPY ncbi Helicobacter pylori 266951
HMUK485914 ncbi Halomicrobium mukohataei DSM 122861
HMAR272569 ncbi Haloarcula marismortui ATCC 430491
HBUT415426 ncbi Hyperthermus butylicus DSM 54561
HACI382638 ncbi Helicobacter acinonychis Sheeba1
FNUC190304 ncbi Fusobacterium nucleatum nucleatum ATCC 255861
ERUM302409 ncbi Ehrlichia ruminantium Gardel1
ERUM254945 ncbi Ehrlichia ruminantium Welgevonden1
ECHA205920 ncbi Ehrlichia chaffeensis Arkansas1
ECAN269484 ncbi Ehrlichia canis Jake1
DSP255470 ncbi Dehalococcoides sp. CBDB11
DSP216389 ncbi Dehalococcoides sp. BAV11
DETH243164 ncbi Dehalococcoides ethenogenes 1951
CTRA471473 ncbi Chlamydia trachomatis L2b/UCH-1/proctitis1
CTRA471472 ncbi Chlamydia trachomatis 434/Bu1
CSUL444179 ncbi Candidatus Sulcia muelleri GWSS0
CPNE182082 ncbi Chlamydophila pneumoniae TW-1831
CPNE138677 ncbi Chlamydophila pneumoniae J1381
CPNE115713 ncbi Chlamydophila pneumoniae CWL0291
CPNE115711 ncbi Chlamydophila pneumoniae AR391
CPEL335992 ncbi Candidatus Pelagibacter ubique HTCC10620
CMUR243161 ncbi Chlamydia muridarum Nigg1
CMET456442 ncbi Candidatus Methanoregula boonei 6A80
CMAQ397948 ncbi Caldivirga maquilingensis IC-1671
CJEI306537 ncbi Corynebacterium jeikeium K4111
CHUT269798 ncbi Cytophaga hutchinsonii ATCC 334061
CHOM360107 ncbi Campylobacter hominis ATCC BAA-3811
CGLU196627 ncbi Corynebacterium glutamicum ATCC 130320
CFEL264202 ncbi Chlamydophila felis Fe/C-561
CEFF196164 ncbi Corynebacterium efficiens YS-3141
CDES477974 ncbi Candidatus Desulforudis audaxviator MP104C1
CCUR360105 ncbi Campylobacter curvus 525.920
CCON360104 ncbi Campylobacter concisus 138260
CCAV227941 ncbi Chlamydophila caviae GPIC1
CABO218497 ncbi Chlamydophila abortus S26/31
BXEN266265 ncbi Burkholderia xenovorans LB4001
BTUR314724 ncbi Borrelia turicatae 91E1350
BLON206672 ncbi Bifidobacterium longum NCC27051
BHER314723 ncbi Borrelia hermsii DAH0
BGAR290434 ncbi Borrelia garinii PBi1
BCLA66692 ncbi Bacillus clausii KSM-K161
BBUR224326 ncbi Borrelia burgdorferi B311
BAFZ390236 ncbi Borrelia afzelii PKo1
AYEL322098 ncbi Aster yellows witches-broom phytoplasma AYWB1
AURANTIMONAS Aurantimonas manganoxydans SI85-9A10
APHA212042 ncbi Anaplasma phagocytophilum HZ1
APER272557 ncbi Aeropyrum pernix K11
AMAR234826 ncbi Anaplasma marginale St. Maries1
ALAI441768 ncbi Acholeplasma laidlawii PG-8A1
AFUL224325 ncbi Archaeoglobus fulgidus DSM 43041


Names of the homologs of the genes in the group in each of these orgs
  G6580   G6463   EG11345   EG11344   EG11314   EG11111   EG10156   
UURE95667 UU402
UURE95664 UUR10_0445
UPAR505682 UPA3_0418
UMET351160
TWHI218496 TW0766
TWHI203267 TW791
TVOL273116 TVN0999
TROS309801 TRD_0745
TPSE340099 TETH39_1049
TPEN368408 TPEN_1656
TPAL243276 TP_0801
TKOD69014 TK0561
TACI273075 TA0523
SSP84588
SSP64471 GSYN2022
SSP1148 SLL0844
SSP1131 SYNCC9605_0877
SMAR399550 SMAR_1194
RTYP257363
RRIC452659
RRIC392021
RPRO272947
RMAS416276
RFEL315456 RF_0496
RCON272944 RC0410
RBEL391896 A1I_07620
RBEL336407 RBE_1372
RAKA293614
PTOR263820 PTO0816
PMAR93060
PMAR74546 PMT9312_1099
PMAR59920 PMN2A_0660
PMAR167555 NATL1_14921
PMAR167546
PMAR167542
PMAR167540 PMM1088
PMAR167539 PRO_1107
PMAR146891
PINT246198 PIN_A1153
PHOR70601 PH0852
PGIN242619 PG_1123
PFUR186497 PF0667
PAST100379 PAM125
PACN267747
PABY272844 PAB0829
OTSU357244
NSP35761 NOCA_4269
NPHA348780 NP1658A
MVAN350058 MVAN_1040
MTUB419947 MRA_3683
MTUB336982 TBFG_13677
MTHE349307 MTHE_1218
MTBRV RV3648C
MTBCDC MT3750.1
MSYN262723 MS53_0375
MSTA339860 MSP_1247
MSP189918 MKMS_2342
MSP164757 MJLS_2334
MSP164756 MMCS_2295
MSME246196 MSMEG_6159
MSED399549 MSED_0018
MPUL272635 MYPU_5580
MPNE272634
MPEN272633 MYPE8250
MMYC272632 MSC_0447
MMOB267748 MMOB4400
MMAZ192952 MM0920
MMAR444158 MMARC6_1684
MMAR426368 MMARC7_0216
MMAR402880
MMAR368407
MMAR267377 MMP0971
MLEP272631 ML0198
MLAB410358
MKAN190192 MK1085
MJAN243232 MJ_0929
MHYO295358 MHP433
MHYO262722 MHP7448_0430
MHYO262719 MHJ_0428
MHUN323259 MHUN_0824
MGEN243273 MG_295
MFLO265311 MFL412
MCAP340047 MCAP_0523
MBUR259564
MBOV410289 BCG_3706C
MBOV233413 MB3672C
MBAR269797 MBAR_A0697
MAVI243243 MAV_0852
MART243272 MART0166
MAEO419665 MAEO_0986
MACE188937 MA3990
LXYL281090 LXX25100
LWEL386043 LWE1525
LMON265669 LMOF2365_1531
LMON169963 LMO1512
LINN272626 LIN1547
HWAL362976 HQ1662A
HSP64091 VNG0415G
HSAL478009 OE1623F
HPYL85963 JHP0028
HPYL357544 HPAG1_0030
HPY HP0032
HMUK485914 HMUK_3158
HMAR272569 RRNAC0192
HBUT415426 HBUT_1424
HACI382638 HAC_0045
FNUC190304 FN0765
ERUM302409 ERGA_CDS_06620
ERUM254945 ERWE_CDS_06710
ECHA205920 ECH_0567
ECAN269484 ECAJ_0464
DSP255470 CBDBA70
DSP216389 DEHABAV1_0051
DETH243164 DET_0057
CTRA471473 CTLON_0535
CTRA471472 CTL0539
CSUL444179
CPNE182082 CPB0453
CPNE138677 CPJ0438
CPNE115713 CPN0438
CPNE115711 CP_0315
CPEL335992
CMUR243161 TC_0560
CMET456442
CMAQ397948 CMAQ_0020
CJEI306537 JK1955
CHUT269798 CHU_1563
CHOM360107 CHAB381_1113
CGLU196627
CFEL264202 CF0653
CEFF196164 CE2613
CDES477974 DAUD_0181
CCUR360105
CCON360104
CCAV227941 CCA_00354
CABO218497 CAB345
BXEN266265 BXE_B2951
BTUR314724
BLON206672 BL1800
BHER314723
BGAR290434 BG0705
BCLA66692 ABC1586
BBUR224326 BB_0682
BAFZ390236 BAPKO_0726
AYEL322098 AYWB_597
AURANTIMONAS
APHA212042 APH_0450
APER272557 APE2080
AMAR234826 AM731
ALAI441768 ACL_0559
AFUL224325 AF_2242


Organism features enriched in list (features available for 143 out of the 151 orgs in the list)
Feature    Pvalue       Num occurrences in list  Total num occurrences  
Arrangment:Aggregates 0.007472569
Arrangment:Chains 5.481e-6792
Arrangment:Pairs 7.288e-79112
Arrangment:Singles 0.003619583286
Disease:Pharyngitis 0.000011388
Disease:bronchitis_and_pneumonitis 0.000011388
Endospores:No 3.200e-777211
Endospores:Yes 0.0000270253
GC_Content_Range4:0-40 0.000017973213
GC_Content_Range4:40-60 0.007490144224
GC_Content_Range4:60-100 0.008933126145
GC_Content_Range7:0-30 3.671e-72747
GC_Content_Range7:50-60 0.000276913107
Genome_Size_Range5:0-2 2.033e-2689155
Genome_Size_Range5:2-4 0.001919935197
Genome_Size_Range5:4-6 2.119e-1115184
Genome_Size_Range5:6-10 0.0027698447
Genome_Size_Range9:0-1 3.355e-82027
Genome_Size_Range9:1-2 1.043e-1669128
Genome_Size_Range9:3-4 0.0015889977
Genome_Size_Range9:4-5 0.00031441196
Genome_Size_Range9:5-6 9.249e-8488
Genome_Size_Range9:6-8 0.0055010338
Gram_Stain:Gram_Neg 0.000011760333
Habitat:Aquatic 0.00808833191
Habitat:Host-associated 9.031e-672206
Habitat:Multiple 5.888e-1016178
Habitat:Terrestrial 0.0013423131
Motility:No 0.008292547151
Motility:Yes 0.000462649267
Optimal_temp.:37 0.000023443106
Oxygen_Req:Anaerobic 0.002478236102
Oxygen_Req:Facultative 5.795e-726201
Shape:Coccus 0.00814681282
Shape:Irregular_coccus 1.166e-91617
Shape:Pleomorphic 0.003269968
Shape:Rod 5.127e-760347
Shape:Sphere 3.997e-81619
Temp._range:Hyperthermophilic 0.00247061223



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ORGANISMS ENRICHED FOR GROUP:




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ORGANISMS DEPLETED FOR GROUP:




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PHYLOGENETIC PROFILE SIMILARITY WITH KNOWN PATHWAYS:

Pathways or complexes with absolute value of Pearson coefficient with respect to candidate larger than 0.4 are listed below
The candidate is assumed to exist in orgs listed in section List of organisms containing most genes from the group


Pathway or complex  # Orgs containing it  # of those orgs also containing candidate  Pearson Coeff  
AST-PWY (arginine degradation II (AST pathway))120950.6779
COBALSYN-PWY (adenosylcobalamin salvage from cobinamide I)1951180.6321
GLYCOCAT-PWY (glycogen degradation I)2461300.6065
PWY0-1241 (ADP-L-glycero-β-D-manno-heptose biosynthesis)2181200.5899
KDO-LIPASYN-PWY (KDO2-lipid A biosynthesis I)2251170.5491
LIPA-CORESYN-PWY (Lipid A-core biosynthesis)1761020.5487
PWY-5918 (heme biosynthesis I)2721280.5376
PWY-5755 (4-hydroxybenzoate biosynthesis II (bacteria and fungi))81640.5351
PWY-5111 (CMP-KDO biosynthesis II (from D-arabinose 5-phosphate))3001340.5328
GALACTITOLCAT-PWY (galactitol degradation)73600.5324
PWY-5148 (acyl-CoA hydrolysis)2271150.5284
GLUCONSUPER-PWY (D-gluconate degradation)2291150.5239
PWY-4041 (γ-glutamyl cycle)2791270.5165
PWY0-981 (taurine degradation IV)106730.5156
3-HYDROXYPHENYLACETATE-DEGRADATION-PWY (4-hydroxyphenylacetate degradation)149890.5144
PWY0-1182 (trehalose degradation II (trehalase))70570.5133
ENTNER-DOUDOROFF-PWY (Entner-Doudoroff pathway I)2491190.5128
GLYCOLYSIS-E-D (superpathway of glycolysis and Entner-Doudoroff)2491190.5128
PHOSLIPSYN-PWY (phospholipid biosynthesis I)2901290.5117
HEME-BIOSYNTHESIS-II (heme biosynthesis from uroporphyrinogen-III I)2861280.5113
PWY4FS-7 (phosphatidylglycerol biosynthesis I (plastidic))2911290.5099
PWY0-1319 (CDP-diacylglycerol biosynthesis II)2961300.5088
PWY-5386 (methylglyoxal degradation I)3051310.5007
ECASYN-PWY (enterobacterial common antigen biosynthesis)1911010.4998
PWY-1269 (CMP-KDO biosynthesis I)3251350.4982
GLUCARDEG-PWY (D-glucarate degradation I)152880.4960
PWY0-1329 (succinate to cytochrome bo oxidase electron transfer)96670.4955
GLUTATHIONESYN-PWY (glutathione biosynthesis)3391360.4837
NAGLIPASYN-PWY (lipid IVA biosynthesis)3481350.4619
LIPASYN-PWY (phospholipases)2121020.4570
PWY-5913 (TCA cycle variation IV)3011230.4455
TYRFUMCAT-PWY (tyrosine degradation I)184920.4415
PWY0-541 (cyclopropane fatty acid (CFA) biosynthesis)3001220.4395
GLUCARGALACTSUPER-PWY (superpathway of D-glucarate and D-galactarate degradation)135760.4388
P184-PWY (protocatechuate degradation I (meta-cleavage pathway))94600.4286
PWY-6134 (tyrosine biosynthesis IV)89580.4283
SULFATE-CYS-PWY (superpathway of sulfate assimilation and cysteine biosynthesis)3651330.4206
PWY0-1335 (NADH to cytochrome bo oxidase electron transfer)112660.4204
THREONINE-DEG2-PWY (threonine degradation II)214980.4196
LPSSYN-PWY (superpathway of lipopolysaccharide biosynthesis)91580.4196
PWY-5857 (ubiquinone-10 biosynthesis (prokaryotic))183890.4185
GDPRHAMSYN-PWY (GDP-D-rhamnose biosynthesis)156800.4121
CHOLINE-BETAINE-ANA-PWY (choline degradation I)135730.4105
BETSYN-PWY (glycine betaine biosynthesis I (Gram-negative bacteria))138740.4105
PWY-46 (putrescine biosynthesis III)138740.4105
GALACTARDEG-PWY (D-galactarate degradation I)151780.4084
PWY-6196 (serine racemization)102610.4067
PWY0-845 (superpathway of pyridoxal 5'-phosphate biosynthesis and salvage)3291240.4061
PWY-561 (superpathway of glyoxylate cycle)162810.4042
GLYOXYLATE-BYPASS (glyoxylate cycle)169830.4030
PWY-5861 (superpathway of demethylmenaquinone-8 biosynthesis)50390.4017



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PAIRWISE GENOME CONTEXT SCORE MATRIX:

  G6463   EG11345   EG11344   EG11314   EG11111   EG10156   
G65800.9988180.9994720.9996640.9993390.99860.998641
G64630.9991230.9990620.9987380.9997020.999953
EG113450.9996960.9996640.9988240.999054
EG113440.9996110.9987480.998822
EG113140.998540.998599
EG111110.999609
EG10156



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PAIRWISE BLAST SCORES:

  G6580   G6463   EG11345   EG11344   EG11314   EG11111   EG10156   
G65800.0f0------
G6463-0.0f0-----
EG11345--0.0f0----
EG11344---0.0f0---
EG11314----0.0f0--
EG11111-----0.0f0-
EG10156------0.0f0



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PATHWAYS OR PROTEIN COMPLEX MATCHES IN TARGET ORG:

For each case, all genes involved in the pathway or complex are listed. For each gene we list: a tag indicating whether the gene is part of the candidate list or not, the average and the minimum scores of the gene to the candidate list, the gene name, and its product names.



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GENOME CONTEXT INFORMATION:

Each row corresponds to a replicon in an organism, each column to a gene in the candidate. The second column indicates whether the organims was included in the list used to compute the genome context scores or not. Some organisms are not included because they are phylogenetically too similar to others already in the list.
The number in the matrix indicate the position of the homolog of the gene in the replicon. All numbers are relative to the smaller one, which is assigned a position of zero. Two columns with the same number indicate that the two genes matched the same gene in that organism.

Genome browser links for gene clusters

The links below opens a genome browser BioCyc page for each cluster of genes in the target genome. These pages shows the central gene of the cluster in the target genome and its best homolog in the reference genomes, for the genomes that contain homologs for at least 75% of the genes in the group. Only one genome per phylogenetic cluster of organisms is shown, to keep the list smaller.

EG11314 EG11344 EG11345 G6580 (centered at EG11344)
EG10156 EG11111 G6463 (centered at G6463)


ORG:REPLICON:CIRC?\GENE  IN REF LIST  G6580   G6463   EG11345   EG11344   EG11314   EG11111   EG10156   
233/623279/623124/623387/623407/623216/623363/623
AAEO224324:0:Tyes0---315-799
AAUR290340:2:Tyes----36519870
AAVE397945:0:Tyes14571-14561404-0
ABAC204669:0:Tyes0---161328572239
ABAU360910:0:Tyes-3-625940
ABOR393595:0:Tyes3111201012
ABUT367737:0:Tyes-1432-0--1431
ACAU438753:0:Tyes-0----1
ACEL351607:0:Tyes-1469----0
ACRY349163:8:Tyes-0--479-1
ADEH290397:0:Tyes9991--3222000
AEHR187272:0:Tyes929094930-89
AFER243159:0:Tyes175174913621594016831750
AFUL224325:0:Tyes----0--
AHYD196024:0:Tyes3435120434436
ALAI441768:0:Tyes---0---
AMAR234826:0:Tyes------0
AMAR329726:9:Tyes---3900--
AMET293826:0:Tyes---2005-0-
ANAE240017:0:Tyes415---552-0
AORE350688:0:Tyes---428-15680
APER272557:0:Tyes0------
APHA212042:0:Tyes------0
APLE416269:0:Tyes172-6690668--
APLE434271:0:Tno179-6420641--
ASAL382245:5:Tyes3102012010211019
ASP1667:3:Tyes652---39033060
ASP232721:2:Tyes21980-21922149-1
ASP62928:0:Tyes1912246-19100247245
ASP62977:0:Tyes3140120-141
ASP76114:2:Tyes22048-025820502047
AVAR240292:3:Tyes---3939--0
AYEL322098:4:Tyes---0---
BABO262698:1:Tno0464--168-463
BAFZ390236:2:Fyes---0---
BAMB339670:3:Tno1962223-19516402222
BAMB398577:3:Tno311878-30018791877
BAMY326423:0:Tyes---2345572-0
BANT260799:0:Tno---4251227-0
BANT261594:2:Tno---4184189-0
BANT568206:2:Tyes---4420200-0
BANT592021:2:Tno---4409200-0
BAPH198804:0:Tyes---01216-
BAPH372461:0:Tyes---0-139-
BBAC264462:0:Tyes8791--625-0
BBAC360095:0:Tyes-0--258-1
BBRO257310:0:Tyes-70-036973
BBUR224326:21:Fno---0---
BCAN483179:1:Tno0492--174-491
BCEN331271:2:Tno331751-32017521750
BCEN331272:3:Tyes331850-32018511849
BCER226900:1:Tyes3499--4204221-0
BCER288681:0:Tno---4112224-0
BCER315749:1:Tyes3289--2881181-0
BCER405917:1:Tyes---4167228-0
BCER572264:1:Tno---4244195-0
BCIC186490:0:Tyes---1521530-
BCLA66692:0:Tyes---0---
BFRA272559:1:Tyes---02423--
BFRA295405:0:Tno---02648--
BGAR290434:2:Fyes---0---
BHAL272558:0:Tyes---6550--
BHEN283166:0:Tyes-0----707
BJAP224911:0:Fyes-3773----0
BLIC279010:0:Tyes4102--26915714550
BLON206672:0:Tyes----0--
BMAL243160:1:Tno840-831514721
BMAL320388:1:Tno1294-080293295
BMAL320389:1:Tyes3820-38146410091
BMEL224914:1:Tno-0--310-1
BMEL359391:1:Tno0448--162-447
BOVI236:1:Tyes0422--161-421
BPAR257311:0:Tno-70-036973
BPER257313:0:Tyes-3-12312040
BPET94624:0:Tyes-3-726940
BPSE272560:1:Tyes20050-2006204521961
BPSE320372:1:Tno23740-2375241925941
BPSE320373:1:Tno23010-2302235025391
BPUM315750:0:Tyes---17910--
BQUI283165:0:Tyes-0--36-354
BSP107806:2:Tyes--102225-
BSP36773:2:Tyes342141-33021422140
BSP376:0:Tyes-1----0
BSUB:0:Tyes---2820612-0
BSUI204722:1:Tyes0489--175-488
BSUI470137:1:Tno0504--182-503
BTHA271848:1:Tno4880-48745121271
BTHE226186:0:Tyes---03791-758
BTHU281309:1:Tno---4012178-0
BTHU412694:1:Tno---3762211-0
BTRI382640:1:Tyes-0----1
BVIE269482:7:Tyes321948-31019491947
BWEI315730:4:Tyes---414723635130
BXEN266265:1:Tyes-----0-
CABO218497:0:Tyes---0---
CACE272562:1:Tyes-1011-1413-01012
CAULO:0:Tyes02236----616
CBEI290402:0:Tyes-2983-0--2982
CBLO203907:0:Tyes---01--
CBLO291272:0:Tno---0157-
CBOT36826:1:Tno---0--595
CBOT441770:0:Tyes---0--661
CBOT441771:0:Tno---0--603
CBOT441772:1:Tno---0--678
CBOT498213:1:Tno---0--609
CBOT508765:1:Tyes---416--0
CBOT515621:2:Tyes---0--616
CBOT536232:0:Tno0--99--730
CBUR227377:1:Tyes---3020-348
CBUR360115:1:Tno---1580-199
CBUR434922:2:Tno---3410-378
CCAV227941:1:Tyes---0---
CCHL340177:0:Tyes---0--1240
CDES477974:0:Tyes------0
CDIF272563:1:Tyes---1287-13630
CDIP257309:0:Tyes-----01655
CEFF196164:0:Fyes------0
CFEL264202:1:Tyes---0---
CFET360106:0:Tyes-1----0
CHOM360107:1:Tyes-0-----
CHUT269798:0:Tyes----0--
CHYD246194:0:Tyes---10960-1239
CJAP155077:0:Tyes0847688583
CJEI306537:0:Tyes-----0-
CJEJ192222:0:Tyes-1044--0-1045
CJEJ195099:0:Tno-1188--0-1189
CJEJ354242:2:Tyes-1030--0-1031
CJEJ360109:0:Tyes-548--0-547
CJEJ407148:0:Tno-1060--0-1061
CKLU431943:1:Tyes-1241-0--1240
CKOR374847:0:Tyes0---1026--
CMAQ397948:0:Tyes----0--
CMIC31964:2:Tyes----14060-
CMIC443906:2:Tyes----13680-
CMUR243161:1:Tyes---0---
CNOV386415:0:Tyes---1183--0
CPER195102:1:Tyes---355--0
CPER195103:0:Tno---349--0
CPER289380:3:Tyes---331--0
CPHY357809:0:Tyes---2327-0-
CPNE115711:1:Tyes---0---
CPNE115713:0:Tno---0---
CPNE138677:0:Tno---0---
CPNE182082:0:Tno---0---
CPRO264201:0:Fyes0--1340---
CPSY167879:0:Tyes6187920
CRUT413404:0:Tyes-15810231-157
CSAL290398:0:Tyes7897877917907920786
CSP501479:7:Fyes------0
CSP501479:8:Fyes-0--2266--
CSP78:2:Tyes-0----1
CTEP194439:0:Tyes----788-0
CTET212717:0:Tyes---0--1067
CTRA471472:0:Tyes---0---
CTRA471473:0:Tno---0---
CVES412965:0:Tyes--10188-121
CVIO243365:0:Tyes0280-1447279281
DARO159087:0:Tyes2021-20019702
DDES207559:0:Tyes-1----0
DETH243164:0:Tyes------0
DGEO319795:1:Tyes1340779-1040-780
DHAF138119:0:Tyes0---3544-1265
DNOD246195:0:Tyes0506478477517-505
DOLE96561:0:Tyes-638--0-637
DPSY177439:2:Tyes-1---750
DRAD243230:3:Tyes036-1190--38
DRED349161:0:Tyes---5982201-0
DSHI398580:5:Tyes----0-1104
DSP216389:0:Tyes------0
DSP255470:0:Tno------0
DVUL882:1:Tyes6370----1
ECAN269484:0:Tyes------0
ECAR218491:0:Tyes0216213218215
ECHA205920:0:Tyes------0
ECOL199310:0:Tno476147447547302
ECOL316407:0:Tno254125225325102
ECOL331111:6:Tno330132832932702
ECOL362663:0:Tno233123123223002
ECOL364106:1:Tno378237637737503
ECOL405955:2:Tyes2620260261259-1
ECOL409438:6:Tyes265126326426202
ECOL413997:0:Tno249124724824602
ECOL439855:4:Tno0284213285283
ECOL469008:0:Tno0250213251249
ECOL481805:0:Tno0246213247-
ECOL585034:0:Tno252125025124902
ECOL585035:0:Tno238123623723502
ECOL585055:0:Tno324132232332102
ECOL585056:2:Tno304130230330102
ECOL585057:0:Tno0268213270267
ECOL585397:0:Tno435143343443202
ECOL83334:0:Tno650164864964702
ECOLI:0:Tno255125325425202
ECOO157:0:Tno707170570670402
EFAE226185:3:Tyes787--121414940-
EFER585054:1:Tyes759176176076202
ELIT314225:0:Tyes-0----605
ERUM254945:0:Tyes------0
ERUM302409:0:Tno------0
ESP42895:1:Tyes252125025124902
FALN326424:0:Tyes1798858--590905922
FJOH376686:0:Tyes-1117-02624--
FMAG334413:1:Tyes---74--0
FNOD381764:0:Tyes-----13910
FNUC190304:0:Tyes---0---
FPHI484022:1:Tyes0--367---
FRANT:0:Tno0--1196---
FSP106370:0:Tyes2978612--41210-
FSP1855:0:Tyes70395391--1663060
FSUC59374:0:Tyes---0--1841
FTUL351581:0:Tno346--0---
FTUL393011:0:Tno317--0---
FTUL393115:0:Tyes0--1176---
FTUL401614:0:Tyes371--0---
FTUL418136:0:Tno0--205---
FTUL458234:0:Tno343--0---
GBET391165:0:Tyes-0--9-154
GFOR411154:0:Tyes---11300--
GKAU235909:1:Tyes406--0---
GMET269799:1:Tyes0--67017491059-
GOXY290633:5:Tyes-0--1682-1
GSUL243231:0:Tyes0--24031468423-
GTHE420246:1:Tyes2625--22180--
GURA351605:0:Tyes---05692505-
GVIO251221:0:Tyes-198-0---
HACI382638:1:Tyes-0-----
HARS204773:0:Tyes132008-12020092007
HAUR316274:2:Tyes6662376-02419--
HBUT415426:0:Tyes0------
HCHE349521:0:Tyes3712068
HDUC233412:0:Tyes--109501094--
HHAL349124:0:Tyes-1385138913880-1384
HHEP235279:0:Tyes-1----0
HINF281310:0:Tyes--45404551293-
HINF374930:0:Tyes--753-7520-
HINF71421:0:Tno--45304541233-
HMAR272569:8:Tyes----0--
HMOD498761:0:Tyes---5161781-0
HMUK485914:1:Tyes----0--
HNEP81032:0:Tyes-0----1
HPY:0:Tno-0-----
HPYL357544:1:Tyes-0-----
HPYL85963:0:Tno-0-----
HSAL478009:4:Tyes----0--
HSOM205914:1:Tyes778-7338227320-
HSOM228400:0:Tno1400-014341926-
HSP64091:2:Tno----0--
HWAL362976:1:Tyes----0--
IHOS453591:0:Tyes523---0--
ILOI283942:0:Tyes-166065966120
JSP290400:1:Tyes-2881----0
JSP375286:0:Tyes152191-14021922190
KPNE272620:2:Tyes3519312051922169
KRAD266940:2:Fyes----397110
LACI272621:0:Tyes---01012--
LBIF355278:2:Tyes-508-0--507
LBIF456481:2:Tno1236518-0--517
LBOR355276:1:Tyes-0----1
LBOR355277:1:Tno-1----0
LBRE387344:2:Tyes561--11400-1384
LCAS321967:1:Tyes0--986820--
LCHO395495:0:Tyes01240-3371212391241
LDEL321956:0:Tyes---0545--
LDEL390333:0:Tyes0--224711--
LGAS324831:0:Tyes386--7620--
LHEL405566:0:Tyes0--3061170--
LINN272626:1:Tno---0---
LINT189518:1:Tyes-0----1
LINT267671:1:Tno-1----0
LINT363253:3:Tyes-0--380-1
LJOH257314:0:Tyes---3850--
LLAC272622:5:Tyes1461--67815330-
LLAC272623:0:Tyes---66914730-
LMES203120:1:Tyes----0469-
LMON169963:0:Tno---0---
LMON265669:0:Tyes---0---
LPLA220668:0:Tyes---2331121-0
LPNE272624:0:Tno-390-9613740391
LPNE297245:1:Fno-382-8683660383
LPNE297246:1:Fyes-384-8503680385
LPNE400673:0:Tno-1639-0165520681638
LREU557436:0:Tyes1556--5110-1411
LSAK314315:0:Tyes---257940-
LSPH444177:1:Tyes0--3183---
LWEL386043:0:Tyes---0---
LXYL281090:0:Tyes----0--
MABS561007:1:Tyes-----03792
MACE188937:0:Tyes0------
MAEO419665:0:Tyes----0--
MAER449447:0:Tyes---2261--0
MAQU351348:2:Tyes305461-
MART243272:0:Tyes---0---
MAVI243243:0:Tyes-----0-
MBAR269797:1:Tyes0------
MBOV233413:0:Tno-----0-
MBOV410289:0:Tno-----0-
MCAP243233:0:Tyes14891491014881487-1492
MCAP340047:0:Tyes---0---
MEXT419610:0:Tyes-0----1
MFLA265072:0:Tyes16031-1604130816290
MFLO265311:0:Tyes---0---
MGEN243273:0:Tyes---0---
MGIL350054:3:Tyes-----039
MHUN323259:0:Tyes----0--
MHYO262719:0:Tyes---0---
MHYO262722:0:Tno---0---
MHYO295358:0:Tno---0---
MJAN243232:2:Tyes----0--
MKAN190192:0:Tyes----0--
MLEP272631:0:Tyes-----0-
MLOT266835:2:Tyes-478--0-2614
MMAG342108:0:Tyes3070--1930-1
MMAR267377:0:Tyes----0--
MMAR394221:0:Tyes-248--0-249
MMAR426368:0:Tyes----0--
MMAR444158:0:Tyes----0--
MMAZ192952:0:Tyes0------
MMOB267748:0:Tyes---0---
MMYC272632:0:Tyes---0---
MPEN272633:0:Tyes---0---
MPET420662:1:Tyes11051-1104116220
MPUL272635:0:Tyes---0---
MSED399549:0:Tyes----0--
MSME246196:0:Tyes-----0-
MSP164756:1:Tno-----0-
MSP164757:0:Tno-----0-
MSP189918:2:Tyes-----0-
MSP266779:3:Tyes-88--0-1713
MSP400668:0:Tyes3154720
MSP409:2:Tyes-0----1
MSTA339860:0:Tyes----0--
MSUC221988:0:Tyes2114-140833-
MSYN262723:0:Tyes---0---
MTBCDC:0:Tno-----0-
MTBRV:0:Tno-----0-
MTHE187420:0:Tyes0---201--
MTHE264732:0:Tyes---0396--
MTHE349307:0:Tyes----0--
MTUB336982:0:Tno-----0-
MTUB419947:0:Tyes-----0-
MVAN350058:0:Tyes-----0-
MXAN246197:0:Tyes-5174--135605175
NARO279238:0:Tyes-437--1255-0
NEUR228410:0:Tyes01570-793179515691571
NEUT335283:2:Tyes01759-204714917581760
NFAR247156:2:Tyes-----050
NGON242231:0:Tyes-1-722118120
NHAM323097:2:Tyes15041----0
NMEN122586:0:Tno-537-12220538536
NMEN122587:0:Tyes-1-655111520
NMEN272831:0:Tno-449-10380450448
NMEN374833:0:Tno-1-657105220
NMUL323848:3:Tyes36-2057
NOCE323261:1:Tyes-3921066-391
NPHA348780:2:Tyes----0--
NSEN222891:0:Tyes----0-59
NSP103690:6:Tyes1614--0--975
NSP35761:1:Tyes-----0-
NSP387092:0:Tyes-0----1
NWIN323098:0:Tyes-1--476-0
OANT439375:5:Tyes6050--363-1
OCAR504832:0:Tyes11600----2
OIHE221109:0:Tyes---1974678-0
PABY272844:0:Tyes----0--
PAER178306:0:Tyes668---0--
PAER208963:0:Tyes4823079
PAER208964:0:Tno5176920
PARC259536:0:Tyes-257-01612256
PARS340102:0:Tyes1928---0--
PAST100379:0:Tyes---0---
PATL342610:0:Tyes-165720
PCAR338963:0:Tyes-403-0790-402
PCRY335284:1:Tyes-528-20983527
PDIS435591:0:Tyes---26782625-0
PENT384676:0:Tyes3712068
PFLU205922:0:Tyes5176820
PFLU216595:1:Tyes5176820
PFLU220664:0:Tyes5176820
PFUR186497:0:Tyes----0--
PGIN242619:0:Tyes----0--
PHAL326442:1:Tyes-341023533
PHOR70601:0:Tyes----0--
PING357804:0:Tyes-0213214212-1
PINT246198:1:Tyes----0--
PISL384616:0:Tyes554---0--
PLUM243265:0:Fyes1222112241223122502
PLUT319225:0:Tyes---0--1568
PMAR167539:0:Tyes------0
PMAR167540:0:Tyes------0
PMAR167555:0:Tyes------0
PMAR59920:0:Tno------0
PMAR74546:0:Tyes------0
PMAR74547:0:Tyes---0--722
PMEN399739:0:Tyes5176920
PMOB403833:0:Tyes----0-149
PMUL272843:1:Tyes1123-136985513700-
PNAP365044:8:Tyes18800-18941991-1
PPEN278197:0:Tyes0--747808--
PPRO298386:2:Tyes-612057
PPUT160488:0:Tno5176820
PPUT351746:0:Tyes3712068
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