CANDIDATE ID: 338

CANDIDATE ID: 338

NUMBER OF GENES: 7
AVERAGE SCORE:    9.9923819e-1 (range=[0.0,1.0])
AVERAGE MINIMUM BLAST P-VAL:    1.0000000e+0

Gene List
List of organisms containing most genes from the group
    Phylogenetic tree highlighting these organisms (opens new page)
List of organisms containing very few or no genes from the group
List of organisms enriched for group
List of organisms depleted for group
Phylogenetic profile similarity with known pathways
Pairwise genome context scores
Pairwise Blast scores
Pathway or protein complex matches in target organism
Genome context matrix
    Genes and their orthologs in genome browser BioCyc pages



GENE LIST:

- G6465 (lolA) (b0891)
   Products of gene:
     - G6465-MONOMER (periplasmic chaperone, effects translocation of lipoproteins from inner membrane to outer)

- G6463 (clpS) (b0881)
   Products of gene:
     - G6463-MONOMER (specificity factor for ClpA-ClpP chaperone-protease complex)

- EG11112 (aat) (b0885)
   Products of gene:
     - EG11112-MONOMER (leucyl, phenylalanyl-tRNA-protein transferase)
       Reactions:
        L-leucyl-tRNAleu + a protein  =  L-leucyl-protein + a tRNA

- EG11111 (cspD) (b0880)
   Products of gene:
     - EG11111-MONOMER (DNA replication inhibitor)
     - CPLX0-3301 (DNA replication inhibitor)

- EG10947 (serS) (b0893)
   Products of gene:
     - SERS-MONOMER (seryl-tRNA synthetase)
     - SERS-CPLX (seryl-tRNA synthetase)
       Reactions:
        tRNAsec + L-serine + ATP  ->  L-seryl-tRNAsec + diphosphate + AMP
         In pathways
         PWY0-901 (selenocysteine biosynthesis I (bacteria))
         PWY-6281 (PWY-6281)
        tRNAser + L-serine + ATP  ->  L-seryl-tRNAser + diphosphate + AMP
         In pathways
         TRNA-CHARGING-PWY (tRNA charging pathway)

- EG10504 (infA) (bypA1)
   Products of gene:
     - EG10504-MONOMER (protein chain initiation factor IF-1)

- EG10156 (clpA) (b0882)
   Products of gene:
     - EG10156-MONOMER (ClpA)
     - CPLX0-881 (ClpA ATP-dependent protease specificity component and chaperone)
     - CPLX0-3108 (ClpAXP)
       Reactions:
        a protein  =  a peptide + a peptide
     - CPLX0-3104 (ClpAP)
       Reactions:
        a protein  =  a peptide + a peptide



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ORGANISMS CONTAINING AT LEAST 6 GENES FROM THE GROUP:

Total number of orgs: 159
Effective number of orgs (counting one per cluster within 468 clusters): 99

Organism list
Homologs in each organism in the list
Features enriched in organism list


Follow (ncbi) link, when present, to find the set of organism features for each organism
Org ID  Org Name  # genes in group found in org  
YPSE349747 ncbi Yersinia pseudotuberculosis IP 317587
YPSE273123 ncbi Yersinia pseudotuberculosis IP 329537
YPES386656 ncbi Yersinia pestis Pestoides F7
YPES377628 ncbi Yersinia pestis Nepal5167
YPES360102 ncbi Yersinia pestis Antiqua7
YPES349746 ncbi Yersinia pestis Angola7
YPES214092 ncbi Yersinia pestis CO927
YPES187410 ncbi Yersinia pestis KIM 106
YENT393305 ncbi Yersinia enterocolitica enterocolitica 80817
XORY360094 ncbi Xanthomonas oryzae pv. oryzae PXO99A7
XORY342109 ncbi Xanthomonas oryzae pv. oryzae MAFF 3110187
XORY291331 ncbi Xanthomonas oryzae pv. oryzae KACC103317
XFAS405440 ncbi Xylella fastidiosa M126
XFAS183190 ncbi Xylella fastidiosa Temecula16
XFAS160492 ncbi Xylella fastidiosa 9a5c7
XCAM487884 Xanthomonas campestris pv. paulliniae7
XCAM316273 ncbi Xanthomonas campestris pv. vesicatoria str. 85-107
XCAM314565 ncbi Xanthomonas campestris pv. campestris str. 80047
XCAM190485 ncbi Xanthomonas campestris pv. campestris str. ATCC 339137
XAXO190486 ncbi Xanthomonas axonopodis pv. citri str. 3067
VVUL216895 ncbi Vibrio vulnificus CMCP67
VVUL196600 ncbi Vibrio vulnificus YJ0166
VPAR223926 ncbi Vibrio parahaemolyticus RIMD 22106337
VFIS312309 ncbi Vibrio fischeri ES1147
VCHO345073 ncbi Vibrio cholerae O3957
VCHO ncbi Vibrio cholerae O1 biovar El Tor str. N169617
TTUR377629 ncbi Teredinibacter turnerae T79017
TDEN292415 ncbi Thiobacillus denitrificans ATCC 252597
TCRU317025 ncbi Thiomicrospira crunogena XCL-26
STYP99287 ncbi Salmonella enterica enterica serovar Typhimurium str. LT27
SSP94122 ncbi Shewanella sp. ANA-37
SSON300269 ncbi Shigella sonnei Ss0467
SSED425104 ncbi Shewanella sediminis HAW-EB37
SPRO399741 ncbi Serratia proteamaculans 5687
SPEA398579 ncbi Shewanella pealeana ATCC 7003457
SONE211586 ncbi Shewanella oneidensis MR-17
SLOI323850 ncbi Shewanella loihica PV-47
SHIGELLA ncbi Shigella flexneri 2a str. 2457T7
SHAL458817 ncbi Shewanella halifaxensis HAW-EB47
SGLO343509 ncbi Sodalis glossinidius morsitans6
SFLE373384 ncbi Shigella flexneri 5 str. 84017
SFLE198214 ncbi Shigella flexneri 2a str. 3017
SENT454169 ncbi Salmonella enterica enterica serovar Heidelberg str. SL4767
SENT321314 ncbi Salmonella enterica enterica serovar Choleraesuis str. SC-B677
SENT295319 ncbi Salmonella enterica enterica serovar Paratyphi A str. ATCC 91507
SENT220341 ncbi Salmonella enterica enterica serovar Typhi str. CT187
SENT209261 ncbi Salmonella enterica enterica serovar Typhi str. Ty27
SDYS300267 ncbi Shigella dysenteriae Sd1977
SDEN318161 ncbi Shewanella denitrificans OS2177
SDEG203122 ncbi Saccharophagus degradans 2-407
SBOY300268 ncbi Shigella boydii Sb2277
SBAL402882 ncbi Shewanella baltica OS1857
SBAL399599 ncbi Shewanella baltica OS1957
RSOL267608 ncbi Ralstonia solanacearum GMI10007
RMET266264 ncbi Ralstonia metallidurans CH347
RFER338969 ncbi Rhodoferax ferrireducens T1186
REUT381666 ncbi Ralstonia eutropha H167
REUT264198 ncbi Ralstonia eutropha JMP1346
PSYR223283 ncbi Pseudomonas syringae pv. tomato str. DC30007
PSYR205918 ncbi Pseudomonas syringae pv. syringae B728a7
PSTU379731 ncbi Pseudomonas stutzeri A15017
PSP56811 Psychrobacter sp.6
PSP312153 ncbi Polynucleobacter necessarius asymbioticus QLW-P1DMWA-16
PSP296591 ncbi Polaromonas sp. JS6666
PPUT76869 ncbi Pseudomonas putida GB-17
PPUT351746 ncbi Pseudomonas putida F17
PPUT160488 ncbi Pseudomonas putida KT24407
PPRO298386 ncbi Photobacterium profundum SS97
PMEN399739 ncbi Pseudomonas mendocina ymp7
PLUM243265 ncbi Photorhabdus luminescens laumondii TTO17
PING357804 ncbi Psychromonas ingrahamii 376
PHAL326442 ncbi Pseudoalteromonas haloplanktis TAC1257
PFLU220664 ncbi Pseudomonas fluorescens Pf-57
PFLU216595 ncbi Pseudomonas fluorescens SBW257
PFLU205922 ncbi Pseudomonas fluorescens Pf0-17
PENT384676 ncbi Pseudomonas entomophila L487
PCRY335284 ncbi Psychrobacter cryohalolentis K57
PATL342610 ncbi Pseudoalteromonas atlantica T6c7
PARC259536 ncbi Psychrobacter arcticus 273-47
PAER208964 ncbi Pseudomonas aeruginosa PAO17
PAER208963 ncbi Pseudomonas aeruginosa UCBPP-PA147
NOCE323261 ncbi Nitrosococcus oceani ATCC 197076
NMUL323848 ncbi Nitrosospira multiformis ATCC 251967
NMEN374833 ncbi Neisseria meningitidis 0534427
NMEN272831 ncbi Neisseria meningitidis FAM187
NMEN122587 ncbi Neisseria meningitidis Z24917
NMEN122586 ncbi Neisseria meningitidis MC587
NGON242231 ncbi Neisseria gonorrhoeae FA 10907
NEUT335283 ncbi Nitrosomonas eutropha C917
NEUR228410 ncbi Nitrosomonas europaea ATCC 197187
MSP400668 ncbi Marinomonas sp. MWYL17
MPET420662 ncbi Methylibium petroleiphilum PM17
MFLA265072 ncbi Methylobacillus flagellatus KT7
MCAP243233 ncbi Methylococcus capsulatus Bath6
LPNE400673 ncbi Legionella pneumophila Corby7
LPNE297246 ncbi Legionella pneumophila Paris7
LPNE297245 ncbi Legionella pneumophila Lens7
LPNE272624 ncbi Legionella pneumophila pneumophila Philadelphia 17
LCHO395495 ncbi Leptothrix cholodnii SP-67
KPNE272620 ncbi Klebsiella pneumoniae pneumoniae MGH 785787
JSP375286 ncbi Janthinobacterium sp. Marseille7
ILOI283942 ncbi Idiomarina loihiensis L2TR7
HHAL349124 ncbi Halorhodospira halophila SL16
HCHE349521 ncbi Hahella chejuensis KCTC 23967
HARS204773 ncbi Herminiimonas arsenicoxydans7
ESP42895 Enterobacter sp.7
EFER585054 ncbi Escherichia fergusonii ATCC 354697
ECOO157 ncbi Escherichia coli O157:H7 EDL9337
ECOL83334 Escherichia coli O157:H77
ECOL585397 ncbi Escherichia coli ED1a7
ECOL585057 ncbi Escherichia coli IAI397
ECOL585056 ncbi Escherichia coli UMN0267
ECOL585055 ncbi Escherichia coli 559897
ECOL585035 ncbi Escherichia coli S887
ECOL585034 ncbi Escherichia coli IAI17
ECOL481805 ncbi Escherichia coli ATCC 87396
ECOL469008 ncbi Escherichia coli BL21(DE3)7
ECOL439855 ncbi Escherichia coli SMS-3-57
ECOL413997 ncbi Escherichia coli B str. REL6067
ECOL409438 ncbi Escherichia coli SE117
ECOL364106 ncbi Escherichia coli UTI897
ECOL362663 ncbi Escherichia coli 5367
ECOL331111 ncbi Escherichia coli E24377A7
ECOL316407 ncbi Escherichia coli K-12 substr. W31107
ECOL199310 ncbi Escherichia coli CFT0737
ECAR218491 ncbi Pectobacterium atrosepticum SCRI10437
DPSY177439 ncbi Desulfotalea psychrophila LSv546
DNOD246195 ncbi Dichelobacter nodosus VCS1703A6
DARO159087 ncbi Dechloromonas aromatica RCB7
CVIO243365 ncbi Chromobacterium violaceum ATCC 124727
CSAL290398 ncbi Chromohalobacter salexigens DSM 30437
CPSY167879 ncbi Colwellia psychrerythraea 34H7
CJAP155077 Cellvibrio japonicus7
BVIE269482 ncbi Burkholderia vietnamiensis G47
BTHA271848 ncbi Burkholderia thailandensis E2647
BSP36773 Burkholderia sp.7
BPSE320373 ncbi Burkholderia pseudomallei 6687
BPSE320372 ncbi Burkholderia pseudomallei 1710b7
BPSE272560 ncbi Burkholderia pseudomallei K962437
BPET94624 Bordetella petrii7
BPER257313 ncbi Bordetella pertussis Tohama I7
BPAR257311 ncbi Bordetella parapertussis 128227
BMAL320389 ncbi Burkholderia mallei NCTC 102477
BMAL320388 ncbi Burkholderia mallei SAVP17
BMAL243160 ncbi Burkholderia mallei ATCC 233447
BCEN331272 ncbi Burkholderia cenocepacia HI24246
BCEN331271 ncbi Burkholderia cenocepacia AU 10546
BBRO257310 ncbi Bordetella bronchiseptica RB507
BAMB398577 ncbi Burkholderia ambifaria MC40-67
BAMB339670 ncbi Burkholderia ambifaria AMMD7
ASP76114 ncbi Aromatoleum aromaticum EbN16
ASP62977 ncbi Acinetobacter sp. ADP16
ASP62928 ncbi Azoarcus sp. BH727
ASAL382245 ncbi Aeromonas salmonicida salmonicida A4497
AHYD196024 Aeromonas hydrophila dhakensis7
AFER243159 ncbi Acidithiobacillus ferrooxidans ATCC 232707
AEHR187272 ncbi Alkalilimnicola ehrlichii MLHE-16
ABOR393595 ncbi Alcanivorax borkumensis SK27
ABAU360910 ncbi Bordetella avium 197N7


Names of the homologs of the genes in the group in each of these orgs
  G6465   G6463   EG11112   EG11111   EG10947   EG10504   EG10156   
YPSE349747 YPSIP31758_2595YPSIP31758_2607YPSIP31758_2603YPSIP31758_2609YPSIP31758_2593YPSIP31758_2604YPSIP31758_3212
YPSE273123 YPTB1402YPTB1393YPTB1396YPTB1392YPTB1404YPTB1395YPTB1394
YPES386656 YPDSF_2318YPDSF_2328YPDSF_2324YPDSF_2330YPDSF_2316YPDSF_2325YPDSF_2911
YPES377628 YPN_2603YPN_2613YPN_2609YPN_2614YPN_2601YPN_2610YPN_2612
YPES360102 YPA_0667YPA_0657YPA_0661YPA_0656YPA_0669YPA_0660YPA_2766
YPES349746 YPANGOLA_A1614YPANGOLA_A1600YPANGOLA_A1604YPANGOLA_A1599YPANGOLA_A1616YPANGOLA_A1603YPANGOLA_A3475
YPES214092 YPO1377YPO1367YPO1371YPO1366YPO1379YPO1370YPO3275
YPES187410 Y2798Y2810Y2806Y2796Y2807Y0914
YENT393305 YE1526YE1517YE1520YE1516YE1528YE1519YE1518
XORY360094 XOOORF_2775XOOORF_2786XOOORF_2783XOOORF_3133XOOORF_2888XOOORF_2784XOOORF_2785
XORY342109 XOO2403XOO2413XOO2410XOO1765XOO1988XOO2411XOO2412
XORY291331 XOO2544XOO2554XOO2551XOO1870XOO2116XOO2552XOO2553
XFAS405440 XFASM12_0795XFASM12_0785XFASM12_0789XFASM12_1477XFASM12_0788XFASM12_0786
XFAS183190 PD_0672PD_0664PD_0667PD_1318PD_0666PD_0665
XFAS160492 XF1452XF1442XF1446XF2352XF2286XF1445XF1443
XCAM487884 XCC-B100_2273XCC-B100_2265XCC-B100_2268XCC-B100_3017XCC-B100_2666XCC-B100_2267XCC-B100_2266
XCAM316273 XCAORF_2254XCAORF_2245XCAORF_2248XCAORF_1541XCAORF_1873XCAORF_2247XCAORF_2246
XCAM314565 XC_2211XC_2219XC_2216XC_2955XC_2640XC_2217XC_2218
XCAM190485 XCC1974XCC1966XCC1969XCC1286XCC1594XCC1968XCC1967
XAXO190486 XAC2008XAC2000XAC2003XAC1337XAC1653XAC2002XAC2001
VVUL216895 VV1_2949VV1_2120VV1_2124VV1_2119VV1_2946VV1_2123VV1_2121
VVUL196600 VV1323VV2323VV2324VV1325VV2321VV2322
VPAR223926 VP1106VP1013VP1018VP1012VP1108VP1016VP1014
VFIS312309 VF0906VF1766VF1762VF1767VF0908VF1764VF1765
VCHO345073 VC0395_A0626VC0395_A0713VC0395_A1336VC0395_A0712VC0395_A0628VC0395_A1338VC0395_A0714
VCHO VC1107VC1143VC1735VC1142VC1110VC1737VC1144
TTUR377629 TERTU_1970TERTU_1962TERTU_1967TERTU_1961TERTU_1973TERTU_1964TERTU_1963
TDEN292415 TBD_1497TBD_1236TBD_2043TBD_0855TBD_1229TBD_0426TBD_1237
TCRU317025 TCR_0765TCR_1111TCR_1114TCR_0768TCR_1113TCR_1112
STYP99287 STM0961STM0944STM0955STM0943STM0963STM0953STM0945
SSP94122 SHEWANA3_2051SHEWANA3_1752SHEWANA3_1756SHEWANA3_1751SHEWANA3_2054SHEWANA3_1754SHEWANA3_1753
SSON300269 SSO_0892SSO_0882SSO_0886SSO_0867SSO_0894SSO_0885SSO_0883
SSED425104 SSED_2128SSED_1885SSED_1889SSED_1884SSED_2131SSED_1887SSED_1886
SPRO399741 SPRO_1684SPRO_1673SPRO_1676SPRO_1672SPRO_1686SPRO_1675SPRO_1674
SPEA398579 SPEA_2232SPEA_2533SPEA_2529SPEA_2534SPEA_2229SPEA_2531SPEA_2532
SONE211586 SO_2307SO_2627SO_2623SO_2628SO_2310SO_2625SO_2626
SLOI323850 SHEW_2023SHEW_1565SHEW_1569SHEW_1564SHEW_2020SHEW_1567SHEW_1566
SHIGELLA LOLAYLJAAATCSPDSERSINFACLPA
SHAL458817 SHAL_2216SHAL_1720SHAL_1724SHAL_1719SHAL_2213SHAL_1722SHAL_1721
SGLO343509 SG1109SG1101SG1100SG1111SG1103SG1102
SFLE373384 SFV_0882SFV_0872SFV_0876SFV_0871SFV_0884SFV_0875SFV_0873
SFLE198214 AAN42483.1AAN42474.1AAN42477.1AAN42473.1AAN42485.1AAN42476.1AAN42475.1
SENT454169 SEHA_C1060SEHA_C1043SEHA_C1054SEHA_C1042SEHA_C1062SEHA_C1053SEHA_C1044
SENT321314 SCH_0915SCH_0899SCH_0909SCH_0898SCH_0917SCH_0907SCH_0900
SENT295319 SPA1837SPA1855SPA1843SPA1856SPA1835SPA1845SPA1854
SENT220341 STY0959STY0942STY0953STY0939STY0961STY0951STY0943
SENT209261 T1973T1989T1979T1990T1971T1980T1988
SDYS300267 SDY_2370SDY_2380SDY_2376SDY_2381SDY_2368SDY_2377SDY_2379
SDEN318161 SDEN_1744SDEN_1833SDEN_1837SDEN_1832SDEN_1747SDEN_1835SDEN_1834
SDEG203122 SDE_1694SDE_1686SDE_1691SDE_1685SDE_1697SDE_1688SDE_1687
SBOY300268 SBO_0824SBO_0814SBO_0818SBO_0813SBO_0826SBO_0817SBO_0815
SBAL402882 SHEW185_2214SHEW185_2466SHEW185_2462SHEW185_2467SHEW185_2211SHEW185_2464SHEW185_2465
SBAL399599 SBAL195_2322SBAL195_2586SBAL195_2582SBAL195_2587SBAL195_2319SBAL195_2584SBAL195_2585
RSOL267608 RSC2340RSC2465RSC1617RSC2466RSC2337RSC2998RSC2464
RMET266264 RMET_0686RMET_2893RMET_1216RMET_5818RMET_0695RMET_3296RMET_2892
RFER338969 RFER_3177RFER_2760RFER_2349RFER_3243RFER_4222RFER_2759
REUT381666 H16_A0755H16_A3053H16_A1403H16_B0002H16_A0764H16_A3463H16_A3052
REUT264198 REUT_A2599REUT_A2753REUT_A1319REUT_C6028REUT_A2594REUT_A2752
PSYR223283 PSPTO_3348PSPTO_3354PSPTO_3350PSPTO_3355PSPTO_3345PSPTO_3352PSPTO_3353
PSYR205918 PSYR_3178PSYR_3184PSYR_3180PSYR_3185PSYR_3175PSYR_3182PSYR_3183
PSTU379731 PST_2292PST_2299PST_2295PST_2300PST_2289PST_2297PST_2298
PSP56811 PSYCPRWF_0893PSYCPRWF_1596PSYCPRWF_0618PSYCPRWF_0613PSYCPRWF_1539PSYCPRWF_1932
PSP312153 PNUC_1749PNUC_0743PNUC_0586PNUC_0692PNUC_0074PNUC_1748
PSP296591 BPRO_3798BPRO_2941BPRO_2326BPRO_0953BPRO_0496BPRO_2940
PPUT76869 PPUTGB1_3608PPUTGB1_3614PPUTGB1_3610PPUTGB1_3615PPUTGB1_3605PPUTGB1_3612PPUTGB1_3613
PPUT351746 PPUT_1830PPUT_1824PPUT_1828PPUT_1823PPUT_1833PPUT_1826PPUT_1825
PPUT160488 PP_4003PP_4009PP_4005PP_4010PP_4000PP_4007PP_4008
PPRO298386 PBPRA1163PBPRA1151PBPRA1155PBPRA1150PBPRA1165PBPRA1153PBPRA1152
PMEN399739 PMEN_2387PMEN_2394PMEN_2390PMEN_2395PMEN_2384PMEN_2392PMEN_2393
PLUM243265 PLU1602PLU1593PLU1596PLU1592PLU1604PLU1595PLU1594
PING357804 PING_1663PING_0742PING_2258PING_1666PING_0744PING_0743
PHAL326442 PSHAA1715PSHAA1725PSHAA1721PSHAA1726PSHAA1712PSHAA1723PSHAA1724
PFLU220664 PFL_3879PFL_3886PFL_3882PFL_3887PFL_3876PFL_3884PFL_3885
PFLU216595 PFLU3800PFLU3806PFLU3802PFLU3807PFLU3797PFLU3804PFLU3805
PFLU205922 PFL_3585PFL_3591PFL_3587PFL_3592PFL_3582PFL_3589PFL_3590
PENT384676 PSEEN2213PSEEN2206PSEEN2210PSEEN2205PSEEN2216PSEEN2208PSEEN2207
PCRY335284 PCRYO_1753PCRYO_1678PCRYO_0428PCRYO_2133PCRYO_1850PCRYO_1569PCRYO_1677
PATL342610 PATL_2459PATL_2375PATL_2371PATL_2376PATL_2456PATL_2373PATL_2374
PARC259536 PSYC_1571PSYC_1499PSYC_0387PSYC_1846PSYC_1618PSYC_1409PSYC_1498
PAER208964 PA2614PA2621PA2617PA2622PA2612PA2619PA2620
PAER208963 PA14_30310PA14_30210PA14_30270PA14_30200PA14_30330PA14_30240PA14_30230
NOCE323261 NOC_0348NOC_2426NOC_2596NOC_1036NOC_2598NOC_2425
NMUL323848 NMUL_A0178NMUL_A2247NMUL_A2709NMUL_A2246NMUL_A0180NMUL_A0788NMUL_A2248
NMEN374833 NMCC_0570NMCC_0795NMCC_1942NMCC_0796NMCC_1597NMCC_1987BNMCC_0794
NMEN272831 NMC0566NMC0775NMC0198NMC0776NMC1602NMC0153NMC0774
NMEN122587 NMA0830NMA1046NMA0063NMA1047NMA1943NMA0108NMA1045
NMEN122586 NMB_0622NMB_0837NMB_0206NMB_0838NMB_1684NMB_0163NMB_0836
NGON242231 NGO0205NGO0409NGO1778NGO0410NGO1335NGO18211NGO0408
NEUT335283 NEUT_2489NEUT_2047NEUT_0648NEUT_2046NEUT_0263NEUT_0579NEUT_2048
NEUR228410 NE1052NE1732NE2219NE1731NE0180NE0422NE1733
MSP400668 MMWYL1_3255MMWYL1_3261MMWYL1_3258MMWYL1_3262MMWYL1_3252MMWYL1_3259MMWYL1_3260
MPET420662 MPE_A1121MPE_A2462MPE_A1469MPE_A2463MPE_A2692MPE_A3422MPE_A2461
MFLA265072 MFLA_1125MFLA_0509MFLA_1076MFLA_2140MFLA_1129MFLA_0300MFLA_0508
MCAP243233 MCA_1783MCA_1788MCA_1792MCA_1971MCA_1790MCA_1789
LPNE400673 LPC_1206LPC_2478LPC_1209LPC_2917LPC_2833LPC_1211LPC_2477
LPNE297246 LPP1729LPP0879LPP1732LPP0493LPP0575LPP1734LPP0880
LPNE297245 LPL1729LPL0850LPL1732LPL0469LPL0551LPL1734LPL0851
LPNE272624 LPG1765LPG0817LPG1768LPG0426LPG0513LPG1770LPG0818
LCHO395495 LCHO_0757LCHO_1663LCHO_1978LCHO_1662LCHO_0692LCHO_3928LCHO_1664
KPNE272620 GKPORF_B5364GKPORF_B5353GKPORF_B5356GKPORF_B5352GKPORF_B5366GKPORF_B5355GKPORF_B2247
JSP375286 MMA_1155MMA_2515MMA_2511MMA_2516MMA_1157MMA_3390MMA_2514
ILOI283942 IL0666IL0675IL0671IL0676IL0663IL0673IL0674
HHAL349124 HHAL_1394HHAL_1401HHAL_1397HHAL_1392HHAL_1399HHAL_1400
HCHE349521 HCH_02446HCH_02338HCH_02343HCH_02337HCH_02449HCH_02340HCH_02339
HARS204773 HEAR1019HEAR2446HEAR2442HEAR2448HEAR1022HEAR3145HEAR2445
ESP42895 ENT638_1415ENT638_1398ENT638_1409ENT638_1397ENT638_1417ENT638_1407ENT638_1399
EFER585054 EFER_1040EFER_1029EFER_1033EFER_1028EFER_1042EFER_1032EFER_1030
ECOO157 LOLAYLJAAATCSPDSERSINFACLPA
ECOL83334 ECS0976ECS0967ECS0970ECS0966ECS0978ECS0969ECS0968
ECOL585397 ECED1_0865ECED1_0848ECED1_0859ECED1_0847ECED1_0867ECED1_0858ECED1_0849
ECOL585057 ECIAI39_2257ECIAI39_2270ECIAI39_2265ECIAI39_2272ECIAI39_2255ECIAI39_2266ECIAI39_2269
ECOL585056 ECUMN_1086ECUMN_1076ECUMN_1080ECUMN_1075ECUMN_1088ECUMN_1079ECUMN_1077
ECOL585055 EC55989_0936EC55989_0926EC55989_0930EC55989_0925EC55989_0938EC55989_0929EC55989_0927
ECOL585035 ECS88_0922ECS88_0903ECS88_0914ECS88_0902ECS88_0924ECS88_0913ECS88_0904
ECOL585034 ECIAI1_0931ECIAI1_0921ECIAI1_0925ECIAI1_0920ECIAI1_0933ECIAI1_0924ECIAI1_0922
ECOL481805 ECOLC_2705ECOLC_2715ECOLC_2711ECOLC_2716ECOLC_2703ECOLC_2712
ECOL469008 ECBD_2704ECBD_2713ECBD_2710ECBD_2714ECBD_2702ECBD_2711ECBD_2712
ECOL439855 ECSMS35_2229ECSMS35_2279ECSMS35_2236ECSMS35_2280ECSMS35_2227ECSMS35_2237ECSMS35_2278
ECOL413997 ECB_00895ECB_00886ECB_00889ECB_00885ECB_00897ECB_00888ECB_00887
ECOL409438 ECSE_0949ECSE_0939ECSE_0943ECSE_0938ECSE_0951ECSE_0942ECSE_0940
ECOL364106 UTI89_C0906UTI89_C0887UTI89_C0900UTI89_C0885UTI89_C0908UTI89_C0899UTI89_C0888
ECOL362663 ECP_0905ECP_0896ECP_0899ECP_0895ECP_0907ECP_0898ECP_0897
ECOL331111 ECE24377A_0966ECE24377A_0954ECE24377A_0958ECE24377A_0953ECE24377A_0968ECE24377A_0957ECE24377A_0955
ECOL316407 ECK0882:JW0874:B0891ECK0872:JW0865:B0881ECK0876:JW0868:B0885ECK0871:JW0864:B0880ECK0884:JW0876:B0893ECK0875:JW0867:B0884ECK0873:JW0866:B0882
ECOL199310 C1028C1018C1022C1017C1030C1021C1019
ECAR218491 ECA2646ECA2657ECA2652ECA2659ECA2644ECA2653ECA2656
DPSY177439 DP0887DP1903DP0960DP1764DP1147DP0886
DNOD246195 DNO_0484DNO_0656DNO_0680DNO_1065DNO_1198DNO_0655
DARO159087 DARO_1296DARO_3094DARO_1196DARO_3093DARO_1300DARO_0340DARO_3095
CVIO243365 CV_1614CV_3668CV_1798CV_3667CV_1375CV_4165CV_3669
CSAL290398 CSAL_2435CSAL_2441CSAL_2437CSAL_1668CSAL_2315CSAL_2439CSAL_2440
CPSY167879 CPS_2758CPS_2894CPS_2763CPS_2895CPS_2755CPS_2765CPS_2893
CJAP155077 CJA_2555CJA_2569CJA_2565CJA_2570CJA_2552CJA_2567CJA_2568
BVIE269482 BCEP1808_0892BCEP1808_2597BCEP1808_1520BCEP1808_2598BCEP1808_0895BCEP1808_0351BCEP1808_2596
BTHA271848 BTH_I1562BTH_I0762BTH_I2509BTH_I2936BTH_I1565BTH_I3047BTH_I0763
BSP36773 BCEP18194_A4079BCEP18194_A5851BCEP18194_A4698BCEP18194_A5852BCEP18194_A4082BCEP18194_A3468BCEP18194_A5850
BPSE320373 BURPS668_2989BURPS668_0959BURPS668_1811BURPS668_3598BURPS668_2986BURPS668_3725BURPS668_0960
BPSE320372 BURPS1710B_A3332BURPS1710B_A1173BURPS1710B_A2139BURPS1710B_A3897BURPS1710B_A3329BURPS1710B_A4048BURPS1710B_A1174
BPSE272560 BPSL2603BPSL0898ABPSL1864BPSL3079BPSL2600BPSL3192BPSL0899
BPET94624 BPET1575BPET2662BPET0933BPET2663BPET1587BPET4929BPET2659
BPER257313 BP2472BP2756BP3444BP2757BP2470BP3637BP2753
BPAR257311 BPP3461BPP2572BPP3538BPP2571BPP3459BPP0052BPP2575
BMAL320389 BMA10247_1989BMA10247_2157BMA10247_0770BMA10247_3184BMA10247_1986BMA10247_3499BMA10247_2158
BMAL320388 BMASAVP1_A0791BMASAVP1_A0575BMASAVP1_A1734BMASAVP1_A0574BMASAVP1_A0794BMASAVP1_A3148BMASAVP1_A0576
BMAL243160 BMA_2121BMA_2280BMA_1251BMA_2791BMA_2118BMA_2611BMA_2281
BCEN331272 BCEN2424_2519BCEN2424_1556BCEN2424_2520BCEN2424_0979BCEN2424_0369BCEN2424_2518
BCEN331271 BCEN_1908BCEN_1076BCEN_1909BCEN_0500BCEN_2738BCEN_1907
BBRO257310 BB3910BB2017BB3973BB2016BB3908BB0052BB2020
BAMB398577 BAMMC406_0848BAMMC406_2437BAMMC406_1478BAMMC406_2438BAMMC406_0851BAMMC406_0297BAMMC406_2436
BAMB339670 BAMB_0836BAMB_2567BAMB_1457BAMB_0408BAMB_0839BAMB_0288BAMB_2566
ASP76114 EBA7039EBD83EBA4891EBC12EBA7034EBA4477
ASP62977 ACIAD2937ACIAD1362ACIAD0889ACIAD2935ACIAD0472ACIAD1363
ASP62928 AZO1366AZO1133AZO2208AZO1134AZO1369AZO3396AZO1132
ASAL382245 ASA_2437ASA_2447ASA_2443ASA_2448ASA_2435ASA_2445ASA_2446
AHYD196024 AHA_1866AHA_1856AHA_1860AHA_1855AHA_1868AHA_1858AHA_1857
AFER243159 AFE_2655AFE_2517AFE_2780AFE_2450AFE_2652AFE_2683AFE_2518
AEHR187272 MLG_1711MLG_1448MLG_1713MLG_1699MLG_1446MLG_1447
ABOR393595 ABO_1291ABO_1284ABO_1288ABO_1283ABO_1294ABO_1286ABO_1285
ABAU360910 BAV2694BAV2091BAV2751BAV2092BAV2685BAV0055BAV2088


Organism features enriched in list (features available for 151 out of the 159 orgs in the list)
Feature    Pvalue       Num occurrences in list  Total num occurrences  
Arrangment:Chains 0.0000240992
Arrangment:Pairs 0.000917742112
Disease:Bubonic_plague 0.000280166
Disease:Dysentery 0.000280166
Disease:Gastroenteritis 0.00013251013
Disease:Legionnaire's_disease 0.004368444
Disease:Meningitis_and_septicemia 0.004368444
Endospores:No 3.530e-828211
GC_Content_Range4:0-40 7.920e-276213
GC_Content_Range4:40-60 1.952e-1396224
GC_Content_Range4:60-100 0.004082549145
GC_Content_Range7:30-40 4.221e-186166
GC_Content_Range7:50-60 9.370e-1257107
GC_Content_Range7:60-70 0.000628549134
Genome_Size_Range5:0-2 6.164e-231155
Genome_Size_Range5:2-4 0.000203334197
Genome_Size_Range5:4-6 2.188e-1993184
Genome_Size_Range5:6-10 0.00023302347
Genome_Size_Range9:1-2 3.717e-181128
Genome_Size_Range9:2-3 0.000666718120
Genome_Size_Range9:4-5 1.830e-74696
Genome_Size_Range9:5-6 1.216e-94788
Genome_Size_Range9:6-8 0.00001182238
Gram_Stain:Gram_Neg 3.938e-26138333
Motility:No 2.173e-1012151
Motility:Yes 3.657e-13107267
Optimal_temp.:35-37 0.0053909813
Oxygen_Req:Anaerobic 2.528e-104102
Oxygen_Req:Facultative 3.218e-675201
Pathogenic_in:No 9.345e-637226
Pathogenic_in:Plant 0.00011791115
Shape:Coccus 0.0000191782
Shape:Rod 7.094e-14127347
Shape:Spiral 0.0020976234
Temp._range:Mesophilic 0.0065165132473
Temp._range:Psychrophilic 4.377e-699
Temp._range:Thermophilic 0.0002536135



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ORGANISMS CONTAINING AT MOST 1 GENES FROM THE GROUP:

Total number of orgs: 149
Effective number of orgs (counting one per cluster within 468 clusters): 130

Organism list
Homologs in each organism in the list
Features enriched in organism list


Follow (ncbi) link, when present, to find the set of organism features for each organism
Org ID  Org Name  # genes in group found in org  
WPIP955 Wolbachia pipientis1
WPIP80849 Wolbachia endosymbiont of Brugia malayi1
UURE95667 Ureaplasma urealyticum serovar 130
UURE95664 Ureaplasma urealyticum serovar 100
UPAR505682 ncbi Ureaplasma parvum serovar 3 str. ATCC 278150
UMET351160 ncbi uncultured methanogenic archaeon RC-I0
TWHI218496 ncbi Tropheryma whipplei TW08/270
TWHI203267 ncbi Tropheryma whipplei Twist0
TVOL273116 ncbi Thermoplasma volcanium GSS10
TTHE300852 ncbi Thermus thermophilus HB80
TTHE262724 ncbi Thermus thermophilus HB270
TROS309801 ncbi Thermomicrobium roseum DSM 51591
TPEN368408 ncbi Thermofilum pendens Hrk 50
TPAL243276 ncbi Treponema pallidum pallidum Nichols1
TKOD69014 ncbi Thermococcus kodakarensis KOD10
TACI273075 ncbi Thermoplasma acidophilum DSM 17280
STOK273063 ncbi Sulfolobus tokodaii 70
SSUI391295 ncbi Streptococcus suis 05ZYH331
SSP84588 ncbi Synechococcus sp. WH 81021
SSP64471 ncbi Synechococcus sp. CC93111
SSP1148 ncbi Synechocystis sp. PCC 68031
SSP1131 Synechococcus sp. CC96050
SSOL273057 ncbi Sulfolobus solfataricus P20
SPYO286636 ncbi Streptococcus pyogenes MGAS103941
SPYO193567 ncbi Streptococcus pyogenes SSI-11
SMAR399550 ncbi Staphylothermus marinus F10
SELO269084 ncbi Synechococcus elongatus PCC 63011
SACI330779 ncbi Sulfolobus acidocaldarius DSM 6390
RTYP257363 ncbi Rickettsia typhi Wilmington1
RRIC452659 ncbi Rickettsia rickettsii Iowa1
RRIC392021 ncbi Rickettsia rickettsii Sheila Smith1
RPRO272947 ncbi Rickettsia prowazekii Madrid E1
RMAS416276 ncbi Rickettsia massiliae MTU50
RFEL315456 ncbi Rickettsia felis URRWXCal21
RCON272944 ncbi Rickettsia conorii Malish 71
RALB246199 Ruminococcus albus 81
RAKA293614 ncbi Rickettsia akari Hartford0
PTOR263820 ncbi Picrophilus torridus DSM 97900
PSP117 Pirellula sp.1
PMAR93060 ncbi Prochlorococcus marinus MIT 92150
PMAR74547 ncbi Prochlorococcus marinus MIT 93131
PMAR74546 ncbi Prochlorococcus marinus MIT 93121
PMAR59920 ncbi Prochlorococcus marinus NATL2A1
PMAR167555 ncbi Prochlorococcus marinus NATL1A1
PMAR167546 ncbi Prochlorococcus marinus MIT 93010
PMAR167542 ncbi Prochlorococcus marinus MIT 95150
PMAR167540 Prochlorococcus marinus pastoris MED4ax1
PMAR167539 ncbi Prochlorococcus marinus marinus CCMP13751
PMAR146891 ncbi Prochlorococcus marinus AS96010
PISL384616 ncbi Pyrobaculum islandicum DSM 41840
PINT246198 Prevotella intermedia 171
PHOR70601 ncbi Pyrococcus horikoshii OT30
PGIN242619 ncbi Porphyromonas gingivalis W831
PFUR186497 ncbi Pyrococcus furiosus DSM 36380
PAST100379 Onion yellows phytoplasma0
PARS340102 ncbi Pyrobaculum arsenaticum DSM 135140
PAER178306 ncbi Pyrobaculum aerophilum IM20
PACN267747 ncbi Propionibacterium acnes KPA1712021
PABY272844 ncbi Pyrococcus abyssi GE50
OTSU357244 ncbi Orientia tsutsugamushi Boryong0
NSEN222891 ncbi Neorickettsia sennetsu Miyayama1
NPHA348780 ncbi Natronomonas pharaonis DSM 21600
MTHE349307 ncbi Methanosaeta thermophila PT0
MTHE187420 ncbi Methanothermobacter thermautotrophicus Delta H0
MSYN262723 ncbi Mycoplasma synoviae 530
MSTA339860 ncbi Methanosphaera stadtmanae DSM 30910
MSED399549 ncbi Metallosphaera sedula DSM 53480
MPUL272635 ncbi Mycoplasma pulmonis UAB CTIP0
MPNE272634 ncbi Mycoplasma pneumoniae M1290
MPEN272633 ncbi Mycoplasma penetrans HF-20
MMYC272632 ncbi Mycoplasma mycoides mycoides SC str. PG10
MMOB267748 ncbi Mycoplasma mobile 163K0
MMAZ192952 ncbi Methanosarcina mazei Go11
MMAR444158 ncbi Methanococcus maripaludis C60
MMAR426368 ncbi Methanococcus maripaludis C70
MMAR402880 ncbi Methanococcus maripaludis C50
MMAR368407 ncbi Methanoculleus marisnigri JR10
MMAR267377 ncbi Methanococcus maripaludis S20
MLAB410358 ncbi Methanocorpusculum labreanum Z0
MKAN190192 ncbi Methanopyrus kandleri AV190
MJAN243232 ncbi Methanocaldococcus jannaschii DSM 26610
MHYO295358 ncbi Mycoplasma hyopneumoniae 2320
MHYO262722 ncbi Mycoplasma hyopneumoniae 74480
MHYO262719 ncbi Mycoplasma hyopneumoniae J0
MHUN323259 ncbi Methanospirillum hungatei JF-10
MGEN243273 ncbi Mycoplasma genitalium G370
MFLO265311 ncbi Mesoplasma florum L10
MCAP340047 ncbi Mycoplasma capricolum capricolum ATCC 273430
MBUR259564 ncbi Methanococcoides burtonii DSM 62420
MBAR269797 ncbi Methanosarcina barkeri Fusaro0
MART243272 ncbi Mycoplasma arthritidis 158L3-10
MAEO419665 ncbi Methanococcus aeolicus Nankai-30
MACE188937 ncbi Methanosarcina acetivorans C2A0
LXYL281090 ncbi Leifsonia xyli xyli CTCB071
LHEL405566 ncbi Lactobacillus helveticus DPC 45711
LACI272621 ncbi Lactobacillus acidophilus NCFM1
IHOS453591 ncbi Ignicoccus hospitalis KIN4/I0
HWAL362976 ncbi Haloquadratum walsbyi DSM 167900
HSP64091 ncbi Halobacterium sp. NRC-10
HSAL478009 ncbi Halobacterium salinarum R10
HPYL85963 ncbi Helicobacter pylori J991
HPYL357544 ncbi Helicobacter pylori HPAG11
HPY ncbi Helicobacter pylori 266951
HMUK485914 ncbi Halomicrobium mukohataei DSM 122860
HMAR272569 ncbi Haloarcula marismortui ATCC 430490
HBUT415426 ncbi Hyperthermus butylicus DSM 54560
HACI382638 ncbi Helicobacter acinonychis Sheeba1
FSUC59374 ncbi Fibrobacter succinogenes succinogenes S851
DSP255470 ncbi Dehalococcoides sp. CBDB11
DSP216389 ncbi Dehalococcoides sp. BAV11
DETH243164 ncbi Dehalococcoides ethenogenes 1951
CTRA471473 ncbi Chlamydia trachomatis L2b/UCH-1/proctitis0
CTRA471472 ncbi Chlamydia trachomatis 434/Bu0
CSUL444179 ncbi Candidatus Sulcia muelleri GWSS0
CPRO264201 ncbi Candidatus Protochlamydia amoebophila UWE250
CPNE182082 ncbi Chlamydophila pneumoniae TW-1830
CPNE138677 ncbi Chlamydophila pneumoniae J1380
CPNE115713 ncbi Chlamydophila pneumoniae CWL0290
CPNE115711 ncbi Chlamydophila pneumoniae AR390
CPEL335992 ncbi Candidatus Pelagibacter ubique HTCC10621
CMUR243161 ncbi Chlamydia muridarum Nigg0
CMET456442 ncbi Candidatus Methanoregula boonei 6A80
CMAQ397948 ncbi Caldivirga maquilingensis IC-1670
CKOR374847 ncbi Candidatus Korarchaeum cryptofilum OPF80
CHUT269798 ncbi Cytophaga hutchinsonii ATCC 334061
CHOM360107 ncbi Campylobacter hominis ATCC BAA-3811
CGLU196627 ncbi Corynebacterium glutamicum ATCC 130321
CFEL264202 ncbi Chlamydophila felis Fe/C-560
CCUR360105 ncbi Campylobacter curvus 525.921
CCON360104 ncbi Campylobacter concisus 138261
CCHL340177 ncbi Chlorobium chlorochromatii CaD31
CCAV227941 ncbi Chlamydophila caviae GPIC0
CABO218497 ncbi Chlamydophila abortus S26/30
BXEN266265 ncbi Burkholderia xenovorans LB4001
BTUR314724 ncbi Borrelia turicatae 91E1351
BLON206672 ncbi Bifidobacterium longum NCC27050
BHER314723 ncbi Borrelia hermsii DAH1
BGAR290434 ncbi Borrelia garinii PBi1
BFRA295405 ncbi Bacteroides fragilis YCH461
BFRA272559 ncbi Bacteroides fragilis NCTC 93431
BBUR224326 ncbi Borrelia burgdorferi B311
BAFZ390236 ncbi Borrelia afzelii PKo1
AYEL322098 ncbi Aster yellows witches-broom phytoplasma AYWB0
AURANTIMONAS Aurantimonas manganoxydans SI85-9A10
APHA212042 ncbi Anaplasma phagocytophilum HZ1
APER272557 ncbi Aeropyrum pernix K10
AMAR234826 ncbi Anaplasma marginale St. Maries1
ALAI441768 ncbi Acholeplasma laidlawii PG-8A1
AFUL224325 ncbi Archaeoglobus fulgidus DSM 43040


Names of the homologs of the genes in the group in each of these orgs
  G6465   G6463   EG11112   EG11111   EG10947   EG10504   EG10156   
WPIP955 WD_1237
WPIP80849 WB_0152
UURE95667
UURE95664
UPAR505682
UMET351160
TWHI218496
TWHI203267
TVOL273116
TTHE300852
TTHE262724
TROS309801 TRD_1742
TPEN368408
TPAL243276 TP_0801
TKOD69014
TACI273075
STOK273063
SSUI391295 SSU05_0092
SSP84588 SYNW1894OR0706
SSP64471 GSYN2022
SSP1148 SLL0869
SSP1131
SSOL273057
SPYO286636 M6_SPY1477
SPYO193567 SPS0350
SMAR399550
SELO269084 SYC0918_D
SACI330779
RTYP257363 RT0802
RRIC452659 RRIOWA_1483
RRIC392021 A1G_06945
RPRO272947 RP814
RMAS416276
RFEL315456 RF_1292
RCON272944 RC1265
RALB246199 GRAORF_3038
RAKA293614
PTOR263820
PSP117 RB12137
PMAR93060
PMAR74547 PMT1061
PMAR74546 PMT9312_1099
PMAR59920 PMN2A_0660
PMAR167555 NATL1_14921
PMAR167546
PMAR167542
PMAR167540 PMM1088
PMAR167539 PRO_1107
PMAR146891
PISL384616
PINT246198 PIN_A1043
PHOR70601
PGIN242619 PG_1916
PFUR186497
PAST100379
PARS340102
PAER178306
PACN267747 PPA2221
PABY272844
OTSU357244
NSEN222891 NSE_0119
NPHA348780
MTHE349307
MTHE187420
MSYN262723
MSTA339860
MSED399549
MPUL272635
MPNE272634
MPEN272633
MMYC272632
MMOB267748
MMAZ192952 MM0865
MMAR444158
MMAR426368
MMAR402880
MMAR368407
MMAR267377
MLAB410358
MKAN190192
MJAN243232
MHYO295358
MHYO262722
MHYO262719
MHUN323259
MGEN243273
MFLO265311
MCAP340047
MBUR259564
MBAR269797
MART243272
MAEO419665
MACE188937
LXYL281090 LXX20110
LHEL405566 LHV_0334
LACI272621 LBA0313
IHOS453591
HWAL362976
HSP64091
HSAL478009
HPYL85963 JHP0028
HPYL357544 HPAG1_0030
HPY HP0032
HMUK485914
HMAR272569
HBUT415426
HACI382638 HAC_0045
FSUC59374 FSU3208
DSP255470 CBDBA70
DSP216389 DEHABAV1_0051
DETH243164 DET_0057
CTRA471473
CTRA471472
CSUL444179
CPRO264201
CPNE182082
CPNE138677
CPNE115713
CPNE115711
CPEL335992 SAR11_0978
CMUR243161
CMET456442
CMAQ397948
CKOR374847
CHUT269798 CHU_3140
CHOM360107 CHAB381_1113
CGLU196627 CG0651
CFEL264202
CCUR360105 CCV52592_1189
CCON360104 CCC13826_0773
CCHL340177 CAG_1484
CCAV227941
CABO218497
BXEN266265 BXE_B2951
BTUR314724 BT0169
BLON206672
BHER314723 BH0169
BGAR290434 BG0168
BFRA295405 BF4159
BFRA272559 BF3981
BBUR224326 BB_0169
BAFZ390236 BAPKO_0171
AYEL322098
AURANTIMONAS
APHA212042 APH_0450
APER272557
AMAR234826 AM731
ALAI441768 ACL_0009
AFUL224325


Organism features enriched in list (features available for 138 out of the 149 orgs in the list)
Feature    Pvalue       Num occurrences in list  Total num occurrences  
Arrangment:Aggregates 0.006219969
Arrangment:Chains 0.0000475892
Arrangment:Pairs 0.000026311112
Arrangment:Singles 0.002712981286
Disease:Pharyngitis 8.412e-688
Disease:bronchitis_and_pneumonitis 8.412e-688
Endospores:No 7.757e-774211
GC_Content_Range4:0-40 0.000080769213
GC_Content_Range4:60-100 1.923e-713145
GC_Content_Range7:0-30 0.00005122347
GC_Content_Range7:40-50 0.004621438117
GC_Content_Range7:60-70 2.499e-613134
Genome_Size_Range5:0-2 2.640e-3091155
Genome_Size_Range5:4-6 1.838e-177184
Genome_Size_Range5:6-10 0.0000270147
Genome_Size_Range9:0-1 1.515e-92127
Genome_Size_Range9:1-2 1.111e-1870128
Genome_Size_Range9:3-4 0.0003262777
Genome_Size_Range9:4-5 2.558e-8496
Genome_Size_Range9:5-6 2.884e-8388
Gram_Stain:Gram_Neg 0.000343162333
Gram_Stain:Gram_Pos 1.295e-812150
Habitat:Aquatic 0.00010173691
Habitat:Host-associated 0.002262662206
Habitat:Multiple 4.896e-1212178
Habitat:Specialized 0.00046082353
Habitat:Terrestrial 0.0018394131
Motility:Yes 0.000494847267
Optimal_temp.:37 0.000660638106
Optimal_temp.:85 0.003035844
Oxygen_Req:Aerobic 0.006324033185
Oxygen_Req:Anaerobic 2.366e-643102
Oxygen_Req:Facultative 2.581e-626201
Pathogenic_in:Animal 0.0068069866
Salinity:Extreme_halophilic 0.008741057
Shape:Irregular_coccus 1.042e-111717
Shape:Rod 1.742e-1345347
Shape:Sphere 2.264e-81619
Temp._range:Hyperthermophilic 2.465e-71723
Temp._range:Mesophilic 0.000711699473



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ORGANISMS ENRICHED FOR GROUP:




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ORGANISMS DEPLETED FOR GROUP:




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PHYLOGENETIC PROFILE SIMILARITY WITH KNOWN PATHWAYS:

Pathways or complexes with absolute value of Pearson coefficient with respect to candidate larger than 0.4 are listed below
The candidate is assumed to exist in orgs listed in section List of organisms containing most genes from the group


Pathway or complex  # Orgs containing it  # of those orgs also containing candidate  Pearson Coeff  
AST-PWY (arginine degradation II (AST pathway))1201010.6570
GLYCOCAT-PWY (glycogen degradation I)2461460.6268
PWY0-1241 (ADP-L-glycero-β-D-manno-heptose biosynthesis)2181360.6203
COBALSYN-PWY (adenosylcobalamin salvage from cobinamide I)1951250.5973
PWY-5111 (CMP-KDO biosynthesis II (from D-arabinose 5-phosphate))3001570.5927
PWY-5918 (heme biosynthesis I)2721470.5759
PWY-4041 (γ-glutamyl cycle)2791480.5686
PWY4FS-7 (phosphatidylglycerol biosynthesis I (plastidic))2911500.5589
PWY0-1319 (CDP-diacylglycerol biosynthesis II)2961510.5563
PHOSLIPSYN-PWY (phospholipid biosynthesis I)2901490.5535
PWY-1269 (CMP-KDO biosynthesis I)3251580.5532
KDO-LIPASYN-PWY (KDO2-lipid A biosynthesis I)2251290.5486
LIPA-CORESYN-PWY (Lipid A-core biosynthesis)1761120.5486
HEME-BIOSYNTHESIS-II (heme biosynthesis from uroporphyrinogen-III I)2861470.5468
PWY-5755 (4-hydroxybenzoate biosynthesis II (bacteria and fungi))81700.5400
PWY-5386 (methylglyoxal degradation I)3051500.5314
GLUTATHIONESYN-PWY (glutathione biosynthesis)3391580.5284
3-HYDROXYPHENYLACETATE-DEGRADATION-PWY (4-hydroxyphenylacetate degradation)149980.5176
NAGLIPASYN-PWY (lipid IVA biosynthesis)3481580.5130
ECASYN-PWY (enterobacterial common antigen biosynthesis)1911120.5051
PWY-5148 (acyl-CoA hydrolysis)2271230.4978
PWY-5913 (TCA cycle variation IV)3011440.4949
GLUCONSUPER-PWY (D-gluconate degradation)2291230.4929
TYRFUMCAT-PWY (tyrosine degradation I)1841080.4926
LIPASYN-PWY (phospholipases)2121170.4887
PWY-5857 (ubiquinone-10 biosynthesis (prokaryotic))1831070.4874
PWY0-981 (taurine degradation IV)106760.4796
ENTNER-DOUDOROFF-PWY (Entner-Doudoroff pathway I)2491270.4769
GLYCOLYSIS-E-D (superpathway of glycolysis and Entner-Doudoroff)2491270.4769
PWY-5855 (ubiquinone-7 biosynthesis (prokaryotic))1911070.4652
GALACTITOLCAT-PWY (galactitol degradation)73590.4621
GLUCARDEG-PWY (D-glucarate degradation I)152920.4561
PWY-3162 (tryptophan degradation V (side chain pathway))94680.4527
P601-PWY (D-camphor degradation)95680.4481
PWY0-541 (cyclopropane fatty acid (CFA) biosynthesis)3001370.4453
PWY0-1182 (trehalose degradation II (trehalase))70560.4446
PWY0-1329 (succinate to cytochrome bo oxidase electron transfer)96680.4436
PWY0-845 (superpathway of pyridoxal 5'-phosphate biosynthesis and salvage)3291430.4354
PWY-5856 (ubiquinone-9 biosynthesis (prokaryotic))2551230.4337
UBISYN-PWY (ubiquinol-8 biosynthesis (prokaryotic))3981580.4325
SULFATE-CYS-PWY (superpathway of sulfate assimilation and cysteine biosynthesis)3651500.4249
POLYISOPRENSYN-PWY (polyisoprenoid biosynthesis (E. coli))116740.4199
CHOLINE-BETAINE-ANA-PWY (choline degradation I)135810.4159
REDCITCYC (TCA cycle variation II)174950.4152
BETSYN-PWY (glycine betaine biosynthesis I (Gram-negative bacteria))138820.4147
PWY0-1299 (arginine dependent acid resistance)1991030.4123
DAPLYSINESYN-PWY (lysine biosynthesis I)3421430.4122
P344-PWY (acrylonitrile degradation)2101060.4081
GLUCARGALACTSUPER-PWY (superpathway of D-glucarate and D-galactarate degradation)135800.4070
PWY0-1335 (NADH to cytochrome bo oxidase electron transfer)112710.4067
LPSSYN-PWY (superpathway of lipopolysaccharide biosynthesis)91620.4042
PYRIDOXSYN-PWY (pyridoxal 5'-phosphate biosynthesis I)4221590.4040
PWY0-1353 (succinate to cytochrome bd oxidase electron transfer)178950.4040
PWY-6134 (tyrosine biosynthesis IV)89610.4028
P184-PWY (protocatechuate degradation I (meta-cleavage pathway))94630.4012



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PAIRWISE GENOME CONTEXT SCORE MATRIX:

  G6463   EG11112   EG11111   EG10947   EG10504   EG10156   
G64650.9990550.9992530.9988280.9996720.9991010.999038
G64630.9995210.9997020.9987530.9994340.999953
EG111120.9992210.9989890.9994310.999523
EG111110.9985560.9991450.999609
EG109470.9988910.99882
EG105040.999507
EG10156



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PAIRWISE BLAST SCORES:

  G6465   G6463   EG11112   EG11111   EG10947   EG10504   EG10156   
G64650.0f0------
G6463-0.0f0-----
EG11112--0.0f0----
EG11111---0.0f0---
EG10947----0.0f0--
EG10504-----0.0f0-
EG10156------0.0f0



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PATHWAYS OR PROTEIN COMPLEX MATCHES IN TARGET ORG:

For each case, all genes involved in the pathway or complex are listed. For each gene we list: a tag indicating whether the gene is part of the candidate list or not, the average and the minimum scores of the gene to the candidate list, the gene name, and its product names.



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GENOME CONTEXT INFORMATION:

Each row corresponds to a replicon in an organism, each column to a gene in the candidate. The second column indicates whether the organims was included in the list used to compute the genome context scores or not. Some organisms are not included because they are phylogenetically too similar to others already in the list.
The number in the matrix indicate the position of the homolog of the gene in the replicon. All numbers are relative to the smaller one, which is assigned a position of zero. Two columns with the same number indicate that the two genes matched the same gene in that organism.

Genome browser links for gene clusters

The links below opens a genome browser BioCyc page for each cluster of genes in the target genome. These pages shows the central gene of the cluster in the target genome and its best homolog in the reference genomes, for the genomes that contain homologs for at least 75% of the genes in the group. Only one genome per phylogenetic cluster of organisms is shown, to keep the list smaller.

EG10156 EG10504 EG11111 EG11112 G6463 (centered at EG10156)
EG10947 G6465 (centered at EG10947)


ORG:REPLICON:CIRC?\GENE  IN REF LIST  G6465   G6463   EG11112   EG11111   EG10947   EG10504   EG10156   
188/623279/623271/623216/623405/623410/623363/623
AAEO224324:0:Tyes----0-699
AAUR290340:2:Tyes---987--0
AAVE397945:0:Tyes3141330-646-132
ABAC204669:0:Tyes1190--382308643205
ABAU360910:0:Tyes2641203627012037263402033
ABOR393595:0:Tyes81501132
ABUT367737:0:Tyes-8240---823
ACAU438753:0:Tyes-3890-537-390
ACEL351607:0:Tyes-1469---1090
ACRY349163:8:Tyes-18740-27920221875
ADEH290397:0:Tyes-13200--0
AEHR187272:0:Tyes2622264-25001
AFER243159:0:Tyes20166325019822867
AHYD196024:0:Tyes111501332
ALAI441768:0:Tyes----0--
AMAR234826:0:Tyes------0
AMAR329726:9:Tyes--3001-02627-
AMET293826:0:Tyes---155604386-
ANAE240017:0:Tyes-----01560
AORE350688:0:Tyes---20170509449
APHA212042:0:Tyes------0
APLE416269:0:Tyes0---393750-
APLE434271:0:Tno0---361724-
ASAL382245:5:Tyes21281301011
ASP1667:3:Tyes---306--0
ASP232721:2:Tyes15010147-1560-1
ASP62928:0:Tyes24111098224422950
ASP62977:0:Tyes2300853399-22980854
ASP76114:2:Tyes1479125431476-0
AVAR240292:3:Tyes--1604--5720
BABO262698:1:Tno-26119-0-260
BAFZ390236:2:Fyes-----0-
BAMB339670:3:Tno5622343120212056502342
BAMB398577:3:Tno55021711195217255302170
BAMY326423:0:Tyes----014895
BANT260799:0:Tno----012775
BANT261594:2:Tno----011866
BANT568206:2:Tyes----011665
BANT592021:2:Tno----011867
BAPH198804:0:Tyes---17002-
BAPH372461:0:Tyes---11202-
BBAC264462:0:Tyes-1101839-0-1100
BBAC360095:0:Tyes-53--0-54
BBRO257310:0:Tyes3886198439521983388401987
BBUR224326:21:Fno-----0-
BCAN483179:1:Tno-28419-0-283
BCEN331271:2:Tno-14335931434022671432
BCEN331272:3:Tyes-21461185214760902145
BCER226900:1:Tyes----013484
BCER288681:0:Tno----012473
BCER315749:1:Tyes----011363
BCER405917:1:Tyes----011967
BCER572264:1:Tno----011665
BCIC186490:0:Tyes56--05559-
BCLA66692:0:Tyes----0179-
BFRA272559:1:Tyes-----0-
BFRA295405:0:Tno-----0-
BGAR290434:2:Fyes-----0-
BHAL272558:0:Tyes----0156-
BHEN283166:0:Tyes-55--0-762
BHER314723:0:Fyes-----0-
BJAP224911:0:Fyes-37732893-3362-0
BLIC279010:0:Tyes---543014088
BMAL243160:1:Tno769914013867661219915
BMAL320388:1:Tno21611135021925132
BMAL320389:1:Tyes1187135402363118426711355
BMEL224914:1:Tno-0256-275-1
BMEL359391:1:Tno-25319-0-252
BOVI236:1:Tyes-227--0-226
BPAR257311:0:Tno3248242133282420324602424
BPER257313:0:Tyes2264-26501069261
BPET94624:0:Tyes64317340173565540351731
BPSE272560:1:Tyes171909612196171623101
BPSE320372:1:Tno203909512594203627451
BPSE320373:1:Tno194608232539194326651
BPUM315750:0:Tyes----4020-
BQUI283165:0:Tyes-198--0-552
BSP107806:2:Tyes---17502-
BSP36773:2:Tyes61624291253243061902428
BSP376:0:Tyes-10120-525-1011
BSUB:0:Tyes----015297
BSUI204722:1:Tyes-27920-0-278
BSUI470137:1:Tno-286--0-285
BTHA271848:1:Tno78901713212779222351
BTHE226186:0:Tyes-----18450
BTHU281309:1:Tno----011362
BTHU412694:1:Tno----012676
BTRI382640:1:Tyes-54--0-55
BTUR314724:0:Fyes-----0-
BVIE269482:7:Tyes53922281163222954202227
BWEI315730:4:Tyes---35132700520
BXEN266265:1:Tyes---0---
CACE272562:1:Tyes-1823-812031181824
CAULO:0:Tyes-16201024-1142-0
CBEI290402:0:Tyes-39002359--03899
CBLO203907:0:Tyes1---04-
CBLO291272:0:Tno1--6604-
CBOT36826:1:Tno----034053459
CBOT441770:0:Tyes----033603414
CBOT441771:0:Tno----032263281
CBOT441772:1:Tno----034313485
CBOT498213:1:Tno----034583512
CBOT508765:1:Tyes----0220673
CBOT515621:2:Tyes----036023656
CBOT536232:0:Tno----037113765
CBUR227377:1:Tyes2---078
CBUR360115:1:Tno2---067
CBUR434922:2:Tno2---067
CCHL340177:0:Tyes------0
CCON360104:2:Tyes----0--
CCUR360105:0:Tyes----0--
CDES477974:0:Tyes----0241173
CDIF272563:1:Tyes---137508412
CDIP257309:0:Tyes---0-2181655
CEFF196164:0:Fyes-----02094
CFET360106:0:Tyes-30-624-2
CGLU196627:0:Tyes-----0-
CHOM360107:1:Tyes-0-----
CHUT269798:0:Tyes-----0-
CHYD246194:0:Tyes----384058
CJAP155077:0:Tyes317131801516
CJEI306537:0:Tyes---202-0-
CJEJ192222:0:Tyes-02--4681
CJEJ195099:0:Tno-02--4961
CJEJ354242:2:Tyes-02--4431
CJEJ360109:0:Tyes-20--12501
CJEJ407148:0:Tno-02--4471
CKLU431943:1:Tyes-2271--02012270
CMIC31964:2:Tyes---1242-0-
CMIC443906:2:Tyes---0-999-
CNOV386415:0:Tyes----2113510
CPEL335992:0:Tyes----0--
CPER195102:1:Tyes----024581452
CPER195103:0:Tno----025861635
CPER289380:3:Tyes----022741370
CPHY357809:0:Tyes---0-3058-
CPSY167879:0:Tyes31288129010127
CRUT413404:0:Tyes-58--149057
CSAL290398:0:Tyes7817877830662785786
CSP501479:7:Fyes------0
CSP501479:8:Fyes-0260-1389--
CSP78:2:Tyes-5840-564-585
CTEP194439:0:Tyes--154---0
CTET212717:0:Tyes----0-2347
CVES412965:0:Tyes----127043
CVIO243365:0:Tyes24423464302345028592347
DARO159087:0:Tyes9702776874277597402777
DDES207559:0:Tyes-19321930-036291931
DETH243164:0:Tyes------0
DGEO319795:1:Tyes-7590---760
DHAF138119:0:Tyes----05011699
DNOD246195:0:Tyes0171195-560689170
DOLE96561:0:Tyes-17641762-203201763
DPSY177439:2:Tyes-11047759062700
DRAD243230:3:Tyes-01108---2
DRED349161:0:Tyes----0241178
DSHI398580:5:Tyes--0-481-1564
DSP216389:0:Tyes------0
DSP255470:0:Tno------0
DVUL882:1:Tyes-15811583-22301582
ECAN269484:0:Tyes----0-11
ECAR218491:0:Tyes2138150912
ECHA205920:0:Tyes----16-0
ECOL199310:0:Tno111501342
ECOL316407:0:Tno111501342
ECOL331111:6:Tno121401432
ECOL362663:0:Tno111501342
ECOL364106:1:Tno21215023143
ECOL405955:2:Tyes16010-18-1
ECOL409438:6:Tyes121601452
ECOL413997:0:Tno111501342
ECOL439855:4:Tno25095101049
ECOL469008:0:Tno2128130911
ECOL481805:0:Tno21281309-
ECOL585034:0:Tno121601452
ECOL585035:0:Tno1611001892
ECOL585055:0:Tno111501342
ECOL585056:2:Tno121601452
ECOL585057:0:Tno215101701114
ECOL585397:0:Tno18112020112
ECOL83334:0:Tno111501342
ECOLI:0:Tno111501342
ECOO157:0:Tno117111101191102
EFAE226185:3:Tyes---50528740-
EFER585054:1:Tyes111501342
ELIT314225:0:Tyes-19442132-0-2549
ERUM254945:0:Tyes----0-202
ERUM302409:0:Tno----0-203
ESP42895:1:Tyes17111019102
FALN326424:0:Tyes-85852290-4795922
FJOH376686:0:Tyes-19310----
FMAG334413:1:Tyes----0791471
FNOD381764:0:Tyes---139111807720
FNUC190304:0:Tyes----01177-
FPHI484022:1:Tyes365---01644-
FRANT:0:Tno623---3380-
FSP106370:0:Tyes-61234800-353-
FSP1855:0:Tyes-53918046306--0
FSUC59374:0:Tyes------0
FTUL351581:0:Tno413---2250-
FTUL393011:0:Tno349---1850-
FTUL393115:0:Tyes607---3300-
FTUL401614:0:Tyes0---351548-
FTUL418136:0:Tno0---1015515-
FTUL458234:0:Tno370---2030-
GBET391165:0:Tyes-619926-2220773
GFOR411154:0:Tyes--224--0-
GKAU235909:1:Tyes----0135-
GMET269799:1:Tyes---02268576-
GOXY290633:5:Tyes-01040-11423941
GSUL243231:0:Tyes---54001702-
GTHE420246:1:Tyes----0115-
GURA351605:0:Tyes---371101855-
GVIO251221:0:Tyes-337627-3070-
HACI382638:1:Tyes-0-----
HARS204773:0:Tyes0135013461351320201349
HAUR316274:2:Tyes-10----
HCHE349521:0:Tyes931609632
HDUC233412:0:Tyes763---6840-
HHAL349124:0:Tyes295-078
HHEP235279:0:Tyes-1----0
HINF281310:0:Tyes1142--13570441-
HINF374930:0:Tyes932--7954350-
HINF71421:0:Tno1445--12890421-
HMOD498761:0:Tyes----0278220
HNEP81032:0:Tyes-01201-8863211
HPY:0:Tno-0-----
HPYL357544:1:Tyes-0-----
HPYL85963:0:Tno-0-----
HSOM205914:1:Tyes107--1493700-
HSOM228400:0:Tno163--2124430-
ILOI283942:0:Tyes31281301011
JSP290400:1:Tyes-28811696-29-0
JSP375286:0:Tyes0138113771382222601380
KPNE272620:2:Tyes3035302430283023303730260
KRAD266940:2:Fyes--19991615-0904
LACI272621:0:Tyes-----0-
LBIF355278:2:Tyes-11282--930
LBIF456481:2:Tno-11341---0
LBOR355276:1:Tyes-12130--4011214
LBOR355277:1:Tno-16100--22591609
LBRE387344:2:Tyes----34032
LCAS321967:1:Tyes----0623-
LCHO395495:0:Tyes63973130397203262974
LDEL321956:0:Tyes----11370-
LDEL390333:0:Tyes----10930-
LGAS324831:0:Tyes----11990-
LHEL405566:0:Tyes-----0-
LINN272626:1:Tno----1300-
LINT189518:1:Tyes-20120--6582013
LINT267671:1:Tno-16920--27051691
LINT363253:3:Tyes0549551-49-550
LJOH257314:0:Tyes----12710-
LLAC272622:5:Tyes---015952076-
LLAC272623:0:Tyes---015441904-
LMES203120:1:Tyes---1604-0-
LMON169963:0:Tno----1360-
LMON265669:0:Tyes----1510-
LPLA220668:0:Tyes----04841205
LPNE272624:0:Tno133639013390871341391
LPNE297245:1:Fno124838212510821253383
LPNE297246:1:Fyes123238412350821237385
LPNE400673:0:Tno0124831677159351247
LREU557436:0:Tyes----0-1450
LSAK314315:0:Tyes---01059988-
LSPH444177:1:Tyes----04477-
LWEL386043:0:Tyes----1350-
LXYL281090:0:Tyes-----0-
MABS561007:1:Tyes---0-32993792
MAER449447:0:Tyes--3180-0-1302
MAQU351348:2:Tyes2209-2100208-
MAVI243243:0:Tyes---0-3507-
MBOV233413:0:Tno---181-0-
MBOV410289:0:Tno---180-0-
MCAP243233:0:Tyes059-18276
MEXT419610:0:Tyes-37040-3132-3705
MFLA265072:0:Tyes82220877318368260207
MGIL350054:3:Tyes---0-360539
MLEP272631:0:Tyes---0-1098-
MLOT266835:2:Tyes-3790-707-2515
MMAG342108:0:Tyes-01618-139922171
MMAR394221:0:Tyes-210-642-22
MMAZ192952:0:Tyes----0--
MPET420662:1:Tyes013363491337156622951335
MSME246196:0:Tyes---4597-0-
MSP164756:1:Tno---1191-0-
MSP164757:0:Tno---1189-0-
MSP189918:2:Tyes---1210-0-
MSP266779:3:Tyes-0348-436-1625
MSP400668:0:Tyes39610078
MSP409:2:Tyes-03073-4181-1
MSUC221988:0:Tyes822--4578200-
MTBCDC:0:Tno---204-0-
MTBRV:0:Tno---187-0-
MTHE264732:0:Tyes----02357-
MTUB336982:0:Tno---178-0-
MTUB419947:0:Tyes---185-0-
MVAN350058:0:Tyes---0-390-
MXAN246197:0:Tyes-51746210-25525175
NARO279238:0:Tyes-437766-79110020
NEUR228410:0:Tyes88615742074157302501575
NEUT335283:2:Tyes21861755380175403081756
NFAR247156:2:Tyes---0-47750
NGON242231:0:Tyes0194143919510271481193
NHAM323097:2:Tyes-613387-0-612
NMEN122586:0:Tno4446554365614650654
NMEN122587:0:Tyes7339340935179145933
NMEN272831:0:Tno3755754257612740574
NMEN374833:0:Tno0223135422410151401222
NMUL323848:3:Tyes020532510205226092054
NOCE323261:1:Tyes020422213-67822152041
NSEN222891:0:Tyes------0
NSP103690:6:Tyes--1658--18940
NSP35761:1:Tyes--04114-3725-
NSP387092:0:Tyes-143145-11630144
NWIN323098:0:Tyes-164-83-0
OANT439375:5:Tyes-0261-328-1
OCAR504832:0:Tyes-0209-498-2
OIHE221109:0:Tyes----0158110
PACN267747:0:Tyes--0----
PAER208963:0:Tyes81501032
PAER208964:0:Tno29510078
PARC259536:0:Tyes1185111001465123510171109
PATL342610:0:Tyes944059123
PCAR338963:0:Tyes-19551953-010951954
PCRY335284:1:Tyes1319124401699141611351243
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