CANDIDATE ID: 343

CANDIDATE ID: 343

NUMBER OF GENES: 7
AVERAGE SCORE:    9.9943990e-1 (range=[0.0,1.0])
AVERAGE MINIMUM BLAST P-VAL:    1.4285714e-1

Gene List
List of organisms containing most genes from the group
    Phylogenetic tree highlighting these organisms (opens new page)
List of organisms containing very few or no genes from the group
List of organisms enriched for group
List of organisms depleted for group
Phylogenetic profile similarity with known pathways
Pairwise genome context scores
Pairwise Blast scores
Pathway or protein complex matches in target organism
Genome context matrix
    Genes and their orthologs in genome browser BioCyc pages



GENE LIST:

- G7493 (yqeA) (b2874)
   Products of gene:
     - G7493-MONOMER (predicted amino acid kinase)

- G7489 (ygeW) (b2870)
   Products of gene:
     - G7489-MONOMER (putative carbamoyltransferase)

- G6861 (ydgI) (b1605)
   Products of gene:
     - ARCD-MONOMER (ArcD APC transporter)

- G6188 (yahI) (b0323)
   Products of gene:
     - G6188-MONOMER (predicted carbamate kinase-like protein)

- EG12384 (ybcF) (b0521)
   Products of gene:
     - EG12384-MONOMER (predicted carbamate kinase)

- EG10069 (argI) (b4254)
   Products of gene:
     - CHAINI-MONOMER (ArgI)
     - ORNCARBAMTRANSFERI-CPLX (ornithine carbamoyltransferase chain I)
       Reactions:
        L-ornithine + carbamoyl-phosphate  =  L-citrulline + phosphate + H+
         In pathways
         ARGORNPROST-PWY (ARGORNPROST-PWY)
         ARGDEGRAD-PWY (ARGDEGRAD-PWY)
         PWY-5004 (PWY-5004)
         ARG+POLYAMINE-SYN (superpathway of arginine and polyamine biosynthesis)
         ARGININE-SYN4-PWY (ARGININE-SYN4-PWY)
         CITRULLINE-DEG-PWY (CITRULLINE-DEG-PWY)
         PWY-4981 (PWY-4981)
         PWY-4984 (PWY-4984)
         ARGSYN-PWY (arginine biosynthesis I)
         ARGSYNBSUB-PWY (ARGSYNBSUB-PWY)
         CITRULBIO-PWY (CITRULBIO-PWY)

- EG10067 (argF) (b0273)
   Products of gene:
     - CHAINF-MONOMER (ArgF)
     - ORNCARBAMTRANSFERF-CPLX (ornithine carbamoyltransferase chain F)
       Reactions:
        L-ornithine + carbamoyl-phosphate  =  L-citrulline + phosphate + H+
         In pathways
         ARGORNPROST-PWY (ARGORNPROST-PWY)
         ARGDEGRAD-PWY (ARGDEGRAD-PWY)
         PWY-5004 (PWY-5004)
         ARG+POLYAMINE-SYN (superpathway of arginine and polyamine biosynthesis)
         ARGININE-SYN4-PWY (ARGININE-SYN4-PWY)
         CITRULLINE-DEG-PWY (CITRULLINE-DEG-PWY)
         PWY-4981 (PWY-4981)
         PWY-4984 (PWY-4984)
         ARGSYN-PWY (arginine biosynthesis I)
         ARGSYNBSUB-PWY (ARGSYNBSUB-PWY)
         CITRULBIO-PWY (CITRULBIO-PWY)



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ORGANISMS CONTAINING AT LEAST 6 GENES FROM THE GROUP:

Total number of orgs: 172
Effective number of orgs (counting one per cluster within 468 clusters): 103

Organism list
Homologs in each organism in the list
Features enriched in organism list


Follow (ncbi) link, when present, to find the set of organism features for each organism
Org ID  Org Name  # genes in group found in org  
VFIS312309 ncbi Vibrio fischeri ES1146
TTEN273068 ncbi Thermoanaerobacter tengcongensis MB46
TSP1755 Thermoanaerobacter sp.6
TROS309801 ncbi Thermomicrobium roseum DSM 51596
TPSE340099 ncbi Thermoanaerobacter pseudethanolicus ATCC 332236
TLET416591 ncbi Thermotoga lettingae TMO6
TKOD69014 ncbi Thermococcus kodakarensis KOD16
TDEN243275 ncbi Treponema denticola ATCC 354056
TACI273075 ncbi Thermoplasma acidophilum DSM 17286
STYP99287 ncbi Salmonella enterica enterica serovar Typhimurium str. LT27
SSUI391296 ncbi Streptococcus suis 98HAH336
SSUI391295 ncbi Streptococcus suis 05ZYH336
SSP1148 ncbi Synechocystis sp. PCC 68036
SSON300269 ncbi Shigella sonnei Ss0467
SPYO370554 ncbi Streptococcus pyogenes MGAS107506
SPYO370553 ncbi Streptococcus pyogenes MGAS20966
SPYO370552 ncbi Streptococcus pyogenes MGAS102706
SPYO370551 ncbi Streptococcus pyogenes MGAS94296
SPYO319701 ncbi Streptococcus pyogenes MGAS61806
SPYO293653 ncbi Streptococcus pyogenes MGAS50056
SPYO286636 ncbi Streptococcus pyogenes MGAS103946
SPYO198466 ncbi Streptococcus pyogenes MGAS3156
SPYO193567 ncbi Streptococcus pyogenes SSI-16
SPYO186103 ncbi Streptococcus pyogenes MGAS82326
SPYO160490 ncbi Streptococcus pyogenes M1 GAS6
SPRO399741 ncbi Serratia proteamaculans 5687
SPNE488221 ncbi Streptococcus pneumoniae 705856
SPNE487214 ncbi Streptococcus pneumoniae Hungary19A-66
SPNE487213 ncbi Streptococcus pneumoniae Taiwan19F-146
SPNE171101 ncbi Streptococcus pneumoniae R66
SPNE170187 ncbi Streptococcus pneumoniae G546
SPNE1313 Streptococcus pneumoniae6
SMUT210007 ncbi Streptococcus mutans UA1596
SMEL266834 ncbi Sinorhizobium meliloti 10217
SMED366394 ncbi Sinorhizobium medicae WSM4197
SMAR399550 ncbi Staphylothermus marinus F16
SLAC55218 Ruegeria lacuscaerulensis6
SHIGELLA ncbi Shigella flexneri 2a str. 2457T7
SHAL458817 ncbi Shewanella halifaxensis HAW-EB46
SHAE279808 ncbi Staphylococcus haemolyticus JCSC14356
SGOR29390 Streptococcus gordonii Challis6
SFLE373384 ncbi Shigella flexneri 5 str. 84017
SFLE198214 ncbi Shigella flexneri 2a str. 3017
SEPI176280 ncbi Staphylococcus epidermidis ATCC 122287
SEPI176279 ncbi Staphylococcus epidermidis RP62A7
SENT454169 ncbi Salmonella enterica enterica serovar Heidelberg str. SL4767
SENT321314 ncbi Salmonella enterica enterica serovar Choleraesuis str. SC-B677
SENT295319 ncbi Salmonella enterica enterica serovar Paratyphi A str. ATCC 91507
SENT220341 ncbi Salmonella enterica enterica serovar Typhi str. CT187
SENT209261 ncbi Salmonella enterica enterica serovar Typhi str. Ty27
SBOY300268 ncbi Shigella boydii Sb2277
SAUR93062 ncbi Staphylococcus aureus aureus COL7
SAUR93061 ncbi Staphylococcus aureus aureus NCTC 83257
SAUR426430 ncbi Staphylococcus aureus aureus Newman7
SAUR418127 ncbi Staphylococcus aureus aureus Mu37
SAUR367830 Staphylococcus aureus aureus USA3007
SAUR359787 ncbi Staphylococcus aureus aureus JH17
SAUR359786 ncbi Staphylococcus aureus aureus JH97
SAUR282459 ncbi Staphylococcus aureus aureus MSSA4767
SAUR282458 ncbi Staphylococcus aureus aureus MRSA2527
SAUR273036 ncbi Staphylococcus aureus RF1227
SAUR196620 ncbi Staphylococcus aureus aureus MW27
SAUR158879 ncbi Staphylococcus aureus aureus N3157
SAUR158878 ncbi Staphylococcus aureus aureus Mu507
SAGA211110 ncbi Streptococcus agalactiae NEM3167
SAGA208435 ncbi Streptococcus agalactiae 2603V/R7
SAGA205921 ncbi Streptococcus agalactiae A9097
PSYR205918 ncbi Pseudomonas syringae pv. syringae B728a7
PSTU379731 ncbi Pseudomonas stutzeri A15016
PPUT76869 ncbi Pseudomonas putida GB-17
PPUT351746 ncbi Pseudomonas putida F17
PPUT160488 ncbi Pseudomonas putida KT24407
PPRO298386 ncbi Photobacterium profundum SS97
PPEN278197 ncbi Pediococcus pentosaceus ATCC 257457
PMOB403833 ncbi Petrotoga mobilis SJ956
PMEN399739 ncbi Pseudomonas mendocina ymp6
PHOR70601 ncbi Pyrococcus horikoshii OT36
PFUR186497 ncbi Pyrococcus furiosus DSM 36386
PFLU220664 ncbi Pseudomonas fluorescens Pf-57
PFLU216595 ncbi Pseudomonas fluorescens SBW257
PFLU205922 ncbi Pseudomonas fluorescens Pf0-17
PENT384676 ncbi Pseudomonas entomophila L487
PAER208964 ncbi Pseudomonas aeruginosa PAO17
PAER208963 ncbi Pseudomonas aeruginosa UCBPP-PA147
PAER178306 ncbi Pyrobaculum aerophilum IM26
PACN267747 ncbi Propionibacterium acnes KPA1712027
PABY272844 ncbi Pyrococcus abyssi GE56
NSP35761 Nocardioides sp.7
MVAN350058 ncbi Mycobacterium vanbaalenii PYR-17
MTHE264732 ncbi Moorella thermoacetica ATCC 390736
MSP266779 ncbi Chelativorans sp. BNC16
MPEN272633 ncbi Mycoplasma penetrans HF-26
MMAR368407 ncbi Methanoculleus marisnigri JR16
MCAP340047 ncbi Mycoplasma capricolum capricolum ATCC 273436
MART243272 ncbi Mycoplasma arthritidis 158L3-16
LSPH444177 ncbi Lysinibacillus sphaericus C3-416
LSAK314315 ncbi Lactobacillus sakei sakei 23K7
LREU557436 ncbi Lactobacillus reuteri DSM 200166
LMON265669 ncbi Listeria monocytogenes 4b F23656
LMON169963 ncbi Listeria monocytogenes EGD-e6
LLAC272623 ncbi Lactococcus lactis lactis Il14037
LLAC272622 ncbi Lactococcus lactis cremoris SK117
LBRE387344 ncbi Lactobacillus brevis ATCC 3677
HMOD498761 ncbi Heliobacterium modesticaldum Ice16
HCHE349521 ncbi Hahella chejuensis KCTC 23967
HBUT415426 ncbi Hyperthermus butylicus DSM 54566
FNOD381764 ncbi Fervidobacterium nodosum Rt17-B16
FMAG334413 ncbi Finegoldia magna ATCC 293286
ESP42895 Enterobacter sp.7
EFER585054 ncbi Escherichia fergusonii ATCC 354697
EFAE226185 ncbi Enterococcus faecalis V5836
ECOO157 ncbi Escherichia coli O157:H7 EDL9337
ECOL83334 Escherichia coli O157:H77
ECOL585397 ncbi Escherichia coli ED1a7
ECOL585057 ncbi Escherichia coli IAI397
ECOL585056 ncbi Escherichia coli UMN0267
ECOL585055 ncbi Escherichia coli 559897
ECOL585035 ncbi Escherichia coli S887
ECOL585034 ncbi Escherichia coli IAI17
ECOL481805 ncbi Escherichia coli ATCC 87397
ECOL469008 ncbi Escherichia coli BL21(DE3)7
ECOL439855 ncbi Escherichia coli SMS-3-57
ECOL413997 ncbi Escherichia coli B str. REL6067
ECOL409438 ncbi Escherichia coli SE117
ECOL405955 ncbi Escherichia coli APEC O17
ECOL364106 ncbi Escherichia coli UTI897
ECOL362663 ncbi Escherichia coli 5367
ECOL331111 ncbi Escherichia coli E24377A7
ECOL316407 ncbi Escherichia coli K-12 substr. W31107
ECOL199310 ncbi Escherichia coli CFT0737
DSHI398580 ncbi Dinoroseobacter shibae DFL 126
DNOD246195 ncbi Dichelobacter nodosus VCS1703A6
CVIO243365 ncbi Chromobacterium violaceum ATCC 124727
CSP78 Caulobacter sp.6
CPHY357809 ncbi Clostridium phytofermentans ISDg6
CPER289380 ncbi Clostridium perfringens SM1017
CPER195103 ncbi Clostridium perfringens ATCC 131247
CPER195102 ncbi Clostridium perfringens 137
CKOR374847 ncbi Candidatus Korarchaeum cryptofilum OPF86
CBOT536232 ncbi Clostridium botulinum A2 str. Kyoto7
CBOT515621 ncbi Clostridium botulinum Ba4 str. 6577
CBOT508765 ncbi Clostridium botulinum B str. Eklund 17B6
CBOT498213 ncbi Clostridium botulinum B1 str. Okra7
CBOT441772 ncbi Clostridium botulinum F str. Langeland7
CBOT441771 ncbi Clostridium botulinum A str. Hall7
CBOT441770 ncbi Clostridium botulinum A str. ATCC 193977
CBOT36826 Clostridium botulinum A7
CBEI290402 ncbi Clostridium beijerinckii NCIMB 80526
BXEN266265 ncbi Burkholderia xenovorans LB4007
BTUR314724 ncbi Borrelia turicatae 91E1356
BTHU412694 ncbi Bacillus thuringiensis Al Hakam7
BTHU281309 ncbi Bacillus thuringiensis serovar konkukian str. 97-277
BTHA271848 ncbi Burkholderia thailandensis E2647
BPSE320373 ncbi Burkholderia pseudomallei 6687
BPSE320372 ncbi Burkholderia pseudomallei 1710b7
BPSE272560 ncbi Burkholderia pseudomallei K962437
BMAL320389 ncbi Burkholderia mallei NCTC 102477
BMAL320388 ncbi Burkholderia mallei SAVP17
BMAL243160 ncbi Burkholderia mallei ATCC 233447
BLIC279010 ncbi Bacillus licheniformis ATCC 145807
BHER314723 ncbi Borrelia hermsii DAH6
BCER405917 Bacillus cereus W7
BCER315749 ncbi Bacillus cytotoxicus NVH 391-987
BCER226900 ncbi Bacillus cereus ATCC 145797
BAMB398577 ncbi Burkholderia ambifaria MC40-67
ASAL382245 ncbi Aeromonas salmonicida salmonicida A4497
APLE434271 ncbi Actinobacillus pleuropneumoniae serovar 3 str. JL036
APLE416269 ncbi Actinobacillus pleuropneumoniae L206
ANAE240017 Actinomyces oris MG16
AMET293826 ncbi Alkaliphilus metalliredigens QYMF6
AHYD196024 Aeromonas hydrophila dhakensis7
ABAC204669 ncbi Candidatus Koribacter versatilis Ellin3456


Names of the homologs of the genes in the group in each of these orgs
  G7493   G7489   G6861   G6188   EG12384   EG10069   EG10067   
VFIS312309 VFA1146VF0407VFA1146VFA1146VF0407VF0407
TTEN273068 TTE0533TTE0532TTE0533TTE0533TTE0532TTE0532
TSP1755 TETH514_0485TETH514_0484TETH514_0485TETH514_0485TETH514_0484TETH514_0484
TROS309801 TRD_0571TRD_1429TRD_0571TRD_0571TRD_1429TRD_1429
TPSE340099 TETH39_1747TETH39_1748TETH39_1747TETH39_1747TETH39_1748TETH39_1748
TLET416591 TLET_0827TLET_1729TLET_0827TLET_0827TLET_1729TLET_1729
TKOD69014 TK2158TK0871TK2158TK2158TK0871TK0871
TDEN243275 TDE_2476TDE_0929TDE_2476TDE_2476TDE_0929TDE_0929
TACI273075 TA1350TA1330TA1350TA1350TA1330TA1330
STYP99287 STM4466STM4469STM1477STM4466STM0532STM4469STM4469
SSUI391296 SSU98_0626SSU98_0625SSU98_0626SSU98_0626SSU98_0625SSU98_0625
SSUI391295 SSU05_0627SSU05_0626SSU05_0627SSU05_0627SSU05_0626SSU05_0626
SSP1148 SLL0573SLL0902SLL0573SLL0573SLL0902SLL0902
SSON300269 SSO_3025SSO_3021SSO_1555SSO_0310SSO_0497SSO_4436SSO_4436
SPYO370554 MGAS10750_SPY1377MGAS10750_SPY1380MGAS10750_SPY1377MGAS10750_SPY1377MGAS10750_SPY1380MGAS10750_SPY1380
SPYO370553 MGAS2096_SPY1289MGAS2096_SPY1292MGAS2096_SPY1289MGAS2096_SPY1289MGAS2096_SPY1292MGAS2096_SPY1292
SPYO370552 MGAS10270_SPY1285MGAS10270_SPY1288MGAS10270_SPY1285MGAS10270_SPY1285MGAS10270_SPY1288MGAS10270_SPY1288
SPYO370551 MGAS9429_SPY1264MGAS9429_SPY1267MGAS9429_SPY1264MGAS9429_SPY1264MGAS9429_SPY1267MGAS9429_SPY1267
SPYO319701 M28_SPY1208M28_SPY1211M28_SPY1208M28_SPY1208M28_SPY1211M28_SPY1211
SPYO293653 M5005_SPY1270M5005_SPY1273M5005_SPY1270M5005_SPY1270M5005_SPY1273M5005_SPY1273
SPYO286636 M6_SPY1291M6_SPY1294M6_SPY1291M6_SPY1291M6_SPY1294M6_SPY1294
SPYO198466 SPYM3_1191SPYM3_1194SPYM3_1191SPYM3_1191SPYM3_1194SPYM3_1194
SPYO193567 SPS0671SPS0668SPS0671SPS0671SPS0668SPS0668
SPYO186103 SPYM18_1558SPYM18_1562SPYM18_1558SPYM18_1558SPYM18_1562SPYM18_1562
SPYO160490 SPY1541SPY1544SPY1541SPY1541SPY1544SPY1544
SPRO399741 SPRO_3187SPRO_3190SPRO_2587SPRO_3187SPRO_3187SPRO_0554SPRO_0554
SPNE488221 SP70585_2277SP70585_2276SP70585_2277SP70585_2277SP70585_2276SP70585_2276
SPNE487214 SPH_2342SPH_2341SPH_2342SPH_2342SPH_2341SPH_2341
SPNE487213 SPT_2162SPT_2161SPT_2162SPT_2162SPT_2161SPT_2161
SPNE171101 SPR1958SPR1957SPR1958SPR1958SPR1957SPR1957
SPNE170187 SPN16013SPN16014SPN16013SPN16013SPN16014SPN16014
SPNE1313 SPJ_2175SPJ_2174SPJ_2175SPJ_2175SPJ_2174SPJ_2174
SMUT210007 SMU_265SMU_563SMU_265SMU_265SMU_563SMU_563
SMEL266834 SMA0697SMA0695SMA1668SMA0697SMA0697SMA0695SMA0695
SMED366394 SMED_5204SMED_5203SMED_5198SMED_5204SMED_5204SMED_5203SMED_5203
SMAR399550 SMAR_0235SMAR_0278SMAR_0235SMAR_0235SMAR_0224SMAR_0224
SLAC55218 SL1157_0483SL1157_0482SL1157_0483SL1157_0483SL1157_0482SL1157_0482
SHIGELLA ARCCARGIS1758ARCCARCCARGIARGI
SHAL458817 SHAL_0688SHAL_0635SHAL_0639SHAL_0639SHAL_0687SHAL_0687
SHAE279808 SH0259SH0368SH0259SH0259SH0258SH0258
SGOR29390 SGO_1591SGO_1592SGO_1591SGO_1591SGO_1592SGO_1592
SFLE373384 SFV_0479SFV_4239SFV_1620SFV_0479SFV_0479SFV_4239SFV_4239
SFLE198214 AAN42106.1AAN45654.1AAN43209.1AAN42106.1AAN42106.1AAN45654.1AAN45654.1
SEPI176280 SE_0102SE_2216SE_0105SE_0228SE_0228SE_0103SE_0103
SEPI176279 SERP2352SERP2249SERP2247SERP2352SERP2352SERP2351SERP2351
SENT454169 SEHA_C4868SEHA_C4872SEHA_C1645SEHA_C4868SEHA_C0640SEHA_C4872SEHA_C4872
SENT321314 SCH_4320SCH_4324SCH_1495SCH_4320SCH_0571SCH_4324SCH_4324
SENT295319 SPA4266SPA4269SPA1378SPA4266SPA2191SPA4269SPA4269
SENT220341 STY4804STY4807STY1645STY4804STY0580STY4807STY4807
SENT209261 T4500T4503T1345T4500T2329T4503T4503
SBOY300268 SBO_3110SBO_4188SBO_1531SBO_3110SBO_3110SBO_4188SBO_4188
SAUR93062 SACOL1182SACOL2656SACOL2655SACOL2654SACOL2654SACOL1181SACOL1181
SAUR93061 SAOUHSC_01129SAOUHSC_02968SAOUHSC_02967SAOUHSC_02965SAOUHSC_02965SAOUHSC_01128SAOUHSC_01128
SAUR426430 NWMN_1079NWMN_2533NWMN_2532NWMN_2531NWMN_2531NWMN_1078NWMN_1078
SAUR418127 SAHV_1160SAHV_2618SAHV_2617SAHV_2616SAHV_2616SAHV_1159SAHV_1159
SAUR367830 SAUSA300_1063SAUSA300_2569SAUSA300_0064SAUSA300_2567SAUSA300_2567SAUSA300_1062SAUSA300_0062
SAUR359787 SAURJH1_1253SAURJH1_2714SAURJH1_2713SAURJH1_2712SAURJH1_2712SAURJH1_1252SAURJH1_1252
SAUR359786 SAURJH9_1228SAURJH9_2658SAURJH9_2657SAURJH9_2656SAURJH9_2656SAURJH9_1227SAURJH9_1227
SAUR282459 SAS1103SAS2520SAS2519SAS2518SAS2518SAS1102SAS1102
SAUR282458 SAR1143SAR2713SAR2712SAR2711SAR2711SAR1142SAR1142
SAUR273036 SAB1034SAB2509CSAB2508CSAB2507CSAB2507CSAB1033SAB1033
SAUR196620 MW1051MW2555MW2554MW2553MW2553MW1050MW1050
SAUR158879 SA1013SA2427SA2426SA2425SA2425SA1012SA1012
SAUR158878 SAV1170SAV2634SAV2633SAV2632SAV2632SAV1169SAV1169
SAGA211110 GBS2084GBS2124GBS2125GBS2084GBS2084GBS2085GBS2085
SAGA208435 SAG_2125SAG_2165SAG_2166SAG_2125SAG_2125SAG_2126SAG_2126
SAGA205921 SAK_2064SAK_2123SAK_2124SAK_2064SAK_2064SAK_2065SAK_2065
PSYR205918 PSYR_2686PSYR_2685PSYR_2683PSYR_2686PSYR_2686PSYR_2685PSYR_2685
PSTU379731 PST_0674PST_3977PST_3980PST_3980PST_0675PST_3979
PPUT76869 PPUTGB1_0998PPUTGB1_0999PPUTGB1_1001PPUTGB1_0998PPUTGB1_0998PPUTGB1_0999PPUTGB1_0999
PPUT351746 PPUT_1036PPUT_1037PPUT_1039PPUT_1036PPUT_1036PPUT_1037PPUT_1037
PPUT160488 PP_0999PP_1000PP_1002PP_0999PP_0999PP_1000PP_1000
PPRO298386 PBPRA1990PBPRA1994PBPRA1577PBPRA0476PBPRA1990PBPRA0475PBPRA0475
PPEN278197 PEPE_1630PEPE_0189PEPE_1627PEPE_1630PEPE_1630PEPE_1631PEPE_1631
PMOB403833 PMOB_0069PMOB_1731PMOB_0069PMOB_0069PMOB_0068PMOB_0068
PMEN399739 PMEN_1106PMEN_1109PMEN_1106PMEN_1106PMEN_1107PMEN_1107
PHOR70601 PH1282PH0726PH1282PH1282PH0726PH0726
PFUR186497 PF0676PF0594PF0676PF0676PF0594PF0594
PFLU220664 PFL_4637PFL_4636PFL_4634PFL_4637PFL_4637PFL_4636PFL_4636
PFLU216595 PFLU4893PFLU4892PFLU4890PFLU4893PFLU4893PFLU4892PFLU4892
PFLU205922 PFL_4388PFL_4387PFL_4385PFL_4388PFL_4388PFL_4387PFL_4387
PENT384676 PSEEN4430PSEEN4429PSEEN4427PSEEN4430PSEEN4430PSEEN4429PSEEN4429
PAER208964 PA5173PA5172PA5170PA5173PA5173PA5172PA5172
PAER208963 PA14_68350PA14_68340PA14_68300PA14_68350PA14_68350PA14_68340PA14_68340
PAER178306 PAE1552PAE1985PAE1552PAE1552PAE1985PAE1985
PACN267747 PPA0585PPA0584PPA0582PPA0585PPA0585PPA0584PPA0584
PABY272844 PAB0593PAB1502PAB0593PAB0593PAB1502PAB1502
NSP35761 NOCA_1504NOCA_1632NOCA_2423NOCA_1504NOCA_2426NOCA_2425NOCA_2425
MVAN350058 MVAN_1389MVAN_1390MVAN_1392MVAN_1389MVAN_1389MVAN_1390MVAN_1390
MTHE264732 MOTH_2117MOTH_1996MOTH_2117MOTH_1948MOTH_2286MOTH_2286
MSP266779 MESO_3874MESO_0008MESO_2239MESO_2239MESO_2240MESO_2240
MPEN272633 MYPE6100MYPE6090MYPE6100MYPE6100MYPE6090MYPE6090
MMAR368407 MEMAR_0247MEMAR_0999MEMAR_0247MEMAR_0247MEMAR_0999MEMAR_0999
MCAP340047 MCAP_0651MCAP_0090MCAP_0651MCAP_0651MCAP_0090MCAP_0090
MART243272 MART0103MART0102MART0103MART0103MART0102MART0102
LSPH444177 BSPH_2904BSPH_4093BSPH_2904BSPH_2904BSPH_4093BSPH_4093
LSAK314315 LSA0372LSA0371LSA0374LSA0372LSA0071LSA0371LSA0371
LREU557436 LREU_0426LREU_0447LREU_0426LREU_0426LREU_0425LREU_0425
LMON265669 LMOF2365_0048LMOF2365_0045LMOF2365_0048LMOF2365_0048LMOF2365_1609LMOF2365_1609
LMON169963 LMO0039LMO0036LMO0039LMO0039LMO1587LMO1587
LLAC272623 L0112L0109L0111L92850L0112L0109L0109
LLAC272622 LACR_2319LACR_0860LACR_2320LACR_2318LACR_2318LACR_2321LACR_2321
LBRE387344 LVIS_2023LVIS_2210LVIS_1755LVIS_2023LVIS_2023LVIS_2026LVIS_2026
HMOD498761 HM1_2643HM1_2644HM1_2643HM1_2643HM1_1435HM1_1435
HCHE349521 HCH_05488HCH_05489HCH_05491HCH_05488HCH_05488HCH_05489HCH_05489
HBUT415426 HBUT_0269HBUT_0110HBUT_0269HBUT_0269HBUT_1203HBUT_1203
FNOD381764 FNOD_1788FNOD_0704FNOD_1788FNOD_1788FNOD_0704FNOD_0704
FMAG334413 FMG_1016FMG_0456FMG_1016FMG_1016FMG_0456FMG_0456
ESP42895 ENT638_3141ENT638_0450ENT638_1847ENT638_3141ENT638_0451ENT638_0459ENT638_0459
EFER585054 EFER_0421EFER_4334EFER_1432EFER_0421EFER_0561EFER_4334EFER_4334
EFAE226185 EF_2575EF_2577EF_2575EF_0386EF_0105EF_0105
ECOO157 YQEAZ4209Z2605YAHIARCCARGIARGI
ECOL83334 ECS3747ECS3743ECS2311ECS0372ECS0583ECS5231ECS5231
ECOL585397 ECED1_3334ECED1_3330ECED1_1804ECED1_0352ECED1_0540ECED1_5107ECED1_5107
ECOL585057 ECIAI39_3289ECIAI39_3285ECIAI39_1453ECIAI39_0364ECIAI39_0484ECIAI39_4727ECIAI39_4727
ECOL585056 ECUMN_3217ECUMN_3213ECUMN_1893ECUMN_0361ECUMN_0561ECUMN_4786ECUMN_4786
ECOL585055 EC55989_3161EC55989_3157EC55989_1770EC55989_0325EC55989_0535EC55989_4812EC55989_4812
ECOL585035 ECS88_3153ECS88_3149ECS88_1650ECS88_0331ECS88_0520ECS88_4841ECS88_4841
ECOL585034 ECIAI1_2994ECIAI1_2990ECIAI1_1655ECIAI1_0320ECIAI1_0523ECIAI1_4485ECIAI1_4485
ECOL481805 ECOLC_0834ECOLC_0838ECOLC_2025ECOLC_3300ECOLC_3101ECOLC_3758ECOLC_3758
ECOL469008 ECBD_0863ECBD_0867ECBD_2041ECBD_3334ECBD_3137ECBD_3782ECBD_3782
ECOL439855 ECSMS35_3007ECSMS35_3003ECSMS35_1594ECSMS35_0353ECSMS35_0566ECSMS35_4734ECSMS35_4734
ECOL413997 ECB_02707ECB_02703ECB_01574ECB_00278ECB_00471ECB_04120ECB_04120
ECOL409438 ECSE_3138ECSE_3134ECSE_1726ECSE_0343ECSE_0546ECSE_4560ECSE_4560
ECOL405955 APECO1_3652APECO1_3656APECO1_688APECO1_1668APECO1_1494APECO1_2140APECO1_2140
ECOL364106 UTI89_C3259UTI89_C3255UTI89_C1793UTI89_C0352UTI89_C0549UTI89_C4860UTI89_C4860
ECOL362663 ECP_2868ECP_2864ECP_1549ECP_0399ECP_0581ECP_4498ECP_4498
ECOL331111 ECE24377A_3199ECE24377A_3195ECE24377A_1813ECE24377A_0341ECE24377A_0559ECE24377A_4825ECE24377A_4825
ECOL316407 ECK2870:JW2842:B2874ECK2866:JW5463:B2870ECK1600:JW1597:B1605ECK0321:JW0315:B0323ECK0514:JW0510:B0521ECK0274:JW0266:B0273ECK0274:JW0266:B0273
ECOL199310 C3452C3448C1997C0444C0635C5353C5353
DSHI398580 DSHI_0434DSHI_0433DSHI_0434DSHI_0434DSHI_0433DSHI_0433
DNOD246195 DNO_1073DNO_1074DNO_1073DNO_1073DNO_1074DNO_1074
CVIO243365 CV_3780CV_3781CV_3783CV_3780CV_3780CV_3781CV_3781
CSP78 CAUL_2963CAUL_3940CAUL_2963CAUL_2963CAUL_2960CAUL_2960
CPHY357809 CPHY_3101CPHY_0421CPHY_3101CPHY_3101CPHY_0421CPHY_0421
CPER289380 CPR_0160CPR_0158CPR_0159CPR_0160CPR_0160CPR_0158CPR_0158
CPER195103 CPF_0164CPF_1387CPF_0163CPF_0164CPF_0164CPF_0162CPF_0162
CPER195102 CPE0171CPE0169CPE0170CPE0171CPE0171CPE0169CPE0169
CKOR374847 KCR_1250KCR_1251KCR_1250KCR_1250KCR_0501KCR_1331
CBOT536232 CLM_2901CLM_3281CLM_1829CLM_2901CLM_2901CLM_2900CLM_2900
CBOT515621 CLJ_B2824CLJ_B3139CLJ_B1695CLJ_B2824CLJ_B2824CLJ_B2823CLJ_B2823
CBOT508765 CLL_A0624CLL_A0623CLL_A2315CLL_A0624CLL_A0624CLL_A3120
CBOT498213 CLD_1971CLD_1657CLD_2964CLD_1971CLD_1971CLD_1972CLD_1972
CBOT441772 CLI_2657CLI_2941CLI_1669CLI_2657CLI_2657CLI_2656CLI_2656
CBOT441771 CLC_2466CLC_2782CLC_1618CLC_2466CLC_2466CLC_2465CLC_2465
CBOT441770 CLB_2535CLB_2849CLB_1608CLB_2535CLB_2535CLB_2534CLB_2534
CBOT36826 CBO2594CBO2885CBO1588CBO2594CBO2594CBO2593CBO2593
CBEI290402 CBEI_1969CBEI_1968CBEI_1969CBEI_1969CBEI_2446CBEI_2446
BXEN266265 BXE_C0748BXE_C0747BXE_C0744BXE_C0748BXE_C0748BXE_C0747BXE_C0747
BTUR314724 BT0843ABT0842BT0843ABT0843ABT0842BT0842
BTHU412694 BALH_0366BALH_0363BALH_0365BALH_0366BALH_0366BALH_0363BALH_0363
BTHU281309 BT9727_0344BT9727_0342BT9727_0343BT9727_0344BT9727_0344BT9727_0342BT9727_0342
BTHA271848 BTH_I2386BTH_I2385BTH_I2383BTH_I2386BTH_I2386BTH_I2385BTH_I2385
BPSE320373 BURPS668_1966BURPS668_1967BURPS668_1969BURPS668_1966BURPS668_1966BURPS668_1967BURPS668_1967
BPSE320372 BURPS1710B_A2293BURPS1710B_A2295BURPS1710B_A2297BURPS1710B_A2293BURPS1710B_A2293BURPS1710B_A2295BURPS1710B_A2295
BPSE272560 BPSL1745BPSL1744BPSL1742BPSL1745BPSL1745BPSL1744BPSL1744
BMAL320389 BMA10247_0913BMA10247_0914BMA10247_0916BMA10247_0913BMA10247_0913BMA10247_0914BMA10247_0914
BMAL320388 BMASAVP1_A1587BMASAVP1_A1586BMASAVP1_A1584BMASAVP1_A1587BMASAVP1_A1587BMASAVP1_A1586BMASAVP1_A1586
BMAL243160 BMA_1147BMA_1146BMA_1144BMA_1147BMA_1147BMA_1146BMA_1146
BLIC279010 BL01916BL01914BL01915BL01102BL01916BL01914BL01914
BHER314723 BH0843ABH0842BH0843ABH0843ABH0842BH0842
BCER405917 BCE_0475BCE_0473BCE_0474BCE_0475BCE_0475BCE_0473BCE_0473
BCER315749 BCER98_0351BCER98_0349BCER98_0350BCER98_0351BCER98_0351BCER98_0349BCER98_0349
BCER226900 BC_0409BC_0407BC_0408BC_0409BC_0409BC_0407BC_0407
BAMB398577 BAMMC406_4539BAMMC406_4538BAMMC406_4536BAMMC406_4539BAMMC406_4539BAMMC406_4538BAMMC406_4538
ASAL382245 ASA_0223ASA_0224ASA_1526ASA_0223ASA_0223ASA_0224ASA_0224
APLE434271 APJL_1332APJL_1098APJL_1332APJL_1332APJL_1331APJL_1331
APLE416269 APL_1318APL_1082APL_1318APL_1318APL_1317APL_1317
ANAE240017 ANA_0795ANA_0794ANA_0795ANA_0795ANA_0794ANA_0794
AMET293826 AMET_4607AMET_4608AMET_4607AMET_4607AMET_4608AMET_4608
AHYD196024 AHA_2165AHA_2161AHA_2806AHA_2165AHA_4092AHA_4091AHA_4091
ABAC204669 ACID345_1820ACID345_4159ACID345_1820ACID345_1820ACID345_1819ACID345_1819


Organism features enriched in list (features available for 159 out of the 172 orgs in the list)
Feature    Pvalue       Num occurrences in list  Total num occurrences  
Arrangment:Chains 7.217e-74592
Arrangment:Clusters 1.578e-71517
Arrangment:Pairs 2.382e-1160112
Disease:Botulism 0.001440655
Disease:Dysentery 0.006340556
Disease:None 0.0055322858
Disease:Toxic-shock_syndrome_and_staphylococcal_scarlet_fever 4.793e-71111
Disease:Urinary_tract_infection 0.005381244
Disease:Wide_range_of_infections 4.793e-71111
Disease:endocarditis 0.005381244
Disease:pneumonia 0.0039160812
Endospores:No 0.000147876211
GC_Content_Range4:0-40 0.000738174213
GC_Content_Range4:60-100 0.003672128145
GC_Content_Range7:30-40 0.001644859166
GC_Content_Range7:40-50 0.000150917117
GC_Content_Range7:50-60 0.003630940107
Genome_Size_Range5:0-2 0.004803831155
Genome_Size_Range9:2-3 0.009789242120
Genome_Size_Range9:3-4 0.0002743977
Genome_Size_Range9:6-8 0.00321071838
Gram_Stain:Gram_Neg 0.000528974333
Gram_Stain:Gram_Pos 4.002e-867150
Habitat:Aquatic 0.00010271191
Habitat:Multiple 0.008870059178
Motility:No 0.009897951151
Motility:Yes 0.008497884267
Optimal_temp.:- 0.005727458257
Optimal_temp.:30-35 0.001974367
Optimal_temp.:30-37 4.517e-81618
Optimal_temp.:37 0.005395439106
Oxygen_Req:Aerobic 1.880e-628185
Oxygen_Req:Facultative 6.022e-1392201
Pathogenic_in:Human 2.209e-989213
Pathogenic_in:No 7.828e-737226
Salinity:Non-halophilic 0.009129938106
Shape:Coccus 3.701e-104782
Shape:Spiral 0.0053280334



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ORGANISMS CONTAINING AT MOST 1 GENES FROM THE GROUP:

Total number of orgs: 266
Effective number of orgs (counting one per cluster within 468 clusters): 215

Organism list
Homologs in each organism in the list
Features enriched in organism list


Follow (ncbi) link, when present, to find the set of organism features for each organism
Org ID  Org Name  # genes in group found in org  
ZMOB264203 ncbi Zymomonas mobilis mobilis ZM41
XORY360094 ncbi Xanthomonas oryzae pv. oryzae PXO99A1
XORY342109 ncbi Xanthomonas oryzae pv. oryzae MAFF 3110181
XORY291331 ncbi Xanthomonas oryzae pv. oryzae KACC103311
XFAS405440 ncbi Xylella fastidiosa M121
XFAS183190 ncbi Xylella fastidiosa Temecula11
XFAS160492 ncbi Xylella fastidiosa 9a5c1
XCAM487884 Xanthomonas campestris pv. paulliniae1
XCAM316273 ncbi Xanthomonas campestris pv. vesicatoria str. 85-101
XCAM314565 ncbi Xanthomonas campestris pv. campestris str. 80041
XCAM190485 ncbi Xanthomonas campestris pv. campestris str. ATCC 339131
XAXO190486 ncbi Xanthomonas axonopodis pv. citri str. 3061
XAUT78245 ncbi Xanthobacter autotrophicus Py20
WPIP955 Wolbachia pipientis1
WPIP80849 Wolbachia endosymbiont of Brugia malayi1
VEIS391735 ncbi Verminephrobacter eiseniae EF01-20
UURE95667 Ureaplasma urealyticum serovar 130
UURE95664 Ureaplasma urealyticum serovar 100
UPAR505682 ncbi Ureaplasma parvum serovar 3 str. ATCC 278150
TWHI218496 ncbi Tropheryma whipplei TW08/270
TWHI203267 ncbi Tropheryma whipplei Twist0
TTUR377629 ncbi Teredinibacter turnerae T79010
TTHE300852 ncbi Thermus thermophilus HB81
TTHE262724 ncbi Thermus thermophilus HB271
TPAL243276 ncbi Treponema pallidum pallidum Nichols0
TDEN292415 ncbi Thiobacillus denitrificans ATCC 252590
STRO369723 ncbi Salinispora tropica CNB-4401
STOK273063 ncbi Sulfolobus tokodaii 70
SSP84588 ncbi Synechococcus sp. WH 81021
SSP64471 ncbi Synechococcus sp. CC93111
SSP1131 Synechococcus sp. CC96050
SSOL273057 ncbi Sulfolobus solfataricus P20
SSED425104 ncbi Shewanella sediminis HAW-EB30
SRUB309807 ncbi Salinibacter ruber DSM 138551
SPEA398579 ncbi Shewanella pealeana ATCC 7003451
SLOI323850 ncbi Shewanella loihica PV-40
SELO269084 ncbi Synechococcus elongatus PCC 63011
SDEN318161 ncbi Shewanella denitrificans OS2170
SDEG203122 ncbi Saccharophagus degradans 2-401
SBAL402882 ncbi Shewanella baltica OS1851
SBAL399599 ncbi Shewanella baltica OS1951
SACI330779 ncbi Sulfolobus acidocaldarius DSM 6391
RTYP257363 ncbi Rickettsia typhi Wilmington1
RSPH349102 ncbi Rhodobacter sphaeroides ATCC 170251
RSOL267608 ncbi Ralstonia solanacearum GMI10000
RRIC452659 ncbi Rickettsia rickettsii Iowa1
RRIC392021 ncbi Rickettsia rickettsii Sheila Smith1
RPRO272947 ncbi Rickettsia prowazekii Madrid E1
RPAL316058 ncbi Rhodopseudomonas palustris HaA20
RPAL316057 ncbi Rhodopseudomonas palustris BisB51
RPAL316056 ncbi Rhodopseudomonas palustris BisB181
RPAL316055 ncbi Rhodopseudomonas palustris BisA531
RPAL258594 ncbi Rhodopseudomonas palustris CGA0091
RMET266264 ncbi Ralstonia metallidurans CH341
RMAS416276 ncbi Rickettsia massiliae MTU51
RLEG216596 ncbi Rhizobium leguminosarum bv. viciae 38410
RFER338969 ncbi Rhodoferax ferrireducens T1180
RFEL315456 ncbi Rickettsia felis URRWXCal21
REUT381666 ncbi Ralstonia eutropha H161
REUT264198 ncbi Ralstonia eutropha JMP1341
RETL347834 ncbi Rhizobium etli CFN 421
RCON272944 ncbi Rickettsia conorii Malish 71
RCAN293613 ncbi Rickettsia canadensis McKiel1
RBEL391896 ncbi Rickettsia bellii OSU 85-3890
RBEL336407 ncbi Rickettsia bellii RML369-C1
RALB246199 Ruminococcus albus 80
RAKA293614 ncbi Rickettsia akari Hartford1
PSYR223283 ncbi Pseudomonas syringae pv. tomato str. DC30000
PSP312153 ncbi Polynucleobacter necessarius asymbioticus QLW-P1DMWA-11
PSP296591 ncbi Polaromonas sp. JS6660
PSP117 Pirellula sp.0
PRUM264731 ncbi Prevotella ruminicola 231
PNAP365044 ncbi Polaromonas naphthalenivorans CJ20
PMAR74547 ncbi Prochlorococcus marinus MIT 93131
PMAR74546 ncbi Prochlorococcus marinus MIT 93121
PMAR59920 ncbi Prochlorococcus marinus NATL2A1
PMAR167546 ncbi Prochlorococcus marinus MIT 93011
PMAR167542 ncbi Prochlorococcus marinus MIT 95151
PMAR167540 Prochlorococcus marinus pastoris MED4ax1
PMAR146891 ncbi Prochlorococcus marinus AS96011
PLUT319225 ncbi Chlorobium luteolum DSM 2730
PINT246198 Prevotella intermedia 170
PING357804 ncbi Psychromonas ingrahamii 370
PHAL326442 ncbi Pseudoalteromonas haloplanktis TAC1250
PGIN242619 ncbi Porphyromonas gingivalis W830
PDIS435591 ncbi Parabacteroides distasonis ATCC 85031
PCRY335284 ncbi Psychrobacter cryohalolentis K51
PATL342610 ncbi Pseudoalteromonas atlantica T6c0
PAST100379 Onion yellows phytoplasma0
OTSU357244 ncbi Orientia tsutsugamushi Boryong0
OCAR504832 ncbi Oligotropha carboxidovorans OM51
NWIN323098 ncbi Nitrobacter winogradskyi Nb-2551
NSEN222891 ncbi Neorickettsia sennetsu Miyayama0
NPHA348780 ncbi Natronomonas pharaonis DSM 21601
NOCE323261 ncbi Nitrosococcus oceani ATCC 197070
NMUL323848 ncbi Nitrosospira multiformis ATCC 251960
NHAM323097 ncbi Nitrobacter hamburgensis X141
NEUT335283 ncbi Nitrosomonas eutropha C910
NEUR228410 ncbi Nitrosomonas europaea ATCC 197180
MXAN246197 ncbi Myxococcus xanthus DK 16221
MTHE349307 ncbi Methanosaeta thermophila PT1
MSYN262723 ncbi Mycoplasma synoviae 530
MSP409 Methylobacterium sp.0
MSP189918 ncbi Mycobacterium sp. KMS1
MSP164757 ncbi Mycobacterium sp. JLS0
MSP164756 ncbi Mycobacterium sp. MCS1
MSED399549 ncbi Metallosphaera sedula DSM 53480
MPUL272635 ncbi Mycoplasma pulmonis UAB CTIP0
MPET420662 ncbi Methylibium petroleiphilum PM10
MMOB267748 ncbi Mycoplasma mobile 163K0
MMAZ192952 ncbi Methanosarcina mazei Go11
MMAR444158 ncbi Methanococcus maripaludis C60
MMAR426368 ncbi Methanococcus maripaludis C70
MMAR402880 ncbi Methanococcus maripaludis C50
MMAR267377 ncbi Methanococcus maripaludis S20
MMAG342108 ncbi Magnetospirillum magneticum AMB-11
MLOT266835 ncbi Mesorhizobium loti MAFF3030991
MLEP272631 ncbi Mycobacterium leprae TN1
MKAN190192 ncbi Methanopyrus kandleri AV190
MHYO295358 ncbi Mycoplasma hyopneumoniae 2320
MHYO262722 ncbi Mycoplasma hyopneumoniae 74480
MHYO262719 ncbi Mycoplasma hyopneumoniae J0
MHUN323259 ncbi Methanospirillum hungatei JF-11
MGEN243273 ncbi Mycoplasma genitalium G370
MFLO265311 ncbi Mesoplasma florum L10
MFLA265072 ncbi Methylobacillus flagellatus KT1
MEXT419610 ncbi Methylobacterium extorquens PA10
MAQU351348 ncbi Marinobacter aquaeolei VT80
MAEO419665 ncbi Methanococcus aeolicus Nankai-31
LPNE400673 ncbi Legionella pneumophila Corby0
LPNE297246 ncbi Legionella pneumophila Paris0
LPNE297245 ncbi Legionella pneumophila Lens0
LPNE272624 ncbi Legionella pneumophila pneumophila Philadelphia 10
LJOH257314 ncbi Lactobacillus johnsonii NCC 5331
LINT363253 ncbi Lawsonia intracellularis PHE/MN1-000
LINT267671 ncbi Leptospira interrogans serovar Copenhageni str. Fiocruz L1-1300
LINT189518 ncbi Leptospira interrogans serovar Lai str. 566010
LHEL405566 ncbi Lactobacillus helveticus DPC 45710
LGAS324831 ncbi Lactobacillus gasseri ATCC 333230
LDEL390333 ncbi Lactobacillus delbrueckii bulgaricus ATCC 118420
LDEL321956 ncbi Lactobacillus delbrueckii bulgaricus ATCC BAA-3651
LCHO395495 ncbi Leptothrix cholodnii SP-60
LCAS321967 ncbi Lactobacillus casei ATCC 3340
LBOR355277 ncbi Leptospira borgpetersenii serovar Hardjo-bovis JB1970
LBOR355276 ncbi Leptospira borgpetersenii serovar Hardjo-bovis L5500
LBIF456481 ncbi Leptospira biflexa serovar Patoc strain Patoc 1 (Paris)0
LBIF355278 ncbi Leptospira biflexa serovar Patoc strain Patoc 1 (Ames)0
LACI272621 ncbi Lactobacillus acidophilus NCFM0
KRAD266940 ncbi Kineococcus radiotolerans SRS302160
JSP290400 ncbi Jannaschia sp. CCS11
ILOI283942 ncbi Idiomarina loihiensis L2TR0
HWAL362976 ncbi Haloquadratum walsbyi DSM 167901
HSOM228400 ncbi Haemophilus somnus 23360
HSOM205914 ncbi Haemophilus somnus 129PT1
HPYL85963 ncbi Helicobacter pylori J991
HPYL357544 ncbi Helicobacter pylori HPAG11
HPY ncbi Helicobacter pylori 266951
HNEP81032 Hyphomonas neptunium1
HMUK485914 ncbi Halomicrobium mukohataei DSM 122861
HMAR272569 ncbi Haloarcula marismortui ATCC 430491
HHEP235279 ncbi Helicobacter hepaticus ATCC 514491
HHAL349124 ncbi Halorhodospira halophila SL10
HARS204773 ncbi Herminiimonas arsenicoxydans0
HACI382638 ncbi Helicobacter acinonychis Sheeba1
GFOR411154 ncbi Gramella forsetii KT08031
FTUL458234 ncbi Francisella tularensis holarctica FTNF002-000
FTUL418136 ncbi Francisella tularensis tularensis WY96-34180
FTUL401614 ncbi Francisella novicida U1120
FTUL393115 ncbi Francisella tularensis tularensis FSC1980
FTUL393011 ncbi Francisella tularensis holarctica OSU180
FTUL351581 Francisella tularensis holarctica FSC2000
FSUC59374 ncbi Fibrobacter succinogenes succinogenes S851
FSP106370 ncbi Frankia sp. CcI31
FRANT ncbi Francisella tularensis tularensis SCHU S40
FPHI484022 ncbi Francisella philomiragia philomiragia ATCC 250170
FNUC190304 ncbi Fusobacterium nucleatum nucleatum ATCC 255860
FJOH376686 ncbi Flavobacterium johnsoniae UW1011
FALN326424 ncbi Frankia alni ACN14a0
ERUM302409 ncbi Ehrlichia ruminantium Gardel0
ERUM254945 ncbi Ehrlichia ruminantium Welgevonden0
ELIT314225 ncbi Erythrobacter litoralis HTCC25940
ECHA205920 ncbi Ehrlichia chaffeensis Arkansas0
ECAN269484 ncbi Ehrlichia canis Jake0
DSP255470 ncbi Dehalococcoides sp. CBDB11
DSP216389 ncbi Dehalococcoides sp. BAV11
DRAD243230 ncbi Deinococcus radiodurans R10
DETH243164 ncbi Dehalococcoides ethenogenes 1951
DARO159087 ncbi Dechloromonas aromatica RCB0
CVES412965 ncbi Candidatus Vesicomyosocius okutanii HA0
CTRA471473 ncbi Chlamydia trachomatis L2b/UCH-1/proctitis1
CTRA471472 ncbi Chlamydia trachomatis 434/Bu1
CTEP194439 ncbi Chlorobium tepidum TLS0
CSUL444179 ncbi Candidatus Sulcia muelleri GWSS1
CSP501479 Citreicella sp. SE451
CSAL290398 ncbi Chromohalobacter salexigens DSM 30431
CRUT413404 ncbi Candidatus Ruthia magnifica Cm (Calyptogena magnifica)0
CPSY167879 ncbi Colwellia psychrerythraea 34H0
CPRO264201 ncbi Candidatus Protochlamydia amoebophila UWE250
CPNE182082 ncbi Chlamydophila pneumoniae TW-1831
CPNE138677 ncbi Chlamydophila pneumoniae J1381
CPNE115713 ncbi Chlamydophila pneumoniae CWL0291
CPNE115711 ncbi Chlamydophila pneumoniae AR391
CPEL335992 ncbi Candidatus Pelagibacter ubique HTCC10620
CMUR243161 ncbi Chlamydia muridarum Nigg1
CJEJ407148 ncbi Campylobacter jejuni jejuni 811161
CJEJ360109 ncbi Campylobacter jejuni doylei 269.970
CJEJ354242 ncbi Campylobacter jejuni jejuni 81-1761
CJEJ195099 ncbi Campylobacter jejuni RM12211
CJEJ192222 ncbi Campylobacter jejuni jejuni NCTC 111681
CJEI306537 ncbi Corynebacterium jeikeium K4111
CJAP155077 Cellvibrio japonicus0
CHUT269798 ncbi Cytophaga hutchinsonii ATCC 334061
CGLU196627 ncbi Corynebacterium glutamicum ATCC 130321
CFET360106 ncbi Campylobacter fetus fetus 82-400
CFEL264202 ncbi Chlamydophila felis Fe/C-561
CEFF196164 ncbi Corynebacterium efficiens YS-3141
CDIP257309 ncbi Corynebacterium diphtheriae NCTC 131291
CCUR360105 ncbi Campylobacter curvus 525.921
CCHL340177 ncbi Chlorobium chlorochromatii CaD30
CCAV227941 ncbi Chlamydophila caviae GPIC1
CBUR434922 ncbi Coxiella burnetii Dugway 5J108-1110
CBUR360115 ncbi Coxiella burnetii RSA 3310
CBUR227377 ncbi Coxiella burnetii RSA 4930
CAULO ncbi Caulobacter crescentus CB151
CABO218497 ncbi Chlamydophila abortus S26/31
BVIE269482 ncbi Burkholderia vietnamiensis G41
BTRI382640 ncbi Bartonella tribocorum CIP 1054760
BTHE226186 ncbi Bacteroides thetaiotaomicron VPI-54821
BSUI470137 ncbi Brucella suis ATCC 234451
BSUI204722 ncbi Brucella suis 13301
BSP376 Bradyrhizobium sp.1
BSP36773 Burkholderia sp.1
BQUI283165 ncbi Bartonella quintana Toulouse0
BPET94624 Bordetella petrii1
BPER257313 ncbi Bordetella pertussis Tohama I0
BPAR257311 ncbi Bordetella parapertussis 128220
BOVI236 Brucella ovis1
BMEL359391 ncbi Brucella melitensis biovar Abortus 23081
BMEL224914 ncbi Brucella melitensis bv. 1 str. 16M1
BHEN283166 ncbi Bartonella henselae Houston-10
BFRA295405 ncbi Bacteroides fragilis YCH461
BFRA272559 ncbi Bacteroides fragilis NCTC 93431
BCIC186490 Candidatus Baumannia cicadellinicola0
BCER572264 ncbi Bacillus cereus 03BB1021
BCEN331272 ncbi Burkholderia cenocepacia HI24240
BCEN331271 ncbi Burkholderia cenocepacia AU 10540
BCAN483179 ncbi Brucella canis ATCC 233651
BBRO257310 ncbi Bordetella bronchiseptica RB500
BBAC360095 ncbi Bartonella bacilliformis KC5831
BBAC264462 ncbi Bdellovibrio bacteriovorus HD1000
BAMB339670 ncbi Burkholderia ambifaria AMMD1
BABO262698 ncbi Brucella abortus bv. 1 str. 9-9411
AYEL322098 ncbi Aster yellows witches-broom phytoplasma AYWB0
AURANTIMONAS Aurantimonas manganoxydans SI85-9A10
ASP76114 ncbi Aromatoleum aromaticum EbN11
ASP62928 ncbi Azoarcus sp. BH720
ASP232721 ncbi Acidovorax sp. JS421
APHA212042 ncbi Anaplasma phagocytophilum HZ0
AMAR234826 ncbi Anaplasma marginale St. Maries0
ALAI441768 ncbi Acholeplasma laidlawii PG-8A0
ADEH290397 ncbi Anaeromyxobacter dehalogenans 2CP-C1
ACRY349163 ncbi Acidiphilium cryptum JF-50
ABOR393595 ncbi Alcanivorax borkumensis SK21
ABAU360910 ncbi Bordetella avium 197N1
AAVE397945 ncbi Acidovorax citrulli AAC00-10
AAEO224324 ncbi Aquifex aeolicus VF51


Names of the homologs of the genes in the group in each of these orgs
  G7493   G7489   G6861   G6188   EG12384   EG10069   EG10067   
ZMOB264203 ZMO0409
XORY360094 XOOORF_2038
XORY342109 XOO2522
XORY291331 XOO2676
XFAS405440 XFASM12_0314
XFAS183190 PD_0290
XFAS160492 XF0998
XCAM487884 XCC-B100_1930
XCAM316273 XCAORF_2518
XCAM314565 XC_1869
XCAM190485 XCC2249
XAXO190486 XAC2352
XAUT78245
WPIP955 WD_0957
WPIP80849 WB_0066
VEIS391735
UURE95667
UURE95664
UPAR505682
TWHI218496
TWHI203267
TTUR377629
TTHE300852 TTHA1199
TTHE262724 TT_C0838
TPAL243276
TDEN292415
STRO369723 STROP_1892
STOK273063
SSP84588 SYNW1586OR3112
SSP64471 GSYN0877
SSP1131
SSOL273057
SSED425104
SRUB309807 SRU_2218
SPEA398579 SPEA_2206
SLOI323850
SELO269084 SYC1592_C
SDEN318161
SDEG203122 SDE_2441
SBAL402882 SHEW185_3099
SBAL399599 SBAL195_3242
SACI330779 SACI_1408
RTYP257363 RT0470
RSPH349102 RSPH17025_3106
RSOL267608
RRIC452659 RRIOWA_0864
RRIC392021 A1G_04110
RPRO272947 RP483
RPAL316058
RPAL316057 RPD_0896
RPAL316056 RPC_4915
RPAL316055 RPE_4883
RPAL258594 RPA4772
RMET266264 RMET_2902
RMAS416276 RMA_0820
RLEG216596
RFER338969
RFEL315456 RF_0841
REUT381666 H16_A3063
REUT264198 REUT_A2763
RETL347834 RHE_CH00517
RCON272944 RC0726
RCAN293613 A1E_02350
RBEL391896
RBEL336407 RBE_0663
RALB246199
RAKA293614 A1C_03920
PSYR223283
PSP312153 PNUC_1754
PSP296591
PSP117
PRUM264731 GFRORF2210
PNAP365044
PMAR74547 PMT0379
PMAR74546 PMT9312_1357
PMAR59920 PMN2A_0829
PMAR167546 P9301ORF_1472
PMAR167542 P9515ORF_1487
PMAR167540 PMM1263
PMAR146891 A9601_14621
PLUT319225
PINT246198
PING357804
PHAL326442
PGIN242619
PDIS435591 BDI_2259
PCRY335284 PCRYO_1461
PATL342610
PAST100379
OTSU357244
OCAR504832 OCAR_4655
NWIN323098 NWI_0514
NSEN222891
NPHA348780 NP5268A
NOCE323261
NMUL323848
NHAM323097 NHAM_0643
NEUT335283
NEUR228410
MXAN246197 MXAN_5104
MTHE349307 MTHE_0975
MSYN262723
MSP409
MSP189918 MKMS_3012
MSP164757
MSP164756 MMCS_2968
MSED399549
MPUL272635
MPET420662
MMOB267748
MMAZ192952 MM0145
MMAR444158
MMAR426368
MMAR402880
MMAR267377
MMAG342108 AMB0317
MLOT266835 MLR6736
MLEP272631 ML1410
MKAN190192
MHYO295358
MHYO262722
MHYO262719
MHUN323259 MHUN_1113
MGEN243273
MFLO265311
MFLA265072 MFLA_1709
MEXT419610
MAQU351348
MAEO419665 MAEO_0354
LPNE400673
LPNE297246
LPNE297245
LPNE272624
LJOH257314 LJ_0731
LINT363253
LINT267671
LINT189518
LHEL405566
LGAS324831
LDEL390333
LDEL321956 LBUL_1737
LCHO395495
LCAS321967
LBOR355277
LBOR355276
LBIF456481
LBIF355278
LACI272621
KRAD266940
JSP290400 JANN_1023
ILOI283942
HWAL362976 HQ3719A
HSOM228400
HSOM205914 HS_1006
HPYL85963 JHP0341
HPYL357544 HPAG1_0363
HPY HP1084
HNEP81032 HNE_0592
HMUK485914 HMUK_0777
HMAR272569 RRNAC2672
HHEP235279 HH_0977
HHAL349124
HARS204773
HACI382638 HAC_0799
GFOR411154 GFO_2103
FTUL458234
FTUL418136
FTUL401614
FTUL393115
FTUL393011
FTUL351581
FSUC59374 FSU1051
FSP106370 FRANCCI3_3171
FRANT
FPHI484022
FNUC190304
FJOH376686 FJOH_3430
FALN326424
ERUM302409
ERUM254945
ELIT314225
ECHA205920
ECAN269484
DSP255470 CBDBA1353
DSP216389 DEHABAV1_1203
DRAD243230
DETH243164 DET_1394
DARO159087
CVES412965
CTRA471473 CTLON_0626
CTRA471472 CTL0628
CTEP194439
CSUL444179 SMGWSS_114
CSP501479 CSE45_0600
CSAL290398 CSAL_2130
CRUT413404
CPSY167879
CPRO264201
CPNE182082 CPB1071
CPNE138677 CPJ1031
CPNE115713 CPN1031
CPNE115711 CP_0821
CPEL335992
CMUR243161 TC_0653
CJEJ407148 C8J_0931
CJEJ360109
CJEJ354242 CJJ81176_1012
CJEJ195099 CJE_1074
CJEJ192222 CJ0994C
CJEI306537 JK0185
CJAP155077
CHUT269798 CHU_3085
CGLU196627 CG1105
CFET360106
CFEL264202 CF0285
CEFF196164 CE1035
CDIP257309 DIP0914
CCUR360105 CCV52592_0157
CCHL340177
CCAV227941 CCA_00731
CBUR434922
CBUR360115
CBUR227377
CAULO CC3126
CABO218497 CAB698
BVIE269482 BCEP1808_5439
BTRI382640
BTHE226186 BT_3717
BSUI470137 BSUIS_A0328
BSUI204722 BR_0302
BSP376 BRADO6778
BSP36773 BCEP18194_B0780
BQUI283165
BPET94624 BPET2426
BPER257313
BPAR257311
BOVI236 GBOORF0325
BMEL359391 BAB1_0332
BMEL224914 BMEI1620
BHEN283166
BFRA295405 BF0494
BFRA272559 BF0439
BCIC186490
BCER572264 BCA_2363
BCEN331272
BCEN331271
BCAN483179 BCAN_A0308
BBRO257310
BBAC360095 BARBAKC583_1291
BBAC264462
BAMB339670 BAMB_4344
BABO262698 BRUAB1_0328
AYEL322098
AURANTIMONAS
ASP76114 EBA5096
ASP62928
ASP232721 AJS_3003
APHA212042
AMAR234826
ALAI441768
ADEH290397 ADEH_2691
ACRY349163
ABOR393595 ABO_0718
ABAU360910 BAV2688
AAVE397945
AAEO224324 AQ_1711


Organism features enriched in list (features available for 244 out of the 266 orgs in the list)
Feature    Pvalue       Num occurrences in list  Total num occurrences  
Arrangment:Chains 0.00065042592
Arrangment:Clusters 0.0064412217
Arrangment:Pairs 3.772e-1216112
Disease:Gastroenteritis 0.0076390113
Disease:Pharyngitis 0.000879888
Disease:bronchitis_and_pneumonitis 0.000879888
Endospores:No 0.000703271211
Endospores:Yes 7.578e-9453
GC_Content_Range7:50-60 0.003196033107
Genome_Size_Range5:0-2 9.618e-790155
Genome_Size_Range5:4-6 0.000618360184
Genome_Size_Range9:1-2 0.000038173128
Genome_Size_Range9:2-3 0.005398039120
Genome_Size_Range9:4-5 0.00190422896
Gram_Stain:Gram_Neg 3.139e-8171333
Gram_Stain:Gram_Pos 1.777e-1326150
Habitat:Host-associated 0.0024478101206
Habitat:Multiple 0.008073663178
Motility:No 0.003062750151
Optimal_temp.:- 0.0008824125257
Optimal_temp.:30-37 0.0006487118
Oxygen_Req:Aerobic 8.124e-7104185
Oxygen_Req:Anaerobic 0.000400928102
Oxygen_Req:Facultative 5.849e-757201
Pathogenic_in:Human 0.000780272213
Shape:Coccus 2.154e-71482
Shape:Spiral 0.00799572134
Temp._range:Hyperthermophilic 0.0082643423
Temp._range:Thermophilic 0.0010048635



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ORGANISMS ENRICHED FOR GROUP:

Total number of orgs: 28
Effective number of orgs (counting one per cluster within 468 clusters): 26

Organism list
Homologs in each organism in the list
Features enriched in organism list


Follow (ncbi) link, when present, to find the set of organism features for each organism
Org ID  Org Name    Pvalue       # genes in tgt genome found in org  # genes in group found in org  
MART243272 ncbi Mycoplasma arthritidis 158L3-1 4.888e-8786
MPEN272633 ncbi Mycoplasma penetrans HF-2 3.687e-61586
MCAP340047 ncbi Mycoplasma capricolum capricolum ATCC 27343 5.749e-61706
MPNE272634 ncbi Mycoplasma pneumoniae M129 0.0000231945
BHER314723 ncbi Borrelia hermsii DAH 0.00004622406
BTUR314724 ncbi Borrelia turicatae 91E135 0.00005232456
SMAR399550 ncbi Staphylothermus marinus F1 0.00010032736
HBUT415426 ncbi Hyperthermus butylicus DSM 5456 0.00011672806
TACI273075 ncbi Thermoplasma acidophilum DSM 1728 0.00031863316
PAER178306 ncbi Pyrobaculum aerophilum IM2 0.00043743496
CKOR374847 ncbi Candidatus Korarchaeum cryptofilum OPF8 0.00047633546
PHOR70601 ncbi Pyrococcus horikoshii OT3 0.00082413886
PPEN278197 ncbi Pediococcus pentosaceus ATCC 25745 0.00151007847
LBRE387344 ncbi Lactobacillus brevis ATCC 367 0.00186648087
PABY272844 ncbi Pyrococcus abyssi GE5 0.00215904566
PFUR186497 ncbi Pyrococcus furiosus DSM 3638 0.00230384616
TKOD69014 ncbi Thermococcus kodakarensis KOD1 0.00248814676
LSAK314315 ncbi Lactobacillus sakei sakei 23K 0.00253528447
MMAR368407 ncbi Methanoculleus marisnigri JR1 0.00296624816
SAGA211110 ncbi Streptococcus agalactiae NEM316 0.00303758667
PACN267747 ncbi Propionibacterium acnes KPA171202 0.00306228677
SAGA208435 ncbi Streptococcus agalactiae 2603V/R 0.00311218697
SAGA205921 ncbi Streptococcus agalactiae A909 0.00313748707
LLAC272622 ncbi Lactococcus lactis cremoris SK11 0.00359428877
LLAC272623 ncbi Lactococcus lactis lactis Il1403 0.00423629087
APER272557 ncbi Aeropyrum pernix K1 0.00747502985
TVOL273116 ncbi Thermoplasma volcanium GSS1 0.00838333055
SEPI176280 ncbi Staphylococcus epidermidis ATCC 12228 0.009990010267


Names of the homologs of the genes in the group in each of these orgs
  G7493   G7489   G6861   G6188   EG12384   EG10069   EG10067   
MART243272 MART0103MART0102MART0103MART0103MART0102MART0102
MPEN272633 MYPE6100MYPE6090MYPE6100MYPE6100MYPE6090MYPE6090
MCAP340047 MCAP_0651MCAP_0090MCAP_0651MCAP_0651MCAP_0090MCAP_0090
MPNE272634 MPN307MPN307MPN307MPN306MPN306
BHER314723 BH0843ABH0842BH0843ABH0843ABH0842BH0842
BTUR314724 BT0843ABT0842BT0843ABT0843ABT0842BT0842
SMAR399550 SMAR_0235SMAR_0278SMAR_0235SMAR_0235SMAR_0224SMAR_0224
HBUT415426 HBUT_0269HBUT_0110HBUT_0269HBUT_0269HBUT_1203HBUT_1203
TACI273075 TA1350TA1330TA1350TA1350TA1330TA1330
PAER178306 PAE1552PAE1985PAE1552PAE1552PAE1985PAE1985
CKOR374847 KCR_1250KCR_1251KCR_1250KCR_1250KCR_0501KCR_1331
PHOR70601 PH1282PH0726PH1282PH1282PH0726PH0726
PPEN278197 PEPE_1630PEPE_0189PEPE_1627PEPE_1630PEPE_1630PEPE_1631PEPE_1631
LBRE387344 LVIS_2023LVIS_2210LVIS_1755LVIS_2023LVIS_2023LVIS_2026LVIS_2026
PABY272844 PAB0593PAB1502PAB0593PAB0593PAB1502PAB1502
PFUR186497 PF0676PF0594PF0676PF0676PF0594PF0594
TKOD69014 TK2158TK0871TK2158TK2158TK0871TK0871
LSAK314315 LSA0372LSA0371LSA0374LSA0372LSA0071LSA0371LSA0371
MMAR368407 MEMAR_0247MEMAR_0999MEMAR_0247MEMAR_0247MEMAR_0999MEMAR_0999
SAGA211110 GBS2084GBS2124GBS2125GBS2084GBS2084GBS2085GBS2085
PACN267747 PPA0585PPA0584PPA0582PPA0585PPA0585PPA0584PPA0584
SAGA208435 SAG_2125SAG_2165SAG_2166SAG_2125SAG_2125SAG_2126SAG_2126
SAGA205921 SAK_2064SAK_2123SAK_2124SAK_2064SAK_2064SAK_2065SAK_2065
LLAC272622 LACR_2319LACR_0860LACR_2320LACR_2318LACR_2318LACR_2321LACR_2321
LLAC272623 L0112L0109L0111L92850L0112L0109L0109
APER272557 APE1968APE1968APE1968APE1992APE1992
TVOL273116 TVN0259TVN0259TVN0259TVN0272TVN0272
SEPI176280 SE_0102SE_2216SE_0105SE_0228SE_0228SE_0103SE_0103


Organism features enriched in list (features available for 28 out of the 28 orgs in the list)
Feature    Pvalue       Num occurrences in list  Total num occurrences  
Disease:Tick-borne_relapsing_fever 0.002228122
Disease:and_meningitis 0.002228122
Endospores:No 2.957e-622211
GC_Content_Range4:60-100 0.00263301145
GC_Content_Range7:60-70 0.00485211134
Genome_Size_Range5:0-2 0.000081117155
Genome_Size_Range9:1-2 0.002040113128
Gram_Stain:Gram_Neg 0.00001375333
Optimal_temp.:- 0.00053524257
Optimal_temp.:100 0.006385123
Optimal_temp.:40 0.006385123
Oxygen_Req:Aerobic 0.00660653185
Oxygen_Req:Facultative 0.006675216201
Shape:Coccus 0.00050671182
Shape:Irregular_coccus 0.0058646417
Shape:Rod 5.453e-74347
Shape:Sphere 0.0087574419
Temp._range:Hyperthermophilic 2.822e-6823
Temp._range:Mesophilic 0.005708517473



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ORGANISMS DEPLETED FOR GROUP:




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PHYLOGENETIC PROFILE SIMILARITY WITH KNOWN PATHWAYS:

Pathways or complexes with absolute value of Pearson coefficient with respect to candidate larger than 0.4 are listed below
The candidate is assumed to exist in orgs listed in section List of organisms containing most genes from the group


Pathway or complex  # Orgs containing it  # of those orgs also containing candidate  Pearson Coeff  
ARGDEGRAD-PWY (arginine degradation V (arginine deiminase pathway))1651240.6383
PWY0-1314 (fructose degradation)2241240.4651
PWY-5480 (pyruvate fermentation to ethanol I)109770.4433
P441-PWY (superpathway of N-acetylneuraminate degradation)63540.4359
LACTOSECAT-PWY (lactose and galactose degradation I)71560.4113
PWY-5497 (purine nucleotides degradation IV (anaerobic))122790.4100
PWY0-301 (L-ascorbate degradation, anaerobic)84620.4080



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PAIRWISE GENOME CONTEXT SCORE MATRIX:

  G7489   G6861   G6188   EG12384   EG10069   EG10067   
G74930.9995280.9988040.999860.9998340.9995730.999564
G74890.9987530.9994980.9994630.9999040.999919
G68610.9988980.9989370.9986720.998859
G61880.9998430.9995780.999591
EG123840.9995730.999594
EG100690.999993
EG10067



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PAIRWISE BLAST SCORES:

  G7493   G7489   G6861   G6188   EG12384   EG10069   EG10067   
G74930.0f0--4.0e-542.8e-30--
G7489-0.0f0---1.0e-94.6e-9
G6861--0.0f0----
G61881.6e-59--0.0f01.8e-35--
EG123841.1e-42--5.0e-400.0f0--
EG10069-----0.0f00
EG10067-----00.0f0



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PATHWAYS OR PROTEIN COMPLEX MATCHES IN TARGET ORG:

For each case, all genes involved in the pathway or complex are listed. For each gene we list: a tag indicating whether the gene is part of the candidate list or not, the average and the minimum scores of the gene to the candidate list, the gene name, and its product names.

- ARG+POLYAMINE-SYN (superpathway of arginine and polyamine biosynthesis) (degree of match pw to cand: 0.111, degree of match cand to pw: 0.286, average score: 0.781)
  Genes in pathway or complex:
             0.4601 0.2032 EG10963 (speE) SPERMIDINESYN-MONOMER (SpeE)
             0.9319 0.8360 EG10131 (cadA) LYSDECARBOX-MONOMER (CadA)
             0.9216 0.8174 G6094 (ldcC) LDC2-MONOMER (LdcC)
             0.6152 0.2721 EG10962 (speD) SPED-MONOMER (adenosylmethionine decarboxylase, proenzyme)
             0.8521 0.7318 EG10961 (speC) ORNDECARBOX-BIO-MONOMER (SpeC)
             0.6474 0.1589 EG10959 (speA) ARGDECARBOXBIO-MONOMER (SpeA)
             0.4371 0.1949 EG10960 (speB) AGMATIN-MONOMER (SpeB)
             0.8429 0.5172 EG10063 (argA) N-ACETYLTRANSFER-MONOMER (ArgA)
             0.7581 0.2753 EG10064 (argB) ACETYLGLUTKIN-MONOMER (acetylglutamate kinase monomer)
             0.6776 0.3019 EG10065 (argC) N-ACETYLGLUTPREDUCT-MONOMER (N-acetylglutamylphosphate reductase)
             0.8224 0.4916 EG10066 (argD) ACETYLORNTRANSAM-MONOMER (ArgD)
             0.7082 0.5504 EG11286 (argE) ACETYLORNDEACET-MONOMER (ArgE)
             0.6901 0.3440 EG10134 (carA) CARBPSYN-SMALL (CarA)
             0.7245 0.4439 EG10135 (carB) CARBPSYN-LARGE (CarB)
   *in cand* 0.9996 0.9989 EG10067 (argF) CHAINF-MONOMER (ArgF)
   *in cand* 0.9996 0.9987 EG10069 (argI) CHAINI-MONOMER (ArgI)
             0.8009 0.1453 EG11223 (argH) ARGSUCCINLYA-MONOMER (argininosuccinate lyase)
             0.8319 0.6304 EG10068 (argG) ARGSUCCINSYN-MONOMER (ArgG)
  Genes in candidate but not in this pathway or complex:
   *in cand* 0.9996 0.9989 EG12384 (ybcF) EG12384-MONOMER (predicted carbamate kinase)
   *in cand* 0.9996 0.9989 G6188 (yahI) G6188-MONOMER (predicted carbamate kinase-like protein)
   *in cand* 0.9990 0.9987 G6861 (ydgI) ARCD-MONOMER (ArcD APC transporter)
   *in cand* 0.9996 0.9988 G7489 (ygeW) G7489-MONOMER (putative carbamoyltransferase)
   *in cand* 0.9996 0.9988 G7493 (yqeA) G7493-MONOMER (predicted amino acid kinase)

- ARGSYN-PWY (arginine biosynthesis I) (degree of match pw to cand: 0.182, degree of match cand to pw: 0.286, average score: 0.905)
  Genes in pathway or complex:
             0.8319 0.6304 EG10068 (argG) ARGSUCCINSYN-MONOMER (ArgG)
             0.8009 0.1453 EG11223 (argH) ARGSUCCINLYA-MONOMER (argininosuccinate lyase)
   *in cand* 0.9996 0.9987 EG10069 (argI) CHAINI-MONOMER (ArgI)
   *in cand* 0.9996 0.9989 EG10067 (argF) CHAINF-MONOMER (ArgF)
             0.6901 0.3440 EG10134 (carA) CARBPSYN-SMALL (CarA)
             0.7245 0.4439 EG10135 (carB) CARBPSYN-LARGE (CarB)
             0.7082 0.5504 EG11286 (argE) ACETYLORNDEACET-MONOMER (ArgE)
             0.8224 0.4916 EG10066 (argD) ACETYLORNTRANSAM-MONOMER (ArgD)
             0.6776 0.3019 EG10065 (argC) N-ACETYLGLUTPREDUCT-MONOMER (N-acetylglutamylphosphate reductase)
             0.7581 0.2753 EG10064 (argB) ACETYLGLUTKIN-MONOMER (acetylglutamate kinase monomer)
             0.8429 0.5172 EG10063 (argA) N-ACETYLTRANSFER-MONOMER (ArgA)
  Genes in candidate but not in this pathway or complex:
   *in cand* 0.9996 0.9989 EG12384 (ybcF) EG12384-MONOMER (predicted carbamate kinase)
   *in cand* 0.9996 0.9989 G6188 (yahI) G6188-MONOMER (predicted carbamate kinase-like protein)
   *in cand* 0.9990 0.9987 G6861 (ydgI) ARCD-MONOMER (ArcD APC transporter)
   *in cand* 0.9996 0.9988 G7489 (ygeW) G7489-MONOMER (putative carbamoyltransferase)
   *in cand* 0.9996 0.9988 G7493 (yqeA) G7493-MONOMER (predicted amino acid kinase)



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GENOME CONTEXT INFORMATION:

Each row corresponds to a replicon in an organism, each column to a gene in the candidate. The second column indicates whether the organims was included in the list used to compute the genome context scores or not. Some organisms are not included because they are phylogenetically too similar to others already in the list.
The number in the matrix indicate the position of the homolog of the gene in the replicon. All numbers are relative to the smaller one, which is assigned a position of zero. Two columns with the same number indicate that the two genes matched the same gene in that organism.

Genome browser links for gene clusters

The links below opens a genome browser BioCyc page for each cluster of genes in the target genome. These pages shows the central gene of the cluster in the target genome and its best homolog in the reference genomes, for the genomes that contain homologs for at least 75% of the genes in the group. Only one genome per phylogenetic cluster of organisms is shown, to keep the list smaller.

G7489 G7493 (centered at G7493)
EG10067 (centered at EG10067)
EG10069 (centered at EG10069)
EG12384 (centered at EG12384)
G6188 (centered at G6188)
G6861 (centered at G6861)


ORG:REPLICON:CIRC?\GENE  IN REF LIST  G7493   G7489   G6861   G6188   EG12384   EG10069   EG10067   
197/623334/623195/623198/623198/623347/623350/623
AAEO224324:0:Tyes-----0-
AAUR290340:1:Tyes0--00--
AAUR290340:2:Tyes-----00
ABAC204669:0:Tyes12364-1100
ABAU360910:0:Tyes--0----
ABOR393595:0:Tyes------0
ABUT367737:0:Tyes-0---00
ACAU438753:0:Tyes--0--30783078
ACEL351607:0:Tyes----2-0
ADEH290397:0:Tyes------0
AEHR187272:0:Tyes-0---00
AFER243159:0:Tyes-----00
AFUL224325:0:Tyes-----00
AHYD196024:0:Tyes406264183118301830
AMAR329726:9:Tyes-0---00
AMET293826:0:Tyes01-0011
ANAE240017:0:Tyes10-1100
AORE350688:0:Tyes0--00--
APER272557:0:Tyes0--002424
APLE416269:0:Tyes240-0240240239239
APLE434271:0:Tno245-0245245244244
ASAL382245:5:Tyes0112560011
ASP1667:3:Tyes-0---00
ASP232721:2:Tyes------0
ASP62977:0:Tyes--50---0
ASP76114:2:Tyes-0-----
AVAR240292:3:Tyes-0---00
BABO262698:1:Tno-----0-
BAFZ390236:2:Fyes-0---00
BAMB339670:2:Tno--0----
BAMB398577:2:Tno3203322
BAMY326423:0:Tyes--1919--00
BANT260799:0:Tno--0--1896-
BANT261594:2:Tno--0--1904-
BANT568206:2:Tyes--0--2006-
BANT592021:2:Tno--0--2008-
BAPH198804:0:Tyes-0---00
BAPH372461:0:Tyes-----00
BBAC360095:0:Tyes-----0-
BBUR224326:21:Fno-0---00
BCAN483179:1:Tno-----0-
BCER226900:1:Tyes2012200
BCER288681:0:Tno--0--18101810
BCER315749:1:Tyes2012200
BCER405917:1:Tyes2012200
BCER572264:1:Tno--0----
BCLA66692:0:Tyes-0---00
BFRA272559:1:Tyes-0-----
BFRA295405:0:Tno-0-----
BGAR290434:2:Fyes-0---00
BHAL272558:0:Tyes-0---00
BHER314723:0:Fyes20-2200
BJAP224911:0:Fyes-06264----
BLIC279010:0:Tyes2929292729280292929272927
BLON206672:0:Tyes-0---00
BMAL243160:1:Tno3203322
BMAL320388:1:Tno3203322
BMAL320389:1:Tyes0130011
BMEL224914:1:Tno-----0-
BMEL359391:1:Tno-----0-
BOVI236:1:Tyes-----0-
BPET94624:0:Tyes--0----
BPSE272560:1:Tyes3203322
BPSE320372:1:Tno0130011
BPSE320373:1:Tno0130011
BPUM315750:0:Tyes--1947--0-
BSP107806:2:Tyes-----00
BSP36773:1:Tyes--0----
BSP376:0:Tyes-0-----
BSUB:0:Tyes-02336--00
BSUI204722:1:Tyes-----0-
BSUI470137:1:Tno-----0-
BTHA271848:1:Tno3203322
BTHE226186:0:Tyes-0-----
BTHU281309:1:Tno2012200
BTHU412694:1:Tno2012200
BTUR314724:0:Fyes20-2200
BVIE269482:6:Tyes--0----
BWEI315730:4:Tyes--0--18021802
BXEN266265:0:Tyes0140011
CABO218497:0:Tyes--0----
CACE272562:1:Tyes-0---00
CAULO:0:Tyes--0----
CBEI290402:0:Tyes10-11467467
CBLO203907:0:Tyes-----00
CBLO291272:0:Tno-----00
CBOT36826:1:Tno1009130401009100910081008
CBOT441770:0:Tyes90612180906906905905
CBOT441771:0:Tno82711400827827826826
CBOT441772:1:Tno96212380962962961961
CBOT498213:1:Tno98412980984984983983
CBOT508765:1:Tyes10167511-2474
CBOT515621:2:Tyes1117142601117111711161116
CBOT536232:0:Tno1044141301044104410431043
CCAV227941:1:Tyes--0----
CCON360104:2:Tyes-0---00
CCUR360105:0:Tyes------0
CDES477974:0:Tyes-0---00
CDIF272563:1:Tyes-----00
CDIP257309:0:Tyes--0----
CEFF196164:0:Fyes--0----
CFEL264202:1:Tyes--0----
CGLU196627:0:Tyes--0----
CHOM360107:1:Tyes-0---00
CHUT269798:0:Tyes-0-----
CHYD246194:0:Tyes-0---00
CJEI306537:0:Tyes--0----
CJEJ192222:0:Tyes-0-----
CJEJ195099:0:Tno-0-----
CJEJ354242:2:Tyes-0-----
CJEJ407148:0:Tno-0-----
CKLU431943:1:Tyes-----00
CKOR374847:0:Tyes749750-7497490834
CMAQ397948:0:Tyes1749--1749174900
CMET456442:0:Tyes-0---00
CMIC31964:2:Tyes-----00
CMIC443906:2:Tyes-0---00
CMUR243161:1:Tyes--0----
CNOV386415:0:Tyes-0---00
CPER195102:1:Tyes2012200
CPER195103:0:Tno2120912200
CPER289380:3:Tyes2012200
CPHY357809:0:Tyes26550-2655265500
CPNE115711:1:Tyes--0----
CPNE115713:0:Tno--0----
CPNE138677:0:Tno--0----
CPNE182082:0:Tno--0----
CSAL290398:0:Tyes-0-----
CSP501479:8:Fyes-----0-
CSP78:2:Tyes3-10043300
CSUL444179:0:Tyes-0-----
CTET212717:0:Tyes0--00--
CTRA471472:0:Tyes--0----
CTRA471473:0:Tno--0----
CVIO243365:0:Tyes0130011
DDES207559:0:Tyes-----00
DETH243164:0:Tyes------0
DGEO319795:1:Tyes-----00
DHAF138119:0:Tyes-0---00
DNOD246195:0:Tyes01-0011
DOLE96561:0:Tyes-----00
DPSY177439:2:Tyes-----00
DRED349161:0:Tyes-----00
DSHI398580:5:Tyes10-1100
DSP216389:0:Tyes------0
DSP255470:0:Tno------0
DVUL882:1:Tyes-----00
ECAR218491:0:Tyes-0---00
ECOL199310:0:Tno294729431512018948214821
ECOL316407:0:Tno2604260013404924300
ECOL331111:6:Tno273727331411021443034303
ECOL362663:0:Tno246624621142017840804080
ECOL364106:1:Tno290328991440019744884488
ECOL405955:2:Tyes255825541211017540814081
ECOL409438:6:Tyes284728431403020343124312
ECOL413997:0:Tno244124371289019238793879
ECOL439855:4:Tno258325791202021242354235
ECOL469008:0:Tno0411852455225729022902
ECOL481805:0:Tno0411982477227929342934
ECOL585034:0:Tno264326391329020540934093
ECOL585035:0:Tno273127271274018843454345
ECOL585055:0:Tno280628021439020744184418
ECOL585056:2:Tno287728731539020344224422
ECOL585057:0:Tno294829441112012143744374
ECOL585397:0:Tno291329091403018946244624
ECOL83334:0:Tno345534511979021249864986
ECOLI:0:Tno2661265713635124840560
ECOO157:0:Tno347334692027021449704970
EFAE226185:3:Tyes23192321-231926800
EFER585054:1:Tyes03864997013638643864
ESP42895:1:Tyes2715014162715199
FJOH376686:0:Tyes-0-----
FMAG334413:1:Tyes5920-59259200
FNOD381764:0:Tyes11060-1106110600
FSP106370:0:Tyes-----0-
FSP1855:0:Tyes-0----0
FSUC59374:0:Tyes-0-----
GBET391165:0:Tyes-0---00
GFOR411154:0:Tyes-0-----
GKAU235909:1:Tyes--167--00
GMET269799:1:Tyes25870-25872587-0
GOXY290633:5:Tyes-----00
GSUL243231:0:Tyes2323--2323232300
GTHE420246:1:Tyes--172--00
GURA351605:0:Tyes-0---00
GVIO251221:0:Tyes-0---00
HACI382638:1:Tyes-0-----
HAUR316274:2:Tyes-0---00
HBUT415426:0:Tyes1560-15615610621062
HCHE349521:0:Tyes0130011
HDUC233412:0:Tyes--295--00
HHEP235279:0:Tyes-0-----
HINF281310:0:Tyes1--1100
HINF374930:0:Tyes0--00--
HINF71421:0:Tno0--0011
HMAR272569:8:Tyes-0-----
HMOD498761:0:Tyes12251226-1225122500
HMUK485914:1:Tyes------0
HNEP81032:0:Tyes-0-----
HPY:0:Tno-0-----
HPYL357544:1:Tyes-0-----
HPYL85963:0:Tno-0-----
HSAL478009:3:Tyes0--00--
HSOM205914:1:Tyes--0----
HSP64091:1:Tno0--00--
HWAL362976:1:Tyes-----0-
IHOS453591:0:Tyes-0---00
JSP290400:1:Tyes-----0-
JSP375286:0:Tyes0--02479--
KPNE272620:2:Tyes-34300--34303430
LBRE387344:2:Tyes2594390259259262262
LINN272626:1:Tno-----00
LJOH257314:0:Tyes--0----
LLAC272622:5:Tyes1379013801378137813811381
LLAC272623:0:Tyes03403353370340340
LMES203120:1:Tyes-0---00
LMON169963:0:Tno30-3315661566
LMON265669:0:Tyes30-3315521552
LPLA220668:0:Tyes-2-0-22
LREU557436:0:Tyes1-231100
LSAK314315:0:Tyes3063053083060305305
LSPH444177:1:Tyes01129-0011291129
LWEL386043:0:Tyes-----00
LXYL281090:0:Tyes--1547--00
MABS561007:1:Tyes-0----0
MACE188937:0:Tyes-----00
MAEO419665:0:Tyes-0-----
MAER449447:0:Tyes-----00
MART243272:0:Tyes10-1100
MAVI243243:0:Tyes-----00
MBAR269797:1:Tyes-----00
MBOV233413:0:Tno-0---00
MBOV410289:0:Tno-0---00
MBUR259564:0:Tyes-0---00
MCAP243233:0:Tyes-----00
MCAP340047:0:Tyes5320-53253200
MFLA265072:0:Tyes-0-----
MGIL350054:3:Tyes-0----0
MHUN323259:0:Tyes------0
MJAN243232:2:Tyes-0---00
MLAB410358:0:Tyes-----00
MLEP272631:0:Tyes------0
MLOT266835:2:Tyes--0----
MMAG342108:0:Tyes-----0-
MMAR368407:0:Tyes0768-00768768
MMAR394221:0:Tyes-2140----
MMAZ192952:0:Tyes------0
MMYC272632:0:Tyes1680-168168--
MPEN272633:0:Tyes10-1100
MPNE272634:0:Tyes1--1100
MSME246196:0:Tyes--0--23472347
MSP164756:1:Tno-----0-
MSP189918:2:Tyes-----0-
MSP266779:3:Tyes38850-2255225522562256
MSP400668:0:Tyes-0---00
MSTA339860:0:Tyes-0---2828
MSUC221988:0:Tyes--0--537537
MTBCDC:0:Tno-0---00
MTBRV:0:Tno-0---00
MTHE187420:0:Tyes-0---00
MTHE264732:0:Tyes16346-1630327327
MTHE349307:0:Tyes-0-----
MTUB336982:0:Tno-0---00
MTUB419947:0:Tyes-0---00
MVAN350058:0:Tyes0130011
MXAN246197:0:Tyes-0-----
NARO279238:0:Tyes-14990--1499-
NFAR247156:2:Tyes--1346--0-
NGON242231:0:Tyes-0---00
NHAM323097:2:Tyes-0-----
NMEN122586:0:Tno-0---00
NMEN122587:0:Tyes-0---00
NMEN272831:0:Tno-0---00
NMEN374833:0:Tno-0---00
NPHA348780:2:Tyes------0
NSP103690:6:Tyes-0---00
NSP35761:1:Tyes01299250928927927
NSP387092:0:Tyes-0---00
NWIN323098:0:Tyes-0-----
OANT439375:1:Tyes1--1100
OCAR504832:0:Tyes-0-----
OIHE221109:0:Tyes-0---00
PABY272844:0:Tyes0443-00443443
PACN267747:0:Tyes3203322
PAER178306:0:Tyes0313-00313313
PAER208963:0:Tyes3203322
PAER208964:0:Tno3203322
PARC259536:0:Tyes-----00
PARS340102:0:Tyes01388-001388-
PCAR338963:0:Tyes-----00
PCRY335284:1:Tyes-0-----
PDIS435591:0:Tyes-0-----
PENT384676:0:Tyes3203322
PFLU205922:0:Tyes3203322
PFLU216595:1:Tyes3203322
PFLU220664:0:Tyes3203322
PFUR186497:0:Tyes810-818100
PHOR70601:0:Tyes5760-57657600
PISL384616:0:Tyes0--00183183
PLUM243265:0:Fyes-23410--23412341
PMAR146891:0:Tyes-0-----
PMAR167539:0:Tyes-0----0
PMAR167540:0:Tyes-0-----
PMAR167542:0:Tyes-0-----
PMAR167546:0:Tyes-0-----
PMAR167555:0:Tyes-0----0
PMAR59920:0:Tno-0-----
PMAR74546:0:Tyes-0-----
PMAR74547:0:Tyes-0-----
PMAR93060:0:Tyes-0----0
PMEN399739:0:Tyes0-30011
PMOB403833:0:Tyes11653-1100
PMUL272843:1:Tyes-6460--646646
PPEN278197:0:Tyes1358013551358135813591359
PPRO298386:2:Tyes1512151611021151200
PPUT160488:0:Tno0130011
PPUT351746:0:Tyes0130011
PPUT76869:0:Tno0130011
PRUM264731:0:Tyes-0-----
PSP312153:0:Tyes-0-----
PSP56811:2:Tyes--716--00
PSTU379731:0:Tyes0-32863289328913288
PSYR205918:0:Tyes3203322
PTHE370438:0:Tyes-0---00
PTOR263820:0:Tyes0--00147-
RAKA293614:0:Fyes--0----
RBEL336407:0:Tyes--0----
RCAN293613:0:Fyes--0----
RCAS383372:0:Tyes-0----0
RCON272944:0:Tno--0----
RDEN375451:4:Tyes--0--867-
RETL347834:5:Tyes-----0-
REUT264198:3:Tyes-0-----
REUT381666:2:Tyes-0-----
RFEL315456:2:Tyes--0----
RMAS416276:1:Tyes--0----
RMET266264:2:Tyes-0-----
RPAL258594:0:Tyes-0-----
RPAL316055:0:Tyes-0-----
RPAL316056:0:Tyes-0-----
RPAL316057:0:Tyes-0-----
RPOM246200:1:Tyes-----00
RPRO272947:0:Tyes--0----
RRIC392021:0:Fno--0----
RRIC452659:0:Tyes--0----
RRUB269796:1:Tyes-----00
RSAL288705:0:Tyes-----00
RSP101510:3:Fyes-----00
RSP357808:0:Tyes-0---00
RSPH272943:4:Tyes-0---00
RSPH349101:2:Tno-0---00
RSPH349102:5:Tyes-----0-
RTYP257363:0:Tno--0----
RXYL266117:0:Tyes042-00--
SACI330779:0:Tyes-0-----
SACI56780:0:Tyes0--00--
SAGA205921:0:Tno059600011
SAGA208435:0:Tno040410011
SAGA211110:0:Tyes040410011
SALA317655:1:Tyes-01829----
SARE391037:0:Tyes-0----1504
SAUR158878:1:Tno1151815171516151600
SAUR158879:1:Tno1152115201519151900
SAUR196620:0:Tno1155915581557155700
SAUR273036:0:Tno1148414831482148200
SAUR282458:0:Tno1157015691568156800
SAUR282459:0:Tno1147314721471147100
SAUR359786:1:Tno1146214611460146000
SAUR359787:1:Tno1143014291428142800
SAUR367830:3:Tno97924212241924199780
SAUR418127:0:Tyes1151415131512151200
SAUR426430:0:Tno1150615051504150400
SAUR93061:0:Fno1179417931792179200
SAUR93062:1:Tno1144014391438143800
SAVE227882:1:Fyes-28670--15301530
SBAL399599:3:Tyes--0----
SBAL402882:1:Tno--0----
SBOY300268:1:Tyes1494251801494149425182518
SCO:2:Fyes-0543--00
SDEG203122:0:Tyes-0-----
SDYS300267:1:Tyes-25360--25362536
SELO269084:0:Tyes------0
SENT209261:0:Tno301930220301993230223022
SENT220341:0:Tno384738509403847038503850
SENT295319:0:Tno277827810277878327812781
SENT321314:2:Tno382238269443822038263826
SENT454169:2:Tno406140659734061040654065
SEPI176279:1:Tyes10220102102101101
SEPI176280:0:Tno02171312612611
SERY405948:0:Tyes-----00
SFLE198214:0:Tyes0365711280036573657
SFLE373384:0:Tno0356110730035613561
SFUM335543:0:Tyes0--00--
SGLO343509:3:Tyes-0---00
SGOR29390:0:Tyes01-0011
SHAE279808:0:Tyes1-1101100
SHAL458817:0:Tyes540-445353
SHIGELLA:0:Tno0357011420035703570
SLAC55218:1:Fyes10-1100
SMAR399550:0:Tyes1154-111100
SMED366394:1:Tyes6506655
SMEL266834:0:Tyes105461100
SMUT210007:0:Tyes0273-00273273
SONE211586:1:Tyes-036---0
SPEA398579:0:Tno--0----
SPNE1313:0:Tyes10-1100
SPNE170187:0:Tyes10-1100
SPNE171101:0:Tno10-1100
SPNE487213:0:Tno10-1100
SPNE487214:0:Tno10-1100
SPNE488221:0:Tno10-1100
SPRO399741:1:Tyes2668267120652668266800
SPYO160490:0:Tno03-0033
SPYO186103:0:Tno03-0033
SPYO193567:0:Tno30-3300
SPYO198466:0:Tno03-0033
SPYO286636:0:Tno03-0033
SPYO293653:0:Tno03-0033
SPYO319701:0:Tyes03-0033
SPYO370551:0:Tno03-0033
SPYO370552:0:Tno03-0033
SPYO370553:0:Tno03-0033
SPYO370554:0:Tyes03-0033
SRUB309807:1:Tyes-0-----
SSAP342451:2:Tyes-----00
SSON300269:1:Tyes258525821188018339093909
SSP1148:0:Tyes2710-27127100
SSP292414:2:Tyes-----00
SSP321327:0:Tyes-----00
SSP321332:0:Tyes-----00
SSP387093:0:Tyes-0---00
SSP644076:5:Fyes-----00
SSP64471:0:Tyes-0-----
SSP84588:0:Tyes-0-----
SSP94122:1:Tyes-320---32
SSUI391295:0:Tyes10-1100
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