CANDIDATE ID: 362

CANDIDATE ID: 362

NUMBER OF GENES: 7
AVERAGE SCORE:    9.9921738e-1 (range=[0.0,1.0])
AVERAGE MINIMUM BLAST P-VAL:    1.0000000e+0

Gene List
List of organisms containing most genes from the group
    Phylogenetic tree highlighting these organisms (opens new page)
List of organisms containing very few or no genes from the group
List of organisms enriched for group
List of organisms depleted for group
Phylogenetic profile similarity with known pathways
Pairwise genome context scores
Pairwise Blast scores
Pathway or protein complex matches in target organism
Genome context matrix
    Genes and their orthologs in genome browser BioCyc pages



GENE LIST:

- EG11312 (yicR) (b3638)
   Products of gene:
     - EG11312-MONOMER (hypothetical protein)

- EG11191 (slmA) (b3641)
   Products of gene:
     - EG11191-MONOMER (cell division inhibitor)

- EG10886 (rpmB) (b3637)
   Products of gene:
     - EG10886-MONOMER (50S ribosomal subunit protein L28)
     - CPLX0-3962 (50S ribosomal subunit)
     - CPLX0-3964 (ribosome)

- EG10863 (rph) (b3643)
   Products of gene:
     - EG10863-MONOMER (RNase PH monomer)
     - CPLX0-1081 (RNase PH)
       Reactions:
        a tRNA precursor with a short 3' extension + n phosphate  ->  an uncharged tRNA + n a ribonucleoside diphosphate
         In pathways
         PWY0-1479 (tRNA processing pathway)
        a tRNA precursor with a 5' extension and a short 3' extension + n phosphate  ->  a tRNA precursor with a 5' extension + n a nucleoside diphosphate
         In pathways
         PWY0-1479 (tRNA processing pathway)
        phosphate  =  a nucleoside diphosphate

- EG10808 (pyrE) (b3642)
   Products of gene:
     - OROPRIBTRANS-MONOMER (PyrE)
     - OROPRIBTRANS-CPLX (orotate phosphoribosyltransferase)
       Reactions:
        orotidine-5'-phosphate + diphosphate  =  5-phospho-alpha-D-ribose 1-diphosphate + orotate
         In pathways
         PRPP-PWY (superpathway of histidine, purine, and pyrimidine biosynthesis)
         PWY0-162 (pyrimidine ribonucleotides de novo biosynthesis)
         PWY-5686 (uridine-5'-phosphate biosynthesis)

- EG10251 (dut) (b3640)
   Products of gene:
     - DUTP-PYROP-MONOMER (Dut)
     - DUTP-PYROP-CPLX (deoxyuridine triphosphatase)
       Reactions:
        dUTP + H2O  ->  dUMP + diphosphate + H+
         In pathways
         PWY0-166 (pyrimidine deoxyribonucleotides de novo biosynthesis I)
         PWY-6545 (PWY-6545)

- EG10004 (dfp) (b3639)
   Products of gene:
     - EG10004-MONOMER (Dfp)
     - CPLX0-341 (fused 4'-phosphopantothenoylcysteine decarboxylase and phosphopantothenoylcysteine synthetase)
       Reactions:
        D-4'-phosphopantothenate + L-cysteine + CTP  ->  diphosphate + CMP + R-4'-phosphopantothenoyl-L-cysteine + H+
         In pathways
         PANTOSYN-PWY (pantothenate and coenzyme A biosynthesis I)
         PWY-4221 (PWY-4221)
         PWY-4242 (PWY-4242)
         COA-PWY (coenzyme A biosynthesis)
        R-4'-phosphopantothenoyl-L-cysteine + H+  ->  4'-phosphopantetheine + CO2
         In pathways
         PANTOSYN-PWY (pantothenate and coenzyme A biosynthesis I)
         PWY-4221 (PWY-4221)
         PWY-4242 (PWY-4242)
         COA-PWY (coenzyme A biosynthesis)



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ORGANISMS CONTAINING AT LEAST 6 GENES FROM THE GROUP:

Total number of orgs: 185
Effective number of orgs (counting one per cluster within 468 clusters): 121

Organism list
Homologs in each organism in the list
Features enriched in organism list


Follow (ncbi) link, when present, to find the set of organism features for each organism
Org ID  Org Name  # genes in group found in org  
YPSE349747 ncbi Yersinia pseudotuberculosis IP 317587
YPSE273123 ncbi Yersinia pseudotuberculosis IP 329537
YPES386656 ncbi Yersinia pestis Pestoides F7
YPES377628 ncbi Yersinia pestis Nepal5167
YPES360102 ncbi Yersinia pestis Antiqua7
YPES349746 ncbi Yersinia pestis Angola7
YPES214092 ncbi Yersinia pestis CO927
YPES187410 ncbi Yersinia pestis KIM 106
YENT393305 ncbi Yersinia enterocolitica enterocolitica 80817
XORY360094 ncbi Xanthomonas oryzae pv. oryzae PXO99A6
XORY342109 ncbi Xanthomonas oryzae pv. oryzae MAFF 3110186
XFAS405440 ncbi Xylella fastidiosa M126
XFAS183190 ncbi Xylella fastidiosa Temecula16
XFAS160492 ncbi Xylella fastidiosa 9a5c6
XCAM487884 Xanthomonas campestris pv. paulliniae6
XCAM316273 ncbi Xanthomonas campestris pv. vesicatoria str. 85-106
XCAM314565 ncbi Xanthomonas campestris pv. campestris str. 80046
XCAM190485 ncbi Xanthomonas campestris pv. campestris str. ATCC 339136
XAXO190486 ncbi Xanthomonas axonopodis pv. citri str. 3066
VVUL216895 ncbi Vibrio vulnificus CMCP66
VVUL196600 ncbi Vibrio vulnificus YJ0166
VPAR223926 ncbi Vibrio parahaemolyticus RIMD 22106336
VFIS312309 ncbi Vibrio fischeri ES1146
VCHO345073 ncbi Vibrio cholerae O3956
VCHO ncbi Vibrio cholerae O1 biovar El Tor str. N169616
TTUR377629 ncbi Teredinibacter turnerae T79016
TDEN292415 ncbi Thiobacillus denitrificans ATCC 252597
STYP99287 ncbi Salmonella enterica enterica serovar Typhimurium str. LT27
SSP94122 ncbi Shewanella sp. ANA-37
SSP644076 Silicibacter sp. TrichCH4B6
SSP292414 ncbi Ruegeria sp. TM10406
SSON300269 ncbi Shigella sonnei Ss0466
SSED425104 ncbi Shewanella sediminis HAW-EB37
SPRO399741 ncbi Serratia proteamaculans 5687
SPEA398579 ncbi Shewanella pealeana ATCC 7003457
SONE211586 ncbi Shewanella oneidensis MR-17
SLOI323850 ncbi Shewanella loihica PV-47
SLAC55218 Ruegeria lacuscaerulensis6
SHIGELLA ncbi Shigella flexneri 2a str. 2457T7
SHAL458817 ncbi Shewanella halifaxensis HAW-EB47
SGLO343509 ncbi Sodalis glossinidius morsitans6
SFLE373384 ncbi Shigella flexneri 5 str. 84016
SFLE198214 ncbi Shigella flexneri 2a str. 3017
SENT454169 ncbi Salmonella enterica enterica serovar Heidelberg str. SL4767
SENT321314 ncbi Salmonella enterica enterica serovar Choleraesuis str. SC-B677
SENT295319 ncbi Salmonella enterica enterica serovar Paratyphi A str. ATCC 91507
SENT220341 ncbi Salmonella enterica enterica serovar Typhi str. CT187
SENT209261 ncbi Salmonella enterica enterica serovar Typhi str. Ty27
SDYS300267 ncbi Shigella dysenteriae Sd1977
SDEN318161 ncbi Shewanella denitrificans OS2177
SDEG203122 ncbi Saccharophagus degradans 2-406
SBOY300268 ncbi Shigella boydii Sb2277
SBAL402882 ncbi Shewanella baltica OS1857
SBAL399599 ncbi Shewanella baltica OS1957
RSPH272943 ncbi Rhodobacter sphaeroides 2.4.16
RSOL267608 ncbi Ralstonia solanacearum GMI10007
RMET266264 ncbi Ralstonia metallidurans CH346
RFER338969 ncbi Rhodoferax ferrireducens T1187
REUT381666 ncbi Ralstonia eutropha H167
REUT264198 ncbi Ralstonia eutropha JMP1347
RETL347834 ncbi Rhizobium etli CFN 426
RDEN375451 ncbi Roseobacter denitrificans OCh 1146
PSYR223283 ncbi Pseudomonas syringae pv. tomato str. DC30007
PSYR205918 ncbi Pseudomonas syringae pv. syringae B728a7
PSTU379731 ncbi Pseudomonas stutzeri A15016
PSP56811 Psychrobacter sp.6
PSP312153 ncbi Polynucleobacter necessarius asymbioticus QLW-P1DMWA-17
PSP296591 ncbi Polaromonas sp. JS6667
PPUT76869 ncbi Pseudomonas putida GB-16
PPUT351746 ncbi Pseudomonas putida F16
PPUT160488 ncbi Pseudomonas putida KT24406
PPRO298386 ncbi Photobacterium profundum SS96
PMUL272843 ncbi Pasteurella multocida multocida Pm707
PMEN399739 ncbi Pseudomonas mendocina ymp6
PLUM243265 ncbi Photorhabdus luminescens laumondii TTO17
PING357804 ncbi Psychromonas ingrahamii 377
PHAL326442 ncbi Pseudoalteromonas haloplanktis TAC1256
PFLU220664 ncbi Pseudomonas fluorescens Pf-56
PFLU216595 ncbi Pseudomonas fluorescens SBW257
PFLU205922 ncbi Pseudomonas fluorescens Pf0-16
PENT384676 ncbi Pseudomonas entomophila L486
PCRY335284 ncbi Psychrobacter cryohalolentis K56
PCAR338963 ncbi Pelobacter carbinolicus DSM 23806
PATL342610 ncbi Pseudoalteromonas atlantica T6c6
PARC259536 ncbi Psychrobacter arcticus 273-46
PAER208964 ncbi Pseudomonas aeruginosa PAO16
PAER208963 ncbi Pseudomonas aeruginosa UCBPP-PA146
OCAR504832 ncbi Oligotropha carboxidovorans OM56
NOCE323261 ncbi Nitrosococcus oceani ATCC 197076
NMUL323848 ncbi Nitrosospira multiformis ATCC 251967
NMEN272831 ncbi Neisseria meningitidis FAM186
NMEN122587 ncbi Neisseria meningitidis Z24916
NMEN122586 ncbi Neisseria meningitidis MC586
NGON242231 ncbi Neisseria gonorrhoeae FA 10906
NEUT335283 ncbi Nitrosomonas eutropha C917
NEUR228410 ncbi Nitrosomonas europaea ATCC 197186
MXAN246197 ncbi Myxococcus xanthus DK 16226
MSUC221988 ncbi Mannheimia succiniciproducens MBEL55E6
MSP400668 ncbi Marinomonas sp. MWYL17
MPET420662 ncbi Methylibium petroleiphilum PM17
MFLA265072 ncbi Methylobacillus flagellatus KT7
MAQU351348 ncbi Marinobacter aquaeolei VT87
LPNE400673 ncbi Legionella pneumophila Corby6
LPNE297246 ncbi Legionella pneumophila Paris6
LPNE297245 ncbi Legionella pneumophila Lens6
LPNE272624 ncbi Legionella pneumophila pneumophila Philadelphia 16
LCHO395495 ncbi Leptothrix cholodnii SP-67
KPNE272620 ncbi Klebsiella pneumoniae pneumoniae MGH 785787
JSP375286 ncbi Janthinobacterium sp. Marseille7
ILOI283942 ncbi Idiomarina loihiensis L2TR7
HSOM228400 ncbi Haemophilus somnus 23366
HSOM205914 ncbi Haemophilus somnus 129PT6
HINF71421 ncbi Haemophilus influenzae Rd KW207
HINF374930 ncbi Haemophilus influenzae PittEE7
HINF281310 ncbi Haemophilus influenzae 86-028NP7
HHAL349124 ncbi Halorhodospira halophila SL16
HDUC233412 ncbi Haemophilus ducreyi 35000HP7
HCHE349521 ncbi Hahella chejuensis KCTC 23967
HARS204773 ncbi Herminiimonas arsenicoxydans7
GURA351605 ncbi Geobacter uraniireducens Rf46
GSUL243231 ncbi Geobacter sulfurreducens PCA6
ESP42895 Enterobacter sp.7
EFER585054 ncbi Escherichia fergusonii ATCC 354697
ECOO157 ncbi Escherichia coli O157:H7 EDL9337
ECOL83334 Escherichia coli O157:H77
ECOL585397 ncbi Escherichia coli ED1a7
ECOL585057 ncbi Escherichia coli IAI397
ECOL585056 ncbi Escherichia coli UMN0267
ECOL585055 ncbi Escherichia coli 559897
ECOL585035 ncbi Escherichia coli S887
ECOL585034 ncbi Escherichia coli IAI17
ECOL481805 ncbi Escherichia coli ATCC 87397
ECOL469008 ncbi Escherichia coli BL21(DE3)7
ECOL439855 ncbi Escherichia coli SMS-3-57
ECOL413997 ncbi Escherichia coli B str. REL6067
ECOL409438 ncbi Escherichia coli SE117
ECOL405955 ncbi Escherichia coli APEC O16
ECOL364106 ncbi Escherichia coli UTI897
ECOL362663 ncbi Escherichia coli 5367
ECOL331111 ncbi Escherichia coli E24377A7
ECOL316407 ncbi Escherichia coli K-12 substr. W31106
ECOL199310 ncbi Escherichia coli CFT0737
ECAR218491 ncbi Pectobacterium atrosepticum SCRI10437
DPSY177439 ncbi Desulfotalea psychrophila LSv546
DNOD246195 ncbi Dichelobacter nodosus VCS1703A6
DARO159087 ncbi Dechloromonas aromatica RCB7
CVIO243365 ncbi Chromobacterium violaceum ATCC 124726
CSP501479 Citreicella sp. SE456
CSAL290398 ncbi Chromohalobacter salexigens DSM 30437
CJAP155077 Cellvibrio japonicus6
BVIE269482 ncbi Burkholderia vietnamiensis G46
BTHA271848 ncbi Burkholderia thailandensis E2646
BSP376 Bradyrhizobium sp.6
BSP36773 Burkholderia sp.6
BPSE320373 ncbi Burkholderia pseudomallei 6686
BPSE320372 ncbi Burkholderia pseudomallei 1710b6
BPSE272560 ncbi Burkholderia pseudomallei K962436
BPET94624 Bordetella petrii6
BPER257313 ncbi Bordetella pertussis Tohama I7
BPAR257311 ncbi Bordetella parapertussis 128227
BMAL320389 ncbi Burkholderia mallei NCTC 102476
BMAL320388 ncbi Burkholderia mallei SAVP16
BMAL243160 ncbi Burkholderia mallei ATCC 233446
BCEN331272 ncbi Burkholderia cenocepacia HI24246
BCEN331271 ncbi Burkholderia cenocepacia AU 10546
BBRO257310 ncbi Bordetella bronchiseptica RB507
BANT592021 ncbi Bacillus anthracis A02486
BANT568206 ncbi Bacillus anthracis CDC 6846
BANT261594 ncbi Bacillus anthracis Ames Ancestor6
BANT260799 ncbi Bacillus anthracis Sterne6
BAMB398577 ncbi Burkholderia ambifaria MC40-66
BAMB339670 ncbi Burkholderia ambifaria AMMD6
ASP76114 ncbi Aromatoleum aromaticum EbN17
ASP62977 ncbi Acinetobacter sp. ADP16
ASP62928 ncbi Azoarcus sp. BH726
ASP232721 ncbi Acidovorax sp. JS427
ASAL382245 ncbi Aeromonas salmonicida salmonicida A4497
APLE434271 ncbi Actinobacillus pleuropneumoniae serovar 3 str. JL037
APLE416269 ncbi Actinobacillus pleuropneumoniae L207
AHYD196024 Aeromonas hydrophila dhakensis7
AEHR187272 ncbi Alkalilimnicola ehrlichii MLHE-17
ABOR393595 ncbi Alcanivorax borkumensis SK27
ABAU360910 ncbi Bordetella avium 197N7
AAVE397945 ncbi Acidovorax citrulli AAC00-17
AAEO224324 ncbi Aquifex aeolicus VF56


Names of the homologs of the genes in the group in each of these orgs
  EG11312   EG11191   EG10886   EG10863   EG10808   EG10251   EG10004   
YPSE349747 YPSIP31758_0061YPSIP31758_0058YPSIP31758_0062YPSIP31758_0056YPSIP31758_0057YPSIP31758_0059YPSIP31758_0060
YPSE273123 YPTB0046YPTB0043YPTB0047YPTB0041YPTB0042YPTB0044YPTB0045
YPES386656 YPDSF_3856YPDSF_3859YPDSF_3855YPDSF_3861YPDSF_3860YPDSF_3858YPDSF_3857
YPES377628 YPN_3801YPN_3804YPN_3800YPN_3806YPN_3805YPN_3803YPN_3802
YPES360102 YPA_3493YPA_3496YPA_3492YPA_3498YPA_3497YPA_3495YPA_3494
YPES349746 YPANGOLA_A0055YPANGOLA_A0052YPANGOLA_A0056YPANGOLA_A0049YPANGOLA_A0051YPANGOLA_A0053YPANGOLA_A0054
YPES214092 YPO0049YPO0046YPO0050YPO0044YPO0045YPO0047YPO0048
YPES187410 Y0092Y0095Y0097Y0096Y0094Y0093
YENT393305 YE0063YE0060YE0064YE0058YE0059YE0061YE0062
XORY360094 XOOORF_4883XOOORF_5179XOOORF_4205XOOORF_4869XOOORF_4881XOOORF_4882
XORY342109 XOO0462XOO4295XOO1040XOO0474XOO0464XOO0463
XFAS405440 XFASM12_0125XFASM12_0546XFASM12_0845XFASM12_0130XFASM12_0127XFASM12_0126
XFAS183190 PD_0117PD_0488PD_0722PD_0122PD_0119PD_0118
XFAS160492 XF0148XF1206XF1505XF0153XF0150XF0149
XCAM487884 XCC-B100_4044XCC-B100_4230XCC-B100_0933XCC-B100_4031XCC-B100_4042XCC-B100_4043
XCAM316273 XCAORF_0429XCAORF_0226XCAORF_3592XCAORF_0442XCAORF_0431XCAORF_0430
XCAM314565 XC_3944XC_4123XC_0960XC_3931XC_3942XC_3943
XCAM190485 XCC3860XCC4034XCC3251XCC3847XCC3858XCC3859
XAXO190486 XAC3915XAC4159XAC3397XAC3903XAC3913XAC3914
VVUL216895 VV1_0825VV1_0829VV1_0824VV1_0832VV1_0831VV1_0828
VVUL196600 VV0285VV0282VV0286VV0279VV0280VV0283
VPAR223926 VP0184VP0180VP0185VP0177VP0178VP0181
VFIS312309 VF0126VF0123VF0127VF0111VF0112VF0125
VCHO345073 VC0395_A2597VC0395_A2593VC0395_A2599VC0395_A2589VC0395_A2590VC0395_A2595
VCHO VC0217VC0214VC0218VC0210VC0211VC0215
TTUR377629 TERTU_0184TERTU_0188TERTU_0181TERTU_0176TERTU_0190TERTU_0185
TDEN292415 TBD_2588TBD_2389TBD_2589TBD_0477TBD_0255TBD_2586TBD_2587
STYP99287 STM3729STM3732STM3728STM3734STM3733STM3731STM3730
SSP94122 SHEWANA3_3770SHEWANA3_3773SHEWANA3_3769SHEWANA3_3777SHEWANA3_3776SHEWANA3_3772SHEWANA3_3771
SSP644076 SCH4B_3369SCH4B_3990SCH4B_3196SCH4B_1996SCH4B_1306SCH4B_1303
SSP292414 TM1040_0008TM1040_0671TM1040_2872TM1040_1777TM1040_0461TM1040_0458
SSON300269 SSO_3765SSO_3770SSO_3763SSO_3764SSO_3766SSO_3767
SSED425104 SSED_0385SSED_0382SSED_0386SSED_0378SSED_0379SSED_0383SSED_0384
SPRO399741 SPRO_4842SPRO_4845SPRO_4841SPRO_4847SPRO_4846SPRO_4844SPRO_4843
SPEA398579 SPEA_3837SPEA_3840SPEA_3836SPEA_3844SPEA_3843SPEA_3839SPEA_3838
SONE211586 SO_4248SO_4251SO_4247SO_4256SO_4255SO_4250SO_4249
SLOI323850 SHEW_3481SHEW_3484SHEW_3480SHEW_3488SHEW_3487SHEW_3483SHEW_3482
SLAC55218 SL1157_1141SL1157_0112SL1157_1093SL1157_2677SL1157_0578SL1157_0579
SHIGELLA RADCTTKRPMBRPHPYREDUTDFP
SHAL458817 SHAL_0429SHAL_0426SHAL_0430SHAL_0422SHAL_0423SHAL_0427SHAL_0428
SGLO343509 SG2211SG2208SG2213SG2212SG2210SG2209
SFLE373384 SFV_3892SFV_3889SFV_3887SFV_3888SFV_3890SFV_3891
SFLE198214 AAN45124.1AAN45127.1AAN45123.1AAN45129.1AAN45128.1AAN45126.1AAN45125.1
SENT454169 SEHA_C4055SEHA_C4058SEHA_C4054SEHA_C4060SEHA_C4059SEHA_C4057SEHA_C4056
SENT321314 SCH_3652SCH_3655SCH_3651SCH_3657SCH_3656SCH_3654SCH_3653
SENT295319 SPA3581SPA3584SPA3580SPA3586SPA3585SPA3583SPA3582
SENT220341 STY4065STY4062STY4066STY4060STY4061STY4063STY4064
SENT209261 T3789T3786T3790T3784T3785T3787T3788
SDYS300267 SDY_4068SDY_4071SDY_4067SDY_4074SDY_4073SDY_4070SDY_4069
SDEN318161 SDEN_0326SDEN_0323SDEN_0327SDEN_0319SDEN_0320SDEN_0324SDEN_0325
SDEG203122 SDE_3678SDE_3674SDE_3679SDE_3683SDE_3672SDE_3677
SBOY300268 SBO_3640SBO_3643SBO_3639SBO_3645SBO_3644SBO_3642SBO_3641
SBAL402882 SHEW185_0376SHEW185_0373SHEW185_0377SHEW185_0369SHEW185_0370SHEW185_0374SHEW185_0375
SBAL399599 SBAL195_0388SBAL195_0385SBAL195_0389SBAL195_0381SBAL195_0382SBAL195_0386SBAL195_0387
RSPH272943 RSP_1171RSP_2016RSP_1221RSP_1929RSP_0598RSP_0599
RSOL267608 RSC2444RSC0031RSC2445RSC2159RSC0139RSC2463RSC2461
RMET266264 RMET_0142RMET_2870RMET_0852RMET_0150RMET_2889RMET_2887
RFER338969 RFER_3252RFER_3521RFER_3180RFER_1629RFER_3928RFER_2646RFER_2647
REUT381666 H16_A3033H16_A0210H16_A3034H16_A0949H16_A0224H16_A3049H16_A3048
REUT264198 REUT_A2732REUT_A0182REUT_A2733REUT_A2477REUT_A0195REUT_A2749REUT_A2747
RETL347834 RHE_CH01848RHE_CH03816RHE_CH00363RHE_CH00474RHE_CH00330RHE_CH00342
RDEN375451 RD1_3690RD1_1680RD1_0426RD1_3236RD1_1201RD1_1200
PSYR223283 PSPTO_0086PSPTO_3319PSPTO_0089PSPTO_0077PSPTO_0080PSPTO_0084PSPTO_0085
PSYR205918 PSYR_0222PSYR_3154PSYR_0224PSYR_0213PSYR_0216PSYR_0220PSYR_0221
PSTU379731 PST_0473PST_0107PST_0463PST_0466PST_0471PST_0472
PSP56811 PSYCPRWF_0491PSYCPRWF_0589PSYCPRWF_2191PSYCPRWF_0521PSYCPRWF_1826PSYCPRWF_0492
PSP312153 PNUC_1733PNUC_2012PNUC_1734PNUC_1080PNUC_2007PNUC_1743PNUC_1742
PSP296591 BPRO_0948BPRO_3979BPRO_3802BPRO_1339BPRO_0217BPRO_3178BPRO_3180
PPUT76869 PPUTGB1_5335PPUTGB1_5333PPUTGB1_5342PPUTGB1_5340PPUTGB1_5337PPUTGB1_5336
PPUT351746 PPUT_5194PPUT_5192PPUT_5202PPUT_5199PPUT_5196PPUT_5195
PPUT160488 PP_5284PP_5282PP_5294PP_5291PP_5286PP_5285
PPRO298386 PBPRA0202PBPRA0200PBPRA0203PBPRA0198PBPRA0199PBPRA0201
PMUL272843 PM1152PM1155PM1151PM1876PM1877PM1154PM1153
PMEN399739 PMEN_4376PMEN_4374PMEN_4386PMEN_4383PMEN_4378PMEN_4377
PLUM243265 PLU4865PLU4868PLU4864PLU4870PLU4869PLU4867PLU4866
PING357804 PING_0056PING_0059PING_0055PING_3479PING_3478PING_0058PING_0057
PHAL326442 PSHAA2643PSHAA2645PSHAA2642PSHAA2788PSHAA2787PSHAA2644
PFLU220664 PFL_6051PFL_6049PFL_6059PFL_6056PFL_6053PFL_6052
PFLU216595 PFLU5982PFLU4083PFLU5980PFLU5991PFLU5988PFLU5984PFLU5983
PFLU205922 PFL_5539PFL_5537PFL_5547PFL_5544PFL_5541PFL_5540
PENT384676 PSEEN5431PSEEN5427PSEEN5439PSEEN5436PSEEN5433PSEEN5432
PCRY335284 PCRYO_2119PCRYO_1989PCRYO_2154PCRYO_2034PCRYO_0570PCRYO_2118
PCAR338963 PCAR_0065PCAR_2878PCAR_2030PCAR_1325PCAR_1563PCAR_2011
PATL342610 PATL_0046PATL_0044PATL_0048PATL_4282PATL_4281PATL_0045
PARC259536 PSYC_1834PSYC_1710PSYC_1865PSYC_1753PSYC_0581PSYC_1833
PAER208964 PA5319PA5316PA5334PA5331PA5321PA5320
PAER208963 PA14_70230PA14_70190PA14_70420PA14_70370PA14_70260PA14_70240
OCAR504832 OCAR_4849OCAR_4063OCAR_4413OCAR_7569OCAR_4488OCAR_4489
NOCE323261 NOC_0236NOC_2640NOC_2442NOC_2998NOC_2993NOC_2992
NMUL323848 NMUL_A2138NMUL_A1117NMUL_A2139NMUL_A0066NMUL_A0225NMUL_A2136NMUL_A2137
NMEN272831 NMC1174NMC1851NMC1430NMC0345NMC0833NMC1576
NMEN122587 NMA1448NMA2166NMA1702NMA0582NMA1112NMA1916
NMEN122586 NMB_1038NMB_0321NMB_1499NMB_1874NMB_0893NMB_1658
NGON242231 NGO0681NGO1680NGO0958NGO0029NGO0459NGO1307
NEUT335283 NEUT_0782NEUT_1933NEUT_0781NEUT_0308NEUT_2050NEUT_0784NEUT_0783
NEUR228410 NE1464NE1465NE0276NE1734NE1462NE1463
MXAN246197 MXAN_1952MXAN_6526MXAN_2004MXAN_4633MXAN_2076MXAN_4395
MSUC221988 MS1936MS1942MS0252MS0251MS1937MS1938
MSP400668 MMWYL1_0624MMWYL1_0620MMWYL1_0629MMWYL1_4361MMWYL1_0619MMWYL1_0622MMWYL1_0623
MPET420662 MPE_A2695MPE_A0501MPE_A1117MPE_A2705MPE_A0088MPE_A2570MPE_A2571
MFLA265072 MFLA_0315MFLA_2257MFLA_0312MFLA_0043MFLA_2485MFLA_0313MFLA_0314
MAQU351348 MAQU_3564MAQU_3502MAQU_3565MAQU_0548MAQU_0546MAQU_3562MAQU_3563
LPNE400673 LPC_1989LPC_2865LPC_1496LPC_0672LPC_1991LPC_1990
LPNE297246 LPP2553LPP0544LPP1994LPP1206LPP2551LPP2552
LPNE297245 LPL2409LPL0520LPL1989LPL1212LPL2407LPL2408
LPNE272624 LPG2489LPG0479LPG2012LPG1204LPG2487LPG2488
LCHO395495 LCHO_0695LCHO_0542LCHO_0753LCHO_0705LCHO_4049LCHO_2644LCHO_2645
KPNE272620 GKPORF_B3341GKPORF_B3344GKPORF_B3340GKPORF_B3347GKPORF_B3346GKPORF_B3343GKPORF_B3342
JSP375286 MMA_2551MMA_3231MMA_2552MMA_1332MMA_0191MMA_0825MMA_0826
ILOI283942 IL0240IL0237IL0241IL2425IL2426IL0238IL0239
HSOM228400 HSM_0009HSM_0006HSM_0010HSM_0326HSM_0007HSM_0008
HSOM205914 HS_0144HS_0141HS_0145HS_1292HS_0142HS_0143
HINF71421 HI_0952HI_0955HI_0951HI_0273HI_0272HI_0954HI_0953
HINF374930 CGSHIEE_07200CGSHIEE_07185CGSHIEE_07205CGSHIEE_01685CGSHIEE_01690CGSHIEE_07190CGSHIEE_07195
HINF281310 NTHI1125NTHI1128NTHI1124NTHI0381NTHI0380NTHI1127NTHI1126
HHAL349124 HHAL_2301HHAL_2314HHAL_0973HHAL_2292HHAL_2298HHAL_2299
HDUC233412 HD_0732HD_0735HD_0731HD_0301HD_1759HD_0734HD_0733
HCHE349521 HCH_01020HCH_06098HCH_01019HCH_06338HCH_06340HCH_01022HCH_01021
HARS204773 HEAR2468HEAR2984HEAR2469HEAR2126HEAR0162HEAR0842HEAR0843
GURA351605 GURA_4138GURA_3410GURA_2256GURA_2069GURA_1908GURA_2927
GSUL243231 GSU_0386GSU_0951GSU_1795GSU_1637GSU_1595GSU_1124
ESP42895 ENT638_0101ENT638_0098ENT638_0102ENT638_0096ENT638_0097ENT638_0099ENT638_0100
EFER585054 EFER_3929EFER_3932EFER_3928EFER_3935EFER_3934EFER_3931EFER_3930
ECOO157 RADCTTKRPMBRPHPYREDUTDFP
ECOL83334 ECS4513ECS4516ECS4512ECS4518ECS4517ECS4515ECS4514
ECOL585397 ECED1_4322ECED1_4325ECED1_4320ECED1_4327ECED1_4326ECED1_4324ECED1_4323
ECOL585057 ECIAI39_4156ECIAI39_4159ECIAI39_4155ECIAI39_4162ECIAI39_4161ECIAI39_4158ECIAI39_4157
ECOL585056 ECUMN_4153ECUMN_4156ECUMN_4151ECUMN_4158ECUMN_4157ECUMN_4155ECUMN_4154
ECOL585055 EC55989_4103EC55989_4106EC55989_4101EC55989_4108EC55989_4107EC55989_4105EC55989_4104
ECOL585035 ECS88_4052ECS88_4055ECS88_4051ECS88_4057ECS88_4056ECS88_4054ECS88_4053
ECOL585034 ECIAI1_3809ECIAI1_3812ECIAI1_3807ECIAI1_3814ECIAI1_3813ECIAI1_3811ECIAI1_3810
ECOL481805 ECOLC_0073ECOLC_0070ECOLC_0074ECOLC_0068ECOLC_0069ECOLC_0071ECOLC_0072
ECOL469008 ECBD_0088ECBD_0085ECBD_0089ECBD_0083ECBD_0084ECBD_0086ECBD_0087
ECOL439855 ECSMS35_3973ECSMS35_3976ECSMS35_3972ECSMS35_3978ECSMS35_3977ECSMS35_3975ECSMS35_3974
ECOL413997 ECB_03495ECB_03498ECB_03494ECB_03500ECB_03499ECB_03497ECB_03496
ECOL409438 ECSE_3918ECSE_3921ECSE_3917ECSE_3923ECSE_3922ECSE_3920ECSE_3919
ECOL405955 APECO1_2823APECO1_2820APECO1_2818APECO1_2819APECO1_2821APECO1_2822
ECOL364106 UTI89_C4182UTI89_C4185UTI89_C4181UTI89_C4187UTI89_C4186UTI89_C4184UTI89_C4183
ECOL362663 ECP_3736ECP_3739ECP_3735ECP_3741ECP_3740ECP_3738ECP_3737
ECOL331111 ECE24377A_4139ECE24377A_4142ECE24377A_4138ECE24377A_4144ECE24377A_4143ECE24377A_4141ECE24377A_4140
ECOL316407 ECK3628:JW5643:B3638ECK3631:JW5641:B3641ECK3627:JW3612:B3637ECK3632:JW3617:B3642ECK3630:JW3615:B3640ECK3629:JW5642:B3639
ECOL199310 C4462C4465C4461C4467C4466C4464C4463
ECAR218491 ECA0145ECA0142ECA0146ECA0140ECA0141ECA0143ECA0144
DPSY177439 DP0715DP1683DP1273DP2916DP2607DP1673
DNOD246195 DNO_0822DNO_0060DNO_0664DNO_0919DNO_0824DNO_0823
DARO159087 DARO_3142DARO_0627DARO_3143DARO_3851DARO_0122DARO_3140DARO_3141
CVIO243365 CV_3079CV_3456CV_3847CV_4248CV_3081CV_3080
CSP501479 CSE45_3579CSE45_0605CSE45_3415CSE45_1764CSE45_4340CSE45_4341
CSAL290398 CSAL_2972CSAL_2985CSAL_2971CSAL_3206CSAL_3204CSAL_2982CSAL_2981
CJAP155077 CJA_3522CJA_3526CJA_3515CJA_0203CJA_3528CJA_3523
BVIE269482 BCEP1808_2579BCEP1808_3181BCEP1808_2580BCEP1808_0914BCEP1808_2593BCEP1808_2592
BTHA271848 BTH_I0781BTH_I0158BTH_I0780BTH_I1584BTH_I0767BTH_I0768
BSP376 BRADO0713BRADO0635BRADO0173BRADO0748BRADO0078BRADO0077
BSP36773 BCEP18194_A5833BCEP18194_A6449BCEP18194_A5834BCEP18194_A4105BCEP18194_A5847BCEP18194_A5846
BPSE320373 BURPS668_0979BURPS668_0183BURPS668_0978BURPS668_2951BURPS668_0964BURPS668_0965
BPSE320372 BURPS1710B_A1193BURPS1710B_A0402BURPS1710B_A1192BURPS1710B_A3308BURPS1710B_A1178BURPS1710B_A1179
BPSE272560 BPSL0917BPSL0198BPSL0916BPSL2565BPSL0903BPSL0904
BPET94624 BPET3149BPET0432BPET3313BPET2268BPET0423BPET2816
BPER257313 BP1235BP0381BP2051BP1588BP0370BP2578BP1751
BPAR257311 BPP1850BPP4049BPP1737BPP2995BPP4060BPP1976BPP1982
BMAL320389 BMA10247_2099BMA10247_3440BMA10247_2100BMA10247_1966BMA10247_2115BMA10247_2114
BMAL320388 BMASAVP1_A2646BMASAVP1_A2908BMASAVP1_A2647BMASAVP1_A0813BMASAVP1_A2661BMASAVP1_A2660
BMAL243160 BMA_2230BMA_3247BMA_2231BMA_2098BMA_2245BMA_2244
BCEN331272 BCEN2424_2501BCEN2424_3098BCEN2424_2502BCEN2424_0997BCEN2424_2515BCEN2424_2514
BCEN331271 BCEN_1890BCEN_2484BCEN_1891BCEN_0518BCEN_1904BCEN_1903
BBRO257310 BB3258BB4522BB3371BB2961BB4533BB2164BB2170
BANT592021 BAA_4704BAA_4020BAA_4732BAA_4044BAA_4136BAA_4031
BANT568206 BAMEG_4721BAMEG_0635BAMEG_4751BAMEG_0610BAMEG_0518BAMEG_0624
BANT261594 GBAA4685GBAA3996GBAA4715GBAA4021GBAA4112GBAA4007
BANT260799 BAS4351BAS3709BAS4377BAS3733BAS3821BAS3720
BAMB398577 BAMMC406_2419BAMMC406_3007BAMMC406_2420BAMMC406_0869BAMMC406_2433BAMMC406_2432
BAMB339670 BAMB_2548BAMB_3145BAMB_2549BAMB_0857BAMB_2562BAMB_2561
ASP76114 EBA840EBA6247EBA4482C1A232EBA3324EBA837EBA838
ASP62977 ACIAD3126ACIAD0502ACIAD0050ACIAD3525ACIAD0901ACIAD3125
ASP62928 AZO1137AZO1136AZO3963AZO3663AZO1139AZO1138
ASP232721 AJS_3450AJS_0589AJS_3384AJS_0923AJS_0234AJS_1002AJS_1001
ASAL382245 ASA_4229ASA_4232ASA_4228ASA_0101ASA_0102ASA_4231ASA_4230
APLE434271 APJL_2017APJL_2014APJL_2018APJL_0055APJL_0333APJL_2015APJL_2016
APLE416269 APL_1970APL_1967APL_1971APL_0055APL_0318APL_1968APL_1969
AHYD196024 AHA_0160AHA_0157AHA_0161AHA_4224AHA_4223AHA_0158AHA_0159
AEHR187272 MLG_2664MLG_1059MLG_2641MLG_2446MLG_0260MLG_2846MLG_2847
ABOR393595 ABO_0214ABO_0209ABO_0215ABO_0206ABO_0207ABO_0212ABO_0213
ABAU360910 BAV2405BAV3169BAV2485BAV1936BAV3180BAV1402BAV1409
AAVE397945 AAVE_3773AAVE_4136AAVE_3428AAVE_3579AAVE_0289AAVE_1329AAVE_1328
AAEO224324 AQ_1610AQ_2179AQ_924AQ_1907AQ_220AQ_815


Organism features enriched in list (features available for 173 out of the 185 orgs in the list)
Feature    Pvalue       Num occurrences in list  Total num occurrences  
Arrangment:Chains 0.00158131692
Arrangment:Pairs 0.002607045112
Disease:Anthrax 0.007565344
Disease:Bubonic_plague 0.000641866
Disease:Dysentery 0.000641866
Disease:Gastroenteritis 0.00045891013
Disease:Legionnaire's_disease 0.007565344
Endospores:No 4.569e-1031211
Endospores:Yes 0.0001866553
GC_Content_Range4:0-40 2.272e-2215213
GC_Content_Range4:40-60 9.376e-12103224
GC_Content_Range4:60-100 0.003792755145
GC_Content_Range7:30-40 1.418e-1315166
GC_Content_Range7:50-60 1.466e-1060107
GC_Content_Range7:60-70 0.000466655134
Genome_Size_Range5:0-2 4.369e-206155
Genome_Size_Range5:2-4 0.000059039197
Genome_Size_Range5:4-6 1.833e-20103184
Genome_Size_Range5:6-10 0.00025372547
Genome_Size_Range9:1-2 5.010e-156128
Genome_Size_Range9:2-3 0.000315521120
Genome_Size_Range9:4-5 2.509e-75096
Genome_Size_Range9:5-6 6.180e-115388
Genome_Size_Range9:6-8 0.00003302338
Gram_Stain:Gram_Neg 1.120e-28156333
Gram_Stain:Gram_Pos 1.460e-214150
Habitat:Specialized 0.0055649853
Motility:No 6.455e-1214151
Motility:Yes 3.445e-12117267
Optimal_temp.:- 0.003181290257
Optimal_temp.:35-37 9.971e-81313
Oxygen_Req:Anaerobic 5.376e-98102
Oxygen_Req:Facultative 1.315e-787201
Pathogenic_in:Animal 0.00351932966
Pathogenic_in:No 0.000013145226
Pathogenic_in:Plant 0.00044801115
Shape:Coccus 1.247e-7682
Shape:Rod 4.986e-19149347
Shape:Spiral 0.0000646134
Temp._range:Hyperthermophilic 0.0025852123
Temp._range:Mesophilic 0.0010472153473
Temp._range:Psychrophilic 0.000343689



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ORGANISMS CONTAINING AT MOST 1 GENES FROM THE GROUP:

Total number of orgs: 70
Effective number of orgs (counting one per cluster within 468 clusters): 60

Organism list
Homologs in each organism in the list
Features enriched in organism list


Follow (ncbi) link, when present, to find the set of organism features for each organism
Org ID  Org Name  # genes in group found in org  
WPIP80849 Wolbachia endosymbiont of Brugia malayi1
UURE95667 Ureaplasma urealyticum serovar 130
UURE95664 Ureaplasma urealyticum serovar 100
UPAR505682 ncbi Ureaplasma parvum serovar 3 str. ATCC 278150
TPET390874 ncbi Thermotoga petrophila RKU-11
TPAL243276 ncbi Treponema pallidum pallidum Nichols1
TMAR243274 ncbi Thermotoga maritima MSB81
TDEN326298 ncbi Sulfurimonas denitrificans DSM 12511
TDEN243275 ncbi Treponema denticola ATCC 354051
SSUI391295 ncbi Streptococcus suis 05ZYH331
PPEN278197 ncbi Pediococcus pentosaceus ATCC 257451
PMAR167539 ncbi Prochlorococcus marinus marinus CCMP13751
PAST100379 Onion yellows phytoplasma0
NSEN222891 ncbi Neorickettsia sennetsu Miyayama1
NPHA348780 ncbi Natronomonas pharaonis DSM 21601
MSYN262723 ncbi Mycoplasma synoviae 531
MPUL272635 ncbi Mycoplasma pulmonis UAB CTIP1
MPNE272634 ncbi Mycoplasma pneumoniae M1290
MPEN272633 ncbi Mycoplasma penetrans HF-21
MMYC272632 ncbi Mycoplasma mycoides mycoides SC str. PG10
MMOB267748 ncbi Mycoplasma mobile 163K1
MMAR444158 ncbi Methanococcus maripaludis C61
MMAR426368 ncbi Methanococcus maripaludis C71
MMAR402880 ncbi Methanococcus maripaludis C51
MMAR267377 ncbi Methanococcus maripaludis S21
MLAB410358 ncbi Methanocorpusculum labreanum Z1
MJAN243232 ncbi Methanocaldococcus jannaschii DSM 26611
MHYO295358 ncbi Mycoplasma hyopneumoniae 2321
MHYO262722 ncbi Mycoplasma hyopneumoniae 74481
MHYO262719 ncbi Mycoplasma hyopneumoniae J1
MGEN243273 ncbi Mycoplasma genitalium G370
MFLO265311 ncbi Mesoplasma florum L11
MCAP340047 ncbi Mycoplasma capricolum capricolum ATCC 273430
MART243272 ncbi Mycoplasma arthritidis 158L3-11
MAEO419665 ncbi Methanococcus aeolicus Nankai-31
LPLA220668 ncbi Lactobacillus plantarum WCFS11
LDEL390333 ncbi Lactobacillus delbrueckii bulgaricus ATCC 118420
LDEL321956 ncbi Lactobacillus delbrueckii bulgaricus ATCC BAA-3650
LACI272621 ncbi Lactobacillus acidophilus NCFM1
HWAL362976 ncbi Haloquadratum walsbyi DSM 167901
HSP64091 ncbi Halobacterium sp. NRC-11
HSAL478009 ncbi Halobacterium salinarum R11
HPYL85963 ncbi Helicobacter pylori J991
HPYL357544 ncbi Helicobacter pylori HPAG11
HPY ncbi Helicobacter pylori 266951
HMUK485914 ncbi Halomicrobium mukohataei DSM 122861
HMAR272569 ncbi Haloarcula marismortui ATCC 430491
HACI382638 ncbi Helicobacter acinonychis Sheeba1
ECHA205920 ncbi Ehrlichia chaffeensis Arkansas1
CSUL444179 ncbi Candidatus Sulcia muelleri GWSS1
CMET456442 ncbi Candidatus Methanoregula boonei 6A81
CJEJ407148 ncbi Campylobacter jejuni jejuni 811161
CJEJ360109 ncbi Campylobacter jejuni doylei 269.971
CJEJ354242 ncbi Campylobacter jejuni jejuni 81-1761
CJEJ195099 ncbi Campylobacter jejuni RM12211
CJEJ192222 ncbi Campylobacter jejuni jejuni NCTC 111681
CHOM360107 ncbi Campylobacter hominis ATCC BAA-3810
CFET360106 ncbi Campylobacter fetus fetus 82-401
CCUR360105 ncbi Campylobacter curvus 525.921
CCON360104 ncbi Campylobacter concisus 138261
BXEN266265 ncbi Burkholderia xenovorans LB4000
BTUR314724 ncbi Borrelia turicatae 91E1351
BHER314723 ncbi Borrelia hermsii DAH1
BGAR290434 ncbi Borrelia garinii PBi0
BBUR224326 ncbi Borrelia burgdorferi B310
BAFZ390236 ncbi Borrelia afzelii PKo0
AYEL322098 ncbi Aster yellows witches-broom phytoplasma AYWB0
AURANTIMONAS Aurantimonas manganoxydans SI85-9A10
AMAR234826 ncbi Anaplasma marginale St. Maries1
ABUT367737 ncbi Arcobacter butzleri RM40181


Names of the homologs of the genes in the group in each of these orgs
  EG11312   EG11191   EG10886   EG10863   EG10808   EG10251   EG10004   
WPIP80849 WB_0535
UURE95667
UURE95664
UPAR505682
TPET390874 TPET_1235
TPAL243276 TP_0885
TMAR243274 TM_1557
TDEN326298 TMDEN_1602
TDEN243275 TDE_1042
SSUI391295 SSU05_1007
PPEN278197 PEPE_0827
PMAR167539 PRO_0933
PAST100379
NSEN222891 NSE_0957
NPHA348780 NP1256A
MSYN262723 MS53_0066
MPUL272635 MYPU_6960
MPNE272634
MPEN272633 MYPE1000
MMYC272632
MMOB267748 MMOB4150
MMAR444158 MMARC6_1182
MMAR426368 MMARC7_0736
MMAR402880 MMARC5_0085
MMAR267377 MMP1492
MLAB410358 MLAB_0317
MJAN243232 MJ_1109
MHYO295358 MHP259
MHYO262722 MHP7448_0122
MHYO262719 MHJ_0118
MGEN243273
MFLO265311 MFL227
MCAP340047
MART243272 MART0004
MAEO419665 MAEO_0561
LPLA220668 LP_1614
LDEL390333
LDEL321956
LACI272621 LBA0939
HWAL362976 HQ3229A
HSP64091 VNG2118G
HSAL478009 OE3953R
HPYL85963 JHP0799
HPYL357544 HPAG1_0848
HPY HP0865
HMUK485914 HMUK_0849
HMAR272569 RRNAC2521
HACI382638 HAC_1228
ECHA205920 ECH_0501
CSUL444179 SMGWSS_050
CMET456442 MBOO_0841
CJEJ407148 C8J_0423
CJEJ360109 JJD26997_1489
CJEJ354242 CJJ81176_0475
CJEJ195099 CJE_0500
CJEJ192222 CJ0450C
CHOM360107
CFET360106 CFF8240_0971
CCUR360105 CCV52592_0722
CCON360104 CCC13826_1345
BXEN266265
BTUR314724 BT0812
BHER314723 BH0812
BGAR290434
BBUR224326
BAFZ390236
AYEL322098
AURANTIMONAS
AMAR234826 AM805
ABUT367737 ABU_1793


Organism features enriched in list (features available for 65 out of the 70 orgs in the list)
Feature    Pvalue       Num occurrences in list  Total num occurrences  
Arrangment:Pairs 6.737e-61112
Arrangment:Singles 4.693e-852286
Endospores:No 7.472e-945211
GC_Content_Range4:0-40 2.240e-946213
GC_Content_Range4:40-60 0.000430613224
GC_Content_Range4:60-100 0.00056326145
GC_Content_Range7:0-30 4.536e-92047
GC_Content_Range7:50-60 0.00010922107
GC_Content_Range7:60-70 0.00166906134
Genome_Size_Range5:0-2 1.099e-2051155
Genome_Size_Range5:2-4 0.001972412197
Genome_Size_Range5:4-6 1.150e-101184
Genome_Size_Range9:0-1 2.795e-111727
Genome_Size_Range9:1-2 7.357e-934128
Genome_Size_Range9:4-5 0.0000572196
Gram_Stain:Gram_Pos 0.00033486150
Habitat:Host-associated 0.002721233206
Optimal_temp.:37 0.008048119106
Optimal_temp.:42 0.001329433
Oxygen_Req:Aerobic 0.005172412185
Oxygen_Req:Microaerophilic 3.005e-61018
Pathogenic_in:Swine 0.000635745
Salinity:Extreme_halophilic 0.000252557
Shape:Irregular_coccus 0.0058077617
Shape:Rod 5.418e-1213347
Shape:Sphere 2.851e-121519
Shape:Spiral 1.183e-132134



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ORGANISMS ENRICHED FOR GROUP:




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ORGANISMS DEPLETED FOR GROUP:




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PHYLOGENETIC PROFILE SIMILARITY WITH KNOWN PATHWAYS:

Pathways or complexes with absolute value of Pearson coefficient with respect to candidate larger than 0.4 are listed below
The candidate is assumed to exist in orgs listed in section List of organisms containing most genes from the group


Pathway or complex  # Orgs containing it  # of those orgs also containing candidate  Pearson Coeff  
GLYCOCAT-PWY (glycogen degradation I)2461620.6393
PWY0-1241 (ADP-L-glycero-β-D-manno-heptose biosynthesis)2181510.6354
PWY-5111 (CMP-KDO biosynthesis II (from D-arabinose 5-phosphate))3001750.6040
COBALSYN-PWY (adenosylcobalamin salvage from cobinamide I)1951360.5916
AST-PWY (arginine degradation II (AST pathway))1201020.5912
PWY-5918 (heme biosynthesis I)2721610.5683
PWY-1269 (CMP-KDO biosynthesis I)3251770.5661
PWY4FS-7 (phosphatidylglycerol biosynthesis I (plastidic))2911660.5604
KDO-LIPASYN-PWY (KDO2-lipid A biosynthesis I)2251430.5572
PWY0-1319 (CDP-diacylglycerol biosynthesis II)2961670.5565
HEME-BIOSYNTHESIS-II (heme biosynthesis from uroporphyrinogen-III I)2861630.5504
PHOSLIPSYN-PWY (phospholipid biosynthesis I)2901640.5485
LIPA-CORESYN-PWY (Lipid A-core biosynthesis)1761200.5285
NAGLIPASYN-PWY (lipid IVA biosynthesis)3481780.5282
PWY-4041 (γ-glutamyl cycle)2791570.5238
PWY-5913 (TCA cycle variation IV)3011630.5175
ECASYN-PWY (enterobacterial common antigen biosynthesis)1911240.5126
PWY-5386 (methylglyoxal degradation I)3051630.5090
3-HYDROXYPHENYLACETATE-DEGRADATION-PWY (4-hydroxyphenylacetate degradation)1491060.5086
PWY-5755 (4-hydroxybenzoate biosynthesis II (bacteria and fungi))81720.5008
GLUCARDEG-PWY (D-glucarate degradation I)1521060.4978
GLUTATHIONESYN-PWY (glutathione biosynthesis)3391710.4961
TYRFUMCAT-PWY (tyrosine degradation I)1841180.4879
PWY-5148 (acyl-CoA hydrolysis)2271340.4861
PWY-5857 (ubiquinone-10 biosynthesis (prokaryotic))1831170.4833
LIPASYN-PWY (phospholipases)2121260.4675
ENTNER-DOUDOROFF-PWY (Entner-Doudoroff pathway I)2491390.4666
GLYCOLYSIS-E-D (superpathway of glycolysis and Entner-Doudoroff)2491390.4666
GLUCONSUPER-PWY (D-gluconate degradation)2291320.4663
GALACTITOLCAT-PWY (galactitol degradation)73640.4623
GLUCARGALACTSUPER-PWY (superpathway of D-glucarate and D-galactarate degradation)135940.4597
PWY-5855 (ubiquinone-7 biosynthesis (prokaryotic))1911170.4593
PWY-3162 (tryptophan degradation V (side chain pathway))94740.4523
PWY0-541 (cyclopropane fatty acid (CFA) biosynthesis)3001530.4494
P601-PWY (D-camphor degradation)95740.4475
POLYISOPRENSYN-PWY (polyisoprenoid biosynthesis (E. coli))116840.4472
PWY0-981 (taurine degradation IV)106790.4443
GALACTARDEG-PWY (D-galactarate degradation I)151990.4440
DAPLYSINESYN-PWY (lysine biosynthesis I)3421640.4408
PWY0-845 (superpathway of pyridoxal 5'-phosphate biosynthesis and salvage)3291600.4384
REDCITCYC (TCA cycle variation II)1741070.4332
KDOSYN-PWY (KDO transfer to lipid IVA I)1801090.4305
PWY-5084 (2-ketoglutarate dehydrogenase complex)3261580.4304
KDO-NAGLIPASYN-PWY (superpathway of KDO2-lipid A biosynthesis)1791080.4258
CHOLINE-BETAINE-ANA-PWY (choline degradation I)135900.4256
SULFATE-CYS-PWY (superpathway of sulfate assimilation and cysteine biosynthesis)3651680.4252
BETSYN-PWY (glycine betaine biosynthesis I (Gram-negative bacteria))138910.4232
PYRIDOXSYN-PWY (pyridoxal 5'-phosphate biosynthesis I)4221810.4185
PWY-5856 (ubiquinone-9 biosynthesis (prokaryotic))2551340.4164
PWY-6196 (serine racemization)102740.4150
PWY-5669 (phosphatidylethanolamine biosynthesis I)4161790.4137
P344-PWY (acrylonitrile degradation)2101180.4135
PWY0-1329 (succinate to cytochrome bo oxidase electron transfer)96710.4135
UBISYN-PWY (ubiquinol-8 biosynthesis (prokaryotic))3981740.4082
PWY-46 (putrescine biosynthesis III)138890.4062
SO4ASSIM-PWY (sulfate reduction I (assimilatory))3111500.4050
P184-PWY (protocatechuate degradation I (meta-cleavage pathway))94690.4032
PWY0-1182 (trehalose degradation II (trehalase))70570.4028
PWY-5340 (sulfate activation for sulfonation)3851700.4025



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PAIRWISE GENOME CONTEXT SCORE MATRIX:

  EG11191   EG10886   EG10863   EG10808   EG10251   EG10004   
EG113120.9992210.999660.9991850.9990160.9995070.99967
EG111910.9992080.9987110.9992690.9992070.99934
EG108860.9985160.9989870.9993610.999597
EG108630.999340.9987690.998929
EG108080.9989310.999263
EG102510.999878
EG10004



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PAIRWISE BLAST SCORES:

  EG11312   EG11191   EG10886   EG10863   EG10808   EG10251   EG10004   
EG113120.0f0------
EG11191-0.0f0-----
EG10886--0.0f0----
EG10863---0.0f0---
EG10808----0.0f0--
EG10251-----0.0f0-
EG10004------0.0f0



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PATHWAYS OR PROTEIN COMPLEX MATCHES IN TARGET ORG:

For each case, all genes involved in the pathway or complex are listed. For each gene we list: a tag indicating whether the gene is part of the candidate list or not, the average and the minimum scores of the gene to the candidate list, the gene name, and its product names.



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GENOME CONTEXT INFORMATION:

Each row corresponds to a replicon in an organism, each column to a gene in the candidate. The second column indicates whether the organims was included in the list used to compute the genome context scores or not. Some organisms are not included because they are phylogenetically too similar to others already in the list.
The number in the matrix indicate the position of the homolog of the gene in the replicon. All numbers are relative to the smaller one, which is assigned a position of zero. Two columns with the same number indicate that the two genes matched the same gene in that organism.

Genome browser links for gene clusters

The links below opens a genome browser BioCyc page for each cluster of genes in the target genome. These pages shows the central gene of the cluster in the target genome and its best homolog in the reference genomes, for the genomes that contain homologs for at least 75% of the genes in the group. Only one genome per phylogenetic cluster of organisms is shown, to keep the list smaller.

EG10004 EG10251 EG10808 EG10863 EG10886 EG11191 EG11312 (centered at EG10251)


ORG:REPLICON:CIRC?\GENE  IN REF LIST  EG11312   EG11191   EG10886   EG10863   EG10808   EG10251   EG10004   
329/623145/623412/623406/623401/623408/623419/623
AAEO224324:0:Tyes9761388-49511920416
AAUR290340:2:Tyes--1928761-0-
AAVE397945:0:Tyes3424378130893234010241023
ABAC204669:0:Tyes---0--2176
ABAU360910:0:Tyes101117731089531178407
ABOR393595:0:Tyes8390167
ABUT367737:0:Tyes--0----
ACAU438753:0:Tyes--03795-1663408
ACEL351607:0:Tyes---393-1110
ACRY349163:8:Tyes968-10500-6564
ADEH290397:0:Tyes---2279-01277
AEHR187272:0:Tyes238979623662171025712572
AFER243159:0:Tyes2204-0314-22062205
AFUL224325:0:Tyes---01235--
AHYD196024:0:Tyes3043922392112
ALAI441768:0:Tyes0----792-
AMAR234826:0:Tyes-----0-
AMAR329726:9:Tyes---270729250600
AMET293826:0:Tyes1380--82323001873
ANAE240017:0:Tyes--01602212--
AORE350688:0:Tyes1201--0--863
APER272557:0:Tyes---0940--
APHA212042:0:Tyes--0--19-
APLE416269:0:Tyes195919561960027019571958
APLE434271:0:Tno198119781982027519791980
ASAL382245:5:Tyes3984398739830139863985
ASP1667:3:Tyes-025581206-256871
ASP232721:2:Tyes311935030586800759758
ASP62928:0:Tyes1-02863256232
ASP62977:0:Tyes2860-414032277992859
ASP76114:2:Tyes231882141866145801
AVAR240292:3:Tyes--025402226-3684
BABO262698:0:Tno------0
BABO262698:1:Tno--17500-1431-
BAMB339670:3:Tno1739233817400-17531752
BAMB398577:3:Tno1580216815810-15941593
BAMY326423:0:Tyes955-12990--0
BANT260799:0:Tno639-06672411111
BANT261594:2:Tno660-06882411311
BANT568206:2:Tyes4114-1144141890103
BANT592021:2:Tno672-06982411311
BAPH198804:0:Tyes--0--455-
BAPH372461:0:Tyes--0--311-
BBAC264462:0:Tyes---15930524-
BBAC360095:0:Tyes704-0--1011185
BBRO257310:0:Tyes109223781204791238906
BCAN483179:0:Tno------0
BCAN483179:1:Tno--18180-1482-
BCEN331271:2:Tno1395198813960-14091408
BCEN331272:3:Tyes1501209615020-15151514
BCER226900:1:Tyes--063025-11
BCER288681:0:Tno3664-308537020-3096
BCER315749:1:Tyes636--6678-0
BCER405917:1:Tyes3647-302536820-3037
BCER572264:1:Tno3839-324338680-3254
BCIC186490:0:Tyes--0-234
BCLA66692:0:Tyes306--345-5380
BFRA272559:1:Tyes--2155-16802501
BFRA295405:0:Tno--2134-18702695
BHAL272558:0:Tyes534--572--0
BHEN283166:0:Tyes752-1433--13150
BHER314723:0:Fyes------0
BJAP224911:0:Fyes--05178025603604
BLIC279010:0:Tyes1128--11790-15
BLON206672:0:Tyes---04961155-
BMAL243160:1:Tno11810501190-132131
BMAL320388:1:Tno1785204417860-18001799
BMAL320389:1:Tyes13014501310-146145
BMEL224914:0:Tno------0
BMEL224914:1:Tno--01763-311-
BMEL359391:0:Tno------0
BMEL359391:1:Tno--16840-1375-
BOVI236:0:Tyes------0
BOVI236:1:Tyes--15770-1287-
BPAR257311:0:Tno104-011922230230234
BPER257313:0:Tyes7751114981094019971235
BPET94624:0:Tyes27559291918590-2412
BPSE272560:1:Tyes71907182379-705706
BPSE320372:1:Tno78707862784-772773
BPSE320373:1:Tno77507742666-760761
BPUM315750:0:Tyes972--10190-14
BQUI283165:0:Tyes527-1097--9900
BSP107806:2:Tyes--0-465466-
BSP36773:2:Tyes1767238517680-17811780
BSP376:0:Tyes590-5179362110
BSUB:0:Tyes1292-2713290-15
BSUI204722:0:Tyes------0
BSUI204722:1:Tyes--17770-1451-
BSUI470137:0:Tno-----890
BSUI470137:1:Tno--16300---
BTHA271848:1:Tno62106201411-607608
BTHE226186:0:Tyes--0--2595457
BTHU281309:1:Tno3625-304036550-3051
BTHU412694:1:Tno541-056823-11
BTRI382640:1:Tyes--1979--17940
BTUR314724:0:Fyes------0
BVIE269482:7:Tyes1649224716500-16631662
BWEI315730:4:Tyes607-063526-11
CABO218497:0:Tyes--103--0-
CACE272562:1:Tyes1239---014191712
CAULO:0:Tyes--5130-36153614
CBEI290402:0:Tyes0---512165647
CBLO203907:0:Tyes--0--1-
CBLO291272:0:Tno--0--21
CBOT36826:1:Tno1751----01257
CBOT441770:0:Tyes1732----01098
CBOT441771:0:Tno1592----01068
CBOT441772:1:Tno1698----01224
CBOT498213:1:Tno1776----01194
CBOT508765:1:Tyes113--02107310757
CBOT515621:2:Tyes1950----01442
CBOT536232:0:Tno1947----01381
CBUR227377:1:Tyes--07-1570
CBUR360115:1:Tno--09-2624
CBUR434922:2:Tno808-809801-8070
CCAV227941:1:Tyes--320-0213-
CCHL340177:0:Tyes0-228--83101
CCON360104:2:Tyes--0----
CCUR360105:0:Tyes--0----
CDES477974:0:Tyes1431--147508951564
CDIF272563:1:Tyes0--2190-12791467
CDIP257309:0:Tyes--010021238557476
CEFF196164:0:Fyes--014901704878796
CFEL264202:1:Tyes--3130-422-
CFET360106:0:Tyes--0----
CGLU196627:0:Tyes--0161418881005-
CHUT269798:0:Tyes--622--02945
CHYD246194:0:Tyes33--13116001151
CJAP155077:0:Tyes32533257324603259-3254
CJEI306537:0:Tyes--13853030917845
CJEJ192222:0:Tyes--0----
CJEJ195099:0:Tno--0----
CJEJ354242:2:Tyes--0----
CJEJ360109:0:Tyes--0----
CJEJ407148:0:Tno--0----
CKLU431943:1:Tyes0--2562-270493
CKOR374847:0:Tyes---12260--
CMAQ397948:0:Tyes---0398--
CMET456442:0:Tyes----0--
CMIC31964:2:Tyes--27101794013651722
CMIC443906:2:Tyes--2514832012071331
CMUR243161:1:Tyes--1300-332-
CNOV386415:0:Tyes0----771554
CPEL335992:0:Tyes--0--196197
CPER195102:1:Tyes404--552--0
CPER195103:0:Tno390--494--0
CPER289380:3:Tyes388--484--0
CPHY357809:0:Tyes----0750-
CPNE115711:1:Tyes--0--281-
CPNE115713:0:Tno--277--0-
CPNE138677:0:Tno--278--0-
CPNE182082:0:Tno--289--0-
CPRO264201:0:Fyes1529-410--0-
CPSY167879:0:Tyes-699701-70
CRUT413404:0:Tyes--185-187-0
CSAL290398:0:Tyes11402402381110
CSP501479:6:Fyes-----01
CSP501479:7:Fyes163--0---
CSP501479:8:Fyes--0-1140--
CSP78:1:Tyes0------
CSP78:2:Tyes--39980-49394940
CSUL444179:0:Tyes--0----
CTEP194439:0:Tyes399-1382--11910
CTET212717:0:Tyes795----07
CTRA471472:0:Tyes--1240-328-
CTRA471473:0:Tno--1240-328-
CVES412965:0:Tyes--155-156-0
CVIO243365:0:Tyes0-395800122121
DARO159087:0:Tyes304951430503761030473048
DDES207559:0:Tyes----302014060
DETH243164:0:Tyes991--827732-0
DGEO319795:1:Tyes---19390-2166
DHAF138119:0:Tyes679--7253500222
DNOD246195:0:Tyes742-0592831744743
DOLE96561:0:Tyes5030--303228801423
DPSY177439:2:Tyes0-100258022621951992
DRAD243230:3:Tyes---11230--
DRED349161:0:Tyes2062--2200-01211
DSHI398580:5:Tyes989-0884-393394
DSP216389:0:Tyes886--717--0
DSP255470:0:Tno903--729--0
DVUL882:1:Tyes----59401001
ECAN269484:0:Tyes--16--0-
ECAR218491:0:Tyes5260134
ECHA205920:0:Tyes-----0-
ECOL199310:0:Tno1406532
ECOL316407:0:Tno415-023
ECOL331111:6:Tno1406532
ECOL362663:0:Tno1406532
ECOL364106:1:Tno1406532
ECOL405955:2:Tyes03-5421
ECOL409438:6:Tyes1406532
ECOL413997:0:Tno1406532
ECOL439855:4:Tno1406532
ECOL469008:0:Tno5260134
ECOL481805:0:Tno5260134
ECOL585034:0:Tno2507643
ECOL585035:0:Tno1406532
ECOL585055:0:Tno1406532
ECOL585056:2:Tno1406532
ECOL585057:0:Tno1407632
ECOL585397:0:Tno1406532
ECOL83334:0:Tno1406532
ECOLI:0:Tno1406532
ECOO157:0:Tno1406532
EFAE226185:3:Tyes1698-18810569--
EFER585054:1:Tyes1407632
ELIT314225:0:Tyes313-13520-912-
ERUM254945:0:Tyes--18--0-
ERUM302409:0:Tno--17--0-
ESP42895:1:Tyes5260134
FALN326424:0:Tyes-2694-43409934080
FJOH376686:0:Tyes--3945--02429
FMAG334413:1:Tyes0----436332
FNOD381764:0:Tyes0-----1316
FNUC190304:0:Tyes---0-1306989
FPHI484022:1:Tyes--19515302971650
FRANT:0:Tno--11965041120761
FSP106370:0:Tyes---31407622629
FSP1855:0:Tyes---3871428834170
FSUC59374:0:Tyes--15291700-291
FTUL351581:0:Tno--2641132500512
FTUL393011:0:Tno--2461052310486
FTUL393115:0:Tyes--11745001090755
FTUL401614:0:Tyes--981502920886
FTUL418136:0:Tno--084210851195733
FTUL458234:0:Tno--2611152470512
GBET391165:0:Tyes1629-5890-131132
GFOR411154:0:Tyes--1594--26120
GKAU235909:1:Tyes1481--15290-12
GMET269799:1:Tyes-1875-29035301081
GOXY290633:5:Tyes--01168-23772378
GSUL243231:0:Tyes0562-140112441202734
GTHE420246:1:Tyes1502--15480-7
GURA351605:0:Tyes22161496-35616701022
GVIO251221:0:Tyes2419---0395-
HACI382638:1:Tyes-----0-
HARS204773:0:Tyes21662659216718380628629
HAUR316274:2:Tyes0-----3542
HBUT415426:0:Tyes---4460--
HCHE349521:0:Tyes1489805144514632
HDUC233412:0:Tyes38038337901271382381
HHAL349124:0:Tyes1335-13480132613321333
HHEP235279:0:Tyes--1169--0-
HINF281310:0:Tyes69169469010693692
HINF374930:0:Tyes94694394701944945
HINF71421:0:Tno67067366910672671
HMAR272569:8:Tyes----0--
HMOD498761:0:Tyes2424--0-21651798
HMUK485914:1:Tyes----0--
HNEP81032:0:Tyes--22948-01
HPY:0:Tno-----0-
HPYL357544:1:Tyes-----0-
HPYL85963:0:Tno-----0-
HSAL478009:4:Tyes----0--
HSOM205914:1:Tyes3041158-12
HSOM228400:0:Tno304327-12
HSP64091:2:Tno----0--
HWAL362976:1:Tyes----0--
IHOS453591:0:Tyes---0289382-
ILOI283942:0:Tyes3042241224212
JSP290400:1:Tyes--32550-709708
JSP375286:0:Tyes24033085240411650651652
KPNE272620:2:Tyes1407632
KRAD266940:2:Fyes--12882337190703130
LACI272621:0:Tyes------0
LBIF355278:2:Tyes-14080-1358487-
LBIF456481:2:Tno-14510-1398504-
LBOR355276:1:Tyes--430-01155-
LBOR355277:1:Tno--0-221340-
LBRE387344:2:Tyes----1179-0
LCAS321967:1:Tyes0---189-365
LCHO395495:0:Tyes1560212166353621292130
LGAS324831:0:Tyes----0-174
LHEL405566:0:Tyes----348-0
LINN272626:1:Tno383901-0770-764
LINT189518:1:Tyes--1051-18810-
LINT267671:1:Tno--671-01454-
LINT363253:3:Tyes----9070-
LJOH257314:0:Tyes----383-0
LLAC272622:5:Tyes854---9180-
LLAC272623:0:Tyes831---8920-
LMES203120:1:Tyes----0-12
LMON169963:0:Tno312--0622-616
LMON265669:0:Tyes321739-0606-600
LPLA220668:0:Tyes------0
LPNE272624:0:Tno2006-0153072320042005
LPNE297245:1:Fno1887-0146568818851886
LPNE297246:1:Fyes2010-0145265920082009
LPNE400673:0:Tno1290-2147808012921291
LREU557436:0:Tyes----0-1093
LSAK314315:0:Tyes162---27010090
LSPH444177:1:Tyes1987--2077-0-
LWEL386043:0:Tyes369--0657-651
LXYL281090:0:Tyes--12252931106064
MABS561007:1:Tyes--01152-26812496
MACE188937:0:Tyes200--01491--
MAEO419665:0:Tyes----0--
MAER449447:0:Tyes1247-0-2473--
MAQU351348:2:Tyes2986292529872029842985
MART243272:0:Tyes--0----
MAVI243243:0:Tyes--32780319520091807
MBAR269797:1:Tyes0--1931167--
MBOV233413:0:Tno--17131001023581053
MBOV410289:0:Tno--1669993023121044
MBUR259564:0:Tyes170--0786--
MCAP243233:0:Tyes--0657386425426
MEXT419610:0:Tyes--25920-11373532
MFLA265072:0:Tyes272221026902436270271
MFLO265311:0:Tyes--0----
MGIL350054:3:Tyes--2341291028802682
MHUN323259:0:Tyes1601---0--
MHYO262719:0:Tyes--0----
MHYO262722:0:Tno--0----
MHYO295358:0:Tno--0----
MJAN243232:2:Tyes----0--
MKAN190192:0:Tyes---0704--
MLAB410358:0:Tyes----0--
MLEP272631:0:Tyes---403-3040
MLOT266835:2:Tyes--3151135-17160
MMAG342108:0:Tyes---4297-01
MMAR267377:0:Tyes----0--
MMAR368407:0:Tyes0---956--
MMAR394221:0:Tyes0-12461951-2013-
MMAR402880:1:Tyes----0--
MMAR426368:0:Tyes----0--
MMAR444158:0:Tyes----0--
MMAZ192952:0:Tyes2706--25370--
MMOB267748:0:Tyes--0----
MPEN272633:0:Tyes-----0-
MPET420662:1:Tyes260141310282611024752476
MPUL272635:0:Tyes--0----
MSED399549:0:Tyes---01877--
MSME246196:0:Tyes--3268211437130285
MSP164756:1:Tno--2568167129680185
MSP164757:0:Tno--2949166233430235
MSP189918:2:Tyes--2607169730090186
MSP266779:3:Tyes0-16232571-26182610
MSP400668:0:Tyes51103811034
MSP409:2:Tyes--0559-13342506
MSTA339860:0:Tyes---2150--
MSUC221988:0:Tyes-174517511017461747
MSYN262723:0:Tyes--0----
MTBCDC:0:Tno--18011046025021102
MTBRV:0:Tno--1692974023451025
MTHE187420:0:Tyes---01176--
MTHE264732:0:Tyes17--0--361
MTHE349307:0:Tyes---550--
MTUB336982:0:Tno--1696983023091033
MTUB419947:0:Tyes--1744998024241052
MVAN350058:0:Tyes--3015180632660200
MXAN246197:0:Tyes0-44204925831142355
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