CANDIDATE ID: 356

CANDIDATE ID: 356

NUMBER OF GENES: 7
AVERAGE SCORE:    9.9916876e-1 (range=[0.0,1.0])
AVERAGE MINIMUM BLAST P-VAL:    1.0000000e+0

Gene List
List of organisms containing most genes from the group
    Phylogenetic tree highlighting these organisms (opens new page)
List of organisms containing very few or no genes from the group
List of organisms enriched for group
List of organisms depleted for group
Phylogenetic profile similarity with known pathways
Pairwise genome context scores
Pairwise Blast scores
Pathway or protein complex matches in target organism
Genome context matrix
    Genes and their orthologs in genome browser BioCyc pages



GENE LIST:

- EG11312 (yicR) (b3638)
   Products of gene:
     - EG11312-MONOMER (hypothetical protein)

- EG11192 (yicC) (b3644)
   Products of gene:
     - EG11192-MONOMER (conserved protein)

- EG11191 (slmA) (b3641)
   Products of gene:
     - EG11191-MONOMER (cell division inhibitor)

- EG10886 (rpmB) (b3637)
   Products of gene:
     - EG10886-MONOMER (50S ribosomal subunit protein L28)
     - CPLX0-3962 (50S ribosomal subunit)
     - CPLX0-3964 (ribosome)

- EG10863 (rph) (b3643)
   Products of gene:
     - EG10863-MONOMER (RNase PH monomer)
     - CPLX0-1081 (RNase PH)
       Reactions:
        a tRNA precursor with a short 3' extension + n phosphate  ->  an uncharged tRNA + n a ribonucleoside diphosphate
         In pathways
         PWY0-1479 (tRNA processing pathway)
        a tRNA precursor with a 5' extension and a short 3' extension + n phosphate  ->  a tRNA precursor with a 5' extension + n a nucleoside diphosphate
         In pathways
         PWY0-1479 (tRNA processing pathway)
        phosphate  =  a nucleoside diphosphate

- EG10808 (pyrE) (b3642)
   Products of gene:
     - OROPRIBTRANS-MONOMER (PyrE)
     - OROPRIBTRANS-CPLX (orotate phosphoribosyltransferase)
       Reactions:
        orotidine-5'-phosphate + diphosphate  =  5-phospho-alpha-D-ribose 1-diphosphate + orotate
         In pathways
         PRPP-PWY (superpathway of histidine, purine, and pyrimidine biosynthesis)
         PWY0-162 (pyrimidine ribonucleotides de novo biosynthesis)
         PWY-5686 (uridine-5'-phosphate biosynthesis)

- EG10004 (dfp) (b3639)
   Products of gene:
     - EG10004-MONOMER (Dfp)
     - CPLX0-341 (fused 4'-phosphopantothenoylcysteine decarboxylase and phosphopantothenoylcysteine synthetase)
       Reactions:
        D-4'-phosphopantothenate + L-cysteine + CTP  ->  diphosphate + CMP + R-4'-phosphopantothenoyl-L-cysteine + H+
         In pathways
         PANTOSYN-PWY (pantothenate and coenzyme A biosynthesis I)
         PWY-4221 (PWY-4221)
         PWY-4242 (PWY-4242)
         COA-PWY (coenzyme A biosynthesis)
        R-4'-phosphopantothenoyl-L-cysteine + H+  ->  4'-phosphopantetheine + CO2
         In pathways
         PANTOSYN-PWY (pantothenate and coenzyme A biosynthesis I)
         PWY-4221 (PWY-4221)
         PWY-4242 (PWY-4242)
         COA-PWY (coenzyme A biosynthesis)



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ORGANISMS CONTAINING AT LEAST 6 GENES FROM THE GROUP:

Total number of orgs: 191
Effective number of orgs (counting one per cluster within 468 clusters): 122

Organism list
Homologs in each organism in the list
Features enriched in organism list


Follow (ncbi) link, when present, to find the set of organism features for each organism
Org ID  Org Name  # genes in group found in org  
YPSE349747 ncbi Yersinia pseudotuberculosis IP 317587
YPSE273123 ncbi Yersinia pseudotuberculosis IP 329537
YPES386656 ncbi Yersinia pestis Pestoides F7
YPES377628 ncbi Yersinia pestis Nepal5167
YPES360102 ncbi Yersinia pestis Antiqua7
YPES349746 ncbi Yersinia pestis Angola7
YPES214092 ncbi Yersinia pestis CO927
YPES187410 ncbi Yersinia pestis KIM 106
YENT393305 ncbi Yersinia enterocolitica enterocolitica 80817
XORY360094 ncbi Xanthomonas oryzae pv. oryzae PXO99A6
XORY342109 ncbi Xanthomonas oryzae pv. oryzae MAFF 3110186
XFAS405440 ncbi Xylella fastidiosa M126
XFAS183190 ncbi Xylella fastidiosa Temecula16
XFAS160492 ncbi Xylella fastidiosa 9a5c6
XCAM487884 Xanthomonas campestris pv. paulliniae6
XCAM316273 ncbi Xanthomonas campestris pv. vesicatoria str. 85-106
XCAM314565 ncbi Xanthomonas campestris pv. campestris str. 80046
XCAM190485 ncbi Xanthomonas campestris pv. campestris str. ATCC 339136
XAXO190486 ncbi Xanthomonas axonopodis pv. citri str. 3066
VVUL216895 ncbi Vibrio vulnificus CMCP67
VVUL196600 ncbi Vibrio vulnificus YJ0167
VPAR223926 ncbi Vibrio parahaemolyticus RIMD 22106337
VFIS312309 ncbi Vibrio fischeri ES1147
VCHO345073 ncbi Vibrio cholerae O3957
VCHO ncbi Vibrio cholerae O1 biovar El Tor str. N169617
TTUR377629 ncbi Teredinibacter turnerae T79017
TDEN292415 ncbi Thiobacillus denitrificans ATCC 252597
STYP99287 ncbi Salmonella enterica enterica serovar Typhimurium str. LT27
SSP94122 ncbi Shewanella sp. ANA-37
SSP644076 Silicibacter sp. TrichCH4B6
SSP292414 ncbi Ruegeria sp. TM10406
SSON300269 ncbi Shigella sonnei Ss0466
SSED425104 ncbi Shewanella sediminis HAW-EB37
SPRO399741 ncbi Serratia proteamaculans 5687
SPEA398579 ncbi Shewanella pealeana ATCC 7003457
SONE211586 ncbi Shewanella oneidensis MR-17
SLOI323850 ncbi Shewanella loihica PV-47
SLAC55218 Ruegeria lacuscaerulensis6
SHIGELLA ncbi Shigella flexneri 2a str. 2457T7
SHAL458817 ncbi Shewanella halifaxensis HAW-EB47
SGLO343509 ncbi Sodalis glossinidius morsitans6
SFLE373384 ncbi Shigella flexneri 5 str. 84016
SFLE198214 ncbi Shigella flexneri 2a str. 3017
SENT454169 ncbi Salmonella enterica enterica serovar Heidelberg str. SL4767
SENT321314 ncbi Salmonella enterica enterica serovar Choleraesuis str. SC-B677
SENT295319 ncbi Salmonella enterica enterica serovar Paratyphi A str. ATCC 91507
SENT220341 ncbi Salmonella enterica enterica serovar Typhi str. CT187
SENT209261 ncbi Salmonella enterica enterica serovar Typhi str. Ty27
SDYS300267 ncbi Shigella dysenteriae Sd1977
SDEN318161 ncbi Shewanella denitrificans OS2177
SDEG203122 ncbi Saccharophagus degradans 2-407
SBOY300268 ncbi Shigella boydii Sb2277
SBAL402882 ncbi Shewanella baltica OS1857
SBAL399599 ncbi Shewanella baltica OS1957
RSPH272943 ncbi Rhodobacter sphaeroides 2.4.16
RSOL267608 ncbi Ralstonia solanacearum GMI10007
RMET266264 ncbi Ralstonia metallidurans CH346
RFER338969 ncbi Rhodoferax ferrireducens T1187
REUT381666 ncbi Ralstonia eutropha H167
REUT264198 ncbi Ralstonia eutropha JMP1347
RETL347834 ncbi Rhizobium etli CFN 426
RDEN375451 ncbi Roseobacter denitrificans OCh 1146
PSYR223283 ncbi Pseudomonas syringae pv. tomato str. DC30007
PSYR205918 ncbi Pseudomonas syringae pv. syringae B728a7
PSTU379731 ncbi Pseudomonas stutzeri A15016
PSP312153 ncbi Polynucleobacter necessarius asymbioticus QLW-P1DMWA-17
PSP296591 ncbi Polaromonas sp. JS6667
PPUT76869 ncbi Pseudomonas putida GB-16
PPUT351746 ncbi Pseudomonas putida F16
PPUT160488 ncbi Pseudomonas putida KT24406
PPRO298386 ncbi Photobacterium profundum SS97
PMUL272843 ncbi Pasteurella multocida multocida Pm707
PMEN399739 ncbi Pseudomonas mendocina ymp6
PLUM243265 ncbi Photorhabdus luminescens laumondii TTO17
PING357804 ncbi Psychromonas ingrahamii 377
PHAL326442 ncbi Pseudoalteromonas haloplanktis TAC1257
PFLU220664 ncbi Pseudomonas fluorescens Pf-56
PFLU216595 ncbi Pseudomonas fluorescens SBW257
PFLU205922 ncbi Pseudomonas fluorescens Pf0-16
PENT384676 ncbi Pseudomonas entomophila L486
PCAR338963 ncbi Pelobacter carbinolicus DSM 23806
PATL342610 ncbi Pseudoalteromonas atlantica T6c7
PAER208964 ncbi Pseudomonas aeruginosa PAO16
PAER208963 ncbi Pseudomonas aeruginosa UCBPP-PA146
OCAR504832 ncbi Oligotropha carboxidovorans OM56
NOCE323261 ncbi Nitrosococcus oceani ATCC 197076
NMUL323848 ncbi Nitrosospira multiformis ATCC 251967
NMEN272831 ncbi Neisseria meningitidis FAM186
NMEN122587 ncbi Neisseria meningitidis Z24916
NMEN122586 ncbi Neisseria meningitidis MC586
NGON242231 ncbi Neisseria gonorrhoeae FA 10906
NEUT335283 ncbi Nitrosomonas eutropha C917
NEUR228410 ncbi Nitrosomonas europaea ATCC 197186
MXAN246197 ncbi Myxococcus xanthus DK 16226
MSUC221988 ncbi Mannheimia succiniciproducens MBEL55E6
MSP400668 ncbi Marinomonas sp. MWYL17
MPET420662 ncbi Methylibium petroleiphilum PM17
MFLA265072 ncbi Methylobacillus flagellatus KT7
MAQU351348 ncbi Marinobacter aquaeolei VT87
LPNE400673 ncbi Legionella pneumophila Corby6
LPNE297246 ncbi Legionella pneumophila Paris6
LPNE297245 ncbi Legionella pneumophila Lens6
LPNE272624 ncbi Legionella pneumophila pneumophila Philadelphia 16
LMON265669 ncbi Listeria monocytogenes 4b F23656
LINN272626 ncbi Listeria innocua Clip112626
LCHO395495 ncbi Leptothrix cholodnii SP-67
KPNE272620 ncbi Klebsiella pneumoniae pneumoniae MGH 785787
JSP375286 ncbi Janthinobacterium sp. Marseille7
ILOI283942 ncbi Idiomarina loihiensis L2TR7
HSOM228400 ncbi Haemophilus somnus 23366
HSOM205914 ncbi Haemophilus somnus 129PT6
HINF71421 ncbi Haemophilus influenzae Rd KW207
HINF374930 ncbi Haemophilus influenzae PittEE7
HINF281310 ncbi Haemophilus influenzae 86-028NP7
HHAL349124 ncbi Halorhodospira halophila SL16
HDUC233412 ncbi Haemophilus ducreyi 35000HP7
HCHE349521 ncbi Hahella chejuensis KCTC 23967
HARS204773 ncbi Herminiimonas arsenicoxydans7
GURA351605 ncbi Geobacter uraniireducens Rf46
GSUL243231 ncbi Geobacter sulfurreducens PCA6
ESP42895 Enterobacter sp.7
EFER585054 ncbi Escherichia fergusonii ATCC 354697
ECOO157 ncbi Escherichia coli O157:H7 EDL9337
ECOL83334 Escherichia coli O157:H77
ECOL585397 ncbi Escherichia coli ED1a7
ECOL585057 ncbi Escherichia coli IAI397
ECOL585056 ncbi Escherichia coli UMN0267
ECOL585055 ncbi Escherichia coli 559897
ECOL585035 ncbi Escherichia coli S887
ECOL585034 ncbi Escherichia coli IAI17
ECOL481805 ncbi Escherichia coli ATCC 87397
ECOL469008 ncbi Escherichia coli BL21(DE3)7
ECOL439855 ncbi Escherichia coli SMS-3-57
ECOL413997 ncbi Escherichia coli B str. REL6067
ECOL409438 ncbi Escherichia coli SE117
ECOL405955 ncbi Escherichia coli APEC O16
ECOL364106 ncbi Escherichia coli UTI897
ECOL362663 ncbi Escherichia coli 5367
ECOL331111 ncbi Escherichia coli E24377A7
ECOL316407 ncbi Escherichia coli K-12 substr. W31106
ECOL199310 ncbi Escherichia coli CFT0737
ECAR218491 ncbi Pectobacterium atrosepticum SCRI10437
DPSY177439 ncbi Desulfotalea psychrophila LSv546
DNOD246195 ncbi Dichelobacter nodosus VCS1703A6
DARO159087 ncbi Dechloromonas aromatica RCB7
CVIO243365 ncbi Chromobacterium violaceum ATCC 124726
CSP501479 Citreicella sp. SE456
CSAL290398 ncbi Chromohalobacter salexigens DSM 30437
CPSY167879 ncbi Colwellia psychrerythraea 34H6
CJAP155077 Cellvibrio japonicus7
BWEI315730 ncbi Bacillus weihenstephanensis KBAB46
BVIE269482 ncbi Burkholderia vietnamiensis G46
BTHU412694 ncbi Bacillus thuringiensis Al Hakam6
BTHU281309 ncbi Bacillus thuringiensis serovar konkukian str. 97-276
BTHA271848 ncbi Burkholderia thailandensis E2646
BSUB ncbi Bacillus subtilis subtilis 1686
BSP376 Bradyrhizobium sp.6
BSP36773 Burkholderia sp.6
BPSE320373 ncbi Burkholderia pseudomallei 6686
BPSE320372 ncbi Burkholderia pseudomallei 1710b6
BPSE272560 ncbi Burkholderia pseudomallei K962436
BPET94624 Bordetella petrii7
BPER257313 ncbi Bordetella pertussis Tohama I7
BPAR257311 ncbi Bordetella parapertussis 128227
BMAL320389 ncbi Burkholderia mallei NCTC 102476
BMAL320388 ncbi Burkholderia mallei SAVP16
BMAL243160 ncbi Burkholderia mallei ATCC 233446
BCER572264 ncbi Bacillus cereus 03BB1026
BCER405917 Bacillus cereus W6
BCER288681 ncbi Bacillus cereus E33L6
BCEN331272 ncbi Burkholderia cenocepacia HI24246
BCEN331271 ncbi Burkholderia cenocepacia AU 10546
BBRO257310 ncbi Bordetella bronchiseptica RB507
BANT592021 ncbi Bacillus anthracis A02486
BANT568206 ncbi Bacillus anthracis CDC 6846
BANT261594 ncbi Bacillus anthracis Ames Ancestor6
BANT260799 ncbi Bacillus anthracis Sterne6
BAMB398577 ncbi Burkholderia ambifaria MC40-66
BAMB339670 ncbi Burkholderia ambifaria AMMD6
ASP76114 ncbi Aromatoleum aromaticum EbN17
ASP62928 ncbi Azoarcus sp. BH726
ASP232721 ncbi Acidovorax sp. JS427
ASAL382245 ncbi Aeromonas salmonicida salmonicida A4497
APLE434271 ncbi Actinobacillus pleuropneumoniae serovar 3 str. JL037
APLE416269 ncbi Actinobacillus pleuropneumoniae L207
AHYD196024 Aeromonas hydrophila dhakensis7
AEHR187272 ncbi Alkalilimnicola ehrlichii MLHE-17
ABOR393595 ncbi Alcanivorax borkumensis SK27
ABAU360910 ncbi Bordetella avium 197N7
AAVE397945 ncbi Acidovorax citrulli AAC00-17
AAEO224324 ncbi Aquifex aeolicus VF56


Names of the homologs of the genes in the group in each of these orgs
  EG11312   EG11192   EG11191   EG10886   EG10863   EG10808   EG10004   
YPSE349747 YPSIP31758_0061YPSIP31758_0055YPSIP31758_0058YPSIP31758_0062YPSIP31758_0056YPSIP31758_0057YPSIP31758_0060
YPSE273123 YPTB0046YPTB0040YPTB0043YPTB0047YPTB0041YPTB0042YPTB0045
YPES386656 YPDSF_3856YPDSF_3862YPDSF_3859YPDSF_3855YPDSF_3861YPDSF_3860YPDSF_3857
YPES377628 YPN_3801YPN_3807YPN_3804YPN_3800YPN_3806YPN_3805YPN_3802
YPES360102 YPA_3493YPA_3499YPA_3496YPA_3492YPA_3498YPA_3497YPA_3494
YPES349746 YPANGOLA_A0055YPANGOLA_A0048YPANGOLA_A0052YPANGOLA_A0056YPANGOLA_A0049YPANGOLA_A0051YPANGOLA_A0054
YPES214092 YPO0049YPO0043YPO0046YPO0050YPO0044YPO0045YPO0048
YPES187410 Y0092Y0098Y0095Y0097Y0096Y0093
YENT393305 YE0063YE0057YE0060YE0064YE0058YE0059YE0062
XORY360094 XOOORF_4883XOOORF_4204XOOORF_5179XOOORF_4205XOOORF_4869XOOORF_4882
XORY342109 XOO0462XOO1041XOO4295XOO1040XOO0474XOO0463
XFAS405440 XFASM12_0125XFASM12_0844XFASM12_0546XFASM12_0845XFASM12_0130XFASM12_0126
XFAS183190 PD_0117PD_0721PD_0488PD_0722PD_0122PD_0118
XFAS160492 XF0148XF1504XF1206XF1505XF0153XF0149
XCAM487884 XCC-B100_4044XCC-B100_0934XCC-B100_4230XCC-B100_0933XCC-B100_4031XCC-B100_4043
XCAM316273 XCAORF_0429XCAORF_3591XCAORF_0226XCAORF_3592XCAORF_0442XCAORF_0430
XCAM314565 XC_3944XC_0959XC_4123XC_0960XC_3931XC_3943
XCAM190485 XCC3860XCC3250XCC4034XCC3251XCC3847XCC3859
XAXO190486 XAC3915XAC3396XAC4159XAC3397XAC3903XAC3914
VVUL216895 VV1_0825VV1_0833VV1_0829VV1_0824VV1_0832VV1_0831VV1_0828
VVUL196600 VV0285VV0278VV0282VV0286VV0279VV0280VV0283
VPAR223926 VP0184VP0176VP0180VP0185VP0177VP0178VP0181
VFIS312309 VF0126VF0110VF0123VF0127VF0111VF0112VF0125
VCHO345073 VC0395_A2597VC0395_A2588VC0395_A2593VC0395_A2599VC0395_A2589VC0395_A2590VC0395_A2595
VCHO VC0217VC0209VC0214VC0218VC0210VC0211VC0215
TTUR377629 TERTU_0184TERTU_0175TERTU_0188TERTU_0181TERTU_0176TERTU_0190TERTU_0185
TDEN292415 TBD_2588TBD_0474TBD_2389TBD_2589TBD_0477TBD_0255TBD_2587
STYP99287 STM3729STM3735STM3732STM3728STM3734STM3733STM3730
SSP94122 SHEWANA3_3770SHEWANA3_3778SHEWANA3_3773SHEWANA3_3769SHEWANA3_3777SHEWANA3_3776SHEWANA3_3771
SSP644076 SCH4B_3369SCH4B_2332SCH4B_3990SCH4B_3196SCH4B_1996SCH4B_1303
SSP292414 TM1040_0008TM1040_1267TM1040_0671TM1040_2872TM1040_1777TM1040_0458
SSON300269 SSO_3762SSO_3765SSO_3770SSO_3763SSO_3764SSO_3767
SSED425104 SSED_0385SSED_0377SSED_0382SSED_0386SSED_0378SSED_0379SSED_0384
SPRO399741 SPRO_4842SPRO_4848SPRO_4845SPRO_4841SPRO_4847SPRO_4846SPRO_4843
SPEA398579 SPEA_3837SPEA_3845SPEA_3840SPEA_3836SPEA_3844SPEA_3843SPEA_3838
SONE211586 SO_4248SO_4257SO_4251SO_4247SO_4256SO_4255SO_4249
SLOI323850 SHEW_3481SHEW_3489SHEW_3484SHEW_3480SHEW_3488SHEW_3487SHEW_3482
SLAC55218 SL1157_1141SL1157_2860SL1157_0112SL1157_1093SL1157_2677SL1157_0579
SHIGELLA RADCYICCTTKRPMBRPHPYREDFP
SHAL458817 SHAL_0429SHAL_0421SHAL_0426SHAL_0430SHAL_0422SHAL_0423SHAL_0428
SGLO343509 SG2214SG2211SG2208SG2213SG2212SG2209
SFLE373384 SFV_3892SFV_3886SFV_3889SFV_3887SFV_3888SFV_3891
SFLE198214 AAN45124.1AAN45130.1AAN45127.1AAN45123.1AAN45129.1AAN45128.1AAN45125.1
SENT454169 SEHA_C4055SEHA_C4061SEHA_C4058SEHA_C4054SEHA_C4060SEHA_C4059SEHA_C4056
SENT321314 SCH_3652SCH_3658SCH_3655SCH_3651SCH_3657SCH_3656SCH_3653
SENT295319 SPA3581SPA3587SPA3584SPA3580SPA3586SPA3585SPA3582
SENT220341 STY4065STY4059STY4062STY4066STY4060STY4061STY4064
SENT209261 T3789T3783T3786T3790T3784T3785T3788
SDYS300267 SDY_4068SDY_4075SDY_4071SDY_4067SDY_4074SDY_4073SDY_4069
SDEN318161 SDEN_0326SDEN_0318SDEN_0323SDEN_0327SDEN_0319SDEN_0320SDEN_0325
SDEG203122 SDE_3678SDE_3684SDE_3674SDE_3679SDE_3683SDE_3672SDE_3677
SBOY300268 SBO_3640SBO_3646SBO_3643SBO_3639SBO_3645SBO_3644SBO_3641
SBAL402882 SHEW185_0376SHEW185_0367SHEW185_0373SHEW185_0377SHEW185_0369SHEW185_0370SHEW185_0375
SBAL399599 SBAL195_0388SBAL195_0380SBAL195_0385SBAL195_0389SBAL195_0381SBAL195_0382SBAL195_0387
RSPH272943 RSP_1171RSP_2920RSP_2016RSP_1221RSP_1929RSP_0599
RSOL267608 RSC2444RSC2156RSC0031RSC2445RSC2159RSC0139RSC2461
RMET266264 RMET_0855RMET_0142RMET_2870RMET_0852RMET_0150RMET_2887
RFER338969 RFER_3252RFER_1626RFER_3521RFER_3180RFER_1629RFER_3928RFER_2647
REUT381666 H16_A3033H16_A0952H16_A0210H16_A3034H16_A0949H16_A0224H16_A3048
REUT264198 REUT_A2732REUT_A2474REUT_A0182REUT_A2733REUT_A2477REUT_A0195REUT_A2747
RETL347834 RHE_CH01848RHE_CH01447RHE_CH03816RHE_CH00363RHE_CH00474RHE_CH00342
RDEN375451 RD1_3690RD1_2637RD1_1680RD1_0426RD1_3236RD1_1200
PSYR223283 PSPTO_0086PSPTO_0076PSPTO_3319PSPTO_0089PSPTO_0077PSPTO_0080PSPTO_0085
PSYR205918 PSYR_0222PSYR_0212PSYR_3154PSYR_0224PSYR_0213PSYR_0216PSYR_0221
PSTU379731 PST_0473PST_0462PST_0107PST_0463PST_0466PST_0472
PSP312153 PNUC_1733PNUC_1079PNUC_2012PNUC_1734PNUC_1080PNUC_2007PNUC_1742
PSP296591 BPRO_0948BPRO_1336BPRO_3979BPRO_3802BPRO_1339BPRO_0217BPRO_3180
PPUT76869 PPUTGB1_5335PPUTGB1_5343PPUTGB1_5333PPUTGB1_5342PPUTGB1_5340PPUTGB1_5336
PPUT351746 PPUT_5194PPUT_5203PPUT_5192PPUT_5202PPUT_5199PPUT_5195
PPUT160488 PP_5284PP_5295PP_5282PP_5294PP_5291PP_5285
PPRO298386 PBPRA0202PBPRA0197PBPRA0200PBPRA0203PBPRA0198PBPRA0199PBPRA0201
PMUL272843 PM1152PM1875PM1155PM1151PM1876PM1877PM1153
PMEN399739 PMEN_4376PMEN_4387PMEN_4374PMEN_4386PMEN_4383PMEN_4377
PLUM243265 PLU4865PLU4871PLU4868PLU4864PLU4870PLU4869PLU4866
PING357804 PING_0056PING_3652PING_0059PING_0055PING_3479PING_3478PING_0057
PHAL326442 PSHAA2643PSHAA2789PSHAA2645PSHAA2642PSHAA2788PSHAA2787PSHAA2644
PFLU220664 PFL_6051PFL_6060PFL_6049PFL_6059PFL_6056PFL_6052
PFLU216595 PFLU5982PFLU5992PFLU4083PFLU5980PFLU5991PFLU5988PFLU5983
PFLU205922 PFL_5539PFL_5548PFL_5537PFL_5547PFL_5544PFL_5540
PENT384676 PSEEN5431PSEEN5440PSEEN5427PSEEN5439PSEEN5436PSEEN5432
PCAR338963 PCAR_0065PCAR_1284PCAR_2878PCAR_2030PCAR_1325PCAR_2011
PATL342610 PATL_0046PATL_4283PATL_0044PATL_0048PATL_4282PATL_4281PATL_0045
PAER208964 PA5319PA5335PA5316PA5334PA5331PA5320
PAER208963 PA14_70230PA14_70430PA14_70190PA14_70420PA14_70370PA14_70240
OCAR504832 OCAR_6364OCAR_4849OCAR_4063OCAR_4413OCAR_7569OCAR_4489
NOCE323261 NOC_0236NOC_0956NOC_2640NOC_2442NOC_2998NOC_2992
NMUL323848 NMUL_A2138NMUL_A0065NMUL_A1117NMUL_A2139NMUL_A0066NMUL_A0225NMUL_A2137
NMEN272831 NMC1174NMC0661NMC1851NMC1430NMC0345NMC1576
NMEN122587 NMA1448NMA0916NMA2166NMA1702NMA0582NMA1916
NMEN122586 NMB_1038NMB_0711NMB_0321NMB_1499NMB_1874NMB_1658
NGON242231 NGO0681NGO0286NGO1680NGO0958NGO0029NGO1307
NEUT335283 NEUT_0782NEUT_2372NEUT_1933NEUT_0781NEUT_0308NEUT_2050NEUT_0783
NEUR228410 NE1464NE2472NE1465NE0276NE1734NE1463
MXAN246197 MXAN_1952MXAN_4706MXAN_6526MXAN_2004MXAN_4633MXAN_4395
MSUC221988 MS0253MS1936MS1942MS0252MS0251MS1938
MSP400668 MMWYL1_0624MMWYL1_4362MMWYL1_0620MMWYL1_0629MMWYL1_4361MMWYL1_0619MMWYL1_0623
MPET420662 MPE_A2695MPE_A2708MPE_A0501MPE_A1117MPE_A2705MPE_A0088MPE_A2571
MFLA265072 MFLA_0315MFLA_0046MFLA_2257MFLA_0312MFLA_0043MFLA_2485MFLA_0314
MAQU351348 MAQU_3564MAQU_0549MAQU_3502MAQU_3565MAQU_0548MAQU_0546MAQU_3563
LPNE400673 LPC_1989LPC_1495LPC_2865LPC_1496LPC_0672LPC_1990
LPNE297246 LPP2553LPP1993LPP0544LPP1994LPP1206LPP2552
LPNE297245 LPL2409LPL1988LPL0520LPL1989LPL1212LPL2408
LPNE272624 LPG2489LPG2011LPG0479LPG2012LPG1204LPG2488
LMON265669 LMOF2365_1569LMOF2365_1856LMOF2365_1992LMOF2365_1247LMOF2365_1859LMOF2365_1853
LINN272626 LIN1584LIN1942LIN2076LIN1201LIN1945LIN1939
LCHO395495 LCHO_0695LCHO_0708LCHO_0542LCHO_0753LCHO_0705LCHO_4049LCHO_2645
KPNE272620 GKPORF_B3341GKPORF_B3353GKPORF_B3344GKPORF_B3340GKPORF_B3347GKPORF_B3346GKPORF_B3342
JSP375286 MMA_2551MMA_1329MMA_3231MMA_2552MMA_1332MMA_0191MMA_0826
ILOI283942 IL0240IL2421IL0237IL0241IL2425IL2426IL0239
HSOM228400 HSM_0009HSM_0325HSM_0006HSM_0010HSM_0326HSM_0008
HSOM205914 HS_0144HS_1293HS_0141HS_0145HS_1292HS_0143
HINF71421 HI_0952HI_0467HI_0955HI_0951HI_0273HI_0272HI_0953
HINF374930 CGSHIEE_07200CGSHIEE_00655CGSHIEE_07185CGSHIEE_07205CGSHIEE_01685CGSHIEE_01690CGSHIEE_07195
HINF281310 NTHI1125NTHI0598NTHI1128NTHI1124NTHI0381NTHI0380NTHI1126
HHAL349124 HHAL_2301HHAL_0975HHAL_2314HHAL_0973HHAL_2292HHAL_2299
HDUC233412 HD_0732HD_0302HD_0735HD_0731HD_0301HD_1759HD_0733
HCHE349521 HCH_01020HCH_06336HCH_06098HCH_01019HCH_06338HCH_06340HCH_01021
HARS204773 HEAR2468HEAR2129HEAR2984HEAR2469HEAR2126HEAR0162HEAR0843
GURA351605 GURA_4138GURA_3163GURA_3410GURA_2256GURA_2069GURA_2927
GSUL243231 GSU_0386GSU_2239GSU_0951GSU_1795GSU_1637GSU_1124
ESP42895 ENT638_0101ENT638_0095ENT638_0098ENT638_0102ENT638_0096ENT638_0097ENT638_0100
EFER585054 EFER_3929EFER_3936EFER_3932EFER_3928EFER_3935EFER_3934EFER_3930
ECOO157 RADCYICCTTKRPMBRPHPYREDFP
ECOL83334 ECS4513ECS4519ECS4516ECS4512ECS4518ECS4517ECS4514
ECOL585397 ECED1_4322ECED1_4328ECED1_4325ECED1_4320ECED1_4327ECED1_4326ECED1_4323
ECOL585057 ECIAI39_4156ECIAI39_4163ECIAI39_4159ECIAI39_4155ECIAI39_4162ECIAI39_4161ECIAI39_4157
ECOL585056 ECUMN_4153ECUMN_4159ECUMN_4156ECUMN_4151ECUMN_4158ECUMN_4157ECUMN_4154
ECOL585055 EC55989_4103EC55989_4109EC55989_4106EC55989_4101EC55989_4108EC55989_4107EC55989_4104
ECOL585035 ECS88_4052ECS88_4058ECS88_4055ECS88_4051ECS88_4057ECS88_4056ECS88_4053
ECOL585034 ECIAI1_3809ECIAI1_3815ECIAI1_3812ECIAI1_3807ECIAI1_3814ECIAI1_3813ECIAI1_3810
ECOL481805 ECOLC_0073ECOLC_0067ECOLC_0070ECOLC_0074ECOLC_0068ECOLC_0069ECOLC_0072
ECOL469008 ECBD_0088ECBD_0082ECBD_0085ECBD_0089ECBD_0083ECBD_0084ECBD_0087
ECOL439855 ECSMS35_3973ECSMS35_3979ECSMS35_3976ECSMS35_3972ECSMS35_3978ECSMS35_3977ECSMS35_3974
ECOL413997 ECB_03495ECB_03501ECB_03498ECB_03494ECB_03500ECB_03499ECB_03496
ECOL409438 ECSE_3918ECSE_3924ECSE_3921ECSE_3917ECSE_3923ECSE_3922ECSE_3919
ECOL405955 APECO1_2823APECO1_2817APECO1_2820APECO1_2818APECO1_2819APECO1_2822
ECOL364106 UTI89_C4182UTI89_C4188UTI89_C4185UTI89_C4181UTI89_C4187UTI89_C4186UTI89_C4183
ECOL362663 ECP_3736ECP_3742ECP_3739ECP_3735ECP_3741ECP_3740ECP_3737
ECOL331111 ECE24377A_4139ECE24377A_4145ECE24377A_4142ECE24377A_4138ECE24377A_4144ECE24377A_4143ECE24377A_4140
ECOL316407 ECK3628:JW5643:B3638ECK3634:JW3619:B3644ECK3631:JW5641:B3641ECK3627:JW3612:B3637ECK3632:JW3617:B3642ECK3629:JW5642:B3639
ECOL199310 C4462C4468C4465C4461C4467C4466C4463
ECAR218491 ECA0145ECA0130ECA0142ECA0146ECA0140ECA0141ECA0144
DPSY177439 DP0715DP2862DP1683DP1273DP2916DP1673
DNOD246195 DNO_0822DNO_0665DNO_0060DNO_0664DNO_0919DNO_0823
DARO159087 DARO_3142DARO_3848DARO_0627DARO_3143DARO_3851DARO_0122DARO_3141
CVIO243365 CV_3079CV_3850CV_3456CV_3847CV_4248CV_3080
CSP501479 CSE45_3579CSE45_1805CSE45_0605CSE45_3415CSE45_1764CSE45_4341
CSAL290398 CSAL_2972CSAL_3207CSAL_2985CSAL_2971CSAL_3206CSAL_3204CSAL_2981
CPSY167879 CPS_0107CPS_0181CPS_0209CPS_0112CPS_0113CPS_0182
CJAP155077 CJA_3522CJA_0202CJA_3526CJA_3515CJA_0203CJA_3528CJA_3523
BWEI315730 BCERKBAB4_4299BCERKBAB4_3696BCERKBAB4_3681BCERKBAB4_4325BCERKBAB4_3709BCERKBAB4_3692
BVIE269482 BCEP1808_2579BCEP1808_0915BCEP1808_3181BCEP1808_2580BCEP1808_0914BCEP1808_2592
BTHU412694 BALH_4047BALH_3504BALH_3489BALH_4073BALH_3512BALH_3500
BTHU281309 BT9727_4187BT9727_3614BT9727_3599BT9727_4218BT9727_0532BT9727_3610
BTHA271848 BTH_I0781BTH_I1585BTH_I0158BTH_I0780BTH_I1584BTH_I0768
BSUB BSU28040BSU15660BSU15820BSU28370BSU15560BSU15700
BSP376 BRADO0713BRADO3316BRADO0635BRADO0173BRADO0748BRADO0077
BSP36773 BCEP18194_A5833BCEP18194_A4106BCEP18194_A6449BCEP18194_A5834BCEP18194_A4105BCEP18194_A5846
BPSE320373 BURPS668_0979BURPS668_2950BURPS668_0183BURPS668_0978BURPS668_2951BURPS668_0965
BPSE320372 BURPS1710B_A1193BURPS1710B_A3307BURPS1710B_A0402BURPS1710B_A1192BURPS1710B_A3308BURPS1710B_A1179
BPSE272560 BPSL0917BPSL2564BPSL0198BPSL0916BPSL2565BPSL0904
BPET94624 BPET3149BPET2267BPET0432BPET3313BPET2268BPET0423BPET2816
BPER257313 BP1235BP1587BP0381BP2051BP1588BP0370BP1751
BPAR257311 BPP1850BPP2996BPP4049BPP1737BPP2995BPP4060BPP1982
BMAL320389 BMA10247_2099BMA10247_1965BMA10247_3440BMA10247_2100BMA10247_1966BMA10247_2114
BMAL320388 BMASAVP1_A2646BMASAVP1_A0814BMASAVP1_A2908BMASAVP1_A2647BMASAVP1_A0813BMASAVP1_A2660
BMAL243160 BMA_2230BMA_2097BMA_3247BMA_2231BMA_2098BMA_2244
BCER572264 BCA_4566BCA_3973BCA_3958BCA_4596BCA_0656BCA_3969
BCER405917 BCE_4545BCE_3916BCE_3900BCE_4586BCE_0690BCE_3912
BCER288681 BCE33L4198BCE33L3632BCE33L3617BCE33L4234BCE33L0532BCE33L3628
BCEN331272 BCEN2424_2501BCEN2424_0998BCEN2424_3098BCEN2424_2502BCEN2424_0997BCEN2424_2514
BCEN331271 BCEN_1890BCEN_0519BCEN_2484BCEN_1891BCEN_0518BCEN_1903
BBRO257310 BB3258BB2962BB4522BB3371BB2961BB4533BB2170
BANT592021 BAA_4704BAA_4035BAA_4020BAA_4732BAA_4044BAA_4031
BANT568206 BAMEG_4721BAMEG_0620BAMEG_0635BAMEG_4751BAMEG_0610BAMEG_0624
BANT261594 GBAA4685GBAA4011GBAA3996GBAA4715GBAA4021GBAA4007
BANT260799 BAS4351BAS3724BAS3709BAS4377BAS3733BAS3720
BAMB398577 BAMMC406_2419BAMMC406_0870BAMMC406_3007BAMMC406_2420BAMMC406_0869BAMMC406_2432
BAMB339670 BAMB_2548BAMB_0858BAMB_3145BAMB_2549BAMB_0857BAMB_2561
ASP76114 EBA840C1A25EBA6247EBA4482C1A232EBA3324EBA838
ASP62928 AZO1137AZO3960AZO1136AZO3963AZO3663AZO1138
ASP232721 AJS_3450AJS_0926AJS_0589AJS_3384AJS_0923AJS_0234AJS_1001
ASAL382245 ASA_4229ASA_0100ASA_4232ASA_4228ASA_0101ASA_0102ASA_4230
APLE434271 APJL_2017APJL_0056APJL_2014APJL_2018APJL_0055APJL_0333APJL_2016
APLE416269 APL_1970APL_0056APL_1967APL_1971APL_0055APL_0318APL_1969
AHYD196024 AHA_0160AHA_4225AHA_0157AHA_0161AHA_4224AHA_4223AHA_0159
AEHR187272 MLG_2664MLG_2445MLG_1059MLG_2641MLG_2446MLG_0260MLG_2847
ABOR393595 ABO_0214ABO_0205ABO_0209ABO_0215ABO_0206ABO_0207ABO_0213
ABAU360910 BAV2405BAV1937BAV3169BAV2485BAV1936BAV3180BAV1409
AAVE397945 AAVE_3773AAVE_3582AAVE_4136AAVE_3428AAVE_3579AAVE_0289AAVE_1328
AAEO224324 AQ_1610AQ_771AQ_2179AQ_924AQ_1907AQ_815


Organism features enriched in list (features available for 179 out of the 191 orgs in the list)
Feature    Pvalue       Num occurrences in list  Total num occurrences  
Disease:Anthrax 0.008680944
Disease:Bubonic_plague 0.000789866
Disease:Dysentery 0.000789866
Disease:Gastroenteritis 0.00062301013
Disease:Legionnaire's_disease 0.008680944
Endospores:No 1.135e-1130211
GC_Content_Range4:0-40 8.451e-1723213
GC_Content_Range4:40-60 2.023e-9101224
GC_Content_Range4:60-100 0.007975855145
GC_Content_Range7:30-40 3.873e-923166
GC_Content_Range7:50-60 8.501e-1060107
GC_Content_Range7:60-70 0.001203855134
Genome_Size_Range5:0-2 3.504e-216155
Genome_Size_Range5:2-4 5.948e-638197
Genome_Size_Range5:4-6 2.804e-24110184
Genome_Size_Range5:6-10 0.00045472547
Genome_Size_Range9:1-2 7.292e-166128
Genome_Size_Range9:2-3 0.000127021120
Genome_Size_Range9:4-5 2.924e-75196
Genome_Size_Range9:5-6 1.470e-145988
Genome_Size_Range9:6-8 0.00006102338
Gram_Stain:Gram_Neg 1.264e-23155333
Gram_Stain:Gram_Pos 3.303e-1412150
Habitat:Multiple 0.006891166178
Habitat:Specialized 0.0036427853
Motility:No 2.204e-1412151
Motility:Yes 1.906e-14124267
Optimal_temp.:- 0.002847393257
Optimal_temp.:35-37 1.578e-71313
Optimal_temp.:37 0.004233022106
Oxygen_Req:Anaerobic 1.472e-98102
Oxygen_Req:Facultative 3.037e-993201
Pathogenic_in:Animal 0.00293433066
Pathogenic_in:No 0.000012047226
Pathogenic_in:Plant 0.00062131115
Shape:Coccus 4.447e-8682
Shape:Rod 2.026e-21156347
Shape:Spiral 0.0000403134
Temp._range:Hyperthermophilic 0.0019173123
Temp._range:Mesophilic 0.0002079160473
Temp._range:Psychrophilic 0.004191079



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ORGANISMS CONTAINING AT MOST 1 GENES FROM THE GROUP:

Total number of orgs: 90
Effective number of orgs (counting one per cluster within 468 clusters): 74

Organism list
Homologs in each organism in the list
Features enriched in organism list


Follow (ncbi) link, when present, to find the set of organism features for each organism
Org ID  Org Name  # genes in group found in org  
WSUC273121 ncbi Wolinella succinogenes DSM 17401
WPIP955 Wolbachia pipientis1
WPIP80849 Wolbachia endosymbiont of Brugia malayi0
UURE95667 Ureaplasma urealyticum serovar 130
UURE95664 Ureaplasma urealyticum serovar 100
UPAR505682 ncbi Ureaplasma parvum serovar 3 str. ATCC 278150
TPAL243276 ncbi Treponema pallidum pallidum Nichols0
TDEN326298 ncbi Sulfurimonas denitrificans DSM 12511
TDEN243275 ncbi Treponema denticola ATCC 354051
SSUI391295 ncbi Streptococcus suis 05ZYH331
RRIC452659 ncbi Rickettsia rickettsii Iowa1
RRIC392021 ncbi Rickettsia rickettsii Sheila Smith1
RMAS416276 ncbi Rickettsia massiliae MTU51
RFEL315456 ncbi Rickettsia felis URRWXCal21
RCON272944 ncbi Rickettsia conorii Malish 71
RCAN293613 ncbi Rickettsia canadensis McKiel1
RBEL391896 ncbi Rickettsia bellii OSU 85-3891
RBEL336407 ncbi Rickettsia bellii RML369-C1
RAKA293614 ncbi Rickettsia akari Hartford1
PPEN278197 ncbi Pediococcus pentosaceus ATCC 257451
PMAR167539 ncbi Prochlorococcus marinus marinus CCMP13751
PAST100379 Onion yellows phytoplasma0
NSEN222891 ncbi Neorickettsia sennetsu Miyayama0
NPHA348780 ncbi Natronomonas pharaonis DSM 21601
MSYN262723 ncbi Mycoplasma synoviae 531
MPUL272635 ncbi Mycoplasma pulmonis UAB CTIP1
MPNE272634 ncbi Mycoplasma pneumoniae M1290
MPEN272633 ncbi Mycoplasma penetrans HF-20
MMYC272632 ncbi Mycoplasma mycoides mycoides SC str. PG10
MMOB267748 ncbi Mycoplasma mobile 163K1
MMAR444158 ncbi Methanococcus maripaludis C61
MMAR426368 ncbi Methanococcus maripaludis C71
MMAR402880 ncbi Methanococcus maripaludis C51
MMAR267377 ncbi Methanococcus maripaludis S21
MLAB410358 ncbi Methanocorpusculum labreanum Z1
MJAN243232 ncbi Methanocaldococcus jannaschii DSM 26611
MHYO295358 ncbi Mycoplasma hyopneumoniae 2321
MHYO262722 ncbi Mycoplasma hyopneumoniae 74481
MHYO262719 ncbi Mycoplasma hyopneumoniae J1
MGEN243273 ncbi Mycoplasma genitalium G370
MFLO265311 ncbi Mesoplasma florum L11
MCAP340047 ncbi Mycoplasma capricolum capricolum ATCC 273430
MART243272 ncbi Mycoplasma arthritidis 158L3-11
MAEO419665 ncbi Methanococcus aeolicus Nankai-31
LPLA220668 ncbi Lactobacillus plantarum WCFS11
LDEL390333 ncbi Lactobacillus delbrueckii bulgaricus ATCC 118420
LDEL321956 ncbi Lactobacillus delbrueckii bulgaricus ATCC BAA-3650
LACI272621 ncbi Lactobacillus acidophilus NCFM1
HWAL362976 ncbi Haloquadratum walsbyi DSM 167901
HSP64091 ncbi Halobacterium sp. NRC-11
HSAL478009 ncbi Halobacterium salinarum R11
HPYL85963 ncbi Helicobacter pylori J990
HPYL357544 ncbi Helicobacter pylori HPAG10
HPY ncbi Helicobacter pylori 266950
HMUK485914 ncbi Halomicrobium mukohataei DSM 122861
HMAR272569 ncbi Haloarcula marismortui ATCC 430491
HHEP235279 ncbi Helicobacter hepaticus ATCC 514491
HACI382638 ncbi Helicobacter acinonychis Sheeba0
ERUM302409 ncbi Ehrlichia ruminantium Gardel1
ERUM254945 ncbi Ehrlichia ruminantium Welgevonden1
ECHA205920 ncbi Ehrlichia chaffeensis Arkansas0
ECAN269484 ncbi Ehrlichia canis Jake1
CSUL444179 ncbi Candidatus Sulcia muelleri GWSS1
CPNE182082 ncbi Chlamydophila pneumoniae TW-1831
CPNE138677 ncbi Chlamydophila pneumoniae J1381
CPNE115713 ncbi Chlamydophila pneumoniae CWL0291
CPNE115711 ncbi Chlamydophila pneumoniae AR391
CMET456442 ncbi Candidatus Methanoregula boonei 6A81
CJEJ407148 ncbi Campylobacter jejuni jejuni 811161
CJEJ360109 ncbi Campylobacter jejuni doylei 269.971
CJEJ354242 ncbi Campylobacter jejuni jejuni 81-1761
CJEJ195099 ncbi Campylobacter jejuni RM12211
CJEJ192222 ncbi Campylobacter jejuni jejuni NCTC 111681
CHOM360107 ncbi Campylobacter hominis ATCC BAA-3810
CFET360106 ncbi Campylobacter fetus fetus 82-401
CCUR360105 ncbi Campylobacter curvus 525.921
CCON360104 ncbi Campylobacter concisus 138261
CABO218497 ncbi Chlamydophila abortus S26/31
BXEN266265 ncbi Burkholderia xenovorans LB4000
BGAR290434 ncbi Borrelia garinii PBi1
BBUR224326 ncbi Borrelia burgdorferi B311
BAPH372461 ncbi Buchnera aphidicola Cc (Cinara cedri)1
BAPH198804 ncbi Buchnera aphidicola Sg (Schizaphis graminum)1
BAFZ390236 ncbi Borrelia afzelii PKo1
AYEL322098 ncbi Aster yellows witches-broom phytoplasma AYWB0
AURANTIMONAS Aurantimonas manganoxydans SI85-9A10
APHA212042 ncbi Anaplasma phagocytophilum HZ1
AMAR234826 ncbi Anaplasma marginale St. Maries0
ALAI441768 ncbi Acholeplasma laidlawii PG-8A1
ABUT367737 ncbi Arcobacter butzleri RM40181


Names of the homologs of the genes in the group in each of these orgs
  EG11312   EG11192   EG11191   EG10886   EG10863   EG10808   EG10004   
WSUC273121 WS0328
WPIP955 WD_0391
WPIP80849
UURE95667
UURE95664
UPAR505682
TPAL243276
TDEN326298 TMDEN_1602
TDEN243275 TDE_1086
SSUI391295 SSU05_1007
RRIC452659 RRIOWA_1155
RRIC392021 A1G_05365
RMAS416276 RMA_1006
RFEL315456 RF_0403
RCON272944 RC0975
RCAN293613 A1E_01605
RBEL391896 A1I_03465
RBEL336407 RBE_0607
RAKA293614 A1C_04950
PPEN278197 PEPE_0827
PMAR167539 PRO_0933
PAST100379
NSEN222891
NPHA348780 NP1256A
MSYN262723 MS53_0066
MPUL272635 MYPU_6960
MPNE272634
MPEN272633
MMYC272632
MMOB267748 MMOB4150
MMAR444158 MMARC6_1182
MMAR426368 MMARC7_0736
MMAR402880 MMARC5_0085
MMAR267377 MMP1492
MLAB410358 MLAB_0317
MJAN243232 MJ_1109
MHYO295358 MHP259
MHYO262722 MHP7448_0122
MHYO262719 MHJ_0118
MGEN243273
MFLO265311 MFL227
MCAP340047
MART243272 MART0004
MAEO419665 MAEO_0561
LPLA220668 LP_1614
LDEL390333
LDEL321956
LACI272621 LBA0939
HWAL362976 HQ3229A
HSP64091 VNG2118G
HSAL478009 OE3953R
HPYL85963
HPYL357544
HPY
HMUK485914 HMUK_0849
HMAR272569 RRNAC2521
HHEP235279 HH_1289
HACI382638
ERUM302409 ERGA_CDS_05500
ERUM254945 ERWE_CDS_05610
ECHA205920
ECAN269484 ECAJ_0542
CSUL444179 SMGWSS_050
CPNE182082 CPB0337
CPNE138677 CPJ0327
CPNE115713 CPN0327
CPNE115711 CP_0430
CMET456442 MBOO_0841
CJEJ407148 C8J_0423
CJEJ360109 JJD26997_1489
CJEJ354242 CJJ81176_0475
CJEJ195099 CJE_0500
CJEJ192222 CJ0450C
CHOM360107
CFET360106 CFF8240_0971
CCUR360105 CCV52592_0722
CCON360104 CCC13826_1345
CABO218497 CAB441
BXEN266265
BGAR290434 BG0843
BBUR224326 BB_0818
BAPH372461 BCC_052
BAPH198804 BUSG079
BAFZ390236 BAPKO_0871
AYEL322098
AURANTIMONAS
APHA212042 APH_0359
AMAR234826
ALAI441768 ACL_0360
ABUT367737 ABU_1793


Organism features enriched in list (features available for 84 out of the 90 orgs in the list)
Feature    Pvalue       Num occurrences in list  Total num occurrences  
Arrangment:Pairs 8.122e-81112
Arrangment:Singles 0.003699752286
Disease:Pharyngitis 0.002014758
Disease:Rocky_Mountain_Spotted_Fever 0.002900033
Disease:bronchitis_and_pneumonitis 0.002014758
Endospores:No 0.003579141211
GC_Content_Range4:0-40 2.938e-1361213
GC_Content_Range4:40-60 0.000069117224
GC_Content_Range4:60-100 6.464e-66145
GC_Content_Range7:0-30 2.365e-92347
GC_Content_Range7:30-40 0.000178138166
GC_Content_Range7:50-60 2.268e-62107
GC_Content_Range7:60-70 0.00003346134
Genome_Size_Range5:0-2 1.757e-3169155
Genome_Size_Range5:2-4 0.000033713197
Genome_Size_Range5:4-6 3.124e-141184
Genome_Size_Range5:6-10 0.0041751147
Genome_Size_Range9:0-1 2.622e-91727
Genome_Size_Range9:1-2 3.092e-1852128
Genome_Size_Range9:3-4 0.0013509377
Genome_Size_Range9:4-5 1.457e-6196
Gram_Stain:Gram_Pos 2.967e-66150
Habitat:Host-associated 5.262e-852206
Habitat:Multiple 0.000368313178
Optimal_temp.:37 0.000138428106
Optimal_temp.:42 0.002900033
Oxygen_Req:Aerobic 0.008751818185
Oxygen_Req:Microaerophilic 3.752e-61118
Pathogenic_in:No 0.003451322226
Pathogenic_in:Ruminant 0.002900033
Pathogenic_in:Swine 0.001745245
Salinity:Extreme_halophilic 0.000875657
Shape:Coccus 0.0025880482
Shape:Rod 1.860e-1122347
Shape:Sphere 1.753e-101519
Shape:Spiral 3.899e-112134



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ORGANISMS ENRICHED FOR GROUP:




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ORGANISMS DEPLETED FOR GROUP:




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PHYLOGENETIC PROFILE SIMILARITY WITH KNOWN PATHWAYS:

Pathways or complexes with absolute value of Pearson coefficient with respect to candidate larger than 0.4 are listed below
The candidate is assumed to exist in orgs listed in section List of organisms containing most genes from the group


Pathway or complex  # Orgs containing it  # of those orgs also containing candidate  Pearson Coeff  
GLYCOCAT-PWY (glycogen degradation I)2461630.6237
PWY0-1241 (ADP-L-glycero-β-D-manno-heptose biosynthesis)2181520.6216
AST-PWY (arginine degradation II (AST pathway))1201020.5757
COBALSYN-PWY (adenosylcobalamin salvage from cobinamide I)1951350.5647
PWY-5111 (CMP-KDO biosynthesis II (from D-arabinose 5-phosphate))3001720.5576
PWY-5918 (heme biosynthesis I)2721610.5448
HEME-BIOSYNTHESIS-II (heme biosynthesis from uroporphyrinogen-III I)2861630.5262
KDO-LIPASYN-PWY (KDO2-lipid A biosynthesis I)2251410.5220
PWY-1269 (CMP-KDO biosynthesis I)3251740.5182
PWY4FS-7 (phosphatidylglycerol biosynthesis I (plastidic))2911630.5149
PWY-5386 (methylglyoxal degradation I)3051670.5118
LIPA-CORESYN-PWY (Lipid A-core biosynthesis)1761200.5107
PWY0-1319 (CDP-diacylglycerol biosynthesis II)2961640.5107
GLUCARDEG-PWY (D-glucarate degradation I)1521090.5058
PHOSLIPSYN-PWY (phospholipid biosynthesis I)2901610.5031
ECASYN-PWY (enterobacterial common antigen biosynthesis)1911230.4866
3-HYDROXYPHENYLACETATE-DEGRADATION-PWY (4-hydroxyphenylacetate degradation)1491050.4841
PWY-4041 (γ-glutamyl cycle)2791540.4793
NAGLIPASYN-PWY (lipid IVA biosynthesis)3481750.4789
PWY-5913 (TCA cycle variation IV)3011600.4718
LIPASYN-PWY (phospholipases)2121290.4703
GLUCARGALACTSUPER-PWY (superpathway of D-glucarate and D-galactarate degradation)135970.4699
PWY-6196 (serine racemization)102810.4679
PWY-5755 (4-hydroxybenzoate biosynthesis II (bacteria and fungi))81690.4572
GLUTATHIONESYN-PWY (glutathione biosynthesis)3391690.4548
GLUCONSUPER-PWY (D-gluconate degradation)2291330.4534
GALACTARDEG-PWY (D-galactarate degradation I)1511020.4526
ENTNER-DOUDOROFF-PWY (Entner-Doudoroff pathway I)2491400.4524
GLYCOLYSIS-E-D (superpathway of glycolysis and Entner-Doudoroff)2491400.4524
PWY-5148 (acyl-CoA hydrolysis)2271320.4514
GALACTITOLCAT-PWY (galactitol degradation)73640.4505
PWY-5857 (ubiquinone-10 biosynthesis (prokaryotic))1831150.4502
TYRFUMCAT-PWY (tyrosine degradation I)1841150.4471
PWY-6134 (tyrosine biosynthesis IV)89710.4349
DAPLYSINESYN-PWY (lysine biosynthesis I)3421670.4348
PWY-5084 (2-ketoglutarate dehydrogenase complex)3261620.4325
PWY-3162 (tryptophan degradation V (side chain pathway))94730.4297
PWY-5855 (ubiquinone-7 biosynthesis (prokaryotic))1911150.4262
P601-PWY (D-camphor degradation)95730.4249
SULFATE-CYS-PWY (superpathway of sulfate assimilation and cysteine biosynthesis)3651720.4248
POLYISOPRENSYN-PWY (polyisoprenoid biosynthesis (E. coli))116830.4242
PWY-561 (superpathway of glyoxylate cycle)1621030.4233
PYRIDOXSYN-PWY (pyridoxal 5'-phosphate biosynthesis I)4221860.4217
PWY0-981 (taurine degradation IV)106780.4216
KDOSYN-PWY (KDO transfer to lipid IVA I)1801100.4210
PWY0-541 (cyclopropane fatty acid (CFA) biosynthesis)3001520.4182
GLYOXYLATE-BYPASS (glyoxylate cycle)1691050.4165
KDO-NAGLIPASYN-PWY (superpathway of KDO2-lipid A biosynthesis)1791090.4164
PWY-5194 (siroheme biosynthesis)3121550.4132
PWY-5669 (phosphatidylethanolamine biosynthesis I)4161830.4099
SO4ASSIM-PWY (sulfate reduction I (assimilatory))3111540.4084
GLUTDEG-PWY (glutamate degradation II)1941130.4024
CHOLINE-BETAINE-ANA-PWY (choline degradation I)135890.4023
PWY-5340 (sulfate activation for sulfonation)3851740.4010
PWY0-1329 (succinate to cytochrome bo oxidase electron transfer)96710.4008
P184-PWY (protocatechuate degradation I (meta-cleavage pathway))94700.4005



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PAIRWISE GENOME CONTEXT SCORE MATRIX:

  EG11192   EG11191   EG10886   EG10863   EG10808   EG10004   
EG113120.9985970.9992210.999660.9991850.9990160.99967
EG111920.998610.9987680.9997150.9994420.9995
EG111910.9992080.9987110.9992690.99934
EG108860.9985160.9989870.999597
EG108630.999340.998929
EG108080.999263
EG10004



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PAIRWISE BLAST SCORES:

  EG11312   EG11192   EG11191   EG10886   EG10863   EG10808   EG10004   
EG113120.0f0------
EG11192-0.0f0-----
EG11191--0.0f0----
EG10886---0.0f0---
EG10863----0.0f0--
EG10808-----0.0f0-
EG10004------0.0f0



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PATHWAYS OR PROTEIN COMPLEX MATCHES IN TARGET ORG:

For each case, all genes involved in the pathway or complex are listed. For each gene we list: a tag indicating whether the gene is part of the candidate list or not, the average and the minimum scores of the gene to the candidate list, the gene name, and its product names.



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GENOME CONTEXT INFORMATION:

Each row corresponds to a replicon in an organism, each column to a gene in the candidate. The second column indicates whether the organims was included in the list used to compute the genome context scores or not. Some organisms are not included because they are phylogenetically too similar to others already in the list.
The number in the matrix indicate the position of the homolog of the gene in the replicon. All numbers are relative to the smaller one, which is assigned a position of zero. Two columns with the same number indicate that the two genes matched the same gene in that organism.

Genome browser links for gene clusters

The links below opens a genome browser BioCyc page for each cluster of genes in the target genome. These pages shows the central gene of the cluster in the target genome and its best homolog in the reference genomes, for the genomes that contain homologs for at least 75% of the genes in the group. Only one genome per phylogenetic cluster of organisms is shown, to keep the list smaller.

EG10004 EG10808 EG10863 EG10886 EG11191 EG11192 EG11312 (centered at EG11191)


ORG:REPLICON:CIRC?\GENE  IN REF LIST  EG11312   EG11192   EG11191   EG10886   EG10863   EG10808   EG10004   
329/623327/623145/623412/623406/623401/623419/623
AAEO224324:0:Tyes58801000-10780428
AAUR290340:2:Tyes---11670--
AAVE397945:0:Tyes3424323737813089323401023
ABAC204669:0:Tyes-2180--0-2176
ABAU360910:0:Tyes10045251766108252417770
ABOR393595:0:Tyes90410128
ABUT367737:0:Tyes---0---
ACAU438753:0:Tyes-3823-03795-3408
ACEL351607:0:Tyes----393-0
ACRY349163:8:Tyes11840-1266216-280
ADEH290397:0:Tyes-240--1002-0
AEHR187272:0:Tyes238921707962366217102572
AFER243159:0:Tyes22042010-0314-2205
AFUL224325:0:Tyes----01235-
AHYD196024:0:Tyes3392304392239212
ALAI441768:0:Tyes0------
AMAR329726:9:Tyes----27072920
AMET293826:0:Tyes12981795--031481791
ANAE240017:0:Tyes---01602212-
AORE350688:0:Tyes1201859--0-863
APER272557:0:Tyes----0940-
APHA212042:0:Tyes---0---
APLE416269:0:Tyes195911956196002701958
APLE434271:0:Tno198111978198202751980
ASAL382245:5:Tyes3985039883984123986
ASP1667:3:Tyes--025581206-871
ASP232721:2:Tyes311968335030586800758
ASP62928:0:Tyes12860-0286325622
ASP62977:0:Tyes2860--414032272859
ASP76114:2:Tyes18623187214086514570
AVAR240292:3:Tyes---0254022263684
BABO262698:0:Tno------0
BABO262698:1:Tno-303-17500--
BAFZ390236:2:Fyes-0-----
BAMB339670:3:Tno17391233817400-1752
BAMB398577:3:Tno15801216815810-1593
BAMY326423:0:Tyes9590-16994-4
BANT260799:0:Tno63915-06672411
BANT261594:2:Tno66015-06882411
BANT568206:2:Tyes402510-254052014
BANT592021:2:Tno67215-06982411
BAPH198804:0:Tyes---0---
BAPH372461:0:Tyes---0---
BBAC264462:0:Tyes-536--15930-
BBAC360095:0:Tyes704--0--1185
BBRO257310:0:Tyes10867862372119878523830
BBUR224326:21:Fno-0-----
BCAN483179:0:Tno------0
BCAN483179:1:Tno-277-18180--
BCEN331271:2:Tno13951198813960-1408
BCEN331272:3:Tyes15011209615020-1514
BCER226900:1:Tyes-15-06302511
BCER288681:0:Tno36643100-3085370203096
BCER315749:1:Tyes6364--66780
BCER405917:1:Tyes36473041-3025368203037
BCER572264:1:Tno38393258-3243386803254
BCIC186490:0:Tyes-1-0-24
BCLA66692:0:Tyes306---345-0
BFRA272559:1:Tyes-2976-1987-02333
BFRA295405:0:Tno-3242-1947-02508
BGAR290434:2:Fyes-0-----
BHAL272558:0:Tyes5344--572-0
BHEN283166:0:Tyes752--1433--0
BHER314723:0:Fyes-6----0
BJAP224911:0:Fyes-3948-05178025604
BLIC279010:0:Tyes112811--1179015
BLON206672:0:Tyes----0496-
BMAL243160:1:Tno119010511201-132
BMAL320388:1:Tno17851204417860-1799
BMAL320389:1:Tyes131014511321-146
BMEL224914:0:Tno------0
BMEL224914:1:Tno-1454-01763--
BMEL359391:0:Tno------0
BMEL359391:1:Tno-286-16840--
BOVI236:0:Tyes------0
BOVI236:1:Tyes---15770--
BPAR257311:0:Tno104--011922230234
BPER257313:0:Tyes7751093111498109401235
BPET94624:0:Tyes2755185892919185902412
BPSE272560:1:Tyes719237807182379-706
BPSE320372:1:Tno787278307862784-773
BPSE320373:1:Tno775266507742666-761
BPUM315750:0:Tyes97210--1019014
BQUI283165:0:Tyes527--1097--0
BSP107806:2:Tyes---0-465-
BSP36773:2:Tyes17671238517680-1780
BSP376:0:Tyes5903068-517936210
BSUB:0:Tyes129211-271329015
BSUI204722:0:Tyes------0
BSUI204722:1:Tyes-278-17770--
BSUI470137:0:Tno------0
BSUI470137:1:Tno-305-16300--
BTHA271848:1:Tno621141206201411-608
BTHE226186:0:Tyes-1115-0--457
BTHU281309:1:Tno36253055-3040365503051
BTHU412694:1:Tno54115-05682311
BTRI382640:1:Tyes---1979--0
BTUR314724:0:Fyes-6----0
BVIE269482:7:Tyes16491224716500-1662
BWEI315730:4:Tyes60715-06352611
CABO218497:0:Tyes---0---
CACE272562:1:Tyes12391708---01712
CAULO:0:Tyes-1551-5130-3614
CBEI290402:0:Tyes0643---512647
CBLO203907:0:Tyes-2-0---
CBLO291272:0:Tno-3-0--1
CBOT36826:1:Tno4944----0
CBOT441770:0:Tyes6344----0
CBOT441771:0:Tno5244----0
CBOT441772:1:Tno4744----0
CBOT498213:1:Tno5824----0
CBOT508765:1:Tyes113753--02107757
CBOT515621:2:Tyes5084----0
CBOT536232:0:Tno5664----0
CBUR227377:1:Tyes-8-07-570
CBUR360115:1:Tno-10-09-624
CBUR434922:2:Tno808800-809801-0
CCAV227941:1:Tyes---320-0-
CCHL340177:0:Tyes610-289--162
CCON360104:2:Tyes---0---
CCUR360105:0:Tyes---0---
CDES477974:0:Tyes14311568--147501564
CDIF272563:1:Tyes01470--2190-1467
CDIP257309:0:Tyes---010021238476
CEFF196164:0:Fyes---014901704796
CFEL264202:1:Tyes---3130--
CFET360106:0:Tyes---0---
CGLU196627:0:Tyes---016141888-
CHUT269798:0:Tyes-0-504--2827
CHYD246194:0:Tyes201142--011471138
CJAP155077:0:Tyes3254032583247132603255
CJEI306537:0:Tyes---13853030845
CJEJ192222:0:Tyes---0---
CJEJ195099:0:Tno---0---
CJEJ354242:2:Tyes---0---
CJEJ360109:0:Tyes---0---
CJEJ407148:0:Tno---0---
CKLU431943:1:Tyes0489--2562-493
CKOR374847:0:Tyes----12260-
CMAQ397948:0:Tyes----0398-
CMET456442:0:Tyes-----0-
CMIC31964:2:Tyes---2710179401722
CMIC443906:2:Tyes---251483201331
CMUR243161:1:Tyes---1300--
CNOV386415:0:Tyes0558----554
CPEL335992:0:Tyes---0--197
CPER195102:1:Tyes4044--552-0
CPER195103:0:Tno3904--494-0
CPER289380:3:Tyes3884--484-0
CPHY357809:0:Tyes-594---0-
CPNE115711:1:Tyes---0---
CPNE115713:0:Tno---0---
CPNE138677:0:Tno---0---
CPNE182082:0:Tno---0---
CPRO264201:0:Fyes11250-6---
CPSY167879:0:Tyes-0741025675
CRUT413404:0:Tyes---185-1870
CSAL290398:0:Tyes124114024023810
CSP501479:6:Fyes------0
CSP501479:7:Fyes163---0--
CSP501479:8:Fyes-1180-0-1140-
CSP78:1:Tyes0------
CSP78:2:Tyes-2362-39980-4940
CSUL444179:0:Tyes---0---
CTEP194439:0:Tyes39938-1382--0
CTET212717:0:Tyes7900----2
CTRA471472:0:Tyes---1240--
CTRA471473:0:Tno---1240--
CVES412965:0:Tyes---155-1560
CVIO243365:0:Tyes0803-39580012211
DARO159087:0:Tyes304937585143050376103048
DDES207559:0:Tyes-2725---30200
DETH243164:0:Tyes991---8277320
DGEO319795:1:Tyes----193902166
DHAF138119:0:Tyes4574--5031280
DNOD246195:0:Tyes742593-0592831743
DOLE96561:0:Tyes50317460--30321423
DPSY177439:2:Tyes02208-10025802262992
DRAD243230:3:Tyes----11230-
DRED349161:0:Tyes8550--993-4
DSHI398580:5:Tyes20590-10701954-1464
DSP216389:0:Tyes886---717-0
DSP255470:0:Tno903---729-0
DVUL882:1:Tyes-0---20352442
ECAN269484:0:Tyes---0---
ECAR218491:0:Tyes1501216101114
ECOL199310:0:Tno1740652
ECOL316407:0:Tno5026-14
ECOL331111:6:Tno1740652
ECOL362663:0:Tno1740652
ECOL364106:1:Tno1740652
ECOL405955:2:Tyes063-541
ECOL409438:6:Tyes1740652
ECOL413997:0:Tno1740652
ECOL439855:4:Tno1740652
ECOL469008:0:Tno6037125
ECOL481805:0:Tno6037125
ECOL585034:0:Tno2850763
ECOL585035:0:Tno1740652
ECOL585055:0:Tno1740652
ECOL585056:2:Tno1740652
ECOL585057:0:Tno1840762
ECOL585397:0:Tno1740652
ECOL83334:0:Tno1740652
ECOLI:0:Tno1740652
ECOO157:0:Tno1740652
EFAE226185:3:Tyes16981894-18810569-
EFER585054:1:Tyes1840762
ELIT314225:0:Tyes313--13520--
ERUM254945:0:Tyes---0---
ERUM302409:0:Tno---0---
ESP42895:1:Tyes6037125
FALN326424:0:Tyes--2694-43404080
FJOH376686:0:Tyes-0-4266--2750
FMAG334413:1:Tyes0328----332
FNOD381764:0:Tyes01524----1316
FNUC190304:0:Tyes-183--0-989
FPHI484022:1:Tyes---19515301650
FRANT:0:Tno---10843920649
FSP106370:0:Tyes----31402629
FSP1855:0:Tyes----387142880
FSUC59374:0:Tyes-0-2018659489780
FTUL351581:0:Tno---1510137399
FTUL393011:0:Tno---1410126381
FTUL393115:0:Tyes---10653910646
FTUL401614:0:Tyes---052194788
FTUL418136:0:Tno---08421085733
FTUL458234:0:Tno---1460132397
GBET391165:0:Tyes1629--5890-132
GFOR411154:0:Tyes-2783-1594--0
GKAU235909:1:Tyes14818--1529012
GMET269799:1:Tyes-4531585-063791
GOXY290633:5:Tyes---01168-2378
GSUL243231:0:Tyes01844562-14011244734
GTHE420246:1:Tyes15023--154807
GURA351605:0:Tyes204910811329-1890855
GVIO251221:0:Tyes2419----0-
HARS204773:0:Tyes216618412659216718380629
HAUR316274:2:Tyes0-----3542
HBUT415426:0:Tyes----4460-
HCHE349521:0:Tyes1514248980514451462
HDUC233412:0:Tyes380138337901271381
HHAL349124:0:Tyes13352-1348013261333
HHEP235279:0:Tyes---0---
HINF281310:0:Tyes69120069469010692
HINF374930:0:Tyes11400113711411941951139
HINF71421:0:Tno67018867366910671
HMAR272569:8:Tyes-----0-
HMOD498761:0:Tyes24241793--0-1798
HMUK485914:1:Tyes-----0-
HNEP81032:0:Tyes-0-13201139-1092
HSAL478009:4:Tyes-----0-
HSOM205914:1:Tyes31159041158-2
HSOM228400:0:Tno332604327-2
HSP64091:2:Tno-----0-
HWAL362976:1:Tyes-----0-
IHOS453591:0:Tyes----0289-
ILOI283942:0:Tyes3223704224122422
JSP290400:1:Tyes-2255-32550-708
JSP375286:0:Tyes240311623085240411650652
KPNE272620:2:Tyes11340762
KRAD266940:2:Fyes---010496191842
LACI272621:0:Tyes------0
LBIF355278:2:Tyes--14080-1358-
LBIF456481:2:Tno--14510-1398-
LBOR355276:1:Tyes---430-0-
LBOR355277:1:Tno---0-221-
LBRE387344:2:Tyes-----11790
LCAS321967:1:Tyes0----189365
LCHO395495:0:Tyes156169021216635362130
LGAS324831:0:Tyes-----0174
LHEL405566:0:Tyes-----3480
LINN272626:1:Tno383767901-0770764
LINT189518:1:Tyes---0-830-
LINT267671:1:Tno---671-0-
LINT363253:3:Tyes-0---687-
LJOH257314:0:Tyes-----3830
LLAC272622:5:Tyes0----64-
LLAC272623:0:Tyes0----61-
LMES203120:1:Tyes-----012
LMON169963:0:Tno312619--0622616
LMON265669:0:Tyes321603739-0606600
LPLA220668:0:Tyes------0
LPNE272624:0:Tno20061529-015307232005
LPNE297245:1:Fno18871464-014656881886
LPNE297246:1:Fyes20101451-014526592009
LPNE400673:0:Tno1290807-214780801291
LREU557436:0:Tyes-----01093
LSAK314315:0:Tyes162----2700
LSPH444177:1:Tyes23410--2431--
LWEL386043:0:Tyes369654--0657651
LXYL281090:0:Tyes---116122910420
MABS561007:1:Tyes---01152-2496
MACE188937:0:Tyes200---01491-
MAEO419665:0:Tyes-----0-
MAER449447:0:Tyes1247--0-2473-
MAQU351348:2:Tyes2986329252987202985
MART243272:0:Tyes---0---
MAVI243243:0:Tyes---3278031951807
MBAR269797:1:Tyes0---1931167-
MBOV233413:0:Tno---1713100101053
MBOV410289:0:Tno---166999301044
MBUR259564:0:Tyes170---0786-
MCAP243233:0:Tyes-659-0657386426
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MMAR368407:0:Tyes0----956-
MMAR394221:0:Tyes0176-12461951--
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MMAR444158:0:Tyes-----0-
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PINT246198:1:Tyes-0-----
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PMAR93060:0:Tyes---703-0-
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ZMOB264203:0:Tyes----0-1203



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