CANDIDATE ID: 345

CANDIDATE ID: 345

NUMBER OF GENES: 7
AVERAGE SCORE:    9.9926752e-1 (range=[0.0,1.0])
AVERAGE MINIMUM BLAST P-VAL:    7.1428571e-1

Gene List
List of organisms containing most genes from the group
    Phylogenetic tree highlighting these organisms (opens new page)
List of organisms containing very few or no genes from the group
List of organisms enriched for group
List of organisms depleted for group
Phylogenetic profile similarity with known pathways
Pairwise genome context scores
Pairwise Blast scores
Pathway or protein complex matches in target organism
Genome context matrix
    Genes and their orthologs in genome browser BioCyc pages




GENE LIST:

- G7596 (ygjG) (b3073)
   Products of gene:
     - G7596-MONOMER (putrescine aminotransferase / diamine transaminase)
       Reactions:
        putrescine + 2-oxoglutarate  =  4-aminobutanal + L-glutamate
         In pathways
         ORNARGDEG-PWY (superpathway of arginine and ornithine degradation)
         ARGDEG-PWY (superpathway of arginine, putrescine, and 4-aminobutyrate degradation)
         ORNDEG-PWY (superpathway of ornithine degradation)
         PUTDEG-PWY (putrescine degradation I)
        an aliphatic alpha,omega-diamine + 2-oxoglutarate  =  an aliphatic omega-aminoaldehyde + L-glutamate
         In pathways
         ORNARGDEG-PWY (superpathway of arginine and ornithine degradation)
         ARGDEG-PWY (superpathway of arginine, putrescine, and 4-aminobutyrate degradation)
         ORNDEG-PWY (superpathway of ornithine degradation)
         PUTDEG-PWY (putrescine degradation I)

- G6944 (astC) (b1748)
   Products of gene:
     - SUCCORNTRANSAM-MONOMER (AstC)
     - SUCCORNTRANSAM-CPLX (acetylornithine transaminase, catabolic / succinylornithine transaminase)
       Reactions:
        N-acetyl-L-ornithine + 2-oxoglutarate  =  N-acetyl-L-glutamate 5-semialdehyde + L-glutamate
         In pathways
         ARG+POLYAMINE-SYN (superpathway of arginine and polyamine biosynthesis)
         ARGSYN-PWY (arginine biosynthesis I)
         GLUTORN-PWY (ornithine biosynthesis)
         ARGSYNBSUB-PWY (ARGSYNBSUB-PWY)
         PWY-5154 (PWY-5154)
        N2-succinyl-L-ornithine + 2-oxoglutarate  ->  N2-succinyl-L-glutamate 5-semialdehyde + L-glutamate
         In pathways
         AST-PWY (arginine degradation II (AST pathway))

- EG10068 (argG) (b3172)
   Products of gene:
     - ARGSUCCINSYN-MONOMER (ArgG)
     - CPLX0-238 (argininosuccinate synthase)
       Reactions:
        L-aspartate + L-citrulline + ATP  =  L-arginino-succinate + diphosphate + AMP + 2 H+
         In pathways
         PWY-5004 (PWY-5004)
         ARG+POLYAMINE-SYN (superpathway of arginine and polyamine biosynthesis)
         ARGININE-SYN4-PWY (ARGININE-SYN4-PWY)
         PWY-4983 (PWY-4983)
         PWY-4984 (PWY-4984)
         ARGSYN-PWY (arginine biosynthesis I)
         ARGSYNBSUB-PWY (ARGSYNBSUB-PWY)
         PWY-5154 (PWY-5154)

- EG10067 (argF) (b0273)
   Products of gene:
     - CHAINF-MONOMER (ArgF)
     - ORNCARBAMTRANSFERF-CPLX (ornithine carbamoyltransferase chain F)
       Reactions:
        L-ornithine + carbamoyl-phosphate  =  L-citrulline + phosphate + H+
         In pathways
         ARGORNPROST-PWY (ARGORNPROST-PWY)
         ARGDEGRAD-PWY (ARGDEGRAD-PWY)
         PWY-5004 (PWY-5004)
         ARG+POLYAMINE-SYN (superpathway of arginine and polyamine biosynthesis)
         ARGININE-SYN4-PWY (ARGININE-SYN4-PWY)
         CITRULLINE-DEG-PWY (CITRULLINE-DEG-PWY)
         PWY-4981 (PWY-4981)
         PWY-4984 (PWY-4984)
         ARGSYN-PWY (arginine biosynthesis I)
         ARGSYNBSUB-PWY (ARGSYNBSUB-PWY)
         CITRULBIO-PWY (CITRULBIO-PWY)

- EG10066 (argD) (b3359)
   Products of gene:
     - ACETYLORNTRANSAM-MONOMER (ArgD)
     - ACETYLORNTRANSAM-CPLX (N-succinyldiaminopimelate-aminotransferase / acetylornithine transaminase)
       Reactions:
        2-oxoglutarate + N-succinyl-L,L-2,6-diaminopimelate  =  L-glutamate + N-succinyl-2-amino-6-ketopimelate
         In pathways
         PWY0-781 (aspartate superpathway)
         P4-PWY (superpathway of lysine, threonine and methionine biosynthesis I)
         DAPLYSINESYN-PWY (lysine biosynthesis I)
        N-acetyl-L-ornithine + 2-oxoglutarate  =  N-acetyl-L-glutamate 5-semialdehyde + L-glutamate
         In pathways
         ARG+POLYAMINE-SYN (superpathway of arginine and polyamine biosynthesis)
         ARGSYN-PWY (arginine biosynthesis I)
         GLUTORN-PWY (ornithine biosynthesis)
         ARGSYNBSUB-PWY (ARGSYNBSUB-PWY)
         PWY-5154 (PWY-5154)

- EG10065 (argC) (b3958)
   Products of gene:
     - N-ACETYLGLUTPREDUCT-MONOMER (N-acetylglutamylphosphate reductase)
       Reactions:
        N-acetyl-L-glutamate 5-semialdehyde + NADP+ + phosphate  =  N-acetylglutamyl-phosphate + NADPH + H+
         In pathways
         ARG+POLYAMINE-SYN (superpathway of arginine and polyamine biosynthesis)
         ARGSYN-PWY (arginine biosynthesis I)
         GLUTORN-PWY (ornithine biosynthesis)
         ARGSYNBSUB-PWY (ARGSYNBSUB-PWY)
         PWY-5154 (PWY-5154)

- EG10064 (argB) (b3959)
   Products of gene:
     - ACETYLGLUTKIN-MONOMER (acetylglutamate kinase monomer)
     - ACETYLGLUTKIN-CPLX (acetylglutamate kinase)
       Reactions:
        N-acetyl-L-glutamate + ATP  ->  N-acetylglutamyl-phosphate + ADP + H+
         In pathways
         ARG+POLYAMINE-SYN (superpathway of arginine and polyamine biosynthesis)
         ARGSYN-PWY (arginine biosynthesis I)
         GLUTORN-PWY (ornithine biosynthesis)
         ARGSYNBSUB-PWY (ARGSYNBSUB-PWY)
         PWY-5154 (PWY-5154)



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ORGANISMS CONTAINING AT LEAST 6 GENES FROM THE GROUP:

Total number of orgs: 231
Effective number of orgs (counting one per cluster within 468 clusters): 178

Organism list
Homologs in each organism in the list
Features enriched in organism list


Follow (ncbi) link, when present, to find the set of organism features for each organism
Org ID  Org Name  # genes in group found in org  
YPSE349747 ncbi Yersinia pseudotuberculosis IP 317586
YPSE273123 ncbi Yersinia pseudotuberculosis IP 329536
YPES386656 ncbi Yersinia pestis Pestoides F6
YPES377628 ncbi Yersinia pestis Nepal5166
YPES360102 ncbi Yersinia pestis Antiqua6
YPES349746 ncbi Yersinia pestis Angola6
YPES214092 ncbi Yersinia pestis CO926
YPES187410 ncbi Yersinia pestis KIM 106
YENT393305 ncbi Yersinia enterocolitica enterocolitica 80816
XAUT78245 ncbi Xanthobacter autotrophicus Py26
VVUL216895 ncbi Vibrio vulnificus CMCP66
VVUL196600 ncbi Vibrio vulnificus YJ0166
VPAR223926 ncbi Vibrio parahaemolyticus RIMD 22106336
VFIS312309 ncbi Vibrio fischeri ES1146
VCHO345073 ncbi Vibrio cholerae O3956
VCHO ncbi Vibrio cholerae O1 biovar El Tor str. N169616
TTUR377629 ncbi Teredinibacter turnerae T79016
TTHE300852 ncbi Thermus thermophilus HB86
TTHE262724 ncbi Thermus thermophilus HB276
TTEN273068 ncbi Thermoanaerobacter tengcongensis MB47
TSP28240 Thermotoga sp.7
TSP1755 Thermoanaerobacter sp.7
TPSE340099 ncbi Thermoanaerobacter pseudethanolicus ATCC 332237
TPET390874 ncbi Thermotoga petrophila RKU-17
TMAR243274 ncbi Thermotoga maritima MSB87
TLET416591 ncbi Thermotoga lettingae TMO7
TFUS269800 ncbi Thermobifida fusca YX6
TERY203124 ncbi Trichodesmium erythraeum IMS1017
TELO197221 ncbi Thermosynechococcus elongatus BP-17
TCRU317025 ncbi Thiomicrospira crunogena XCL-27
SWOL335541 ncbi Syntrophomonas wolfei wolfei Goettingen6
STYP99287 ncbi Salmonella enterica enterica serovar Typhimurium str. LT27
STHE292459 ncbi Symbiobacterium thermophilum IAM 148637
SSP94122 ncbi Shewanella sp. ANA-36
SSP644076 Silicibacter sp. TrichCH4B7
SSP321332 ncbi Synechococcus sp. JA-2-3Ba(2-13)7
SSP321327 ncbi Synechococcus sp. JA-3-3Ab6
SSP292414 ncbi Ruegeria sp. TM10407
SSP1148 ncbi Synechocystis sp. PCC 68037
SSON300269 ncbi Shigella sonnei Ss0467
SSAP342451 ncbi Staphylococcus saprophyticus saprophyticus ATCC 153056
SPRO399741 ncbi Serratia proteamaculans 5686
SONE211586 ncbi Shewanella oneidensis MR-16
SMEL266834 ncbi Sinorhizobium meliloti 10216
SMED366394 ncbi Sinorhizobium medicae WSM4196
SLAC55218 Ruegeria lacuscaerulensis7
SHIGELLA ncbi Shigella flexneri 2a str. 2457T7
SHAL458817 ncbi Shewanella halifaxensis HAW-EB46
SFUM335543 ncbi Syntrophobacter fumaroxidans MPOB6
SFLE373384 ncbi Shigella flexneri 5 str. 84017
SFLE198214 ncbi Shigella flexneri 2a str. 3017
SERY405948 ncbi Saccharopolyspora erythraea NRRL 23386
SEPI176280 ncbi Staphylococcus epidermidis ATCC 122286
SEPI176279 ncbi Staphylococcus epidermidis RP62A6
SENT454169 ncbi Salmonella enterica enterica serovar Heidelberg str. SL4767
SENT321314 ncbi Salmonella enterica enterica serovar Choleraesuis str. SC-B677
SENT295319 ncbi Salmonella enterica enterica serovar Paratyphi A str. ATCC 91507
SENT220341 ncbi Salmonella enterica enterica serovar Typhi str. CT187
SENT209261 ncbi Salmonella enterica enterica serovar Typhi str. Ty27
SELO269084 ncbi Synechococcus elongatus PCC 63017
SDYS300267 ncbi Shigella dysenteriae Sd1976
SCO ncbi Streptomyces coelicolor A3(2)7
SBOY300268 ncbi Shigella boydii Sb2277
SAVE227882 ncbi Streptomyces avermitilis MA-46807
SACI56780 ncbi Syntrophus aciditrophicus SB6
RXYL266117 ncbi Rubrobacter xylanophilus DSM 99416
RSPH349102 ncbi Rhodobacter sphaeroides ATCC 170256
RSPH349101 ncbi Rhodobacter sphaeroides ATCC 170297
RSPH272943 ncbi Rhodobacter sphaeroides 2.4.17
RSP357808 ncbi Roseiflexus sp. RS-17
RSP101510 ncbi Rhodococcus jostii RHA17
RRUB269796 ncbi Rhodospirillum rubrum ATCC 111707
RPOM246200 ncbi Ruegeria pomeroyi DSS-37
RPAL316056 ncbi Rhodopseudomonas palustris BisB186
RPAL316055 ncbi Rhodopseudomonas palustris BisA536
RPAL258594 ncbi Rhodopseudomonas palustris CGA0096
REUT381666 ncbi Ralstonia eutropha H166
RDEN375451 ncbi Roseobacter denitrificans OCh 1146
RCAS383372 ncbi Roseiflexus castenholzii DSM 139416
PTHE370438 ncbi Pelotomaculum thermopropionicum SI7
PSYR205918 ncbi Pseudomonas syringae pv. syringae B728a6
PPUT76869 ncbi Pseudomonas putida GB-16
PPUT351746 ncbi Pseudomonas putida F16
PPUT160488 ncbi Pseudomonas putida KT24406
PPRO298386 ncbi Photobacterium profundum SS96
PMUL272843 ncbi Pasteurella multocida multocida Pm706
PMOB403833 ncbi Petrotoga mobilis SJ957
PMEN399739 ncbi Pseudomonas mendocina ymp6
PLUM243265 ncbi Photorhabdus luminescens laumondii TTO16
PFLU220664 ncbi Pseudomonas fluorescens Pf-57
PFLU216595 ncbi Pseudomonas fluorescens SBW256
PFLU205922 ncbi Pseudomonas fluorescens Pf0-16
PENT384676 ncbi Pseudomonas entomophila L486
PCAR338963 ncbi Pelobacter carbinolicus DSM 23807
PAER208964 ncbi Pseudomonas aeruginosa PAO16
PAER208963 ncbi Pseudomonas aeruginosa UCBPP-PA146
OIHE221109 ncbi Oceanobacillus iheyensis HTE8316
OCAR504832 ncbi Oligotropha carboxidovorans OM56
OANT439375 ncbi Ochrobactrum anthropi ATCC 491886
NSP35761 Nocardioides sp.6
NSP103690 ncbi Nostoc sp. PCC 71207
NMEN374833 ncbi Neisseria meningitidis 0534426
NMEN272831 ncbi Neisseria meningitidis FAM187
NMEN122587 ncbi Neisseria meningitidis Z24916
NMEN122586 ncbi Neisseria meningitidis MC587
NHAM323097 ncbi Nitrobacter hamburgensis X146
NGON242231 ncbi Neisseria gonorrhoeae FA 10906
NFAR247156 ncbi Nocardia farcinica IFM 101526
MVAN350058 ncbi Mycobacterium vanbaalenii PYR-16
MTUB419947 ncbi Mycobacterium tuberculosis H37Ra6
MTUB336982 ncbi Mycobacterium tuberculosis F116
MTHE264732 ncbi Moorella thermoacetica ATCC 390737
MTHE187420 ncbi Methanothermobacter thermautotrophicus Delta H6
MTBRV ncbi Mycobacterium tuberculosis H37Rv6
MTBCDC ncbi Mycobacterium tuberculosis CDC15516
MSUC221988 ncbi Mannheimia succiniciproducens MBEL55E6
MSTA339860 ncbi Methanosphaera stadtmanae DSM 30916
MSP409 Methylobacterium sp.6
MSP400668 ncbi Marinomonas sp. MWYL16
MSP266779 ncbi Chelativorans sp. BNC16
MSP189918 ncbi Mycobacterium sp. KMS6
MSP164757 ncbi Mycobacterium sp. JLS6
MSP164756 ncbi Mycobacterium sp. MCS6
MSME246196 ncbi Mycobacterium smegmatis MC2 1556
MMAR402880 ncbi Methanococcus maripaludis C56
MMAG342108 ncbi Magnetospirillum magneticum AMB-16
MLEP272631 ncbi Mycobacterium leprae TN6
MJAN243232 ncbi Methanocaldococcus jannaschii DSM 26617
MGIL350054 ncbi Mycobacterium gilvum PYR-GCK6
MCAP243233 ncbi Methylococcus capsulatus Bath6
MBOV410289 ncbi Mycobacterium bovis BCG str. Pasteur 1173P26
MBOV233413 ncbi Mycobacterium bovis AF2122/976
MAVI243243 ncbi Mycobacterium avium 1047
MAER449447 ncbi Microcystis aeruginosa NIES-8437
MAEO419665 ncbi Methanococcus aeolicus Nankai-36
MABS561007 ncbi Mycobacterium abscessus ATCC 199777
LXYL281090 ncbi Leifsonia xyli xyli CTCB076
LSPH444177 ncbi Lysinibacillus sphaericus C3-416
KPNE272620 ncbi Klebsiella pneumoniae pneumoniae MGH 785787
JSP290400 ncbi Jannaschia sp. CCS16
HMOD498761 ncbi Heliobacterium modesticaldum Ice17
HHAL349124 ncbi Halorhodospira halophila SL16
HCHE349521 ncbi Hahella chejuensis KCTC 23966
HAUR316274 ncbi Herpetosiphon aurantiacus ATCC 237796
GVIO251221 ncbi Gloeobacter violaceus PCC 74217
GURA351605 ncbi Geobacter uraniireducens Rf47
GTHE420246 ncbi Geobacillus thermodenitrificans NG80-27
GSUL243231 ncbi Geobacter sulfurreducens PCA7
GOXY290633 ncbi Gluconobacter oxydans 621H6
GMET269799 ncbi Geobacter metallireducens GS-157
GKAU235909 ncbi Geobacillus kaustophilus HTA4267
GBET391165 ncbi Granulibacter bethesdensis CGDNIH16
ESP42895 Enterobacter sp.7
EFER585054 ncbi Escherichia fergusonii ATCC 354697
ECOO157 ncbi Escherichia coli O157:H7 EDL9337
ECOL83334 Escherichia coli O157:H77
ECOL585397 ncbi Escherichia coli ED1a7
ECOL585057 ncbi Escherichia coli IAI397
ECOL585056 ncbi Escherichia coli UMN0267
ECOL585055 ncbi Escherichia coli 559897
ECOL585035 ncbi Escherichia coli S887
ECOL585034 ncbi Escherichia coli IAI17
ECOL481805 ncbi Escherichia coli ATCC 87397
ECOL469008 ncbi Escherichia coli BL21(DE3)7
ECOL439855 ncbi Escherichia coli SMS-3-57
ECOL413997 ncbi Escherichia coli B str. REL6067
ECOL409438 ncbi Escherichia coli SE117
ECOL405955 ncbi Escherichia coli APEC O17
ECOL364106 ncbi Escherichia coli UTI897
ECOL362663 ncbi Escherichia coli 5367
ECOL331111 ncbi Escherichia coli E24377A7
ECOL316407 ncbi Escherichia coli K-12 substr. W31107
ECOL199310 ncbi Escherichia coli CFT0737
ECAR218491 ncbi Pectobacterium atrosepticum SCRI10437
DVUL882 ncbi Desulfovibrio vulgaris Hildenborough6
DSP255470 ncbi Dehalococcoides sp. CBDB17
DSP216389 ncbi Dehalococcoides sp. BAV17
DSHI398580 ncbi Dinoroseobacter shibae DFL 127
DRED349161 ncbi Desulfotomaculum reducens MI-17
DPSY177439 ncbi Desulfotalea psychrophila LSv547
DOLE96561 ncbi Desulfococcus oleovorans Hxd37
DHAF138119 ncbi Desulfitobacterium hafniense Y517
DETH243164 ncbi Dehalococcoides ethenogenes 1957
DDES207559 ncbi Desulfovibrio desulfuricans desulfuricans G206
CVIO243365 ncbi Chromobacterium violaceum ATCC 124726
CSP78 Caulobacter sp.6
CSP501479 Citreicella sp. SE456
CPHY357809 ncbi Clostridium phytofermentans ISDg6
CNOV386415 ncbi Clostridium novyi NT7
CMIC443906 ncbi Clavibacter michiganensis michiganensis NCPPB 3827
CMIC31964 ncbi Clavibacter michiganensis sepedonicus6
CKLU431943 ncbi Clostridium kluyveri DSM 5556
CHYD246194 ncbi Carboxydothermus hydrogenoformans Z-29017
CDES477974 ncbi Candidatus Desulforudis audaxviator MP104C7
CBEI290402 ncbi Clostridium beijerinckii NCIMB 80527
CACE272562 ncbi Clostridium acetobutylicum ATCC 8247
BWEI315730 ncbi Bacillus weihenstephanensis KBAB47
BTHU412694 ncbi Bacillus thuringiensis Al Hakam6
BTHU281309 ncbi Bacillus thuringiensis serovar konkukian str. 97-276
BSUB ncbi Bacillus subtilis subtilis 1687
BSP376 Bradyrhizobium sp.6
BSP107806 ncbi Buchnera aphidicola APS (Acyrthosiphon pisum)6
BPER257313 ncbi Bordetella pertussis Tohama I6
BPAR257311 ncbi Bordetella parapertussis 128226
BLIC279010 ncbi Bacillus licheniformis ATCC 145806
BHAL272558 ncbi Bacillus halodurans C-1257
BCLA66692 ncbi Bacillus clausii KSM-K167
BCER405917 Bacillus cereus W6
BCER315749 ncbi Bacillus cytotoxicus NVH 391-987
BCER288681 ncbi Bacillus cereus E33L6
BCER226900 ncbi Bacillus cereus ATCC 145796
BBRO257310 ncbi Bordetella bronchiseptica RB506
BAPH198804 ncbi Buchnera aphidicola Sg (Schizaphis graminum)6
BAMY326423 ncbi Bacillus amyloliquefaciens FZB427
AVAR240292 ncbi Anabaena variabilis ATCC 294137
ASP62977 ncbi Acinetobacter sp. ADP16
ASAL382245 ncbi Aeromonas salmonicida salmonicida A4496
ANAE240017 Actinomyces oris MG16
AMET293826 ncbi Alkaliphilus metalliredigens QYMF7
AMAR329726 ncbi Acaryochloris marina MBIC110177
AHYD196024 Aeromonas hydrophila dhakensis6
AFER243159 ncbi Acidithiobacillus ferrooxidans ATCC 232706
AEHR187272 ncbi Alkalilimnicola ehrlichii MLHE-17
ADEH290397 ncbi Anaeromyxobacter dehalogenans 2CP-C7
ACEL351607 ncbi Acidothermus cellulolyticus 11B7
ACAU438753 ncbi Azorhizobium caulinodans ORS 5717
ABOR393595 ncbi Alcanivorax borkumensis SK26
ABAU360910 ncbi Bordetella avium 197N6
ABAC204669 ncbi Candidatus Koribacter versatilis Ellin3457
AAUR290340 ncbi Arthrobacter aurescens TC16
AAEO224324 ncbi Aquifex aeolicus VF56


Names of the homologs of the genes in the group in each of these orgs
  G7596   G6944   EG10068   EG10067   EG10066   EG10065   EG10064   
YPSE349747 YPSIP31758_3947YPSIP31758_2408YPSIP31758_3549YPSIP31758_3947YPSIP31758_0127YPSIP31758_0128
YPSE273123 YPTB3731YPTB1579YPTB0526YPTB3731YPTB0110YPTB0111
YPES386656 YPDSF_1161YPDSF_1406YPDSF_3256YPDSF_0098YPDSF_3537YPDSF_3536
YPES377628 YPN_3894YPN_2410YPN_0642YPN_3894YPN_0042YPN_0043
YPES360102 YPA_3299YPA_0865YPA_2948YPA_3299YPA_0097YPA_0098
YPES349746 YPANGOLA_A3704YPANGOLA_A1695YPANGOLA_A4042YPANGOLA_A3704YPANGOLA_A3898YPANGOLA_A3897
YPES214092 YPO1962YPO1570YPO3446YPO1962YPO3927YPO3925
YPES187410 Y3954Y2595Y0740Y3954Y0310Y0311
YENT393305 YE3957YE2680YE0494YE3957YE0119YE0120
XAUT78245 XAUT_1218XAUT_1218XAUT_2013XAUT_1218XAUT_4756XAUT_0013
VVUL216895 VV1_1313VV1_1373VV1_1466VV1_1313VV1_1371VV1_1372
VVUL196600 VV3054VV3000VV2919VV3054VV3002VV3001
VPAR223926 VP2797VP2757VP2653VP2797VP2759VP2758
VFIS312309 VF2284VF2304VF0407VF2284VF2306VF2305
VCHO345073 VC0395_A2195VC0395_A2218VC0395_A2091VC0395_A2195VC0395_A2220VC0395_A2219
VCHO VC2618VC2642VC2508VC2618VC2644VC2643
TTUR377629 TERTU_0734TERTU_0734TERTU_2998TERTU_0734TERTU_3064TERTU_0187
TTHE300852 TTHA0909TTHA0284TTHA1199TTHA1755TTHA1904TTHA1950
TTHE262724 TT_C0553TT_C1701TT_C0838TT_C1393TT_C1542TT_C1586
TTEN273068 TTE2339TTE2495TTE2494TTE0532TTE2495TTE2498TTE2496
TSP28240 TRQ2_1040TRQ2_1040TRQ2_1045TRQ2_1719TRQ2_1040TRQ2_1043TRQ2_1041
TSP1755 TETH514_0819TETH514_0660TETH514_0663TETH514_0484TETH514_0660TETH514_0657TETH514_0659
TPSE340099 TETH39_0327TETH39_0226TETH39_0229TETH39_1748TETH39_0226TETH39_0223TETH39_0225
TPET390874 TPET_1072TPET_1072TPET_1067TPET_1646TPET_1072TPET_1069TPET_1071
TMAR243274 TM_1785TM_1785TM_1780TM_1097TM_1785TM_1782TM_1784
TLET416591 TLET_0368TLET_0368TLET_0363TLET_1729TLET_0368TLET_0365TLET_0367
TFUS269800 TFU_2054TFU_2052TFU_1992TFU_2054TFU_2057TFU_2055
TERY203124 TERY_2649TERY_2649TERY_0882TERY_1323TERY_2649TERY_2788TERY_1153
TELO197221 TLR1328TLR1328TLR0712TLL1106TLR1328TLL2219TLL1408
TCRU317025 TCR_0533TCR_0533TCR_0914TCR_0532TCR_0533TCR_0348TCR_1899
SWOL335541 SWOL_0440SWOL_2288SWOL_2287SWOL_2288SWOL_2291SWOL_2289
STYP99287 STM3218STM1303STM3290STM4469STM1303STM4121STM4122
STHE292459 STH768STH2881STH2874STH3019STH2881STH2892STH2882
SSP94122 SHEWANA3_0610SHEWANA3_3902SHEWANA3_3903SHEWANA3_0610SHEWANA3_3905SHEWANA3_3904
SSP644076 SCH4B_3982SCH4B_3982SCH4B_3207SCH4B_3983SCH4B_3982SCH4B_4595SCH4B_1087
SSP321332 CYB_1419CYB_1419CYB_1752CYB_0821CYB_1419CYB_0289CYB_1687
SSP321327 CYA_1537CYA_1537CYA_2817CYA_1537CYA_0652CYA_0310
SSP292414 TM1040_0665TM1040_0665TM1040_2883TM1040_0666TM1040_0665TM1040_1123TM1040_0301
SSP1148 SLR1022SLR1022SLR0585SLL0902SLR1022SLL0080SLR1898
SSON300269 SSO_3211SSO_1409SSO_3320SSO_4436SSO_1409SSO_4131SSO_4132
SSAP342451 SSP0220SSP1814SSP0232SSP0220SSP0221SSP0223
SPRO399741 SPRO_2844SPRO_4779SPRO_0554SPRO_2844SPRO_4781SPRO_4780
SONE211586 SO_0617SO_0278SO_0277SO_0617SO_0275SO_0276
SMEL266834 SMC02138SMC02138SMC03826SMA0695SMC02138SMC01726
SMED366394 SMED_0127SMED_0127SMED_3063SMED_5203SMED_0127SMED_0075
SLAC55218 SL1157_0125SL1157_0125SL1157_1102SL1157_0482SL1157_0125SL1157_3003SL1157_1615
SHIGELLA YGJGARGDARGGARGIARGDARGCARGB
SHAL458817 SHAL_3610SHAL_4090SHAL_0687SHAL_3610SHAL_4093SHAL_4092
SFUM335543 SFUM_0063SFUM_0063SFUM_0061SFUM_0063SFUM_1667SFUM_0064
SFLE373384 SFV_3114SFV_3365SFV_3202SFV_4239SFV_3365SFV_4027SFV_4028
SFLE198214 AAN44587.1AAN44841.1AAN44680.1AAN45654.1AAN44841.1AAN45465.1AAN45466.1
SERY405948 SACE_4131SACE_2917SACE_5258SACE_5259SACE_5263SACE_5260
SEPI176280 SE_0653SE_1209SE_0657SE_0103SE_1212SE_1210
SEPI176279 SERP0545SERP1089SERP0549SERP2351SERP1092SERP1090
SENT454169 SEHA_C3513SEHA_C3773SEHA_C3585SEHA_C4872SEHA_C3773SEHA_C4449SEHA_C4450
SENT321314 SCH_3165SCH_3402SCH_3231SCH_4324SCH_3402SCH_4011SCH_4012
SENT295319 SPA3086SPA3334SPA3158SPA4269SPA3334SPA3959SPA3960
SENT220341 STY3396STY4328STY3470STY4807STY4328STY3752STY3751
SENT209261 T3138T1182T3208T4503T1182T3503T3502
SELO269084 SYC0599_CSYC0599_CSYC1488_CSYC1592_CSYC0599_CSYC0123_CSYC2482_C
SDYS300267 SDY_3521SDY_3351SDY_4276SDY_3521SDY_3793SDY_3794
SCO SCO1284SCO1577SCO7036SCO5976SCO1577SCO1580SCO1578
SBOY300268 SBO_2932SBO_1342SBO_3210SBO_4188SBO_3341SBO_3977SBO_3978
SAVE227882 SAV2285SAV6766SAV801SAV2319SAV6766SAV6763SAV6765
SACI56780 SYN_02155SYN_02155SYN_02157SYN_02155SYN_00234SYN_02154
RXYL266117 RXYL_2888RXYL_2888RXYL_2882RXYL_2888RXYL_2885RXYL_2887
RSPH349102 RSPH17025_3105RSPH17025_3105RSPH17025_2650RSPH17025_3105RSPH17025_0898RSPH17025_2865
RSPH349101 RSPH17029_0718RSPH17029_0718RSPH17029_2873RSPH17029_0719RSPH17029_0718RSPH17029_1592RSPH17029_2729
RSPH272943 RSP_2008RSP_2008RSP_1212RSP_2009RSP_2008RSP_2946RSP_1068
RSP357808 ROSERS_2722ROSERS_0842ROSERS_4058ROSERS_2405ROSERS_0842ROSERS_4052ROSERS_4053
RSP101510 RHA1_RO00953RHA1_RO00953RHA1_RO00950RHA1_RO00952RHA1_RO00953RHA1_RO00956RHA1_RO00954
RRUB269796 RRU_A3466RRU_A3277RRU_A3751RRU_A3276RRU_A1147RRU_A2421RRU_A3341
RPOM246200 SPO_0962SPO_0962SPO_0018SPO_0963SPO_0962SPO_1876SPO_0526
RPAL316056 RPC_1728RPC_4916RPC_0031RPC_4916RPC_2823RPC_0814
RPAL316055 RPE_1819RPE_4884RPE_0034RPE_4884RPE_2944RPE_0647
RPAL258594 RPA3732RPA4773RPA0392RPA4773RPA2491RPA0629
REUT381666 H16_B2123H16_A3025H16_B2531H16_A3025H16_A0220H16_A0208
RDEN375451 RD1_1676RD1_1676RD1_0417RD1_1676RD1_3227RD1_1452
RCAS383372 RCAS_3460RCAS_1224RCAS_3356RCAS_3073RCAS_1224RCAS_3362
PTHE370438 PTH_1726PTH_0504PTH_0507PTH_0506PTH_0504PTH_0501PTH_0503
PSYR205918 PSYR_2358PSYR_3565PSYR_2685PSYR_3565PSYR_4569PSYR_0218
PPUT76869 PPUTGB1_3986PPUTGB1_4324PPUTGB1_0999PPUTGB1_3986PPUTGB1_0462PPUTGB1_5339
PPUT351746 PPUT_1434PPUT_1129PPUT_1037PPUT_1434PPUT_0465PPUT_5198
PPUT160488 PP_4481PP_1088PP_1000PP_4481PP_0432PP_5289
PPRO298386 PBPRA0289PBPRA0268PBPRA0475PBPRA0289PBPRA0266PBPRA0267
PMUL272843 PM0344PM0813PM0808PM0344PM1118PM1119
PMOB403833 PMOB_1698PMOB_1698PMOB_1700PMOB_0068PMOB_1698PMOB_1702PMOB_1697
PMEN399739 PMEN_2911PMEN_1394PMEN_1107PMEN_2911PMEN_3933PMEN_4380
PLUM243265 PLU3110PLU4742PLU4490PLU0394PLU4744PLU4743
PFLU220664 PFL_2461PFL_4515PFL_4853PFL_4636PFL_4515PFL_5611PFL_6055
PFLU216595 PFLU1624PFLU4758PFLU4892PFLU4758PFLU5548PFLU5987
PFLU205922 PFL_4636PFL_4285PFL_4387PFL_4285PFL_5102PFL_5543
PENT384676 PSEEN3882PSEEN1210PSEEN4429PSEEN3882PSEEN0460PSEEN5435
PCAR338963 PCAR_2083PCAR_2414PCAR_2417PCAR_2415PCAR_2414PCAR_1898PCAR_2413
PAER208964 PA0895PA3525PA5172PA0895PA0662PA5323
PAER208963 PA14_52720PA14_18740PA14_68340PA14_52720PA14_08480PA14_70280
OIHE221109 OB2287OB1078OB3129OB0460OB1075OB1077
OCAR504832 OCAR_6663OCAR_4654OCAR_4294OCAR_4654OCAR_6010OCAR_7533
OANT439375 OANT_0394OANT_0394OANT_0086OANT_4647OANT_0394OANT_1358
NSP35761 NOCA_2471NOCA_2474NOCA_2425NOCA_2471NOCA_2468NOCA_2470
NSP103690 ALR2398ALR1080ALR4798ALR4907ALR1080ALR3537ALR1245
NMEN374833 NMCC_1283NMCC_2087NMCC_1476NMCC_1283NMCC_0439NMCC_0992
NMEN272831 NMC1306NMC1306NMC2106NMC1493NMC1306NMC0434NMC1038
NMEN122587 NMA1584NMA0303NMA1762NMA1584NMA0676NMA1275
NMEN122586 NMB_1371NMB_1371NMB_2129NMB_1573NMB_1371NMB_1787NMB_1074
NHAM323097 NHAM_2676NHAM_0642NHAM_3623NHAM_0642NHAM_2314NHAM_3700
NGON242231 NGO0646NGO1961NGO1232NGO0646NGO0118NGO0844
NFAR247156 NFA19390NFA19390NFA19620NFA19390NFA19360NFA19380
MVAN350058 MVAN_3311MVAN_3311MVAN_3308MVAN_1390MVAN_3311MVAN_3314
MTUB419947 MRA_1666MRA_1666MRA_1669MRA_1667MRA_1666MRA_1663
MTUB336982 TBFG_11673TBFG_11673TBFG_11676TBFG_11674TBFG_11673TBFG_11670
MTHE264732 MOTH_1785MOTH_2287MOTH_2285MOTH_2286MOTH_2287MOTH_2290MOTH_2288
MTHE187420 MTH1337MTH1337MTH1446MTH1337MTH846MTH183
MTBRV RV1655RV1655RV1658RV1656RV1655RV1652
MTBCDC MT1693MT1693MT1696MT1694MT1693MT1690
MSUC221988 MS0782MS1479MS1073MS0782MS0235MS0236
MSTA339860 MSP_0037MSP_0037MSP_0031MSP_0037MSP_0552MSP_0550
MSP409 M446_6536M446_6536M446_6641M446_6536M446_4524M446_0868
MSP400668 MMWYL1_1109MMWYL1_1533MMWYL1_1976MMWYL1_1109MMWYL1_1483MMWYL1_0621
MSP266779 MESO_0009MESO_0009MESO_3344MESO_2240MESO_0009MESO_0380
MSP189918 MKMS_3013MKMS_3013MKMS_3010MKMS_3013MKMS_3016MKMS_3014
MSP164757 MJLS_2984MJLS_2984MJLS_2981MJLS_2984MJLS_2987MJLS_2985
MSP164756 MMCS_2969MMCS_2969MMCS_2966MMCS_2969MMCS_2972MMCS_2970
MSME246196 MSMEG_3773MSMEG_3773MSMEG_3770MSMEG_3772MSMEG_3773MSMEG_3776
MMAR402880 MMARC5_0483MMARC5_0483MMARC5_1604MMARC5_0483MMARC5_1562MMARC5_1614
MMAG342108 AMB0812AMB0812AMB1125AMB0316AMB1793AMB4358
MLEP272631 ML1409ML1409ML1412ML1410ML1409ML1406
MJAN243232 MJ_0721MJ_0721MJ_0429MJ_0881MJ_0721MJ_1096MJ_0069
MGIL350054 MFLV_3527MFLV_3527MFLV_3524MFLV_3526MFLV_3527MFLV_3530
MCAP243233 MCA_2079MCA_2079MCA_2080MCA_2079MCA_0700MCA_2781
MBOV410289 BCG_1694BCG_1694BCG_1697BCG_1695BCG_1694BCG_1691
MBOV233413 MB1683MB1683MB1686MB1684MB1683MB1680
MAVI243243 MAV_3115MAV_3115MAV_3112MAV_3114MAV_3115MAV_3118MAV_3116
MAER449447 MAE_31780MAE_15720MAE_02090MAE_54100MAE_15720MAE_19530MAE_24410
MAEO419665 MAEO_0640MAEO_0640MAEO_0622MAEO_0640MAEO_1314MAEO_0127
MABS561007 MAB_2279MAB_2339MAB_2342MAB_2340MAB_2339MAB_2336MAB_2338
LXYL281090 LXX06060LXX21970LXX06070LXX06060LXX06030LXX06050
LSPH444177 BSPH_0623BSPH_3411BSPH_4093BSPH_4192BSPH_4195BSPH_4193
KPNE272620 GKPORF_B2845GKPORF_B3084GKPORF_B2914GKPORF_B4019GKPORF_B3084GKPORF_B3590GKPORF_B3591
JSP290400 JANN_1024JANN_1024JANN_0067JANN_1024JANN_2336JANN_0633
HMOD498761 HM1_1941HM1_1431HM1_1436HM1_1435HM1_1431HM1_1428HM1_1430
HHAL349124 HHAL_0727HHAL_0727HHAL_0725HHAL_0727HHAL_0880HHAL_2296
HCHE349521 HCH_06028HCH_01947HCH_05489HCH_01947HCH_06245HCH_01027
HAUR316274 HAUR_3309HAUR_4554HAUR_4140HAUR_4137HAUR_4554HAUR_4144
GVIO251221 GLR0547GLR0547GLR2933GLL3101GLR0547GLR4010GLL3931
GURA351605 GURA_0226GURA_0226GURA_0228GURA_0227GURA_0226GURA_1051GURA_0225
GTHE420246 GTNG_0170GTNG_0673GTNG_2682GTNG_0676GTNG_0673GTNG_0670GTNG_0672
GSUL243231 GSU_0151GSU_0151GSU_0153GSU_0152GSU_0151GSU_2874GSU_0150
GOXY290633 GOX1237GOX0255GOX1236GOX1237GOX1444GOX1829
GMET269799 GMET_0204GMET_0204GMET_0206GMET_0205GMET_0204GMET_0608GMET_0203
GKAU235909 GK0793GK0793GK2757GK0796GK0793GK0790GK0792
GBET391165 GBCGDNIH1_1948GBCGDNIH1_2274GBCGDNIH1_0263GBCGDNIH1_2273GBCGDNIH1_2274GBCGDNIH1_0734
ESP42895 ENT638_3528ENT638_1696ENT638_3608ENT638_0459ENT638_3786ENT638_4028ENT638_4027
EFER585054 EFER_3025EFER_1317EFER_3150EFER_4334EFER_3332EFER_3805EFER_3804
ECOO157 YGJGCSTCARGGARGIARGDARGCARGB
ECOL83334 ECS3955ECS2454ECS4052ECS5231ECS4210ECS4887ECS4888
ECOL585397 ECED1_3741ECED1_1950ECED1_3831ECED1_5107ECED1_4023ECED1_4663ECED1_4664
ECOL585057 ECIAI39_3571ECIAI39_1306ECIAI39_3668ECIAI39_4727ECIAI39_3843ECIAI39_3031ECIAI39_3030
ECOL585056 ECUMN_3556ECUMN_2037ECUMN_3653ECUMN_4786ECUMN_3822ECUMN_4489ECUMN_4490
ECOL585055 EC55989_3487EC55989_1916EC55989_3591EC55989_4812EC55989_3765EC55989_4440EC55989_4441
ECOL585035 ECS88_3470ECS88_1800ECS88_3555ECS88_4841ECS88_3750ECS88_4413ECS88_4414
ECOL585034 ECIAI1_3220ECIAI1_1809ECIAI1_3321ECIAI1_4485ECIAI1_3498ECIAI1_4166ECIAI1_4167
ECOL481805 ECOLC_0627ECOLC_1884ECOLC_0527ECOLC_3758ECOLC_0353ECOLC_4058ECOLC_4057
ECOL469008 ECBD_0669ECBD_1897ECBD_0569ECBD_3782ECBD_0389ECBD_4066ECBD_4065
ECOL439855 ECSMS35_3367ECSMS35_1443ECSMS35_3468ECSMS35_4734ECSMS35_1443ECSMS35_4405ECSMS35_4406
ECOL413997 ECB_02942ECB_01717ECB_03038ECB_04120ECB_03210ECB_03843ECB_03844
ECOL409438 ECSE_3354ECSE_1918ECSE_3457ECSE_4560ECSE_3621ECSE_4251ECSE_4252
ECOL405955 APECO1_3343APECO1_817APECO1_3259APECO1_2140APECO1_3096APECO1_2509APECO1_2508
ECOL364106 UTI89_C3511UTI89_C1943UTI89_C3604UTI89_C4860UTI89_C3862UTI89_C4549UTI89_C4550
ECOL362663 ECP_3163ECP_1694ECP_3259ECP_4498ECP_3450ECP_4171ECP_4172
ECOL331111 ECE24377A_3540ECE24377A_1970ECE24377A_3657ECE24377A_4825ECE24377A_3829ECE24377A_4497ECE24377A_4498
ECOL316407 ECK3063:JW5510:B3073ECK1746:JW1737:B1748ECK3161:JW3140:B3172ECK0274:JW0266:B0273ECK3347:JW3322:B3359ECK3949:JW3930:B3958ECK3950:JW5553:B3959
ECOL199310 C3828C2148C3929C5353C4134C4917C4918
ECAR218491 ECA1543ECA4065ECA0104ECA0384ECA4065ECA0192ECA0193
DVUL882 DVU_2347DVU_1095DVU_1096DVU_2347DVU_0492DVU_1466
DSP255470 CBDBA1181CBDBA1181CBDBA1183CBDBA1353CBDBA1181CBDBA1722CBDBA1180
DSP216389 DEHABAV1_1069DEHABAV1_1069DEHABAV1_1071DEHABAV1_1203DEHABAV1_1069DEHABAV1_1371DEHABAV1_1068
DSHI398580 DSHI_0798DSHI_0798DSHI_3472DSHI_0433DSHI_0798DSHI_1759DSHI_0324
DRED349161 DRED_2058DRED_0274DRED_0277DRED_0276DRED_0274DRED_0271DRED_0273
DPSY177439 DP0438DP0438DP0436DP0437DP0438DP1325DP0439
DOLE96561 DOLE_2493DOLE_2493DOLE_2491DOLE_2492DOLE_2493DOLE_2034DOLE_2494
DHAF138119 DSY0763DSY0763DSY0785DSY0784DSY0763DSY0760DSY0762
DETH243164 DET_1258DET_1258DET_1260DET_1394DET_1258DET_1626DET_1257
DDES207559 DDE_1426DDE_2531DDE_2532DDE_1426DDE_3455DDE_2015
CVIO243365 CV_1496CV_1994CV_3781CV_1496CV_3695CV_3921
CSP78 CAUL_1231CAUL_1231CAUL_4763CAUL_2960CAUL_1231CAUL_4558
CSP501479 CSE45_0599CSE45_0599CSE45_3406CSE45_0599CSE45_2661CSE45_0217
CPHY357809 CPHY_1951CPHY_1931CPHY_0421CPHY_1951CPHY_1948CPHY_1950
CNOV386415 NT01CX_2381NT01CX_2381NT01CX_0135NT01CX_0745NT01CX_2381NT01CX_2379NT01CX_2380
CMIC443906 CMM_1998CMM_1998CMM_1996CMM_1997CMM_1998CMM_2001CMM_1999
CMIC31964 CMS1234CMS1234CMS1235CMS1234CMS1231CMS1233
CKLU431943 CKL_1556CKL_0981CKL_2376CKL_1556CKL_1553CKL_1555
CHYD246194 CHY_1436CHY_2262CHY_2260CHY_2261CHY_2262CHY_2265CHY_2263
CDES477974 DAUD_0653DAUD_0342DAUD_0344DAUD_0343DAUD_0342DAUD_0339DAUD_0341
CBEI290402 CBEI_4934CBEI_4520CBEI_4515CBEI_2446CBEI_4520CBEI_4517CBEI_4519
CACE272562 CAC2388CAC2388CAC0973CAC0316CAC2388CAC2390CAC2389
BWEI315730 BCERKBAB4_1277BCERKBAB4_3962BCERKBAB4_4460BCERKBAB4_3961BCERKBAB4_3962BCERKBAB4_3965BCERKBAB4_3963
BTHU412694 BALH_3744BALH_3744BALH_0363BALH_3744BALH_3747BALH_3745
BTHU281309 BT9727_3876BT9727_3876BT9727_0342BT9727_3876BT9727_3879BT9727_3877
BSUB BSU40340BSU11220BSU29450BSU11250BSU11220BSU11190BSU11210
BSP376 BRADO2635BRADO6779BRADO0243BRADO6779BRADO6484BRADO0779
BSP107806 BU534BU050BU368BU534BU048BU049
BPER257313 BP0539BP0451BP3537BP0451BP2960BP0383
BPAR257311 BPP0748BPP4365BPP2541BPP4365BPP3882BPP4047
BLIC279010 BL01737BL00417BL01914BL03244BL03241BL03243
BHAL272558 BH2897BH2897BH3187BH2894BH2897BH2900BH2898
BCLA66692 ABC0017ABC2555ABC2737ABC2552ABC2555ABC2558ABC2556
BCER405917 BCE_4200BCE_4200BCE_0473BCE_4200BCE_4203BCE_4201
BCER315749 BCER98_2826BCER98_2826BCER98_3306BCER98_0349BCER98_2826BCER98_2829BCER98_2827
BCER288681 BCE33L3884BCE33L3884BCE33L3883BCE33L3884BCE33L3887BCE33L3885
BCER226900 BC_4127BC_4127BC_4630BC_0407BC_4127BC_4128
BBRO257310 BB0834BB4951BB1986BB4951BB4355BB4520
BAPH198804 BUSG515BUSG047BUSG356BUSG515BUSG045BUSG046
BAMY326423 RBAM_037250RBAM_011220RBAM_026380RBAM_011250RBAM_011220RBAM_011190RBAM_011210
AVAR240292 AVA_0214AVA_3730AVA_2068AVA_2197AVA_3730AVA_3516AVA_0554
ASP62977 ACIAD1284ACIAD1151ACIAD1366ACIAD1284ACIAD1360ACIAD0903
ASAL382245 ASA_1134ASA_0581ASA_0224ASA_1134ASA_0578ASA_0579
ANAE240017 ANA_1027ANA_1025ANA_0794ANA_1027ANA_1031ANA_1028
AMET293826 AMET_4317AMET_3380AMET_0653AMET_4608AMET_3380AMET_3383AMET_3381
AMAR329726 AM1_1461AM1_1461AM1_4234AM1_5620AM1_1461AM1_0609AM1_4108
AHYD196024 AHA_3180AHA_0596AHA_4091AHA_3180AHA_0593AHA_0594
AFER243159 AFE_2631AFE_2631AFE_2633AFE_2632AFE_0037AFE_2772
AEHR187272 MLG_1102MLG_1102MLG_0601MLG_1101MLG_1102MLG_0434MLG_0084
ADEH290397 ADEH_2692ADEH_2692ADEH_3085ADEH_2691ADEH_2692ADEH_0588ADEH_0587
ACEL351607 ACEL_0230ACEL_1260ACEL_1257ACEL_1259ACEL_1260ACEL_1263ACEL_1261
ACAU438753 AZC_4028AZC_4028AZC_0745AZC_4027AZC_4028AZC_2511AZC_0701
ABOR393595 ABO_0719ABO_0725ABO_0718ABO_0719ABO_0359ABO_0210
ABAU360910 BAV2111BAV3374BAV2113BAV3374BAV2968BAV3167
ABAC204669 ACID345_1532ACID345_0626ACID345_4158ACID345_1819ACID345_0626ACID345_4161ACID345_4160
AAUR290340 AAUR_1634AAUR_1634AAUR_1637AAUR_1635AAUR_1634AAUR_1631
AAEO224324 AQ_023AQ_023AQ_1140AQ_023AQ_1879AQ_2068


Organism features enriched in list (features available for 217 out of the 231 orgs in the list)
Feature    Pvalue       Num occurrences in list  Total num occurrences  
Arrangment:Chains 0.00061772192
Arrangment:Filaments 0.0061800810
Disease:Bubonic_plague 0.002545066
Disease:Dysentery 0.002545066
Disease:Gastroenteritis 0.00051511113
Endospores:No 0.000152659211
Endospores:Yes 0.00019153253
GC_Content_Range4:0-40 1.033e-2029213
GC_Content_Range4:40-60 2.376e-7112224
GC_Content_Range4:60-100 7.111e-676145
GC_Content_Range7:0-30 0.0000896647
GC_Content_Range7:30-40 9.276e-1523166
GC_Content_Range7:50-60 8.606e-864107
GC_Content_Range7:60-70 0.000103768134
Genome_Size_Range5:0-2 1.017e-2013155
Genome_Size_Range5:2-4 0.002438959197
Genome_Size_Range5:4-6 1.899e-20119184
Genome_Size_Range5:6-10 0.00388522647
Genome_Size_Range9:0-1 0.0003400227
Genome_Size_Range9:1-2 2.362e-1611128
Genome_Size_Range9:2-3 0.003824533120
Genome_Size_Range9:4-5 1.067e-106496
Genome_Size_Range9:5-6 1.121e-75588
Genome_Size_Range9:6-8 0.00882642138
Gram_Stain:Gram_Neg 0.0078365136333
Habitat:Host-associated 5.709e-750206
Habitat:Multiple 0.000342784178
Habitat:Terrestrial 0.00802391831
Motility:No 0.000237439151
Motility:Yes 8.916e-6124267
Shape:Coccus 0.00003961582
Shape:Rod 1.139e-9163347
Shape:Spiral 0.0022191534
Temp._range:Thermophilic 0.00673602035



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ORGANISMS CONTAINING AT MOST 1 GENES FROM THE GROUP:

Total number of orgs: 123
Effective number of orgs (counting one per cluster within 468 clusters): 85

Organism list
Homologs in each organism in the list
Features enriched in organism list


Follow (ncbi) link, when present, to find the set of organism features for each organism
Org ID  Org Name  # genes in group found in org  
UURE95667 Ureaplasma urealyticum serovar 130
UURE95664 Ureaplasma urealyticum serovar 100
UPAR505682 ncbi Ureaplasma parvum serovar 3 str. ATCC 278150
TWHI218496 ncbi Tropheryma whipplei TW08/270
TWHI203267 ncbi Tropheryma whipplei Twist0
TVOL273116 ncbi Thermoplasma volcanium GSS11
TPAL243276 ncbi Treponema pallidum pallidum Nichols0
TDEN243275 ncbi Treponema denticola ATCC 354051
TACI273075 ncbi Thermoplasma acidophilum DSM 17281
SPYO370554 ncbi Streptococcus pyogenes MGAS107501
SPYO370553 ncbi Streptococcus pyogenes MGAS20961
SPYO370552 ncbi Streptococcus pyogenes MGAS102701
SPYO370551 ncbi Streptococcus pyogenes MGAS94291
SPYO319701 ncbi Streptococcus pyogenes MGAS61801
SPYO293653 ncbi Streptococcus pyogenes MGAS50051
SPYO286636 ncbi Streptococcus pyogenes MGAS103941
SPYO198466 ncbi Streptococcus pyogenes MGAS3151
SPYO193567 ncbi Streptococcus pyogenes SSI-11
SPYO186103 ncbi Streptococcus pyogenes MGAS82321
SPYO160490 ncbi Streptococcus pyogenes M1 GAS1
SPNE488221 ncbi Streptococcus pneumoniae 705851
SPNE487214 ncbi Streptococcus pneumoniae Hungary19A-61
SPNE487213 ncbi Streptococcus pneumoniae Taiwan19F-141
SPNE171101 ncbi Streptococcus pneumoniae R61
SPNE170187 ncbi Streptococcus pneumoniae G541
SPNE1313 Streptococcus pneumoniae1
SACI330779 ncbi Sulfolobus acidocaldarius DSM 6391
RTYP257363 ncbi Rickettsia typhi Wilmington0
RRIC452659 ncbi Rickettsia rickettsii Iowa0
RRIC392021 ncbi Rickettsia rickettsii Sheila Smith0
RPRO272947 ncbi Rickettsia prowazekii Madrid E0
RMAS416276 ncbi Rickettsia massiliae MTU50
RFEL315456 ncbi Rickettsia felis URRWXCal20
RCON272944 ncbi Rickettsia conorii Malish 70
RCAN293613 ncbi Rickettsia canadensis McKiel0
RBEL391896 ncbi Rickettsia bellii OSU 85-3890
RBEL336407 ncbi Rickettsia bellii RML369-C0
RAKA293614 ncbi Rickettsia akari Hartford0
PTOR263820 ncbi Picrophilus torridus DSM 97901
PPEN278197 ncbi Pediococcus pentosaceus ATCC 257451
PINT246198 Prevotella intermedia 170
PGIN242619 ncbi Porphyromonas gingivalis W831
PAST100379 Onion yellows phytoplasma0
OTSU357244 ncbi Orientia tsutsugamushi Boryong0
NSEN222891 ncbi Neorickettsia sennetsu Miyayama0
MSYN262723 ncbi Mycoplasma synoviae 530
MPUL272635 ncbi Mycoplasma pulmonis UAB CTIP0
MPNE272634 ncbi Mycoplasma pneumoniae M1291
MPEN272633 ncbi Mycoplasma penetrans HF-21
MMYC272632 ncbi Mycoplasma mycoides mycoides SC str. PG10
MMOB267748 ncbi Mycoplasma mobile 163K0
MHYO295358 ncbi Mycoplasma hyopneumoniae 2320
MHYO262722 ncbi Mycoplasma hyopneumoniae 74480
MHYO262719 ncbi Mycoplasma hyopneumoniae J0
MGEN243273 ncbi Mycoplasma genitalium G370
MFLO265311 ncbi Mesoplasma florum L10
MCAP340047 ncbi Mycoplasma capricolum capricolum ATCC 273431
MART243272 ncbi Mycoplasma arthritidis 158L3-11
LSAK314315 ncbi Lactobacillus sakei sakei 23K1
LREU557436 ncbi Lactobacillus reuteri DSM 200161
LJOH257314 ncbi Lactobacillus johnsonii NCC 5330
LHEL405566 ncbi Lactobacillus helveticus DPC 45710
LGAS324831 ncbi Lactobacillus gasseri ATCC 333230
LDEL390333 ncbi Lactobacillus delbrueckii bulgaricus ATCC 118420
LDEL321956 ncbi Lactobacillus delbrueckii bulgaricus ATCC BAA-3650
LCAS321967 ncbi Lactobacillus casei ATCC 3341
LBRE387344 ncbi Lactobacillus brevis ATCC 3671
LACI272621 ncbi Lactobacillus acidophilus NCFM0
HSP64091 ncbi Halobacterium sp. NRC-10
HSOM228400 ncbi Haemophilus somnus 23361
HSOM205914 ncbi Haemophilus somnus 129PT1
HSAL478009 ncbi Halobacterium salinarum R10
HPYL85963 ncbi Helicobacter pylori J990
HPYL357544 ncbi Helicobacter pylori HPAG10
HPY ncbi Helicobacter pylori 266950
HMAR272569 ncbi Haloarcula marismortui ATCC 430491
HINF374930 ncbi Haemophilus influenzae PittEE1
HBUT415426 ncbi Hyperthermus butylicus DSM 54561
HACI382638 ncbi Helicobacter acinonychis Sheeba0
FTUL458234 ncbi Francisella tularensis holarctica FTNF002-000
FTUL418136 ncbi Francisella tularensis tularensis WY96-34180
FTUL401614 ncbi Francisella novicida U1120
FTUL393115 ncbi Francisella tularensis tularensis FSC1980
FTUL393011 ncbi Francisella tularensis holarctica OSU180
FTUL351581 Francisella tularensis holarctica FSC2000
FRANT ncbi Francisella tularensis tularensis SCHU S40
FNUC190304 ncbi Fusobacterium nucleatum nucleatum ATCC 255860
FNOD381764 ncbi Fervidobacterium nodosum Rt17-B11
FMAG334413 ncbi Finegoldia magna ATCC 293281
EFAE226185 ncbi Enterococcus faecalis V5831
DNOD246195 ncbi Dichelobacter nodosus VCS1703A1
CTRA471473 ncbi Chlamydia trachomatis L2b/UCH-1/proctitis0
CTRA471472 ncbi Chlamydia trachomatis 434/Bu0
CTET212717 ncbi Clostridium tetani E881
CSUL444179 ncbi Candidatus Sulcia muelleri GWSS1
CPRO264201 ncbi Candidatus Protochlamydia amoebophila UWE250
CPNE182082 ncbi Chlamydophila pneumoniae TW-1830
CPNE138677 ncbi Chlamydophila pneumoniae J1380
CPNE115713 ncbi Chlamydophila pneumoniae CWL0290
CPNE115711 ncbi Chlamydophila pneumoniae AR390
CPER289380 ncbi Clostridium perfringens SM1011
CMUR243161 ncbi Chlamydia muridarum Nigg0
CFEL264202 ncbi Chlamydophila felis Fe/C-560
CCAV227941 ncbi Chlamydophila caviae GPIC0
CBUR434922 ncbi Coxiella burnetii Dugway 5J108-1110
CBUR360115 ncbi Coxiella burnetii RSA 3310
CBUR227377 ncbi Coxiella burnetii RSA 4930
CBLO291272 ncbi Candidatus Blochmannia pennsylvanicus BPEN1
CBLO203907 ncbi Candidatus Blochmannia floridanus1
CABO218497 ncbi Chlamydophila abortus S26/30
BXEN266265 ncbi Burkholderia xenovorans LB4001
BTUR314724 ncbi Borrelia turicatae 91E1351
BHER314723 ncbi Borrelia hermsii DAH1
BGAR290434 ncbi Borrelia garinii PBi1
BCIC186490 Candidatus Baumannia cicadellinicola0
BBUR224326 ncbi Borrelia burgdorferi B311
BBAC264462 ncbi Bdellovibrio bacteriovorus HD1000
BAFZ390236 ncbi Borrelia afzelii PKo1
AYEL322098 ncbi Aster yellows witches-broom phytoplasma AYWB0
AURANTIMONAS Aurantimonas manganoxydans SI85-9A10
AORE350688 ncbi Alkaliphilus oremlandii OhILAs1
AMAR234826 ncbi Anaplasma marginale St. Maries1
ALAI441768 ncbi Acholeplasma laidlawii PG-8A0


Names of the homologs of the genes in the group in each of these orgs
  G7596   G6944   EG10068   EG10067   EG10066   EG10065   EG10064   
UURE95667
UURE95664
UPAR505682
TWHI218496
TWHI203267
TVOL273116 TVN0272
TPAL243276
TDEN243275 TDE_0929
TACI273075 TA1330
SPYO370554 MGAS10750_SPY1380
SPYO370553 MGAS2096_SPY1292
SPYO370552 MGAS10270_SPY1288
SPYO370551 MGAS9429_SPY1267
SPYO319701 M28_SPY1211
SPYO293653 M5005_SPY1273
SPYO286636 M6_SPY1294
SPYO198466 SPYM3_1194
SPYO193567 SPS0668
SPYO186103 SPYM18_1562
SPYO160490 SPY1544
SPNE488221 SP70585_2276
SPNE487214 SPH_2341
SPNE487213 SPT_2161
SPNE171101 SPR1957
SPNE170187 SPN16014
SPNE1313 SPJ_2174
SACI330779 SACI_0750
RTYP257363
RRIC452659
RRIC392021
RPRO272947
RMAS416276
RFEL315456
RCON272944
RCAN293613
RBEL391896
RBEL336407
RAKA293614
PTOR263820 PTO1472
PPEN278197 PEPE_1631
PINT246198
PGIN242619 PG_1271
PAST100379
OTSU357244
NSEN222891
MSYN262723
MPUL272635
MPNE272634 MPN306
MPEN272633 MYPE6090
MMYC272632
MMOB267748
MHYO295358
MHYO262722
MHYO262719
MGEN243273
MFLO265311
MCAP340047 MCAP_0090
MART243272 MART0102
LSAK314315 LSA0371
LREU557436 LREU_0425
LJOH257314
LHEL405566
LGAS324831
LDEL390333
LDEL321956
LCAS321967 LSEI_2811
LBRE387344 LVIS_2026
LACI272621
HSP64091
HSOM228400 HSM_0253
HSOM205914 HS_1362
HSAL478009
HPYL85963
HPYL357544
HPY
HMAR272569 RRNAC2678
HINF374930 CGSHIEE_03415
HBUT415426 HBUT_1203
HACI382638
FTUL458234
FTUL418136
FTUL401614
FTUL393115
FTUL393011
FTUL351581
FRANT
FNUC190304
FNOD381764 FNOD_0704
FMAG334413 FMG_0456
EFAE226185 EF_0105
DNOD246195 DNO_1074
CTRA471473
CTRA471472
CTET212717 CTC_00561
CSUL444179 SMGWSS_110
CPRO264201
CPNE182082
CPNE138677
CPNE115713
CPNE115711
CPER289380 CPR_0158
CMUR243161
CFEL264202
CCAV227941
CBUR434922
CBUR360115
CBUR227377
CBLO291272 BPEN_032
CBLO203907 BFL032
CABO218497
BXEN266265 BXE_C0747
BTUR314724 BT0842
BHER314723 BH0842
BGAR290434 BG0869
BCIC186490
BBUR224326 BB_0842
BBAC264462
BAFZ390236 BAPKO_0897
AYEL322098
AURANTIMONAS
AORE350688 CLOS_2419
AMAR234826 AM326
ALAI441768


Organism features enriched in list (features available for 115 out of the 123 orgs in the list)
Feature    Pvalue       Num occurrences in list  Total num occurrences  
Arrangment:Pairs 3.957e-75112
Disease:None 0.0008992358
Disease:Pharyngitis 1.875e-688
Disease:Rocky_Mountain_Spotted_Fever 0.007514733
Disease:Tularemia 0.000278255
Disease:Wide_range_of_infections 1.181e-81111
Disease:bronchitis_and_pneumonitis 1.875e-688
Endospores:No 0.004343853211
Endospores:Yes 0.0004893253
GC_Content_Range4:0-40 6.839e-2186213
GC_Content_Range4:40-60 0.000012425224
GC_Content_Range4:60-100 1.655e-114145
GC_Content_Range7:0-30 6.828e-82547
GC_Content_Range7:30-40 2.710e-1061166
GC_Content_Range7:50-60 2.356e-83107
GC_Content_Range7:60-70 2.849e-104134
Genome_Size_Range5:0-2 1.415e-3788155
Genome_Size_Range5:2-4 0.000712125197
Genome_Size_Range5:4-6 1.709e-201184
Genome_Size_Range5:6-10 0.0002583147
Genome_Size_Range9:0-1 7.648e-142327
Genome_Size_Range9:1-2 1.693e-2065128
Genome_Size_Range9:3-4 0.0001069477
Genome_Size_Range9:4-5 2.275e-9196
Habitat:Aquatic 0.0000316591
Habitat:Host-associated 1.715e-1172206
Motility:Yes 2.033e-925267
Optimal_temp.:30-35 0.000300667
Optimal_temp.:37 0.000139035106
Oxygen_Req:Anaerobic 0.008459612102
Oxygen_Req:Facultative 0.002429652201
Pathogenic_in:Human 2.105e-868213
Pathogenic_in:No 1.058e-721226
Salinity:Non-halophilic 0.000331234106
Shape:Pleomorphic 0.008259658
Shape:Rod 0.000101451347
Shape:Sphere 2.193e-81519



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ORGANISMS ENRICHED FOR GROUP:

Total number of orgs: 26
Effective number of orgs (counting one per cluster within 468 clusters): 24

Organism list
Homologs in each organism in the list
Features enriched in organism list


Follow (ncbi) link, when present, to find the set of organism features for each organism
Org ID  Org Name    Pvalue       # genes in tgt genome found in org  # genes in group found in org  
MJAN243232 ncbi Methanocaldococcus jannaschii DSM 2661 7.786e-63717
DETH243164 ncbi Dehalococcoides ethenogenes 195 0.00016865747
MSTA339860 ncbi Methanosphaera stadtmanae DSM 3091 0.00017322996
DSP216389 ncbi Dehalococcoides sp. BAV1 0.00019275857
DSP255470 ncbi Dehalococcoides sp. CBDB1 0.00020705917
MAEO419665 ncbi Methanococcus aeolicus Nankai-3 0.00040123446
MTHE187420 ncbi Methanothermobacter thermautotrophicus Delta H 0.00076263836
MMAR402880 ncbi Methanococcus maripaludis C5 0.00126714176
TLET416591 ncbi Thermotoga lettingae TMO 0.00172517997
PMOB403833 ncbi Petrotoga mobilis SJ95 0.00175578017
TPET390874 ncbi Thermotoga petrophila RKU-1 0.00233158347
TMAR243274 ncbi Thermotoga maritima MSB8 0.00247258417
MLEP272631 ncbi Mycobacterium leprae TN 0.00271854746
ACEL351607 ncbi Acidothermus cellulolyticus 11B 0.00311218697
TSP28240 Thermotoga sp. 0.00313748707
TELO197221 ncbi Thermosynechococcus elongatus BP-1 0.00324018747
CMIC443906 ncbi Clavibacter michiganensis michiganensis NCPPB 382 0.00430229107
MAVI243243 ncbi Mycobacterium avium 104 0.00540279407
SELO269084 ncbi Synechococcus elongatus PCC 6301 0.00548409427
TERY203124 ncbi Trichodesmium erythraeum IMS101 0.00569179477
SSP1148 ncbi Synechocystis sp. PCC 6803 0.00599389547
SSP321332 ncbi Synechococcus sp. JA-2-3Ba(2-13) 0.00617259587
CDES477974 ncbi Candidatus Desulforudis audaxviator MP104C 0.00630959617
MKAN190192 ncbi Methanopyrus kandleri AV19 0.00653422905
MAER449447 ncbi Microcystis aeruginosa NIES-843 0.00734379827
MABS561007 ncbi Mycobacterium abscessus ATCC 19977 0.009390810177


Names of the homologs of the genes in the group in each of these orgs
  G7596   G6944   EG10068   EG10067   EG10066   EG10065   EG10064   
MJAN243232 MJ_0721MJ_0721MJ_0429MJ_0881MJ_0721MJ_1096MJ_0069
DETH243164 DET_1258DET_1258DET_1260DET_1394DET_1258DET_1626DET_1257
MSTA339860 MSP_0037MSP_0037MSP_0031MSP_0037MSP_0552MSP_0550
DSP216389 DEHABAV1_1069DEHABAV1_1069DEHABAV1_1071DEHABAV1_1203DEHABAV1_1069DEHABAV1_1371DEHABAV1_1068
DSP255470 CBDBA1181CBDBA1181CBDBA1183CBDBA1353CBDBA1181CBDBA1722CBDBA1180
MAEO419665 MAEO_0640MAEO_0640MAEO_0622MAEO_0640MAEO_1314MAEO_0127
MTHE187420 MTH1337MTH1337MTH1446MTH1337MTH846MTH183
MMAR402880 MMARC5_0483MMARC5_0483MMARC5_1604MMARC5_0483MMARC5_1562MMARC5_1614
TLET416591 TLET_0368TLET_0368TLET_0363TLET_1729TLET_0368TLET_0365TLET_0367
PMOB403833 PMOB_1698PMOB_1698PMOB_1700PMOB_0068PMOB_1698PMOB_1702PMOB_1697
TPET390874 TPET_1072TPET_1072TPET_1067TPET_1646TPET_1072TPET_1069TPET_1071
TMAR243274 TM_1785TM_1785TM_1780TM_1097TM_1785TM_1782TM_1784
MLEP272631 ML1409ML1409ML1412ML1410ML1409ML1406
ACEL351607 ACEL_0230ACEL_1260ACEL_1257ACEL_1259ACEL_1260ACEL_1263ACEL_1261
TSP28240 TRQ2_1040TRQ2_1040TRQ2_1045TRQ2_1719TRQ2_1040TRQ2_1043TRQ2_1041
TELO197221 TLR1328TLR1328TLR0712TLL1106TLR1328TLL2219TLL1408
CMIC443906 CMM_1998CMM_1998CMM_1996CMM_1997CMM_1998CMM_2001CMM_1999
MAVI243243 MAV_3115MAV_3115MAV_3112MAV_3114MAV_3115MAV_3118MAV_3116
SELO269084 SYC0599_CSYC0599_CSYC1488_CSYC1592_CSYC0599_CSYC0123_CSYC2482_C
TERY203124 TERY_2649TERY_2649TERY_0882TERY_1323TERY_2649TERY_2788TERY_1153
SSP1148 SLR1022SLR1022SLR0585SLL0902SLR1022SLL0080SLR1898
SSP321332 CYB_1419CYB_1419CYB_1752CYB_0821CYB_1419CYB_0289CYB_1687
CDES477974 DAUD_0653DAUD_0342DAUD_0344DAUD_0343DAUD_0342DAUD_0339DAUD_0341
MKAN190192 MK1606MK1606MK1606MK1077MK1631
MAER449447 MAE_31780MAE_15720MAE_02090MAE_54100MAE_15720MAE_19530MAE_24410
MABS561007 MAB_2279MAB_2339MAB_2342MAB_2340MAB_2339MAB_2336MAB_2338


Organism features enriched in list (features available for 25 out of the 26 orgs in the list)
Feature    Pvalue       Num occurrences in list  Total num occurrences  
Arrangment:Aggregates 0.004657839
Endospores:No 0.007848315211
Genome_Size_Range9:1-2 0.007012111128
Gram_Stain:Gram_Neg 0.00050636333
Habitat:Aquatic 0.0065097991
Habitat:Host-associated 0.00616793206
Habitat:Specialized 0.0007451853
Optimal_temp.:80 0.005094923
Oxygen_Req:Anaerobic 0.000049213102
Oxygen_Req:Facultative 0.00027241201
Pathogenic_in:Human 0.00446253213
Pathogenic_in:No 0.000480718226
Shape:Irregular_coccus 0.0003889517
Temp._range:Hyperthermophilic 0.0017027523
Temp._range:Mesophilic 0.000113812473



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ORGANISMS DEPLETED FOR GROUP:




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PHYLOGENETIC PROFILE SIMILARITY WITH KNOWN PATHWAYS:

Pathways or complexes with absolute value of Pearson coefficient with respect to candidate larger than 0.4 are listed below
The candidate is assumed to exist in orgs listed in section List of organisms containing most genes from the group


Pathway or complex  # Orgs containing it  # of those orgs also containing candidate  Pearson Coeff  
ARGSYNBSUB-PWY (arginine biosynthesis II (acetyl cycle))3832030.4165
PWY-5986 (ammonium transport)3611950.4116
SULFATE-CYS-PWY (superpathway of sulfate assimilation and cysteine biosynthesis)3651950.4025



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PAIRWISE GENOME CONTEXT SCORE MATRIX:

  G6944   EG10068   EG10067   EG10066   EG10065   EG10064   
G75960.9997860.9990170.99890.9998150.9986310.999109
G69440.9989180.9992950.9999950.9991920.999537
EG100680.9988170.9990760.9991860.999399
EG100670.9993420.9988190.998942
EG100660.9993830.999625
EG100650.999834
EG10064



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PAIRWISE BLAST SCORES:

  G7596   G6944   EG10068   EG10067   EG10066   EG10065   EG10064   
G75960.0f0------
G6944-0.0f0--4.2e-130--
EG10068--0.0f0----
EG10067---0.0f0---
EG10066-4.2e-130--0.0f0--
EG10065-----0.0f0-
EG10064------0.0f0



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PATHWAYS OR PROTEIN COMPLEX MATCHES IN TARGET ORG:

For each case, all genes involved in the pathway or complex are listed. For each gene we list: a tag indicating whether the gene is part of the candidate list or not, the average and the minimum scores of the gene to the candidate list, the gene name, and its product names.

- GLUTORN-PWY (ornithine biosynthesis) (degree of match pw to cand: 0.667, degree of match cand to pw: 0.571, average score: 0.965)
  Genes in pathway or complex:
             0.9990 0.9980 EG10063 (argA) N-ACETYLTRANSFER-MONOMER (ArgA)
   *in cand* 0.9995 0.9989 EG10064 (argB) ACETYLGLUTKIN-MONOMER (acetylglutamate kinase monomer)
   *in cand* 0.9993 0.9986 EG10065 (argC) N-ACETYLGLUTPREDUCT-MONOMER (N-acetylglutamylphosphate reductase)
   *in cand* 0.9996 0.9991 EG10066 (argD) ACETYLORNTRANSAM-MONOMER (ArgD)
   *in cand* 0.9995 0.9989 G6944 (astC) SUCCORNTRANSAM-MONOMER (AstC)
             0.8351 0.5530 EG11286 (argE) ACETYLORNDEACET-MONOMER (ArgE)
  Genes in candidate but not in this pathway or complex:
   *in cand* 0.9992 0.9988 EG10067 (argF) CHAINF-MONOMER (ArgF)
   *in cand* 0.9992 0.9988 EG10068 (argG) ARGSUCCINSYN-MONOMER (ArgG)
   *in cand* 0.9993 0.9986 G7596 (ygjG) G7596-MONOMER (putrescine aminotransferase / diamine transaminase)

- ARG+POLYAMINE-SYN (superpathway of arginine and polyamine biosynthesis) (degree of match pw to cand: 0.278, degree of match cand to pw: 0.714, average score: 0.781)
  Genes in pathway or complex:
             0.5504 0.3049 EG10963 (speE) SPERMIDINESYN-MONOMER (SpeE)
             0.8897 0.8003 EG10131 (cadA) LYSDECARBOX-MONOMER (CadA)
             0.9138 0.8554 G6094 (ldcC) LDC2-MONOMER (LdcC)
             0.6043 0.1326 EG10962 (speD) SPED-MONOMER (adenosylmethionine decarboxylase, proenzyme)
             0.8728 0.7761 EG10961 (speC) ORNDECARBOX-BIO-MONOMER (SpeC)
             0.6886 0.2438 EG10959 (speA) ARGDECARBOXBIO-MONOMER (SpeA)
             0.4741 0.1337 EG10960 (speB) AGMATIN-MONOMER (SpeB)
             0.9990 0.9980 EG10063 (argA) N-ACETYLTRANSFER-MONOMER (ArgA)
   *in cand* 0.9995 0.9989 EG10064 (argB) ACETYLGLUTKIN-MONOMER (acetylglutamate kinase monomer)
   *in cand* 0.9993 0.9986 EG10065 (argC) N-ACETYLGLUTPREDUCT-MONOMER (N-acetylglutamylphosphate reductase)
   *in cand* 0.9996 0.9991 EG10066 (argD) ACETYLORNTRANSAM-MONOMER (ArgD)
             0.8351 0.5530 EG11286 (argE) ACETYLORNDEACET-MONOMER (ArgE)
             0.7532 0.4040 EG10134 (carA) CARBPSYN-SMALL (CarA)
             0.6549 0.2575 EG10135 (carB) CARBPSYN-LARGE (CarB)
   *in cand* 0.9992 0.9988 EG10067 (argF) CHAINF-MONOMER (ArgF)
             0.9991 0.9983 EG10069 (argI) CHAINI-MONOMER (ArgI)
             0.9985 0.9967 EG11223 (argH) ARGSUCCINLYA-MONOMER (argininosuccinate lyase)
   *in cand* 0.9992 0.9988 EG10068 (argG) ARGSUCCINSYN-MONOMER (ArgG)
  Genes in candidate but not in this pathway or complex:
   *in cand* 0.9995 0.9989 G6944 (astC) SUCCORNTRANSAM-MONOMER (AstC)
   *in cand* 0.9993 0.9986 G7596 (ygjG) G7596-MONOMER (putrescine aminotransferase / diamine transaminase)

- ARGSYN-PWY (arginine biosynthesis I) (degree of match pw to cand: 0.455, degree of match cand to pw: 0.714, average score: 0.905)
  Genes in pathway or complex:
   *in cand* 0.9992 0.9988 EG10068 (argG) ARGSUCCINSYN-MONOMER (ArgG)
             0.9985 0.9967 EG11223 (argH) ARGSUCCINLYA-MONOMER (argininosuccinate lyase)
             0.9991 0.9983 EG10069 (argI) CHAINI-MONOMER (ArgI)
   *in cand* 0.9992 0.9988 EG10067 (argF) CHAINF-MONOMER (ArgF)
             0.7532 0.4040 EG10134 (carA) CARBPSYN-SMALL (CarA)
             0.6549 0.2575 EG10135 (carB) CARBPSYN-LARGE (CarB)
             0.8351 0.5530 EG11286 (argE) ACETYLORNDEACET-MONOMER (ArgE)
   *in cand* 0.9996 0.9991 EG10066 (argD) ACETYLORNTRANSAM-MONOMER (ArgD)
   *in cand* 0.9993 0.9986 EG10065 (argC) N-ACETYLGLUTPREDUCT-MONOMER (N-acetylglutamylphosphate reductase)
   *in cand* 0.9995 0.9989 EG10064 (argB) ACETYLGLUTKIN-MONOMER (acetylglutamate kinase monomer)
             0.9990 0.9980 EG10063 (argA) N-ACETYLTRANSFER-MONOMER (ArgA)
  Genes in candidate but not in this pathway or complex:
   *in cand* 0.9995 0.9989 G6944 (astC) SUCCORNTRANSAM-MONOMER (AstC)
   *in cand* 0.9993 0.9986 G7596 (ygjG) G7596-MONOMER (putrescine aminotransferase / diamine transaminase)



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GENOME CONTEXT INFORMATION:

Each row corresponds to a replicon in an organism, each column to a gene in the candidate. The second column indicates whether the organims was included in the list used to compute the genome context scores or not. Some organisms are not included because they are phylogenetically too similar to others already in the list.
The number in the matrix indicate the position of the homolog of the gene in the replicon. All numbers are relative to the smaller one, which is assigned a position of zero. Two columns with the same number indicate that the two genes matched the same gene in that organism.

Genome browser links for gene clusters

The links below opens a genome browser BioCyc page for each cluster of genes in the target genome. These pages shows the central gene of the cluster in the target genome and its best homolog in the reference genomes, for the genomes that contain homologs for at least 75% of the genes in the group. Only one genome per phylogenetic cluster of organisms is shown, to keep the list smaller.

EG10064 EG10065 (centered at EG10064)
EG10066 (centered at EG10066)
EG10067 (centered at EG10067)
EG10068 (centered at EG10068)
G6944 (centered at G6944)
G7596 (centered at G7596)


ORG:REPLICON:CIRC?\GENE  IN REF LIST  G7596   G6944   EG10068   EG10067   EG10066   EG10065   EG10064   
302/623346/623413/623350/623345/623414/623428/623
AAEO224324:0:Tyes00790-013241456
AAUR290340:2:Tyes336430-
AAVE397945:0:Tyes0-684---2924
ABAC204669:0:Tyes911035611198035643563
ABAU360910:0:Tyes012742-12748651064
ABOR393595:0:Tyes521-5275205211510
ABUT367737:0:Tyes--350--822
ACAU438753:0:Tyes33653365443364336518310
ACEL351607:0:Tyes0102810251027102810311029
ACRY349163:8:Tyes-18020-1802-1402
ADEH290397:0:Tyes2128212825212127212810
AEHR187272:0:Tyes10131013514101210133470
AFER243159:0:Tyes2556255625582557-02696
AFUL224325:0:Tyes555--0-80425
AHYD196024:0:Tyes-252133365252101
AMAR234826:0:Tyes----0--
AMAR329726:9:Tyes8438433591496684303466
AMET293826:0:Tyes3550266703920266726702668
ANAE240017:0:Tyes210-2080210214211
AORE350688:0:Tyes0------
APER272557:0:Tyes---557-0-
APHA212042:0:Tyes-0--0--
APLE416269:0:Tyes-11801077--0
APLE434271:0:Tno-11841062--0
ASAL382245:5:Tyes-8843500884347348
ASP1667:3:Tyes3--4302
ASP232721:2:Tyes--20862341--0
ASP62928:0:Tyes101401012---2079
ASP62977:0:Tyes-3632364453634390
ASP76114:2:Tyes--2434--01979
AVAR240292:3:Tyes035281866199435283316340
BABO262698:0:Tno------0
BABO262698:1:Tno2392390-239--
BAFZ390236:2:Fyes---0---
BAMB339670:2:Tno--0----
BAMB339670:3:Tno-0--0-2122
BAMB398577:2:Tno--0933---
BAMB398577:3:Tno-0--0-1964
BAMY326423:0:Tyes2604315186302
BANT260799:0:Tno00--031
BANT261594:2:Tno00--031
BANT568206:2:Tyes00--031
BANT592021:2:Tno00--031
BAPH198804:0:Tyes-466230646601
BAPH372461:0:Tyes--1192--0
BBAC360095:0:Tyes-069-0-35
BBRO257310:0:Tyes041611172-416135623727
BBUR224326:21:Fno---0---
BCAN483179:0:Tno------0
BCAN483179:1:Tno2242240-224--
BCEN331271:1:Tno--0----
BCEN331271:2:Tno-0--021141793
BCEN331272:2:Tyes--0----
BCEN331272:3:Tyes-864--86402776
BCER226900:1:Tyes36413641413603641-3642
BCER288681:0:Tno11-0142
BCER315749:1:Tyes2352235228160235223552353
BCER405917:1:Tyes35223522-0352235253523
BCER572264:1:Tno00--031
BCLA66692:0:Tyes0260627902603260626092607
BFRA272559:1:Tyes-----2650
BFRA295405:0:Tno-----2960
BGAR290434:2:Fyes---0---
BHAL272558:0:Tyes332950364
BHEN283166:0:Tyes3737--37-0
BHER314723:0:Fyes---0---
BJAP224911:0:Fyes25095820-582-7630
BLIC279010:0:Tyes0-25983630780777779
BLON206672:0:Tyes---0-4-
BMAL243160:1:Tno-024734750-2368
BMAL320388:1:Tno-81914130819-1293
BMAL320389:1:Tyes-80312790803-2472
BMEL224914:0:Tno------0
BMEL224914:1:Tno00253-0--
BMEL359391:0:Tno------0
BMEL359391:1:Tno2282280-228--
BOVI236:0:Tyes------0
BOVI236:1:Tyes2142140-214--
BPAR257311:0:Tno034641720-346430023160
BPER257313:0:Tyes133552848-5523190
BPET94624:0:Tyes-02663-0555394
BPSE272560:1:Tyes-21939815402193-0
BPSE320372:1:Tno-257411718702574-0
BPSE320373:1:Tno-245611817282456-0
BPUM315750:0:Tyes2018-1516-302
BQUI283165:0:Tyes3535--35-0
BSP107806:2:Tyes-478231247801
BSP36773:1:Tyes--0----
BSP36773:2:Tyes-0--0-2186
BSP376:0:Tyes225161980-61985915493
BSUB:0:Tyes3060319176302
BSUI204722:0:Tyes------0
BSUI204722:1:Tyes2162160-216--
BSUI470137:0:Tno------0
BSUI470137:1:Tno2412410-241--
BTHA271848:1:Tno-159111921911591-0
BTHE226186:0:Tyes-----3670
BTHU281309:1:Tno35033503-0350335063504
BTHU412694:1:Tno32463246-0324632493247
BTRI382640:1:Tyes79790-79-42
BTUR314724:0:Fyes---0---
BVIE269482:6:Tyes--0----
BVIE269482:7:Tyes-801--80102861
BWEI315730:4:Tyes0260530972604260526082606
BXEN266265:0:Tyes---0---
CACE272562:1:Tyes205920596580205920612060
CAULO:0:Tyes21434580-458-155
CBEI290402:0:Tyes2437202620210202620232025
CBLO203907:0:Tyes---0---
CBLO291272:0:Tno---0---
CBOT36826:1:Tno--800---
CBOT441770:0:Tyes--780---
CBOT441771:0:Tno--770---
CBOT441772:1:Tno--790---
CBOT498213:1:Tno--780---
CBOT508765:1:Tyes--06-24
CBOT515621:2:Tyes--780---
CBOT536232:0:Tno--1340---
CCHL340177:0:Tyes0-270--264266
CCON360104:2:Tyes--3110---
CCUR360105:0:Tyes--290641-8800
CDES477974:0:Tyes291354302
CDIF272563:1:Tyes-2540253-257255
CDIP257309:0:Tyes33--302
CEFF196164:0:Fyes33--302
CFET360106:0:Tyes--495--0732
CGLU196627:0:Tyes33--302
CHOM360107:1:Tyes--42647-2860
CHUT269798:0:Tyes0----14201425
CHYD246194:0:Tyes0803801802803806804
CJAP155077:0:Tyes19451945--194502590
CJEI306537:0:Tyes--6--02
CJEJ192222:0:Tyes-3437-302
CJEJ195099:0:Tno--479-302
CJEJ354242:2:Tyes--422-302
CJEJ360109:0:Tyes--1043-302
CJEJ407148:0:Tno-3433-302
CKLU431943:1:Tyes-57501388575572574
CKOR374847:0:Tyes654-01165-633-
CMAQ397948:0:Tyes594--0-1213-
CMET456442:0:Tyes2101--782-03
CMIC31964:2:Tyes33-4302
CMIC443906:2:Tyes2201253
CNOV386415:0:Tyes22192759201
CPEL335992:0:Tyes-2160-216740176
CPER195102:1:Tyes--5390---
CPER195103:0:Tno--5100---
CPER289380:3:Tyes---0---
CPHY357809:0:Tyes-151514950151515121514
CPSY167879:0:Tyes-1683-16801
CRUT413404:0:Tyes280-0--85573
CSAL290398:0:Tyes-93--930269
CSP501479:7:Fyes--0----
CSP501479:8:Fyes378378--37824120
CSP78:2:Tyes00356717410-3361
CSUL444179:0:Tyes-----0-
CTEP194439:0:Tyes-0738--733735
CTET212717:0:Tyes--0----
CVES412965:0:Tyes--0--77165
CVIO243365:0:Tyes-05112339022522479
DARO159087:0:Tyes-1066--2424-0
DDES207559:0:Tyes-01126112702063601
DETH243164:0:Tyes11313413510
DGEO319795:1:Tyes1329-19791518-6050
DHAF138119:0:Tyes332524302
DNOD246195:0:Tyes---0---
DOLE96561:0:Tyes4664664644654660467
DPSY177439:2:Tyes220129263
DRAD243230:3:Tyes120-0--2881736
DRED349161:0:Tyes1790365302
DSHI398580:5:Tyes488488318911748814600
DSP216389:0:Tyes11313613130
DSP255470:0:Tno11314014730
DVUL882:1:Tyes-184460160218440970
ECAN269484:0:Tyes-0154-0609232
ECAR218491:0:Tyes14614022029440228788
ECHA205920:0:Tyes-27682-2763980
ECOL199310:0:Tno1657017543159195627292730
ECOL316407:0:Tno2797148628950364130423041
ECOL331111:6:Tno1504016182738178424292430
ECOL362663:0:Tno1476015732795176324732474
ECOL364106:1:Tno1565016582898190925902591
ECOL405955:2:Tyes1497015822740175423632364
ECOL409438:6:Tyes1468015722715174323892390
ECOL413997:0:Tno1243013402447152021582159
ECOL439855:4:Tno1867019673181028722873
ECOL469008:0:Tno28715241873384036803679
ECOL481805:0:Tno28115451813421037293728
ECOL585034:0:Tno1395015002618167323142315
ECOL585035:0:Tno1613017012926189025212522
ECOL585055:0:Tno1545016502836182324802481
ECOL585056:2:Tno1518016182738179024442445
ECOL585057:0:Tno2257023573410253417191718
ECOL585397:0:Tno1756018463079203426602661
ECOL83334:0:Tno1541016402862180625022503
ECOLI:0:Tno2862150929600314737543755
ECOO157:0:Tno1508016112799177924902491
EFAE226185:3:Tyes---0---
EFER585054:1:Tyes1705018332980200924692468
ELIT314225:0:Tyes-12280-1228-747
ERUM254945:0:Tyes-0182-0636267
ERUM302409:0:Tno-0183-0631262
ESP42895:1:Tyes3098125531790335836093608
FALN326424:0:Tyes3-0-36-
FJOH376686:0:Tyes1224----50
FMAG334413:1:Tyes---0---
FNOD381764:0:Tyes---0---
FPHI484022:1:Tyes3-0--46
FSP106370:0:Tyes3-0--64
FSP1855:0:Tyes3959-64-02
FSUC59374:0:Tyes-16250-1625-1624
GBET391165:0:Tyes16852011020102011-471
GFOR411154:0:Tyes0----13351330
GKAU235909:1:Tyes3319886302
GMET269799:1:Tyes113214040
GOXY290633:5:Tyes-977097697711811563
GSUL243231:0:Tyes1132127100
GTHE420246:1:Tyes04992473502499496498
GURA351605:0:Tyes113218230
GVIO251221:0:Tyes0024162585035083428
HARS204773:0:Tyes-476585--02592
HAUR316274:2:Tyes012588378341258841-
HBUT415426:0:Tyes---0---
HCHE349521:0:Tyes4825883-429188350460
HDUC233412:0:Tyes-5828610--581
HHAL349124:0:Tyes220-21611584
HHEP235279:0:Tyes--1074--5070
HINF281310:0:Tyes--11520---
HINF374930:0:Tyes--0----
HINF71421:0:Tno--11120---
HMAR272569:8:Tyes-----0-
HMOD498761:0:Tyes507387302
HMUK485914:1:Tyes2--4-0-
HNEP81032:0:Tyes-1613022-161-0
HSOM205914:1:Tyes--0----
HSOM228400:0:Tno--0----
HWAL362976:1:Tyes2----0-
IHOS453591:0:Tyes--0769-93-
ILOI283942:0:Tyes-17563-175601
JSP290400:1:Tyes9659650-9652289572
JSP375286:0:Tyes-397561--02977
KPNE272620:2:Tyes0234681136234733734
KRAD266940:2:Fyes2154-0--21512153
LBIF355278:1:Tyes------0
LBIF355278:2:Tyes--0--1329-
LBIF456481:1:Tno------0
LBIF456481:2:Tno--0--1375-
LBOR355276:0:Tyes------0
LBOR355276:1:Tyes--0--1256-
LBOR355277:0:Tno------0
LBOR355277:1:Tno--1384--0-
LBRE387344:2:Tyes---0---
LCAS321967:1:Tyes--0----
LCHO395495:0:Tyes--374---0
LINN272626:1:Tno--5920-42
LINT189518:0:Tyes------0
LINT189518:1:Tyes--2006--0-
LINT267671:0:Tno------0
LINT267671:1:Tno--1549--0-
LINT363253:3:Tyes-0566--12245
LLAC272622:5:Tyes--02074-689692
LLAC272623:0:Tyes--01912-673676
LMES203120:1:Tyes--13421340-20
LMON169963:0:Tno--5310142
LMON265669:0:Tyes--5070142
LPLA220668:0:Tyes--2304-02
LPNE272624:0:Tno246424640-2464--
LPNE297245:1:Fno236723670-2367--
LPNE297246:1:Fyes249024900-2490--
LPNE400673:0:Tno4284280-428--
LREU557436:0:Tyes---0---
LSAK314315:0:Tyes---0---
LSPH444177:1:Tyes0-26853344343634393437
LWEL386043:0:Tyes--5110142
LXYL281090:0:Tyes-313514302
MABS561007:1:Tyes0616462615860
MACE188937:0:Tyes0--3102-33484276
MAEO419665:0:Tyes505505487-50511710
MAER449447:0:Tyes2986136605241136617482244
MAQU351348:2:Tyes-2601--260102840
MART243272:0:Tyes---0---
MAVI243243:0:Tyes3302364
MBAR269797:1:Tyes0--257601116311
MBOV233413:0:Tno336430-
MBOV410289:0:Tno336430-
MBUR259564:0:Tyes2027--928-12050
MCAP243233:0:Tyes13001300-1301130001969
MCAP340047:0:Tyes---0---
MEXT419610:0:Tyes-17740-1774-49
MFLA265072:0:Tyes165016501648--02194
MGIL350054:3:Tyes330236-
MHUN323259:0:Tyes1385--0-20812084
MJAN243232:2:Tyes67167137084067110530
MKAN190192:0:Tyes525525--5250550
MLAB410358:0:Tyes---0-13091311
MLEP272631:0:Tyes336430-
MLOT266835:2:Tyes102210220-1022-359
MMAG342108:0:Tyes496496809-014774042
MMAR267377:0:Tyes10561056--1056630
MMAR368407:0:Tyes1785--864-03
MMAR394221:0:Tyes-1212538-1210-
MMAR402880:1:Tyes001104-010621114
MMAR426368:0:Tyes00--0796731
MMAR444158:0:Tyes761761--761059
MMAZ192952:0:Tyes1294--0-3431100
MPEN272633:0:Tyes---0---
MPET420662:1:Tyes2949-2955--0426
MPNE272634:0:Tyes---0---
MSED399549:0:Tyes5----0-
MSME246196:0:Tyes330236-
MSP164756:1:Tno330-364
MSP164757:0:Tno330-364
MSP189918:2:Tyes330-364
MSP266779:3:Tyes00335422550-376
MSP400668:0:Tyes-49391913664938700
MSP409:2:Tyes544454445550-544434840
MSTA339860:0:Tyes66-06518516
MSUC221988:0:Tyes-571128887357101
MTBCDC:0:Tno336430-
MTBRV:0:Tno336430-
MTHE187420:0:Tyes11531153-126211536620
MTHE264732:0:Tyes0488486487488491489
MTHE349307:0:Tyes0---01721391
MTUB336982:0:Tno336430-
MTUB419947:0:Tyes336430-
MVAN350058:0:Tyes190019001897019001903-
MXAN246197:0:Tyes00--02020-
NARO279238:0:Tyes-19840-1984-2141
NEUR228410:0:Tyes0-1316--1361877
NEUT335283:2:Tyes1388-1277--01592
NFAR247156:2:Tyes3326-302
NGON242231:0:Tyes-495169410134950671
NHAM323097:2:Tyes195502865-016012942
NMEN122586:0:Tno28128110074722816780
NMEN122587:0:Tyes-1189013701189354914
NMEN272831:0:Tno77277214649247720545
NMEN374833:0:Tno-831162810228310543
NMUL323848:3:Tyes477-479-4770552
NOCE323261:1:Tyes1356----01917
NPHA348780:1:Tyes0------
NPHA348780:2:Tyes---4-0-
NSP103690:6:Tyes133203756386702482165
NSP35761:1:Tyes45-480454244
NSP387092:0:Tyes--6520-970696
NWIN323098:0:Tyes002312-0-2578
OANT439375:1:Tyes---0---
OANT439375:5:Tyes3143140-314-1296
OCAR504832:0:Tyes23693600-36017173237
OIHE221109:0:Tyes186965227150-649651
PABY272844:0:Tyes295--891-0-
PACN267747:0:Tyes--16080-775-
PAER178306:0:Tyes---0-662-
PAER208963:0:Tyes-35888184875358805029
PAER208964:0:Tno-2402903457524004726
PARC259536:0:Tyes--1057375-9210
PARS340102:0:Tyes0----767-
PATL342610:0:Tyes-0327-0330329
PCAR338963:0:Tyes1855205235215200519
PCRY335284:1:Tyes--1290--11060
PDIS435591:0:Tyes-----0420
PENT384676:0:Tyes-32077003733320704680
PFLU205922:0:Tyes3530-10208341276
PFLU216595:1:Tyes03009-3132300937774205
PFLU220664:0:Tyes0203023652150203030963538
PFUR186497:0:Tyes1235-0397-1511-
PGIN242619:0:Tyes0------
PHAL326442:0:Tyes----0--
PHAL326442:1:Tyes-02138--21412140
PHOR70601:0:Tyes726--0-1043-
PING357804:0:Tyes-32083-320801
PISL384616:0:Tyes1440--1502-0-
PLUM243265:0:Fyes-277444404163044424441
PLUT319225:0:Tyes--0--53
PMAR146891:0:Tyes9429421359--4120
PMAR167539:0:Tyes-8891402849-4520
PMAR167540:0:Tyes-8151233--3980
PMAR167542:0:Tyes-9201364--4200
PMAR167546:0:Tyes9629621380--4420
PMAR167555:0:Tyes--16541131-4350
PMAR59920:0:Tno-5571018--01546
PMAR74546:0:Tyes9119111328--4110
PMAR74547:0:Tyes--1579--0560
PMAR93060:0:Tyes-9591421916-4230
PMEN399739:0:Tyes-18342910183428643314
PMOB403833:0:Tyes1618161816200161816221617
PMUL272843:1:Tyes-04694640774775
PNAP365044:8:Tyes--0---2413
PPEN278197:0:Tyes---0---
PPRO298386:2:Tyes-2322092301
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