CANDIDATE ID: 364

CANDIDATE ID: 364

NUMBER OF GENES: 7
AVERAGE SCORE:    9.9920310e-1 (range=[0.0,1.0])
AVERAGE MINIMUM BLAST P-VAL:    1.0000000e+0

Gene List
List of organisms containing most genes from the group
    Phylogenetic tree highlighting these organisms (opens new page)
List of organisms containing very few or no genes from the group
List of organisms enriched for group
List of organisms depleted for group
Phylogenetic profile similarity with known pathways
Pairwise genome context scores
Pairwise Blast scores
Pathway or protein complex matches in target organism
Genome context matrix
    Genes and their orthologs in genome browser BioCyc pages



GENE LIST:

- EG11312 (yicR) (b3638)
   Products of gene:
     - EG11312-MONOMER (hypothetical protein)

- EG11191 (slmA) (b3641)
   Products of gene:
     - EG11191-MONOMER (cell division inhibitor)

- EG10886 (rpmB) (b3637)
   Products of gene:
     - EG10886-MONOMER (50S ribosomal subunit protein L28)
     - CPLX0-3962 (50S ribosomal subunit)
     - CPLX0-3964 (ribosome)

- EG10863 (rph) (b3643)
   Products of gene:
     - EG10863-MONOMER (RNase PH monomer)
     - CPLX0-1081 (RNase PH)
       Reactions:
        a tRNA precursor with a short 3' extension + n phosphate  ->  an uncharged tRNA + n a ribonucleoside diphosphate
         In pathways
         PWY0-1479 (tRNA processing pathway)
        a tRNA precursor with a 5' extension and a short 3' extension + n phosphate  ->  a tRNA precursor with a 5' extension + n a nucleoside diphosphate
         In pathways
         PWY0-1479 (tRNA processing pathway)
        phosphate  =  a nucleoside diphosphate

- EG10329 (mutM) (b3635)
   Products of gene:
     - EG10329-MONOMER (formamidopyrimidine DNA glycosylase)
       Reactions:
        a damaged DNA (purine or pyrimidine)  =  an AP(apurinic or apyrimidinic) site created by glycosylic bond cleavage

- EG10251 (dut) (b3640)
   Products of gene:
     - DUTP-PYROP-MONOMER (Dut)
     - DUTP-PYROP-CPLX (deoxyuridine triphosphatase)
       Reactions:
        dUTP + H2O  ->  dUMP + diphosphate + H+
         In pathways
         PWY0-166 (pyrimidine deoxyribonucleotides de novo biosynthesis I)
         PWY-6545 (PWY-6545)

- EG10004 (dfp) (b3639)
   Products of gene:
     - EG10004-MONOMER (Dfp)
     - CPLX0-341 (fused 4'-phosphopantothenoylcysteine decarboxylase and phosphopantothenoylcysteine synthetase)
       Reactions:
        D-4'-phosphopantothenate + L-cysteine + CTP  ->  diphosphate + CMP + R-4'-phosphopantothenoyl-L-cysteine + H+
         In pathways
         PANTOSYN-PWY (pantothenate and coenzyme A biosynthesis I)
         PWY-4221 (PWY-4221)
         PWY-4242 (PWY-4242)
         COA-PWY (coenzyme A biosynthesis)
        R-4'-phosphopantothenoyl-L-cysteine + H+  ->  4'-phosphopantetheine + CO2
         In pathways
         PANTOSYN-PWY (pantothenate and coenzyme A biosynthesis I)
         PWY-4221 (PWY-4221)
         PWY-4242 (PWY-4242)
         COA-PWY (coenzyme A biosynthesis)



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ORGANISMS CONTAINING AT LEAST 6 GENES FROM THE GROUP:

Total number of orgs: 189
Effective number of orgs (counting one per cluster within 468 clusters): 125

Organism list
Homologs in each organism in the list
Features enriched in organism list


Follow (ncbi) link, when present, to find the set of organism features for each organism
Org ID  Org Name  # genes in group found in org  
YPSE349747 ncbi Yersinia pseudotuberculosis IP 317587
YPSE273123 ncbi Yersinia pseudotuberculosis IP 329537
YPES386656 ncbi Yersinia pestis Pestoides F7
YPES377628 ncbi Yersinia pestis Nepal5167
YPES360102 ncbi Yersinia pestis Antiqua7
YPES349746 ncbi Yersinia pestis Angola7
YPES214092 ncbi Yersinia pestis CO927
YPES187410 ncbi Yersinia pestis KIM 106
YENT393305 ncbi Yersinia enterocolitica enterocolitica 80817
XORY360094 ncbi Xanthomonas oryzae pv. oryzae PXO99A6
XORY342109 ncbi Xanthomonas oryzae pv. oryzae MAFF 3110186
XFAS405440 ncbi Xylella fastidiosa M126
XFAS183190 ncbi Xylella fastidiosa Temecula16
XFAS160492 ncbi Xylella fastidiosa 9a5c6
XCAM487884 Xanthomonas campestris pv. paulliniae6
XCAM316273 ncbi Xanthomonas campestris pv. vesicatoria str. 85-106
XCAM314565 ncbi Xanthomonas campestris pv. campestris str. 80046
XCAM190485 ncbi Xanthomonas campestris pv. campestris str. ATCC 339136
XAXO190486 ncbi Xanthomonas axonopodis pv. citri str. 3066
VVUL216895 ncbi Vibrio vulnificus CMCP66
VVUL196600 ncbi Vibrio vulnificus YJ0166
VPAR223926 ncbi Vibrio parahaemolyticus RIMD 22106336
VFIS312309 ncbi Vibrio fischeri ES1146
VCHO345073 ncbi Vibrio cholerae O3956
VCHO ncbi Vibrio cholerae O1 biovar El Tor str. N169616
TTUR377629 ncbi Teredinibacter turnerae T79016
TDEN292415 ncbi Thiobacillus denitrificans ATCC 252597
STYP99287 ncbi Salmonella enterica enterica serovar Typhimurium str. LT27
SSP94122 ncbi Shewanella sp. ANA-37
SSP644076 Silicibacter sp. TrichCH4B6
SSP292414 ncbi Ruegeria sp. TM10406
SSON300269 ncbi Shigella sonnei Ss0466
SSED425104 ncbi Shewanella sediminis HAW-EB37
SPRO399741 ncbi Serratia proteamaculans 5687
SPEA398579 ncbi Shewanella pealeana ATCC 7003457
SONE211586 ncbi Shewanella oneidensis MR-17
SLOI323850 ncbi Shewanella loihica PV-47
SLAC55218 Ruegeria lacuscaerulensis6
SHIGELLA ncbi Shigella flexneri 2a str. 2457T7
SHAL458817 ncbi Shewanella halifaxensis HAW-EB47
SGLO343509 ncbi Sodalis glossinidius morsitans6
SFLE373384 ncbi Shigella flexneri 5 str. 84016
SFLE198214 ncbi Shigella flexneri 2a str. 3017
SENT454169 ncbi Salmonella enterica enterica serovar Heidelberg str. SL4767
SENT321314 ncbi Salmonella enterica enterica serovar Choleraesuis str. SC-B677
SENT295319 ncbi Salmonella enterica enterica serovar Paratyphi A str. ATCC 91507
SENT220341 ncbi Salmonella enterica enterica serovar Typhi str. CT187
SENT209261 ncbi Salmonella enterica enterica serovar Typhi str. Ty27
SDYS300267 ncbi Shigella dysenteriae Sd1977
SDEN318161 ncbi Shewanella denitrificans OS2177
SDEG203122 ncbi Saccharophagus degradans 2-406
SBOY300268 ncbi Shigella boydii Sb2277
SBAL402882 ncbi Shewanella baltica OS1857
SBAL399599 ncbi Shewanella baltica OS1957
RSPH272943 ncbi Rhodobacter sphaeroides 2.4.16
RSOL267608 ncbi Ralstonia solanacearum GMI10007
RPOM246200 ncbi Ruegeria pomeroyi DSS-36
RMET266264 ncbi Ralstonia metallidurans CH346
RFER338969 ncbi Rhodoferax ferrireducens T1187
REUT381666 ncbi Ralstonia eutropha H167
REUT264198 ncbi Ralstonia eutropha JMP1347
RETL347834 ncbi Rhizobium etli CFN 426
RDEN375451 ncbi Roseobacter denitrificans OCh 1146
PSYR223283 ncbi Pseudomonas syringae pv. tomato str. DC30007
PSYR205918 ncbi Pseudomonas syringae pv. syringae B728a7
PSTU379731 ncbi Pseudomonas stutzeri A15016
PSP56811 Psychrobacter sp.6
PSP312153 ncbi Polynucleobacter necessarius asymbioticus QLW-P1DMWA-17
PSP296591 ncbi Polaromonas sp. JS6667
PPUT76869 ncbi Pseudomonas putida GB-16
PPUT351746 ncbi Pseudomonas putida F16
PPUT160488 ncbi Pseudomonas putida KT24406
PPRO298386 ncbi Photobacterium profundum SS96
PMUL272843 ncbi Pasteurella multocida multocida Pm707
PMEN399739 ncbi Pseudomonas mendocina ymp6
PLUM243265 ncbi Photorhabdus luminescens laumondii TTO17
PING357804 ncbi Psychromonas ingrahamii 377
PHAL326442 ncbi Pseudoalteromonas haloplanktis TAC1256
PFLU220664 ncbi Pseudomonas fluorescens Pf-56
PFLU216595 ncbi Pseudomonas fluorescens SBW257
PFLU205922 ncbi Pseudomonas fluorescens Pf0-16
PENT384676 ncbi Pseudomonas entomophila L486
PCAR338963 ncbi Pelobacter carbinolicus DSM 23806
PATL342610 ncbi Pseudoalteromonas atlantica T6c6
PARC259536 ncbi Psychrobacter arcticus 273-46
PAER208964 ncbi Pseudomonas aeruginosa PAO16
PAER208963 ncbi Pseudomonas aeruginosa UCBPP-PA146
OCAR504832 ncbi Oligotropha carboxidovorans OM56
NOCE323261 ncbi Nitrosococcus oceani ATCC 197076
NMUL323848 ncbi Nitrosospira multiformis ATCC 251967
NMEN272831 ncbi Neisseria meningitidis FAM186
NMEN122587 ncbi Neisseria meningitidis Z24916
NMEN122586 ncbi Neisseria meningitidis MC586
NGON242231 ncbi Neisseria gonorrhoeae FA 10906
NEUT335283 ncbi Nitrosomonas eutropha C917
NEUR228410 ncbi Nitrosomonas europaea ATCC 197186
MSUC221988 ncbi Mannheimia succiniciproducens MBEL55E6
MSP400668 ncbi Marinomonas sp. MWYL17
MSP266779 ncbi Chelativorans sp. BNC16
MPET420662 ncbi Methylibium petroleiphilum PM17
MFLA265072 ncbi Methylobacillus flagellatus KT7
MAQU351348 ncbi Marinobacter aquaeolei VT87
LPNE400673 ncbi Legionella pneumophila Corby6
LPNE297246 ncbi Legionella pneumophila Paris6
LPNE297245 ncbi Legionella pneumophila Lens6
LPNE272624 ncbi Legionella pneumophila pneumophila Philadelphia 16
LCHO395495 ncbi Leptothrix cholodnii SP-67
KPNE272620 ncbi Klebsiella pneumoniae pneumoniae MGH 785787
JSP375286 ncbi Janthinobacterium sp. Marseille7
ILOI283942 ncbi Idiomarina loihiensis L2TR7
HSOM228400 ncbi Haemophilus somnus 23367
HSOM205914 ncbi Haemophilus somnus 129PT7
HINF71421 ncbi Haemophilus influenzae Rd KW207
HINF374930 ncbi Haemophilus influenzae PittEE7
HINF281310 ncbi Haemophilus influenzae 86-028NP7
HHAL349124 ncbi Halorhodospira halophila SL16
HDUC233412 ncbi Haemophilus ducreyi 35000HP7
HCHE349521 ncbi Hahella chejuensis KCTC 23967
HARS204773 ncbi Herminiimonas arsenicoxydans7
GURA351605 ncbi Geobacter uraniireducens Rf46
GSUL243231 ncbi Geobacter sulfurreducens PCA6
GBET391165 ncbi Granulibacter bethesdensis CGDNIH16
ESP42895 Enterobacter sp.7
EFER585054 ncbi Escherichia fergusonii ATCC 354697
ECOO157 ncbi Escherichia coli O157:H7 EDL9337
ECOL83334 Escherichia coli O157:H77
ECOL585397 ncbi Escherichia coli ED1a7
ECOL585057 ncbi Escherichia coli IAI397
ECOL585056 ncbi Escherichia coli UMN0267
ECOL585055 ncbi Escherichia coli 559897
ECOL585035 ncbi Escherichia coli S887
ECOL585034 ncbi Escherichia coli IAI17
ECOL481805 ncbi Escherichia coli ATCC 87397
ECOL469008 ncbi Escherichia coli BL21(DE3)7
ECOL439855 ncbi Escherichia coli SMS-3-57
ECOL413997 ncbi Escherichia coli B str. REL6067
ECOL409438 ncbi Escherichia coli SE117
ECOL405955 ncbi Escherichia coli APEC O16
ECOL364106 ncbi Escherichia coli UTI897
ECOL362663 ncbi Escherichia coli 5367
ECOL331111 ncbi Escherichia coli E24377A7
ECOL316407 ncbi Escherichia coli K-12 substr. W31106
ECOL199310 ncbi Escherichia coli CFT0737
ECAR218491 ncbi Pectobacterium atrosepticum SCRI10437
DSHI398580 ncbi Dinoroseobacter shibae DFL 126
DPSY177439 ncbi Desulfotalea psychrophila LSv546
DNOD246195 ncbi Dichelobacter nodosus VCS1703A6
DARO159087 ncbi Dechloromonas aromatica RCB7
CVIO243365 ncbi Chromobacterium violaceum ATCC 124726
CSP78 Caulobacter sp.6
CSP501479 Citreicella sp. SE456
CSAL290398 ncbi Chromohalobacter salexigens DSM 30437
CJAP155077 Cellvibrio japonicus6
BVIE269482 ncbi Burkholderia vietnamiensis G47
BTHA271848 ncbi Burkholderia thailandensis E2647
BSP376 Bradyrhizobium sp.6
BSP36773 Burkholderia sp.7
BPSE320373 ncbi Burkholderia pseudomallei 6687
BPSE320372 ncbi Burkholderia pseudomallei 1710b7
BPSE272560 ncbi Burkholderia pseudomallei K962437
BPET94624 Bordetella petrii6
BPER257313 ncbi Bordetella pertussis Tohama I7
BPAR257311 ncbi Bordetella parapertussis 128227
BMAL320389 ncbi Burkholderia mallei NCTC 102477
BMAL320388 ncbi Burkholderia mallei SAVP17
BMAL243160 ncbi Burkholderia mallei ATCC 233447
BCEN331272 ncbi Burkholderia cenocepacia HI24247
BCEN331271 ncbi Burkholderia cenocepacia AU 10547
BBRO257310 ncbi Bordetella bronchiseptica RB507
BANT592021 ncbi Bacillus anthracis A02486
BANT568206 ncbi Bacillus anthracis CDC 6846
BANT261594 ncbi Bacillus anthracis Ames Ancestor6
BANT260799 ncbi Bacillus anthracis Sterne6
BAMB398577 ncbi Burkholderia ambifaria MC40-67
BAMB339670 ncbi Burkholderia ambifaria AMMD7
ASP76114 ncbi Aromatoleum aromaticum EbN17
ASP62977 ncbi Acinetobacter sp. ADP16
ASP62928 ncbi Azoarcus sp. BH726
ASP232721 ncbi Acidovorax sp. JS427
ASAL382245 ncbi Aeromonas salmonicida salmonicida A4497
APLE434271 ncbi Actinobacillus pleuropneumoniae serovar 3 str. JL037
APLE416269 ncbi Actinobacillus pleuropneumoniae L207
AHYD196024 Aeromonas hydrophila dhakensis7
AFER243159 ncbi Acidithiobacillus ferrooxidans ATCC 232706
AEHR187272 ncbi Alkalilimnicola ehrlichii MLHE-17
ACRY349163 ncbi Acidiphilium cryptum JF-56
ABOR393595 ncbi Alcanivorax borkumensis SK27
ABAU360910 ncbi Bordetella avium 197N7
AAVE397945 ncbi Acidovorax citrulli AAC00-17


Names of the homologs of the genes in the group in each of these orgs
  EG11312   EG11191   EG10886   EG10863   EG10329   EG10251   EG10004   
YPSE349747 YPSIP31758_0061YPSIP31758_0058YPSIP31758_0062YPSIP31758_0056YPSIP31758_0064YPSIP31758_0059YPSIP31758_0060
YPSE273123 YPTB0046YPTB0043YPTB0047YPTB0041YPTB0049YPTB0044YPTB0045
YPES386656 YPDSF_3856YPDSF_3859YPDSF_3855YPDSF_3861YPDSF_3853YPDSF_3858YPDSF_3857
YPES377628 YPN_3801YPN_3804YPN_3800YPN_3806YPN_3798YPN_3803YPN_3802
YPES360102 YPA_3493YPA_3496YPA_3492YPA_3498YPA_3490YPA_3495YPA_3494
YPES349746 YPANGOLA_A0055YPANGOLA_A0052YPANGOLA_A0056YPANGOLA_A0049YPANGOLA_A0058YPANGOLA_A0053YPANGOLA_A0054
YPES214092 YPO0049YPO0046YPO0050YPO0044YPO0052YPO0047YPO0048
YPES187410 Y0092Y0095Y0097Y0090Y0094Y0093
YENT393305 YE0063YE0060YE0064YE0058YE0066YE0061YE0062
XORY360094 XOOORF_4883XOOORF_5179XOOORF_4205XOOORF_5092XOOORF_4881XOOORF_4882
XORY342109 XOO0462XOO4295XOO1040XOO0270XOO0464XOO0463
XFAS405440 XFASM12_0125XFASM12_0546XFASM12_0845XFASM12_0143XFASM12_0127XFASM12_0126
XFAS183190 PD_0117PD_0488PD_0722PD_0138PD_0119PD_0118
XFAS160492 XF0148XF1206XF1505XF0170XF0150XF0149
XCAM487884 XCC-B100_4044XCC-B100_4230XCC-B100_0933XCC-B100_4366XCC-B100_4042XCC-B100_4043
XCAM316273 XCAORF_0429XCAORF_0226XCAORF_3592XCAORF_4482XCAORF_0431XCAORF_0430
XCAM314565 XC_3944XC_4123XC_0960XC_4239XC_3942XC_3943
XCAM190485 XCC3860XCC4034XCC3251XCC4147XCC3858XCC3859
XAXO190486 XAC3915XAC4159XAC3397XAC4286XAC3913XAC3914
VVUL216895 VV1_0825VV1_0829VV1_0824VV1_0832VV1_0821VV1_0828
VVUL196600 VV0285VV0282VV0286VV0279VV0289VV0283
VPAR223926 VP0184VP0180VP0185VP0177VP0189VP0181
VFIS312309 VF0126VF0123VF0127VF0111VF0130VF0125
VCHO345073 VC0395_A2597VC0395_A2593VC0395_A2599VC0395_A2589VC0395_A2602VC0395_A2595
VCHO VC0217VC0214VC0218VC0210VC0221VC0215
TTUR377629 TERTU_0184TERTU_0188TERTU_0181TERTU_0176TERTU_0178TERTU_0185
TDEN292415 TBD_2588TBD_2389TBD_2589TBD_0477TBD_0383TBD_2586TBD_2587
STYP99287 STM3729STM3732STM3728STM3734STM3726STM3731STM3730
SSP94122 SHEWANA3_3770SHEWANA3_3773SHEWANA3_3769SHEWANA3_3777SHEWANA3_4084SHEWANA3_3772SHEWANA3_3771
SSP644076 SCH4B_3369SCH4B_3990SCH4B_3196SCH4B_3360SCH4B_1306SCH4B_1303
SSP292414 TM1040_0008TM1040_0671TM1040_2872TM1040_3029TM1040_0461TM1040_0458
SSON300269 SSO_3765SSO_3770SSO_3763SSO_3772SSO_3766SSO_3767
SSED425104 SSED_0385SSED_0382SSED_0386SSED_0378SSED_0117SSED_0383SSED_0384
SPRO399741 SPRO_4842SPRO_4845SPRO_4841SPRO_4847SPRO_4839SPRO_4844SPRO_4843
SPEA398579 SPEA_3837SPEA_3840SPEA_3836SPEA_3844SPEA_4104SPEA_3839SPEA_3838
SONE211586 SO_4248SO_4251SO_4247SO_4256SO_4726SO_4250SO_4249
SLOI323850 SHEW_3481SHEW_3484SHEW_3480SHEW_3488SHEW_3690SHEW_3483SHEW_3482
SLAC55218 SL1157_1141SL1157_0112SL1157_1093SL1157_0809SL1157_0578SL1157_0579
SHIGELLA RADCTTKRPMBRPHMUTMDUTDFP
SHAL458817 SHAL_0429SHAL_0426SHAL_0430SHAL_0422SHAL_0140SHAL_0427SHAL_0428
SGLO343509 SG2211SG2208SG2213SG2206SG2210SG2209
SFLE373384 SFV_3892SFV_3889SFV_3887SFV_3894SFV_3890SFV_3891
SFLE198214 AAN45124.1AAN45127.1AAN45123.1AAN45129.1AAN45121.1AAN45126.1AAN45125.1
SENT454169 SEHA_C4055SEHA_C4058SEHA_C4054SEHA_C4060SEHA_C4052SEHA_C4057SEHA_C4056
SENT321314 SCH_3652SCH_3655SCH_3651SCH_3657SCH_3649SCH_3654SCH_3653
SENT295319 SPA3581SPA3584SPA3580SPA3586SPA3578SPA3583SPA3582
SENT220341 STY4065STY4062STY4066STY4060STY4068STY4063STY4064
SENT209261 T3789T3786T3790T3784T3792T3787T3788
SDYS300267 SDY_4068SDY_4071SDY_4067SDY_4074SDY_4065SDY_4070SDY_4069
SDEN318161 SDEN_0326SDEN_0323SDEN_0327SDEN_0319SDEN_0210SDEN_0324SDEN_0325
SDEG203122 SDE_3678SDE_3674SDE_3679SDE_3683SDE_3681SDE_3677
SBOY300268 SBO_3640SBO_3643SBO_3639SBO_3645SBO_3637SBO_3642SBO_3641
SBAL402882 SHEW185_0376SHEW185_0373SHEW185_0377SHEW185_0369SHEW185_4324SHEW185_0374SHEW185_0375
SBAL399599 SBAL195_0388SBAL195_0385SBAL195_0389SBAL195_0381SBAL195_4464SBAL195_0386SBAL195_0387
RSPH272943 RSP_1171RSP_2016RSP_1221RSP_1339RSP_0598RSP_0599
RSOL267608 RSC2444RSC0031RSC2445RSC2159RSC0399RSC2463RSC2461
RPOM246200 SPO_0054SPO_0974SPO_0008SPO_0146SPO_0409SPO_0408
RMET266264 RMET_0142RMET_2870RMET_0852RMET_0293RMET_2889RMET_2887
RFER338969 RFER_3252RFER_3521RFER_3180RFER_1629RFER_1656RFER_2646RFER_2647
REUT381666 H16_A3033H16_A0210H16_A3034H16_A0949H16_A0377H16_A3049H16_A3048
REUT264198 REUT_A2732REUT_A0182REUT_A2733REUT_A2477REUT_A0346REUT_A2749REUT_A2747
RETL347834 RHE_CH01848RHE_CH03816RHE_CH00363RHE_CH00355RHE_CH00330RHE_CH00342
RDEN375451 RD1_3690RD1_1680RD1_0426RD1_0204RD1_1201RD1_1200
PSYR223283 PSPTO_0086PSPTO_3319PSPTO_0089PSPTO_0077PSPTO_0414PSPTO_0084PSPTO_0085
PSYR205918 PSYR_0222PSYR_3154PSYR_0224PSYR_0213PSYR_4761PSYR_0220PSYR_0221
PSTU379731 PST_0473PST_0107PST_0463PST_4007PST_0471PST_0472
PSP56811 PSYCPRWF_0491PSYCPRWF_0589PSYCPRWF_2191PSYCPRWF_0382PSYCPRWF_1826PSYCPRWF_0492
PSP312153 PNUC_1733PNUC_2012PNUC_1734PNUC_1080PNUC_1917PNUC_1743PNUC_1742
PSP296591 BPRO_0948BPRO_3979BPRO_3802BPRO_1339BPRO_1297BPRO_3178BPRO_3180
PPUT76869 PPUTGB1_5335PPUTGB1_5333PPUTGB1_5342PPUTGB1_5175PPUTGB1_5337PPUTGB1_5336
PPUT351746 PPUT_5194PPUT_5192PPUT_5202PPUT_4999PPUT_5196PPUT_5195
PPUT160488 PP_5284PP_5282PP_5294PP_5125PP_5286PP_5285
PPRO298386 PBPRA0202PBPRA0200PBPRA0203PBPRA0198PBPRA0206PBPRA0201
PMUL272843 PM1152PM1155PM1151PM1876PM1145PM1154PM1153
PMEN399739 PMEN_4376PMEN_4374PMEN_4386PMEN_4197PMEN_4378PMEN_4377
PLUM243265 PLU4865PLU4868PLU4864PLU4870PLU4857PLU4867PLU4866
PING357804 PING_0056PING_0059PING_0055PING_3479PING_0053PING_0058PING_0057
PHAL326442 PSHAA2643PSHAA2645PSHAA2642PSHAA2788PSHAA0447PSHAA2644
PFLU220664 PFL_6051PFL_6049PFL_6059PFL_5870PFL_6053PFL_6052
PFLU216595 PFLU5982PFLU4083PFLU5980PFLU5991PFLU5793PFLU5984PFLU5983
PFLU205922 PFL_5539PFL_5537PFL_5547PFL_5351PFL_5541PFL_5540
PENT384676 PSEEN5431PSEEN5427PSEEN5439PSEEN0287PSEEN5433PSEEN5432
PCAR338963 PCAR_0065PCAR_2878PCAR_2030PCAR_1864PCAR_1563PCAR_2011
PATL342610 PATL_0046PATL_0044PATL_0048PATL_4282PATL_0051PATL_0045
PARC259536 PSYC_1834PSYC_1710PSYC_1865PSYC_0342PSYC_0581PSYC_1833
PAER208964 PA5319PA5316PA5334PA0357PA5321PA5320
PAER208963 PA14_70230PA14_70190PA14_70420PA14_04670PA14_70260PA14_70240
OCAR504832 OCAR_4849OCAR_4063OCAR_4413OCAR_4492OCAR_4488OCAR_4489
NOCE323261 NOC_0236NOC_2640NOC_2442NOC_2648NOC_2993NOC_2992
NMUL323848 NMUL_A2138NMUL_A1117NMUL_A2139NMUL_A0066NMUL_A0582NMUL_A2136NMUL_A2137
NMEN272831 NMC1174NMC1851NMC1430NMC1232NMC0833NMC1576
NMEN122587 NMA1448NMA2166NMA1702NMA1505NMA1112NMA1916
NMEN122586 NMB_1038NMB_0321NMB_1499NMB_1295NMB_0893NMB_1658
NGON242231 NGO0681NGO1680NGO0958NGO0610NGO0459NGO1307
NEUT335283 NEUT_0782NEUT_1933NEUT_0781NEUT_0308NEUT_2512NEUT_0784NEUT_0783
NEUR228410 NE1464NE1465NE0276NE2552NE1462NE1463
MSUC221988 MS1936MS1942MS0252MS1944MS1937MS1938
MSP400668 MMWYL1_0624MMWYL1_0620MMWYL1_0629MMWYL1_4361MMWYL1_0631MMWYL1_0622MMWYL1_0623
MSP266779 MESO_1454MESO_3074MESO_4016MESO_4100MESO_4062MESO_4055
MPET420662 MPE_A2695MPE_A0501MPE_A1117MPE_A2705MPE_A3233MPE_A2570MPE_A2571
MFLA265072 MFLA_0315MFLA_2257MFLA_0312MFLA_0043MFLA_0686MFLA_0313MFLA_0314
MAQU351348 MAQU_3564MAQU_3502MAQU_3565MAQU_0548MAQU_3749MAQU_3562MAQU_3563
LPNE400673 LPC_1989LPC_2865LPC_1496LPC_2743LPC_1991LPC_1990
LPNE297246 LPP2553LPP0544LPP1994LPP0616LPP2551LPP2552
LPNE297245 LPL2409LPL0520LPL1989LPL0599LPL2407LPL2408
LPNE272624 LPG2489LPG0479LPG2012LPG0557LPG2487LPG2488
LCHO395495 LCHO_0695LCHO_0542LCHO_0753LCHO_0705LCHO_3494LCHO_2644LCHO_2645
KPNE272620 GKPORF_B3341GKPORF_B3344GKPORF_B3340GKPORF_B3347GKPORF_B3338GKPORF_B3343GKPORF_B3342
JSP375286 MMA_2551MMA_3231MMA_2552MMA_1332MMA_3124MMA_0825MMA_0826
ILOI283942 IL0240IL0237IL0241IL2425IL0245IL0238IL0239
HSOM228400 HSM_0009HSM_0006HSM_0010HSM_0326HSM_0012HSM_0007HSM_0008
HSOM205914 HS_0144HS_0141HS_0145HS_1292HS_0146HS_0142HS_0143
HINF71421 HI_0952HI_0955HI_0951HI_0273HI_0946HI_0954HI_0953
HINF374930 CGSHIEE_07200CGSHIEE_07185CGSHIEE_07205CGSHIEE_01685CGSHIEE_07235CGSHIEE_07190CGSHIEE_07195
HINF281310 NTHI1125NTHI1128NTHI1124NTHI0381NTHI1118NTHI1127NTHI1126
HHAL349124 HHAL_2301HHAL_2314HHAL_0973HHAL_2311HHAL_2298HHAL_2299
HDUC233412 HD_0732HD_0735HD_0731HD_0301HD_0710HD_0734HD_0733
HCHE349521 HCH_01020HCH_06098HCH_01019HCH_06338HCH_00567HCH_01022HCH_01021
HARS204773 HEAR2468HEAR2984HEAR2469HEAR2126HEAR2889HEAR0842HEAR0843
GURA351605 GURA_4138GURA_3410GURA_2256GURA_3674GURA_1908GURA_2927
GSUL243231 GSU_0386GSU_0951GSU_1795GSU_0997GSU_1595GSU_1124
GBET391165 GBCGDNIH1_1654GBCGDNIH1_0614GBCGDNIH1_0025GBCGDNIH1_0159GBCGDNIH1_0156GBCGDNIH1_0157
ESP42895 ENT638_0101ENT638_0098ENT638_0102ENT638_0096ENT638_0104ENT638_0099ENT638_0100
EFER585054 EFER_3929EFER_3932EFER_3928EFER_3935EFER_3926EFER_3931EFER_3930
ECOO157 RADCTTKRPMBRPHMUTMDUTDFP
ECOL83334 ECS4513ECS4516ECS4512ECS4518ECS4510ECS4515ECS4514
ECOL585397 ECED1_4322ECED1_4325ECED1_4320ECED1_4327ECED1_4318ECED1_4324ECED1_4323
ECOL585057 ECIAI39_4156ECIAI39_4159ECIAI39_4155ECIAI39_4162ECIAI39_4153ECIAI39_4158ECIAI39_4157
ECOL585056 ECUMN_4153ECUMN_4156ECUMN_4151ECUMN_4158ECUMN_4149ECUMN_4155ECUMN_4154
ECOL585055 EC55989_4103EC55989_4106EC55989_4101EC55989_4108EC55989_4099EC55989_4105EC55989_4104
ECOL585035 ECS88_4052ECS88_4055ECS88_4051ECS88_4057ECS88_4049ECS88_4054ECS88_4053
ECOL585034 ECIAI1_3809ECIAI1_3812ECIAI1_3807ECIAI1_3814ECIAI1_3805ECIAI1_3811ECIAI1_3810
ECOL481805 ECOLC_0073ECOLC_0070ECOLC_0074ECOLC_0068ECOLC_0076ECOLC_0071ECOLC_0072
ECOL469008 ECBD_0088ECBD_0085ECBD_0089ECBD_0083ECBD_0091ECBD_0086ECBD_0087
ECOL439855 ECSMS35_3973ECSMS35_3976ECSMS35_3972ECSMS35_3978ECSMS35_3970ECSMS35_3975ECSMS35_3974
ECOL413997 ECB_03495ECB_03498ECB_03494ECB_03500ECB_03492ECB_03497ECB_03496
ECOL409438 ECSE_3918ECSE_3921ECSE_3917ECSE_3923ECSE_3915ECSE_3920ECSE_3919
ECOL405955 APECO1_2823APECO1_2820APECO1_2818APECO1_2824APECO1_2821APECO1_2822
ECOL364106 UTI89_C4182UTI89_C4185UTI89_C4181UTI89_C4187UTI89_C4178UTI89_C4184UTI89_C4183
ECOL362663 ECP_3736ECP_3739ECP_3735ECP_3741ECP_3733ECP_3738ECP_3737
ECOL331111 ECE24377A_4139ECE24377A_4142ECE24377A_4138ECE24377A_4144ECE24377A_4136ECE24377A_4141ECE24377A_4140
ECOL316407 ECK3628:JW5643:B3638ECK3631:JW5641:B3641ECK3627:JW3612:B3637ECK3625:JW3610:B3635ECK3630:JW3615:B3640ECK3629:JW5642:B3639
ECOL199310 C4462C4465C4461C4467C4459C4464C4463
ECAR218491 ECA0145ECA0142ECA0146ECA0140ECA0148ECA0143ECA0144
DSHI398580 DSHI_3569DSHI_2583DSHI_3463DSHI_3369DSHI_2975DSHI_2976
DPSY177439 DP0715DP1683DP1273DP0913DP2607DP1673
DNOD246195 DNO_0822DNO_0060DNO_0664DNO_1135DNO_0824DNO_0823
DARO159087 DARO_3142DARO_0627DARO_3143DARO_3851DARO_3726DARO_3140DARO_3141
CVIO243365 CV_3079CV_3456CV_3847CV_4062CV_3081CV_3080
CSP78 CAUL_5205CAUL_4128CAUL_0167CAUL_5075CAUL_5069CAUL_5070
CSP501479 CSE45_3579CSE45_0605CSE45_3415CSE45_3472CSE45_4340CSE45_4341
CSAL290398 CSAL_2972CSAL_2985CSAL_2971CSAL_3206CSAL_2969CSAL_2982CSAL_2981
CJAP155077 CJA_3522CJA_3526CJA_3515CJA_0203CJA_3505CJA_3523
BVIE269482 BCEP1808_2579BCEP1808_3181BCEP1808_2580BCEP1808_0914BCEP1808_2903BCEP1808_2593BCEP1808_2592
BTHA271848 BTH_I0781BTH_I0158BTH_I0780BTH_I1584BTH_I0479BTH_I0767BTH_I0768
BSP376 BRADO0713BRADO0635BRADO0173BRADO0074BRADO0078BRADO0077
BSP36773 BCEP18194_A5833BCEP18194_A6449BCEP18194_A5834BCEP18194_A4105BCEP18194_A6128BCEP18194_A5847BCEP18194_A5846
BPSE320373 BURPS668_0979BURPS668_0183BURPS668_0978BURPS668_2951BURPS668_0574BURPS668_0964BURPS668_0965
BPSE320372 BURPS1710B_A1193BURPS1710B_A0402BURPS1710B_A1192BURPS1710B_A3308BURPS1710B_A0800BURPS1710B_A1178BURPS1710B_A1179
BPSE272560 BPSL0917BPSL0198BPSL0916BPSL2565BPSL0526BPSL0903BPSL0904
BPET94624 BPET3149BPET0432BPET3313BPET2268BPET4006BPET2816
BPER257313 BP1235BP0381BP2051BP1588BP3129BP2578BP1751
BPAR257311 BPP1850BPP4049BPP1737BPP2995BPP0813BPP1976BPP1982
BMAL320389 BMA10247_2099BMA10247_3440BMA10247_2100BMA10247_1966BMA10247_2935BMA10247_2115BMA10247_2114
BMAL320388 BMASAVP1_A2646BMASAVP1_A2908BMASAVP1_A2647BMASAVP1_A0813BMASAVP1_A0083BMASAVP1_A2661BMASAVP1_A2660
BMAL243160 BMA_2230BMA_3247BMA_2231BMA_2098BMA_3115BMA_2245BMA_2244
BCEN331272 BCEN2424_2501BCEN2424_3098BCEN2424_2502BCEN2424_0997BCEN2424_2798BCEN2424_2515BCEN2424_2514
BCEN331271 BCEN_1890BCEN_2484BCEN_1891BCEN_0518BCEN_2184BCEN_1904BCEN_1903
BBRO257310 BB3258BB4522BB3371BB2961BB0897BB2164BB2170
BANT592021 BAA_4704BAA_4020BAA_4732BAA_4841BAA_4136BAA_4031
BANT568206 BAMEG_4721BAMEG_0635BAMEG_4751BAMEG_4861BAMEG_0518BAMEG_0624
BANT261594 GBAA4685GBAA3996GBAA4715GBAA4830GBAA4112GBAA4007
BANT260799 BAS4351BAS3709BAS4377BAS4481BAS3821BAS3720
BAMB398577 BAMMC406_2419BAMMC406_3007BAMMC406_2420BAMMC406_0869BAMMC406_2716BAMMC406_2433BAMMC406_2432
BAMB339670 BAMB_2548BAMB_3145BAMB_2549BAMB_0857BAMB_2858BAMB_2562BAMB_2561
ASP76114 EBA840EBA6247EBA4482C1A232EBA1401EBA837EBA838
ASP62977 ACIAD3126ACIAD0502ACIAD0050ACIAD0707ACIAD0901ACIAD3125
ASP62928 AZO1137AZO1136AZO3963AZO0759AZO1139AZO1138
ASP232721 AJS_3450AJS_0589AJS_3384AJS_0923AJS_0899AJS_1002AJS_1001
ASAL382245 ASA_4229ASA_4232ASA_4228ASA_0101ASA_4225ASA_4231ASA_4230
APLE434271 APJL_2017APJL_2014APJL_2018APJL_0055APJL_2038APJL_2015APJL_2016
APLE416269 APL_1970APL_1967APL_1971APL_0055APL_1990APL_1968APL_1969
AHYD196024 AHA_0160AHA_0157AHA_0161AHA_4224AHA_0164AHA_0158AHA_0159
AFER243159 AFE_2674AFE_0435AFE_0758AFE_0348AFE_2676AFE_2675
AEHR187272 MLG_2664MLG_1059MLG_2641MLG_2446MLG_2649MLG_2846MLG_2847
ACRY349163 ACRY_2621ACRY_2702ACRY_1664ACRY_1723ACRY_1726ACRY_1725
ABOR393595 ABO_0214ABO_0209ABO_0215ABO_0206ABO_2583ABO_0212ABO_0213
ABAU360910 BAV2405BAV3169BAV2485BAV1936BAV0533BAV1402BAV1409
AAVE397945 AAVE_3773AAVE_4136AAVE_3428AAVE_3579AAVE_3606AAVE_1329AAVE_1328


Organism features enriched in list (features available for 176 out of the 189 orgs in the list)
Feature    Pvalue       Num occurrences in list  Total num occurrences  
Arrangment:Chains 0.00113791692
Arrangment:Pairs 0.006338044112
Disease:Anthrax 0.008108744
Disease:Bubonic_plague 0.000712666
Disease:Dysentery 0.000712666
Disease:Gastroenteritis 0.00053561013
Disease:Legionnaire's_disease 0.008108744
Endospores:No 1.440e-1031211
Endospores:Yes 0.0000298453
GC_Content_Range4:0-40 4.082e-2315213
GC_Content_Range4:40-60 4.701e-11103224
GC_Content_Range4:60-100 0.001131158145
GC_Content_Range7:30-40 4.656e-1415166
GC_Content_Range7:50-60 2.090e-1162107
GC_Content_Range7:60-70 0.000093758134
Genome_Size_Range5:0-2 7.521e-225155
Genome_Size_Range5:2-4 0.000130441197
Genome_Size_Range5:4-6 6.349e-22106184
Genome_Size_Range5:6-10 0.00093962447
Genome_Size_Range9:1-2 1.563e-165128
Genome_Size_Range9:2-3 0.000963123120
Genome_Size_Range9:4-5 1.273e-85396
Genome_Size_Range9:5-6 1.395e-105388
Genome_Size_Range9:6-8 0.00004512338
Gram_Stain:Gram_Neg 9.581e-31160333
Gram_Stain:Gram_Pos 4.160e-224150
Habitat:Multiple 0.004520766178
Habitat:Specialized 0.0016816753
Motility:No 4.097e-1313151
Motility:Yes 5.297e-13120267
Optimal_temp.:- 0.002386992257
Optimal_temp.:35-37 1.257e-71313
Optimal_temp.:37 0.009915023106
Oxygen_Req:Anaerobic 2.826e-98102
Oxygen_Req:Facultative 1.522e-788201
Pathogenic_in:Animal 0.00456012966
Pathogenic_in:No 0.000027447226
Pathogenic_in:Plant 0.00052851115
Shape:Coccus 7.472e-8682
Shape:Rod 1.245e-20153347
Shape:Spiral 0.0000510134
Temp._range:Mesophilic 0.0007151156473
Temp._range:Psychrophilic 0.003771279



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ORGANISMS CONTAINING AT MOST 1 GENES FROM THE GROUP:

Total number of orgs: 94
Effective number of orgs (counting one per cluster within 468 clusters): 84

Organism list
Homologs in each organism in the list
Features enriched in organism list


Follow (ncbi) link, when present, to find the set of organism features for each organism
Org ID  Org Name  # genes in group found in org  
UURE95667 Ureaplasma urealyticum serovar 131
UURE95664 Ureaplasma urealyticum serovar 101
UPAR505682 ncbi Ureaplasma parvum serovar 3 str. ATCC 278151
UMET351160 ncbi uncultured methanogenic archaeon RC-I1
TVOL273116 ncbi Thermoplasma volcanium GSS11
TPET390874 ncbi Thermotoga petrophila RKU-11
TPEN368408 ncbi Thermofilum pendens Hrk 51
TPAL243276 ncbi Treponema pallidum pallidum Nichols1
TMAR243274 ncbi Thermotoga maritima MSB81
TKOD69014 ncbi Thermococcus kodakarensis KOD11
TDEN326298 ncbi Sulfurimonas denitrificans DSM 12511
TDEN243275 ncbi Treponema denticola ATCC 354051
TACI273075 ncbi Thermoplasma acidophilum DSM 17281
STOK273063 ncbi Sulfolobus tokodaii 71
SSUI391295 ncbi Streptococcus suis 05ZYH331
SSOL273057 ncbi Sulfolobus solfataricus P21
SMAR399550 ncbi Staphylothermus marinus F11
SFUM335543 ncbi Syntrophobacter fumaroxidans MPOB1
SACI330779 ncbi Sulfolobus acidocaldarius DSM 6391
PTOR263820 ncbi Picrophilus torridus DSM 97901
PSP117 Pirellula sp.1
PISL384616 ncbi Pyrobaculum islandicum DSM 41841
PHOR70601 ncbi Pyrococcus horikoshii OT31
PFUR186497 ncbi Pyrococcus furiosus DSM 36381
PAST100379 Onion yellows phytoplasma1
PARS340102 ncbi Pyrobaculum arsenaticum DSM 135141
PAER178306 ncbi Pyrobaculum aerophilum IM21
PABY272844 ncbi Pyrococcus abyssi GE51
NSEN222891 ncbi Neorickettsia sennetsu Miyayama1
NPHA348780 ncbi Natronomonas pharaonis DSM 21600
MTHE349307 ncbi Methanosaeta thermophila PT1
MTHE187420 ncbi Methanothermobacter thermautotrophicus Delta H1
MSYN262723 ncbi Mycoplasma synoviae 531
MSTA339860 ncbi Methanosphaera stadtmanae DSM 30911
MSED399549 ncbi Metallosphaera sedula DSM 53481
MPUL272635 ncbi Mycoplasma pulmonis UAB CTIP1
MPNE272634 ncbi Mycoplasma pneumoniae M1290
MPEN272633 ncbi Mycoplasma penetrans HF-21
MMYC272632 ncbi Mycoplasma mycoides mycoides SC str. PG10
MMOB267748 ncbi Mycoplasma mobile 163K1
MMAR444158 ncbi Methanococcus maripaludis C60
MMAR426368 ncbi Methanococcus maripaludis C70
MMAR402880 ncbi Methanococcus maripaludis C50
MMAR368407 ncbi Methanoculleus marisnigri JR11
MMAR267377 ncbi Methanococcus maripaludis S20
MLAB410358 ncbi Methanocorpusculum labreanum Z0
MKAN190192 ncbi Methanopyrus kandleri AV191
MJAN243232 ncbi Methanocaldococcus jannaschii DSM 26610
MHYO295358 ncbi Mycoplasma hyopneumoniae 2321
MHYO262722 ncbi Mycoplasma hyopneumoniae 74481
MHYO262719 ncbi Mycoplasma hyopneumoniae J1
MHUN323259 ncbi Methanospirillum hungatei JF-11
MGEN243273 ncbi Mycoplasma genitalium G370
MCAP340047 ncbi Mycoplasma capricolum capricolum ATCC 273430
MART243272 ncbi Mycoplasma arthritidis 158L3-11
MAEO419665 ncbi Methanococcus aeolicus Nankai-30
LINT363253 ncbi Lawsonia intracellularis PHE/MN1-001
LDEL390333 ncbi Lactobacillus delbrueckii bulgaricus ATCC 118421
LDEL321956 ncbi Lactobacillus delbrueckii bulgaricus ATCC BAA-3651
HWAL362976 ncbi Haloquadratum walsbyi DSM 167900
HSP64091 ncbi Halobacterium sp. NRC-10
HSAL478009 ncbi Halobacterium salinarum R10
HPYL85963 ncbi Helicobacter pylori J991
HPYL357544 ncbi Helicobacter pylori HPAG11
HPY ncbi Helicobacter pylori 266951
HMUK485914 ncbi Halomicrobium mukohataei DSM 122860
HMAR272569 ncbi Haloarcula marismortui ATCC 430490
HBUT415426 ncbi Hyperthermus butylicus DSM 54561
HACI382638 ncbi Helicobacter acinonychis Sheeba1
CSUL444179 ncbi Candidatus Sulcia muelleri GWSS1
CPHY357809 ncbi Clostridium phytofermentans ISDg1
CMET456442 ncbi Candidatus Methanoregula boonei 6A80
CMAQ397948 ncbi Caldivirga maquilingensis IC-1671
CKOR374847 ncbi Candidatus Korarchaeum cryptofilum OPF81
CJEJ407148 ncbi Campylobacter jejuni jejuni 811161
CJEJ360109 ncbi Campylobacter jejuni doylei 269.971
CJEJ354242 ncbi Campylobacter jejuni jejuni 81-1761
CJEJ195099 ncbi Campylobacter jejuni RM12211
CJEJ192222 ncbi Campylobacter jejuni jejuni NCTC 111681
CHOM360107 ncbi Campylobacter hominis ATCC BAA-3810
CFET360106 ncbi Campylobacter fetus fetus 82-401
CCUR360105 ncbi Campylobacter curvus 525.921
CCON360104 ncbi Campylobacter concisus 138261
BXEN266265 ncbi Burkholderia xenovorans LB4000
BTUR314724 ncbi Borrelia turicatae 91E1351
BHER314723 ncbi Borrelia hermsii DAH1
BGAR290434 ncbi Borrelia garinii PBi0
BBUR224326 ncbi Borrelia burgdorferi B310
BAFZ390236 ncbi Borrelia afzelii PKo0
AYEL322098 ncbi Aster yellows witches-broom phytoplasma AYWB1
AURANTIMONAS Aurantimonas manganoxydans SI85-9A10
APER272557 ncbi Aeropyrum pernix K11
AFUL224325 ncbi Archaeoglobus fulgidus DSM 43041
ABUT367737 ncbi Arcobacter butzleri RM40181


Names of the homologs of the genes in the group in each of these orgs
  EG11312   EG11191   EG10886   EG10863   EG10329   EG10251   EG10004   
UURE95667 UU413
UURE95664 UUR10_0458
UPAR505682 UPA3_0431
UMET351160 RCIX2124
TVOL273116 TVN0307
TPET390874 TPET_1235
TPEN368408 TPEN_0581
TPAL243276 TP_0885
TMAR243274 TM_1557
TKOD69014 TK1634
TDEN326298 TMDEN_1602
TDEN243275 TDE_1042
TACI273075 TA1293
STOK273063 ST0443
SSUI391295 SSU05_1396
SSOL273057 SSO0735
SMAR399550 SMAR_0859
SFUM335543 SFUM_0467
SACI330779 SACI_0610
PTOR263820 PTO0394
PSP117 RB5725
PISL384616 PISL_0836
PHOR70601 PH1549
PFUR186497 PF1568
PAST100379 PAM674
PARS340102 PARS_1937
PAER178306 PAE2207
PABY272844 PAB0420
NSEN222891 NSE_0957
NPHA348780
MTHE349307 MTHE_1362
MTHE187420 MTH683
MSYN262723 MS53_0066
MSTA339860 MSP_1251
MSED399549 MSED_0077
MPUL272635 MYPU_6960
MPNE272634
MPEN272633 MYPE1000
MMYC272632
MMOB267748 MMOB4150
MMAR444158
MMAR426368
MMAR402880
MMAR368407 MEMAR_0061
MMAR267377
MLAB410358
MKAN190192 MK0381
MJAN243232
MHYO295358 MHP259
MHYO262722 MHP7448_0122
MHYO262719 MHJ_0118
MHUN323259 MHUN_2739
MGEN243273
MCAP340047
MART243272 MART0004
MAEO419665
LINT363253 LI0088
LDEL390333 LDB1511
LDEL321956 LBUL_1406
HWAL362976
HSP64091
HSAL478009
HPYL85963 JHP0799
HPYL357544 HPAG1_0848
HPY HP0865
HMUK485914
HMAR272569
HBUT415426 HBUT_0571
HACI382638 HAC_1228
CSUL444179 SMGWSS_050
CPHY357809 CPHY_3038
CMET456442
CMAQ397948 CMAQ_0167
CKOR374847 KCR_1370
CJEJ407148 C8J_0423
CJEJ360109 JJD26997_1489
CJEJ354242 CJJ81176_0475
CJEJ195099 CJE_0500
CJEJ192222 CJ0450C
CHOM360107
CFET360106 CFF8240_0971
CCUR360105 CCV52592_0722
CCON360104 CCC13826_1345
BXEN266265
BTUR314724 BT0812
BHER314723 BH0812
BGAR290434
BBUR224326
BAFZ390236
AYEL322098 AYWB_067
AURANTIMONAS
APER272557 APE1447
AFUL224325 AF_0493
ABUT367737 ABU_1793


Organism features enriched in list (features available for 89 out of the 94 orgs in the list)
Feature    Pvalue       Num occurrences in list  Total num occurrences  
Arrangment:Pairs 0.00608249112
Arrangment:Singles 4.069e-765286
Endospores:No 1.845e-1566211
Endospores:Yes 0.0010407153
GC_Content_Range4:0-40 0.000020850213
GC_Content_Range4:60-100 0.00003298145
GC_Content_Range7:0-30 1.704e-62047
GC_Content_Range7:60-70 0.00015778134
Genome_Size_Range5:0-2 8.273e-2162155
Genome_Size_Range5:4-6 1.450e-123184
Genome_Size_Range5:6-10 0.0027219147
Genome_Size_Range9:0-1 7.200e-81627
Genome_Size_Range9:1-2 8.752e-1246128
Genome_Size_Range9:3-4 0.0027174477
Genome_Size_Range9:4-5 0.0000380396
Gram_Stain:Gram_Neg 0.000259236333
Gram_Stain:Gram_Pos 1.859e-84150
Habitat:Multiple 0.000036812178
Habitat:Specialized 0.00001542053
Motility:Yes 0.003224852267
Optimal_temp.:- 0.005439829257
Optimal_temp.:100 0.003456433
Optimal_temp.:42 0.003456433
Optimal_temp.:80 0.003456433
Optimal_temp.:85 0.000512544
Oxygen_Req:Aerobic 0.001752217185
Oxygen_Req:Anaerobic 1.943e-734102
Oxygen_Req:Microaerophilic 6.872e-61118
Pathogenic_in:Swine 0.002186345
Salinity:Extreme_halophilic 0.001153857
Shape:Irregular_coccus 2.472e-71217
Shape:Rod 1.514e-1519347
Shape:Sphere 4.337e-101519
Shape:Spiral 1.360e-102134
Temp._range:Hyperthermophilic 7.168e-121823
Temp._range:Mesophilic 5.226e-656473



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ORGANISMS ENRICHED FOR GROUP:




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ORGANISMS DEPLETED FOR GROUP:




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PHYLOGENETIC PROFILE SIMILARITY WITH KNOWN PATHWAYS:

Pathways or complexes with absolute value of Pearson coefficient with respect to candidate larger than 0.4 are listed below
The candidate is assumed to exist in orgs listed in section List of organisms containing most genes from the group


Pathway or complex  # Orgs containing it  # of those orgs also containing candidate  Pearson Coeff  
GLYCOCAT-PWY (glycogen degradation I)2461670.6598
PWY0-1241 (ADP-L-glycero-β-D-manno-heptose biosynthesis)2181540.6432
PWY-5111 (CMP-KDO biosynthesis II (from D-arabinose 5-phosphate))3001800.6218
AST-PWY (arginine degradation II (AST pathway))1201040.5985
KDO-LIPASYN-PWY (KDO2-lipid A biosynthesis I)2251490.5869
COBALSYN-PWY (adenosylcobalamin salvage from cobinamide I)1951370.5861
PWY-5918 (heme biosynthesis I)2721650.5807
PWY4FS-7 (phosphatidylglycerol biosynthesis I (plastidic))2911710.5789
PWY-1269 (CMP-KDO biosynthesis I)3251810.5760
PWY0-1319 (CDP-diacylglycerol biosynthesis II)2961720.5748
HEME-BIOSYNTHESIS-II (heme biosynthesis from uroporphyrinogen-III I)2861670.5622
PHOSLIPSYN-PWY (phospholipid biosynthesis I)2901680.5601
PWY-4041 (γ-glutamyl cycle)2791620.5432
LIPA-CORESYN-PWY (Lipid A-core biosynthesis)1761230.5398
NAGLIPASYN-PWY (lipid IVA biosynthesis)3481820.5374
3-HYDROXYPHENYLACETATE-DEGRADATION-PWY (4-hydroxyphenylacetate degradation)1491100.5304
PWY-5913 (TCA cycle variation IV)3011670.5288
GLUCARDEG-PWY (D-glucarate degradation I)1521100.5194
PWY-5857 (ubiquinone-10 biosynthesis (prokaryotic))1831230.5173
TYRFUMCAT-PWY (tyrosine degradation I)1841230.5142
PWY-5386 (methylglyoxal degradation I)3051660.5132
GLUTATHIONESYN-PWY (glutathione biosynthesis)3391760.5129
ECASYN-PWY (enterobacterial common antigen biosynthesis)1911240.5002
ENTNER-DOUDOROFF-PWY (Entner-Doudoroff pathway I)2491450.4951
GLYCOLYSIS-E-D (superpathway of glycolysis and Entner-Doudoroff)2491450.4951
PWY-5855 (ubiquinone-7 biosynthesis (prokaryotic))1911230.4927
PWY-5755 (4-hydroxybenzoate biosynthesis II (bacteria and fungi))81720.4924
GLUCONSUPER-PWY (D-gluconate degradation)2291370.4890
PWY-5148 (acyl-CoA hydrolysis)2271360.4871
GLUCARGALACTSUPER-PWY (superpathway of D-glucarate and D-galactarate degradation)135980.4834
GALACTARDEG-PWY (D-galactarate degradation I)1511040.4741
PWY0-541 (cyclopropane fatty acid (CFA) biosynthesis)3001580.4681
GALACTITOLCAT-PWY (galactitol degradation)73650.4652
PWY-3162 (tryptophan degradation V (side chain pathway))94760.4632
LIPASYN-PWY (phospholipases)2121270.4619
P601-PWY (D-camphor degradation)95760.4582
PWY0-845 (superpathway of pyridoxal 5'-phosphate biosynthesis and salvage)3291650.4560
POLYISOPRENSYN-PWY (polyisoprenoid biosynthesis (E. coli))116860.4557
DAPLYSINESYN-PWY (lysine biosynthesis I)3421680.4508
REDCITCYC (TCA cycle variation II)1741100.4453
PWY-5856 (ubiquinone-9 biosynthesis (prokaryotic))2551400.4448
PWY0-981 (taurine degradation IV)106800.4446
KDOSYN-PWY (KDO transfer to lipid IVA I)1801120.4421
KDO-NAGLIPASYN-PWY (superpathway of KDO2-lipid A biosynthesis)1791110.4375
SULFATE-CYS-PWY (superpathway of sulfate assimilation and cysteine biosynthesis)3651720.4343
PWY-5084 (2-ketoglutarate dehydrogenase complex)3261610.4341
CHOLINE-BETAINE-ANA-PWY (choline degradation I)135920.4326
P344-PWY (acrylonitrile degradation)2101220.4306
BETSYN-PWY (glycine betaine biosynthesis I (Gram-negative bacteria))138930.4300
PYRIDOXSYN-PWY (pyridoxal 5'-phosphate biosynthesis I)4221850.4256
UBISYN-PWY (ubiquinol-8 biosynthesis (prokaryotic))3981790.4235
PWY-5669 (phosphatidylethanolamine biosynthesis I)4161830.4210
SO4ASSIM-PWY (sulfate reduction I (assimilatory))3111540.4166
PWY-561 (superpathway of glyoxylate cycle)1621010.4127
PWY-5028 (histidine degradation II)130870.4087
PWY-5194 (siroheme biosynthesis)3121530.4075
PWY0-1182 (trehalose degradation II (trehalase))70580.4065
PWY-6196 (serine racemization)102740.4063
GLYOXYLATE-BYPASS (glyoxylate cycle)1691030.4062
PWY0-1329 (succinate to cytochrome bo oxidase electron transfer)96710.4050
PWY-46 (putrescine biosynthesis III)138900.4047
PWY-5340 (sulfate activation for sulfonation)3851730.4039
PWY-5783 (octaprenyl diphosphate biosynthesis)1651010.4031



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PAIRWISE GENOME CONTEXT SCORE MATRIX:

  EG11191   EG10886   EG10863   EG10329   EG10251   EG10004   
EG113120.9992210.999660.9991850.9990940.9995070.99967
EG111910.9992080.9987110.9989410.9992070.99934
EG108860.9985160.9989670.9993610.999597
EG108630.9988440.9987690.998929
EG103290.9992920.999368
EG102510.999878
EG10004



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PAIRWISE BLAST SCORES:

  EG11312   EG11191   EG10886   EG10863   EG10329   EG10251   EG10004   
EG113120.0f0------
EG11191-0.0f0-----
EG10886--0.0f0----
EG10863---0.0f0---
EG10329----0.0f0--
EG10251-----0.0f0-
EG10004------0.0f0



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PATHWAYS OR PROTEIN COMPLEX MATCHES IN TARGET ORG:

For each case, all genes involved in the pathway or complex are listed. For each gene we list: a tag indicating whether the gene is part of the candidate list or not, the average and the minimum scores of the gene to the candidate list, the gene name, and its product names.



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GENOME CONTEXT INFORMATION:

Each row corresponds to a replicon in an organism, each column to a gene in the candidate. The second column indicates whether the organims was included in the list used to compute the genome context scores or not. Some organisms are not included because they are phylogenetically too similar to others already in the list.
The number in the matrix indicate the position of the homolog of the gene in the replicon. All numbers are relative to the smaller one, which is assigned a position of zero. Two columns with the same number indicate that the two genes matched the same gene in that organism.

Genome browser links for gene clusters

The links below opens a genome browser BioCyc page for each cluster of genes in the target genome. These pages shows the central gene of the cluster in the target genome and its best homolog in the reference genomes, for the genomes that contain homologs for at least 75% of the genes in the group. Only one genome per phylogenetic cluster of organisms is shown, to keep the list smaller.

EG10004 EG10251 EG10329 EG10863 EG10886 EG11191 EG11312 (centered at EG10004)


ORG:REPLICON:CIRC?\GENE  IN REF LIST  EG11312   EG11191   EG10886   EG10863   EG10329   EG10251   EG10004   
329/623145/623412/623406/623410/623408/623419/623
AAEO224324:0:Tyes9761388-495-0416
AAUR290340:2:Tyes--1928761-0-
AAVE397945:0:Tyes2401275820662211223810
ABAC204669:0:Tyes---02267-2176
ABAU360910:0:Tyes18832645196114030872879
ABOR393595:0:Tyes8390241967
ABUT367737:0:Tyes--0----
ACAU438753:0:Tyes--037952591663408
ACEL351607:0:Tyes---3932821110
ACRY349163:8:Tyes968-10500626564
ADEH290397:0:Tyes---2279-01277
AEHR187272:0:Tyes1593015701375157817751776
AFER243159:0:Tyes2290-86400022922291
AFUL224325:0:Tyes---0---
AHYD196024:0:Tyes3043922712
ALAI441768:0:Tyes9---0801-
AMAR234826:0:Tyes----025-
AMAR329726:9:Tyes---2707235950600
AMET293826:0:Tyes1380--82-01873
ANAE240017:0:Tyes--0160---
AORE350688:0:Tyes1201--0--863
APER272557:0:Tyes---0---
APHA212042:0:Tyes--0-4919-
APLE416269:0:Tyes1959195619600198119571958
APLE434271:0:Tno1981197819820200419791980
ASAL382245:5:Tyes3984398739830398039863985
ASP1667:3:Tyes-025581206-256871
ASP232721:2:Tyes276902708330308409408
ASP62928:0:Tyes393-39232550395394
ASP62977:0:Tyes2860-41406137992859
ASP76114:2:Tyes23188214186633201
AVAR240292:3:Tyes--025401137-3684
AYEL322098:4:Tyes----0--
BABO262698:0:Tno------0
BABO262698:1:Tno--1750019101431-
BAMB339670:3:Tno1739233817400205017531752
BAMB398577:3:Tno1580216815810187715941593
BAMY326423:0:Tyes955-129901058-0
BANT260799:0:Tno639-066777111111
BANT261594:2:Tno660-068879311311
BANT568206:2:Tyes4114-114414142500103
BANT592021:2:Tno672-069880611311
BAPH198804:0:Tyes--0--455-
BAPH372461:0:Tyes--0--311-
BBAC264462:0:Tyes---10695870-
BBAC360095:0:Tyes704-0--1011185
BBRO257310:0:Tyes2380366624922079012881294
BCAN483179:0:Tno------0
BCAN483179:1:Tno--1818019791482-
BCEN331271:2:Tno1395198813960168914091408
BCEN331272:3:Tyes1501209615020179815151514
BCER226900:1:Tyes--0630718-11
BCER288681:0:Tno579-0617710-11
BCER315749:1:Tyes636--667733-0
BCER405917:1:Tyes622-0657785-12
BCER572264:1:Tno596-0625724-11
BCIC186490:0:Tyes--2-056
BCLA66692:0:Tyes306--3454015380
BFRA272559:1:Tyes--2155--02501
BFRA295405:0:Tno--2134--02695
BHAL272558:0:Tyes534--572656-0
BHEN283166:0:Tyes752-1433-20213150
BHER314723:0:Fyes------0
BJAP224911:0:Fyes--0517607603604
BLIC279010:0:Tyes1113--11641235-0
BLON206672:0:Tyes---0-1155-
BMAL243160:1:Tno11810501190925132131
BMAL320388:1:Tno250627652507721025212520
BMAL320389:1:Tyes13014501310953146145
BMEL224914:0:Tno------0
BMEL224914:1:Tno--017631935311-
BMEL359391:0:Tno------0
BMEL359391:1:Tno--1684018421375-
BOVI236:0:Tyes------0
BOVI236:1:Tyes--1577017251287-
BPAR257311:0:Tno985-8812073011111115
BPER257313:0:Tyes764014871083248319861224
BPET94624:0:Tyes27460291018503621-2403
BPSE272560:1:Tyes71907182379328705706
BPSE320372:1:Tno78707862784395772773
BPSE320373:1:Tno77507742666382760761
BPUM315750:0:Tyes958--10051062-0
BQUI283165:0:Tyes527-1097-1859900
BSP107806:2:Tyes--0--466-
BSP36773:2:Tyes1767238517680206317811780
BSP376:0:Tyes593-52096043
BSUB:0:Tyes1277-1213141386-0
BSUI204722:0:Tyes------0
BSUI204722:1:Tyes--1777019431451-
BSUI470137:0:Tno-----890
BSUI470137:1:Tno--16300---
BTHA271848:1:Tno62106201411320607608
BTHE226186:0:Tyes--0--2595457
BTHU281309:1:Tno585-0615712-11
BTHU412694:1:Tno541-0568655-11
BTRI382640:1:Tyes--1979--17940
BTUR314724:0:Fyes------0
BVIE269482:7:Tyes1649224716500196916631662
BWEI315730:4:Tyes607-0635726-11
CABO218497:0:Tyes--103--0-
CACE272562:1:Tyes0----180473
CAULO:0:Tyes--5130360936153614
CBEI290402:0:Tyes0----165647
CBLO203907:0:Tyes--0--1-
CBLO291272:0:Tno--0--21
CBOT36826:1:Tno1751----01257
CBOT441770:0:Tyes1732----01098
CBOT441771:0:Tno1592----01068
CBOT441772:1:Tno1698----01224
CBOT498213:1:Tno1776----01194
CBOT508765:1:Tyes113--0-310757
CBOT515621:2:Tyes1950----01442
CBOT536232:0:Tno1947----01381
CBUR227377:1:Tyes--07-1570
CBUR360115:1:Tno--09-2624
CBUR434922:2:Tno808-809801-8070
CCAV227941:1:Tyes--107--0-
CCHL340177:0:Tyes0-228--83101
CCON360104:2:Tyes--0----
CCUR360105:0:Tyes--0----
CDES477974:0:Tyes536--5804760669
CDIF272563:1:Tyes0--2190-12791467
CDIP257309:0:Tyes--01002-557476
CEFF196164:0:Fyes--014901054878796
CFEL264202:1:Tyes--3130-422-
CFET360106:0:Tyes--0----
CGLU196627:0:Tyes--0161411691005-
CHUT269798:0:Tyes--622--02945
CHYD246194:0:Tyes33--13130301151
CJAP155077:0:Tyes32533257324603236-3254
CJEI306537:0:Tyes--10820737614542
CJEJ192222:0:Tyes--0----
CJEJ195099:0:Tno--0----
CJEJ354242:2:Tyes--0----
CJEJ360109:0:Tyes--0----
CJEJ407148:0:Tno--0----
CKLU431943:1:Tyes0--2562-270493
CKOR374847:0:Tyes---0---
CMAQ397948:0:Tyes---0---
CMIC31964:2:Tyes--2209129308641221
CMIC443906:2:Tyes--16820-375499
CMUR243161:1:Tyes--1300-332-
CNOV386415:0:Tyes0----771554
CPEL335992:0:Tyes--0-200196197
CPER195102:1:Tyes404--552--0
CPER195103:0:Tno390--494--0
CPER289380:3:Tyes388--484--0
CPHY357809:0:Tyes-----0-
CPNE115711:1:Tyes--0--281-
CPNE115713:0:Tno--277--0-
CPNE138677:0:Tno--278--0-
CPNE182082:0:Tno--289--0-
CPRO264201:0:Fyes1529-410-6440-
CPSY167879:0:Tyes-69970100-70
CRUT413404:0:Tyes--612-0-427
CSAL290398:0:Tyes316224201312
CSP501479:6:Fyes-----01
CSP501479:7:Fyes163--057--
CSP501479:8:Fyes--0----
CSP78:1:Tyes0------
CSP78:2:Tyes--39980494549394940
CSUL444179:0:Tyes--0----
CTEP194439:0:Tyes399-1382--11910
CTET212717:0:Tyes795----07
CTRA471472:0:Tyes--1240-328-
CTRA471473:0:Tno--1240-328-
CVES412965:0:Tyes--555-0-400
CVIO243365:0:Tyes0-395800102221
DARO159087:0:Tyes2535025363247312125332534
DDES207559:0:Tyes----50714060
DETH243164:0:Tyes991--827924-0
DGEO319795:1:Tyes---16350-1862
DHAF138119:0:Tyes1869--1915011901412
DNOD246195:0:Tyes742-05921039744743
DOLE96561:0:Tyes5030---28801423
DPSY177439:2:Tyes0-10025802091951992
DRAD243230:3:Tyes---10770--
DRED349161:0:Tyes2062--2200110701211
DSHI398580:5:Tyes989-0884790393394
DSP216389:0:Tyes886--717816-0
DSP255470:0:Tno903--729830-0
DVUL882:1:Tyes----90501001
ECAN269484:0:Tyes--16--0-
ECAR218491:0:Tyes5260834
ECHA205920:0:Tyes----970-
ECOL199310:0:Tno3628054
ECOL316407:0:Tno304-612
ECOL331111:6:Tno3628054
ECOL362663:0:Tno3628054
ECOL364106:1:Tno4739065
ECOL405955:2:Tyes14-6032
ECOL409438:6:Tyes3628054
ECOL413997:0:Tno3628054
ECOL439855:4:Tno3628054
ECOL469008:0:Tno5260834
ECOL481805:0:Tno5260834
ECOL585034:0:Tno4729065
ECOL585035:0:Tno3628054
ECOL585055:0:Tno3628054
ECOL585056:2:Tno3628054
ECOL585057:0:Tno3629054
ECOL585397:0:Tno3628054
ECOL83334:0:Tno3628054
ECOLI:0:Tno3628054
ECOO157:0:Tno3628054
EFAE226185:3:Tyes1932-21152340--
EFER585054:1:Tyes3629054
ELIT314225:0:Tyes313-13520918912-
ERUM254945:0:Tyes--113-095-
ERUM302409:0:Tno--109-092-
ESP42895:1:Tyes5260834
FALN326424:0:Tyes-2260-042055593646
FJOH376686:0:Tyes--3945--02429
FMAG334413:1:Tyes0----436332
FNOD381764:0:Tyes0-----1316
FNUC190304:0:Tyes---0-1306989
FPHI484022:1:Tyes--26422203661719
FRANT:0:Tno--11965043450761
FSP106370:0:Tyes---027194482315
FSP1855:0:Tyes---443203978561
FSUC59374:0:Tyes--13590--121
FTUL351581:0:Tno--26411311580512
FTUL393011:0:Tno--24610510480486
FTUL393115:0:Tyes--11745003410755
FTUL401614:0:Tyes--981503660886
FTUL418136:0:Tno--084210161195733
FTUL458234:0:Tno--26111510910512
GBET391165:0:Tyes1629-5890134131132
GFOR411154:0:Tyes--1594--26120
GKAU235909:1:Tyes1469--15171579-0
GMET269799:1:Tyes-2267-68203921473
GOXY290633:5:Tyes--01168238023772378
GSUL243231:0:Tyes0562-14016081202734
GTHE420246:1:Tyes1495--15411600-0
GURA351605:0:Tyes22161496-356175801022
GVIO251221:0:Tyes2024---19660-
HACI382638:1:Tyes-----0-
HARS204773:0:Tyes1538203115391210194001
HAUR316274:2:Tyes113---0-3655
HBUT415426:0:Tyes---0---
HCHE349521:0:Tyes434533143355770436435
HDUC233412:0:Tyes3803833790361382381
HHAL349124:0:Tyes1335-13480134513321333
HHEP235279:0:Tyes--1169--0-
HINF281310:0:Tyes6906936890683692691
HINF374930:0:Tyes9469439470953944945
HINF71421:0:Tno6696726680662671670
HMOD498761:0:Tyes2424--0141821651798
HNEP81032:0:Tyes--22948701
HPY:0:Tno-----0-
HPYL357544:1:Tyes-----0-
HPYL85963:0:Tno-----0-
HSOM205914:1:Tyes3041158612
HSOM228400:0:Tno304327612
IHOS453591:0:Tyes---0-382-
ILOI283942:0:Tyes3042241812
JSP290400:1:Tyes--325504053709708
JSP375286:0:Tyes175224341753514232601
KPNE272620:2:Tyes3629054
KRAD266940:2:Fyes--1288233717803130
LACI272621:0:Tyes----575-0
LBIF355278:2:Tyes-14080--487-
LBIF456481:2:Tno-14510--504-
LBOR355276:1:Tyes--0--725-
LBOR355277:1:Tno--0--340-
LBRE387344:2:Tyes----73-0
LCAS321967:1:Tyes0---446-365
LCHO395495:0:Tyes1560212166297521292130
LDEL321956:0:Tyes----0--
LDEL390333:0:Tyes----0--
LGAS324831:0:Tyes----140-0
LHEL405566:0:Tyes----452-0
LINN272626:1:Tno383901-0398-764
LINT189518:1:Tyes--1051--0-
LINT267671:1:Tno--0--783-
LINT363253:3:Tyes-----0-
LJOH257314:0:Tyes----705-0
LLAC272622:5:Tyes854---2070-
LLAC272623:0:Tyes831---1770-
LMES203120:1:Tyes----0-673
LMON169963:0:Tno312--0327-616
LMON265669:0:Tyes321739-0338-600
LPLA220668:0:Tyes----0-92
LPNE272624:0:Tno2006-015307820042005
LPNE297245:1:Fno1887-014657918851886
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