CANDIDATE ID: 372

CANDIDATE ID: 372

NUMBER OF GENES: 6
AVERAGE SCORE:    9.9915293e-1 (range=[0.0,1.0])
AVERAGE MINIMUM BLAST P-VAL:    1.0000000e+0

Gene List
List of organisms containing most genes from the group
    Phylogenetic tree highlighting these organisms (opens new page)
List of organisms containing very few or no genes from the group
List of organisms enriched for group
List of organisms depleted for group
Phylogenetic profile similarity with known pathways
Pairwise genome context scores
Pairwise Blast scores
Pathway or protein complex matches in target organism
Genome context matrix
    Genes and their orthologs in genome browser BioCyc pages



GENE LIST:

- G7428 (casC) (b2758)
   Products of gene:
     - G7428-MONOMER (Cascade subunit C)
     - CPLX0-7725 (CRISPR-associated complex for antiviral defense)
       Reactions:
        pre-crRNA  ->  crRNA

- G7427 (casD) (b2757)
   Products of gene:
     - G7427-MONOMER (Cascade subunit D)
     - CPLX0-7725 (CRISPR-associated complex for antiviral defense)
       Reactions:
        pre-crRNA  ->  crRNA

- G7426 (casE) (b2756)
   Products of gene:
     - G7426-MONOMER (crRNA endonuclease)
     - CPLX0-7725 (CRISPR-associated complex for antiviral defense)
       Reactions:
        pre-crRNA  ->  crRNA

- G7425 (cas1) (b2755)
   Products of gene:
     - G7425-MONOMER (predicted integrase)

- EG12845 (cas2) (b2754)
   Products of gene:
     - EG12845-MONOMER (predicted endoribonuclease)

- EG12634 (cas3) (b2761)
   Products of gene:
     - EG12634-MONOMER (predicted fused HD nuclease and DEAD box helicase)



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ORGANISMS CONTAINING AT LEAST 5 GENES FROM THE GROUP:

Total number of orgs: 54
Effective number of orgs (counting one per cluster within 468 clusters): 39

Organism list
Homologs in each organism in the list
Features enriched in organism list


Follow (ncbi) link, when present, to find the set of organism features for each organism
Org ID  Org Name  # genes in group found in org  
UMET351160 ncbi uncultured methanogenic archaeon RC-I6
TTHE300852 ncbi Thermus thermophilus HB85
STYP99287 ncbi Salmonella enterica enterica serovar Typhimurium str. LT26
STHE292459 ncbi Symbiobacterium thermophilum IAM 148635
SSP321327 ncbi Synechococcus sp. JA-3-3Ab5
SFUM335543 ncbi Syntrophobacter fumaroxidans MPOB5
SENT454169 ncbi Salmonella enterica enterica serovar Heidelberg str. SL4766
SENT321314 ncbi Salmonella enterica enterica serovar Choleraesuis str. SC-B675
SENT295319 ncbi Salmonella enterica enterica serovar Paratyphi A str. ATCC 91505
SENT220341 ncbi Salmonella enterica enterica serovar Typhi str. CT186
SENT209261 ncbi Salmonella enterica enterica serovar Typhi str. Ty26
SBOY300268 ncbi Shigella boydii Sb2276
SAVE227882 ncbi Streptomyces avermitilis MA-46805
SARE391037 ncbi Salinispora arenicola CNS-2056
RSP357808 ncbi Roseiflexus sp. RS-15
RRUB269796 ncbi Rhodospirillum rubrum ATCC 111706
PPRO298386 ncbi Photobacterium profundum SS96
PMEN399739 ncbi Pseudomonas mendocina ymp6
PING357804 ncbi Psychromonas ingrahamii 376
PCAR338963 ncbi Pelobacter carbinolicus DSM 23806
NFAR247156 ncbi Nocardia farcinica IFM 101525
MSP400668 ncbi Marinomonas sp. MWYL15
MHUN323259 ncbi Methanospirillum hungatei JF-15
MCAP243233 ncbi Methylococcus capsulatus Bath5
MBUR259564 ncbi Methanococcoides burtonii DSM 62426
LDEL390333 ncbi Lactobacillus delbrueckii bulgaricus ATCC 118425
LDEL321956 ncbi Lactobacillus delbrueckii bulgaricus ATCC BAA-3655
LCAS321967 ncbi Lactobacillus casei ATCC 3346
LBOR355277 ncbi Leptospira borgpetersenii serovar Hardjo-bovis JB1976
LBOR355276 ncbi Leptospira borgpetersenii serovar Hardjo-bovis L5506
GURA351605 ncbi Geobacter uraniireducens Rf46
GSUL243231 ncbi Geobacter sulfurreducens PCA6
GBET391165 ncbi Granulibacter bethesdensis CGDNIH15
FSP106370 ncbi Frankia sp. CcI35
FALN326424 ncbi Frankia alni ACN14a6
EFER585054 ncbi Escherichia fergusonii ATCC 354696
ECOO157 ncbi Escherichia coli O157:H7 EDL9336
ECOL83334 Escherichia coli O157:H76
ECOL585056 ncbi Escherichia coli UMN0265
ECOL585055 ncbi Escherichia coli 559896
ECOL585034 ncbi Escherichia coli IAI16
ECOL481805 ncbi Escherichia coli ATCC 87396
ECOL439855 ncbi Escherichia coli SMS-3-56
ECOL409438 ncbi Escherichia coli SE116
ECOL331111 ncbi Escherichia coli E24377A6
ECOL316407 ncbi Escherichia coli K-12 substr. W31106
DSP255470 ncbi Dehalococcoides sp. CBDB15
DSHI398580 ncbi Dinoroseobacter shibae DFL 125
DOLE96561 ncbi Desulfococcus oleovorans Hxd36
DGEO319795 ncbi Deinococcus geothermalis DSM 113005
DDES207559 ncbi Desulfovibrio desulfuricans desulfuricans G206
CSAL290398 ncbi Chromohalobacter salexigens DSM 30436
AEHR187272 ncbi Alkalilimnicola ehrlichii MLHE-15
ACRY349163 ncbi Acidiphilium cryptum JF-55


Names of the homologs of the genes in the group in each of these orgs
  G7428   G7427   G7426   G7425   EG12845   EG12634   
UMET351160 RCIX1150RCIX1151RCIX1152RCIX1153RCIX1154RCIX1147
TTHE300852 TTHB190TTHB192TTHB193TTHB194TTHB187
STYP99287 STM2941STM2940STM2939STM2938STM2937STM2944
STHE292459 STH667STH668STH669STH663STH664
SSP321327 CYA_0732CYA_0730CYA_0729CYA_0728CYA_0735
SFUM335543 SFUM_2827SFUM_2829SFUM_2830SFUM_2831SFUM_2824
SENT454169 SEHA_C3135SEHA_C3134SEHA_C3133SEHA_C3132SEHA_C3131SEHA_C3138
SENT321314 SCH_2873SCH_2872SCH_2871SCH_2870SCH_2869
SENT295319 SPA2797SPA2796SPA2795SPA2794SPA2793
SENT220341 STY3068STY3067STY3066STY3065STY3064STY3071
SENT209261 T2842T2841T2840T2839T2838T2845
SBOY300268 SBO_2762SBO_2763SBO_2764SBO_2765SBO_2766SBO_2759
SAVE227882 SAV7540SAV7539SAV7538SAV7537SAV7543
SARE391037 SARE_1974SARE_1975SARE_1976SARE_2578SARE_1978SARE_2572
RSP357808 ROSERS_0648ROSERS_0647ROSERS_0646ROSERS_0645ROSERS_0651
RRUB269796 RRU_A0344RRU_A0171RRU_A0170RRU_A0169RRU_A0168RRU_A0175
PPRO298386 PBPRC0037PBPRC0036PBPRC0039PBPRC0034PBPRC0033PBPRC0040
PMEN399739 PMEN_3758PMEN_3757PMEN_3756PMEN_3755PMEN_3754PMEN_3763
PING357804 PING_1589PING_1590PING_1587PING_1592PING_1593PING_1586
PCAR338963 PCAR_0959PCAR_0960PCAR_0961PCAR_0964PCAR_0965PCAR_0956
NFAR247156 NFA44250NFA44240NFA44230NFA44220NFA44280
MSP400668 MMWYL1_3545MMWYL1_3544MMWYL1_3541MMWYL1_3540MMWYL1_3548
MHUN323259 MHUN_1378MHUN_1377MHUN_1376MHUN_1375MHUN_1374
MCAP243233 MCA_0933MCA_0932MCA_0930MCA_0929.1MCA_0936
MBUR259564 MBUR_0596MBUR_0597MBUR_0598MBUR_0599MBUR_0600MBUR_0593
LDEL390333 LDB0871LDB0872LDB0874LDB0875LDB0868
LDEL321956 LBUL_0796LBUL_0797LBUL_0799LBUL_0800LBUL_0793
LCAS321967 LSEI_0352LSEI_0353LSEI_0354LSEI_0355LSEI_0356LSEI_0349
LBOR355277 LBJ_2451LBJ_2452LBJ_2453LBJ_2455LBJ_2456LBJ_2448
LBOR355276 LBL_0661LBL_0660LBL_0659LBL_0657LBL_0656LBL_0664
GURA351605 GURA_0830GURA_0831GURA_0829GURA_0835GURA_0837GURA_0826
GSUL243231 GSU_1387GSU_1388GSU_1389GSU_1392GSU_1393GSU_1384
GBET391165 GBCGDNIH1_1378GBCGDNIH1_1696GBCGDNIH1_1375GBCGDNIH1_1374GBCGDNIH1_1381
FSP106370 FRANCCI3_0020FRANCCI3_0021FRANCCI3_0023FRANCCI3_0024FRANCCI3_0017
FALN326424 FRAAL0455FRAAL0456FRAAL0457FRAAL0458FRAAL0459FRAAL0452
EFER585054 EFER_0305EFER_0306EFER_0307EFER_0308EFER_0309EFER_0302
ECOO157 Z4067Z4066Z4065Z4064YGBFYGCB
ECOL83334 ECS3612ECS3611ECS3610ECS3609ECS3608ECS3615
ECOL585056 ECUMN_3085ECUMN_3084ECUMN_3083ECUMN_3080ECUMN_3088
ECOL585055 EC55989_3031EC55989_3030EC55989_3029EC55989_3028EC55989_3027EC55989_3034
ECOL585034 ECIAI1_2861ECIAI1_2860ECIAI1_2859ECIAI1_2858ECIAI1_2857ECIAI1_2864
ECOL481805 ECOLC_0954ECOLC_0955ECOLC_0956ECOLC_0957ECOLC_0958ECOLC_0951
ECOL439855 ECSMS35_2886ECSMS35_2885ECSMS35_2884ECSMS35_2883ECSMS35_2882ECSMS35_2889
ECOL409438 ECSE_3013ECSE_3012ECSE_3011ECSE_3010ECSE_3009ECSE_3016
ECOL331111 ECE24377A_3060ECE24377A_3059ECE24377A_3058ECE24377A_3057ECE24377A_3056ECE24377A_3063
ECOL316407 ECK2753:JW2728:B2758ECK2752:JW5844:B2757ECK2751:JW2726:B2756ECK2750:JW2725:B2755ECK2749:JW5438:B2754ECK2756:JW2731:B2761
DSP255470 CBDBA1520CBDBB36CBDBA1519CBDBA1518CBDBA1522
DSHI398580 DSHI_3217DSHI_3218DSHI_3220DSHI_3221DSHI_3214
DOLE96561 DOLE_2986DOLE_2987DOLE_2988DOLE_2989DOLE_2990DOLE_2983
DGEO319795 DGEO_2632DGEO_2634DGEO_2636DGEO_2637DGEO_2629
DDES207559 DDE_0862DDE_0861DDE_0860DDE_0858DDE_0857DDE_0865
CSAL290398 CSAL_0229CSAL_0230CSAL_0231CSAL_0232CSAL_0233CSAL_0224
AEHR187272 MLG_0952MLG_0951MLG_0949MLG_0948MLG_0955
ACRY349163 ACRY_3317ACRY_1810ACRY_3319ACRY_1808ACRY_3314


Organism features enriched in list (features available for 53 out of the 54 orgs in the list)
Feature    Pvalue       Num occurrences in list  Total num occurrences  
Arrangment:Filaments 0.0008484510
Arrangment:Singles 0.008067018286
Disease:Typhoid_fever 0.008122522
GC_Content_Range4:40-60 0.000013635224
GC_Content_Range7:50-60 5.811e-623107
Genome_Size_Range5:0-2 0.00004893155
Genome_Size_Range5:4-6 0.001021327184
Genome_Size_Range9:1-2 0.00070133128
Genome_Size_Range9:3-4 0.00341251477



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ORGANISMS CONTAINING AT MOST 1 GENES FROM THE GROUP:

Total number of orgs: 558
Effective number of orgs (counting one per cluster within 468 clusters): 422

Organism list
Homologs in each organism in the list
Features enriched in organism list


Follow (ncbi) link, when present, to find the set of organism features for each organism
Org ID  Org Name  # genes in group found in org  
ZMOB264203 ncbi Zymomonas mobilis mobilis ZM40
YPSE349747 ncbi Yersinia pseudotuberculosis IP 317581
YPSE273123 ncbi Yersinia pseudotuberculosis IP 329531
YPES386656 ncbi Yersinia pestis Pestoides F1
YPES377628 ncbi Yersinia pestis Nepal5161
YPES360102 ncbi Yersinia pestis Antiqua1
YPES349746 ncbi Yersinia pestis Angola1
YPES214092 ncbi Yersinia pestis CO921
YPES187410 ncbi Yersinia pestis KIM 101
YENT393305 ncbi Yersinia enterocolitica enterocolitica 80810
XORY360094 ncbi Xanthomonas oryzae pv. oryzae PXO99A0
XORY342109 ncbi Xanthomonas oryzae pv. oryzae MAFF 3110180
XORY291331 ncbi Xanthomonas oryzae pv. oryzae KACC103310
XFAS405440 ncbi Xylella fastidiosa M120
XFAS183190 ncbi Xylella fastidiosa Temecula10
XFAS160492 ncbi Xylella fastidiosa 9a5c0
XCAM487884 Xanthomonas campestris pv. paulliniae0
XCAM316273 ncbi Xanthomonas campestris pv. vesicatoria str. 85-101
XCAM314565 ncbi Xanthomonas campestris pv. campestris str. 80040
XCAM190485 ncbi Xanthomonas campestris pv. campestris str. ATCC 339130
XAXO190486 ncbi Xanthomonas axonopodis pv. citri str. 3060
XAUT78245 ncbi Xanthobacter autotrophicus Py20
WSUC273121 ncbi Wolinella succinogenes DSM 17400
WPIP955 Wolbachia pipientis0
WPIP80849 Wolbachia endosymbiont of Brugia malayi0
VVUL216895 ncbi Vibrio vulnificus CMCP60
VVUL196600 ncbi Vibrio vulnificus YJ0160
VPAR223926 ncbi Vibrio parahaemolyticus RIMD 22106330
VFIS312309 ncbi Vibrio fischeri ES1140
VEIS391735 ncbi Verminephrobacter eiseniae EF01-21
VCHO ncbi Vibrio cholerae O1 biovar El Tor str. N169610
UURE95667 Ureaplasma urealyticum serovar 130
UURE95664 Ureaplasma urealyticum serovar 100
UPAR505682 ncbi Ureaplasma parvum serovar 3 str. ATCC 278150
TWHI218496 ncbi Tropheryma whipplei TW08/270
TWHI203267 ncbi Tropheryma whipplei Twist0
TVOL273116 ncbi Thermoplasma volcanium GSS10
TTUR377629 ncbi Teredinibacter turnerae T79010
TTHE262724 ncbi Thermus thermophilus HB270
TTEN273068 ncbi Thermoanaerobacter tengcongensis MB41
TSP28240 Thermotoga sp.0
TSP1755 Thermoanaerobacter sp.1
TROS309801 ncbi Thermomicrobium roseum DSM 51591
TPSE340099 ncbi Thermoanaerobacter pseudethanolicus ATCC 332231
TPET390874 ncbi Thermotoga petrophila RKU-11
TPEN368408 ncbi Thermofilum pendens Hrk 51
TPAL243276 ncbi Treponema pallidum pallidum Nichols0
TMAR243274 ncbi Thermotoga maritima MSB80
TLET416591 ncbi Thermotoga lettingae TMO0
TKOD69014 ncbi Thermococcus kodakarensis KOD11
TERY203124 ncbi Trichodesmium erythraeum IMS1010
TELO197221 ncbi Thermosynechococcus elongatus BP-10
TDEN326298 ncbi Sulfurimonas denitrificans DSM 12510
TDEN292415 ncbi Thiobacillus denitrificans ATCC 252590
TDEN243275 ncbi Treponema denticola ATCC 354050
TCRU317025 ncbi Thiomicrospira crunogena XCL-20
TACI273075 ncbi Thermoplasma acidophilum DSM 17280
SWOL335541 ncbi Syntrophomonas wolfei wolfei Goettingen0
STRO369723 ncbi Salinispora tropica CNB-4401
STOK273063 ncbi Sulfolobus tokodaii 71
STHE322159 ncbi Streptococcus thermophilus LMD-90
STHE299768 ncbi Streptococcus thermophilus CNRZ10660
STHE264199 ncbi Streptococcus thermophilus LMG 183110
SSUI391296 ncbi Streptococcus suis 98HAH330
SSUI391295 ncbi Streptococcus suis 05ZYH330
SSP94122 ncbi Shewanella sp. ANA-30
SSP84588 ncbi Synechococcus sp. WH 81020
SSP64471 ncbi Synechococcus sp. CC93110
SSP644076 Silicibacter sp. TrichCH4B0
SSP387093 ncbi Sulfurovum sp. NBC37-10
SSP321332 ncbi Synechococcus sp. JA-2-3Ba(2-13)0
SSP292414 ncbi Ruegeria sp. TM10400
SSP1148 ncbi Synechocystis sp. PCC 68030
SSP1131 Synechococcus sp. CC96050
SSOL273057 ncbi Sulfolobus solfataricus P21
SSED425104 ncbi Shewanella sediminis HAW-EB30
SSAP342451 ncbi Staphylococcus saprophyticus saprophyticus ATCC 153050
SRUB309807 ncbi Salinibacter ruber DSM 138550
SPYO370554 ncbi Streptococcus pyogenes MGAS107500
SPYO370553 ncbi Streptococcus pyogenes MGAS20960
SPYO370552 ncbi Streptococcus pyogenes MGAS102700
SPYO370551 ncbi Streptococcus pyogenes MGAS94290
SPYO319701 ncbi Streptococcus pyogenes MGAS61800
SPYO293653 ncbi Streptococcus pyogenes MGAS50050
SPYO286636 ncbi Streptococcus pyogenes MGAS103940
SPYO198466 ncbi Streptococcus pyogenes MGAS3150
SPYO193567 ncbi Streptococcus pyogenes SSI-10
SPYO186103 ncbi Streptococcus pyogenes MGAS82320
SPYO160490 ncbi Streptococcus pyogenes M1 GAS0
SPRO399741 ncbi Serratia proteamaculans 5680
SPNE488221 ncbi Streptococcus pneumoniae 705850
SPNE487214 ncbi Streptococcus pneumoniae Hungary19A-60
SPNE487213 ncbi Streptococcus pneumoniae Taiwan19F-140
SPNE171101 ncbi Streptococcus pneumoniae R60
SPNE170187 ncbi Streptococcus pneumoniae G540
SPNE1313 Streptococcus pneumoniae0
SPEA398579 ncbi Shewanella pealeana ATCC 7003450
SONE211586 ncbi Shewanella oneidensis MR-10
SMUT210007 ncbi Streptococcus mutans UA1590
SMEL266834 ncbi Sinorhizobium meliloti 10210
SMED366394 ncbi Sinorhizobium medicae WSM4190
SMAR399550 ncbi Staphylothermus marinus F11
SLOI323850 ncbi Shewanella loihica PV-40
SLAC55218 Ruegeria lacuscaerulensis0
SHIGELLA ncbi Shigella flexneri 2a str. 2457T0
SHAL458817 ncbi Shewanella halifaxensis HAW-EB40
SHAE279808 ncbi Staphylococcus haemolyticus JCSC14350
SGOR29390 Streptococcus gordonii Challis0
SGLO343509 ncbi Sodalis glossinidius morsitans0
SFLE373384 ncbi Shigella flexneri 5 str. 84011
SFLE198214 ncbi Shigella flexneri 2a str. 3011
SERY405948 ncbi Saccharopolyspora erythraea NRRL 23380
SEPI176280 ncbi Staphylococcus epidermidis ATCC 122280
SEPI176279 ncbi Staphylococcus epidermidis RP62A0
SELO269084 ncbi Synechococcus elongatus PCC 63010
SDEN318161 ncbi Shewanella denitrificans OS2170
SDEG203122 ncbi Saccharophagus degradans 2-400
SCO ncbi Streptomyces coelicolor A3(2)0
SBAL402882 ncbi Shewanella baltica OS1850
SBAL399599 ncbi Shewanella baltica OS1950
SAUR93062 ncbi Staphylococcus aureus aureus COL0
SAUR93061 ncbi Staphylococcus aureus aureus NCTC 83250
SAUR426430 ncbi Staphylococcus aureus aureus Newman0
SAUR418127 ncbi Staphylococcus aureus aureus Mu30
SAUR367830 Staphylococcus aureus aureus USA3000
SAUR359787 ncbi Staphylococcus aureus aureus JH10
SAUR359786 ncbi Staphylococcus aureus aureus JH90
SAUR282459 ncbi Staphylococcus aureus aureus MSSA4760
SAUR282458 ncbi Staphylococcus aureus aureus MRSA2520
SAUR273036 ncbi Staphylococcus aureus RF1220
SAUR196620 ncbi Staphylococcus aureus aureus MW20
SAUR158879 ncbi Staphylococcus aureus aureus N3150
SAUR158878 ncbi Staphylococcus aureus aureus Mu500
SALA317655 ncbi Sphingopyxis alaskensis RB22560
SAGA211110 ncbi Streptococcus agalactiae NEM3160
SAGA208435 ncbi Streptococcus agalactiae 2603V/R0
SAGA205921 ncbi Streptococcus agalactiae A9090
SACI56780 ncbi Syntrophus aciditrophicus SB0
SACI330779 ncbi Sulfolobus acidocaldarius DSM 6390
RXYL266117 ncbi Rubrobacter xylanophilus DSM 99411
RTYP257363 ncbi Rickettsia typhi Wilmington0
RSPH349102 ncbi Rhodobacter sphaeroides ATCC 170251
RSPH349101 ncbi Rhodobacter sphaeroides ATCC 170290
RSPH272943 ncbi Rhodobacter sphaeroides 2.4.11
RSP101510 ncbi Rhodococcus jostii RHA10
RSOL267608 ncbi Ralstonia solanacearum GMI10000
RSAL288705 ncbi Renibacterium salmoninarum ATCC 332090
RRIC452659 ncbi Rickettsia rickettsii Iowa0
RRIC392021 ncbi Rickettsia rickettsii Sheila Smith0
RPRO272947 ncbi Rickettsia prowazekii Madrid E0
RPOM246200 ncbi Ruegeria pomeroyi DSS-30
RPAL316058 ncbi Rhodopseudomonas palustris HaA20
RPAL316057 ncbi Rhodopseudomonas palustris BisB50
RPAL316056 ncbi Rhodopseudomonas palustris BisB180
RPAL316055 ncbi Rhodopseudomonas palustris BisA530
RPAL258594 ncbi Rhodopseudomonas palustris CGA0090
RMET266264 ncbi Ralstonia metallidurans CH340
RMAS416276 ncbi Rickettsia massiliae MTU50
RLEG216596 ncbi Rhizobium leguminosarum bv. viciae 38410
RFER338969 ncbi Rhodoferax ferrireducens T1181
RFEL315456 ncbi Rickettsia felis URRWXCal20
REUT381666 ncbi Ralstonia eutropha H160
REUT264198 ncbi Ralstonia eutropha JMP1340
RETL347834 ncbi Rhizobium etli CFN 420
RDEN375451 ncbi Roseobacter denitrificans OCh 1140
RCON272944 ncbi Rickettsia conorii Malish 70
RCAS383372 ncbi Roseiflexus castenholzii DSM 139411
RCAN293613 ncbi Rickettsia canadensis McKiel0
RBEL391896 ncbi Rickettsia bellii OSU 85-3890
RBEL336407 ncbi Rickettsia bellii RML369-C0
RALB246199 Ruminococcus albus 80
RAKA293614 ncbi Rickettsia akari Hartford0
PTOR263820 ncbi Picrophilus torridus DSM 97900
PTHE370438 ncbi Pelotomaculum thermopropionicum SI0
PSYR223283 ncbi Pseudomonas syringae pv. tomato str. DC30000
PSYR205918 ncbi Pseudomonas syringae pv. syringae B728a0
PSTU379731 ncbi Pseudomonas stutzeri A15010
PSP56811 Psychrobacter sp.0
PSP312153 ncbi Polynucleobacter necessarius asymbioticus QLW-P1DMWA-10
PSP296591 ncbi Polaromonas sp. JS6660
PSP117 Pirellula sp.0
PRUM264731 ncbi Prevotella ruminicola 230
PPUT76869 ncbi Pseudomonas putida GB-10
PPUT351746 ncbi Pseudomonas putida F10
PPUT160488 ncbi Pseudomonas putida KT24400
PPEN278197 ncbi Pediococcus pentosaceus ATCC 257450
PNAP365044 ncbi Polaromonas naphthalenivorans CJ20
PMUL272843 ncbi Pasteurella multocida multocida Pm701
PMOB403833 ncbi Petrotoga mobilis SJ950
PMAR93060 ncbi Prochlorococcus marinus MIT 92150
PMAR74547 ncbi Prochlorococcus marinus MIT 93130
PMAR74546 ncbi Prochlorococcus marinus MIT 93120
PMAR59920 ncbi Prochlorococcus marinus NATL2A0
PMAR167555 ncbi Prochlorococcus marinus NATL1A0
PMAR167546 ncbi Prochlorococcus marinus MIT 93010
PMAR167542 ncbi Prochlorococcus marinus MIT 95150
PMAR167540 Prochlorococcus marinus pastoris MED4ax0
PMAR167539 ncbi Prochlorococcus marinus marinus CCMP13750
PMAR146891 ncbi Prochlorococcus marinus AS96010
PLUT319225 ncbi Chlorobium luteolum DSM 2730
PISL384616 ncbi Pyrobaculum islandicum DSM 41840
PINT246198 Prevotella intermedia 170
PHOR70601 ncbi Pyrococcus horikoshii OT31
PHAL326442 ncbi Pseudoalteromonas haloplanktis TAC1250
PGIN242619 ncbi Porphyromonas gingivalis W831
PFUR186497 ncbi Pyrococcus furiosus DSM 36381
PFLU220664 ncbi Pseudomonas fluorescens Pf-50
PFLU216595 ncbi Pseudomonas fluorescens SBW250
PFLU205922 ncbi Pseudomonas fluorescens Pf0-10
PENT384676 ncbi Pseudomonas entomophila L480
PDIS435591 ncbi Parabacteroides distasonis ATCC 85030
PCRY335284 ncbi Psychrobacter cryohalolentis K50
PATL342610 ncbi Pseudoalteromonas atlantica T6c0
PAST100379 Onion yellows phytoplasma0
PARS340102 ncbi Pyrobaculum arsenaticum DSM 135140
PARC259536 ncbi Psychrobacter arcticus 273-40
PAER208964 ncbi Pseudomonas aeruginosa PAO10
PAER208963 ncbi Pseudomonas aeruginosa UCBPP-PA141
PAER178306 ncbi Pyrobaculum aerophilum IM20
PACN267747 ncbi Propionibacterium acnes KPA1712020
PABY272844 ncbi Pyrococcus abyssi GE51
OTSU357244 ncbi Orientia tsutsugamushi Boryong0
OIHE221109 ncbi Oceanobacillus iheyensis HTE8310
OCAR504832 ncbi Oligotropha carboxidovorans OM50
OANT439375 ncbi Ochrobactrum anthropi ATCC 491880
NWIN323098 ncbi Nitrobacter winogradskyi Nb-2550
NSP387092 ncbi Nitratiruptor sp. SB155-20
NSP35761 Nocardioides sp.0
NSP103690 ncbi Nostoc sp. PCC 71200
NSEN222891 ncbi Neorickettsia sennetsu Miyayama0
NPHA348780 ncbi Natronomonas pharaonis DSM 21600
NOCE323261 ncbi Nitrosococcus oceani ATCC 197071
NMUL323848 ncbi Nitrosospira multiformis ATCC 251960
NMEN374833 ncbi Neisseria meningitidis 0534420
NMEN272831 ncbi Neisseria meningitidis FAM180
NMEN122587 ncbi Neisseria meningitidis Z24910
NMEN122586 ncbi Neisseria meningitidis MC580
NHAM323097 ncbi Nitrobacter hamburgensis X140
NGON242231 ncbi Neisseria gonorrhoeae FA 10900
NEUT335283 ncbi Nitrosomonas eutropha C910
NEUR228410 ncbi Nitrosomonas europaea ATCC 197180
NARO279238 ncbi Novosphingobium aromaticivorans DSM 124440
MXAN246197 ncbi Myxococcus xanthus DK 16221
MVAN350058 ncbi Mycobacterium vanbaalenii PYR-10
MTUB419947 ncbi Mycobacterium tuberculosis H37Ra0
MTUB336982 ncbi Mycobacterium tuberculosis F110
MTHE349307 ncbi Methanosaeta thermophila PT1
MTHE264732 ncbi Moorella thermoacetica ATCC 390731
MTHE187420 ncbi Methanothermobacter thermautotrophicus Delta H1
MTBRV ncbi Mycobacterium tuberculosis H37Rv0
MTBCDC ncbi Mycobacterium tuberculosis CDC15510
MSYN262723 ncbi Mycoplasma synoviae 530
MSUC221988 ncbi Mannheimia succiniciproducens MBEL55E0
MSTA339860 ncbi Methanosphaera stadtmanae DSM 30911
MSP409 Methylobacterium sp.0
MSP266779 ncbi Chelativorans sp. BNC10
MSP189918 ncbi Mycobacterium sp. KMS0
MSP164757 ncbi Mycobacterium sp. JLS0
MSP164756 ncbi Mycobacterium sp. MCS0
MSME246196 ncbi Mycobacterium smegmatis MC2 1550
MSED399549 ncbi Metallosphaera sedula DSM 53480
MPUL272635 ncbi Mycoplasma pulmonis UAB CTIP0
MPNE272634 ncbi Mycoplasma pneumoniae M1290
MPET420662 ncbi Methylibium petroleiphilum PM10
MPEN272633 ncbi Mycoplasma penetrans HF-20
MMYC272632 ncbi Mycoplasma mycoides mycoides SC str. PG10
MMOB267748 ncbi Mycoplasma mobile 163K0
MMAZ192952 ncbi Methanosarcina mazei Go10
MMAR444158 ncbi Methanococcus maripaludis C60
MMAR426368 ncbi Methanococcus maripaludis C70
MMAR402880 ncbi Methanococcus maripaludis C50
MMAR394221 ncbi Maricaulis maris MCS100
MMAR368407 ncbi Methanoculleus marisnigri JR10
MMAR267377 ncbi Methanococcus maripaludis S20
MMAG342108 ncbi Magnetospirillum magneticum AMB-10
MLOT266835 ncbi Mesorhizobium loti MAFF3030990
MLEP272631 ncbi Mycobacterium leprae TN0
MLAB410358 ncbi Methanocorpusculum labreanum Z0
MKAN190192 ncbi Methanopyrus kandleri AV190
MJAN243232 ncbi Methanocaldococcus jannaschii DSM 26611
MHYO295358 ncbi Mycoplasma hyopneumoniae 2320
MHYO262722 ncbi Mycoplasma hyopneumoniae 74480
MHYO262719 ncbi Mycoplasma hyopneumoniae J0
MGIL350054 ncbi Mycobacterium gilvum PYR-GCK0
MGEN243273 ncbi Mycoplasma genitalium G370
MFLO265311 ncbi Mesoplasma florum L10
MFLA265072 ncbi Methylobacillus flagellatus KT0
MEXT419610 ncbi Methylobacterium extorquens PA10
MCAP340047 ncbi Mycoplasma capricolum capricolum ATCC 273430
MBOV410289 ncbi Mycobacterium bovis BCG str. Pasteur 1173P20
MBOV233413 ncbi Mycobacterium bovis AF2122/970
MBAR269797 ncbi Methanosarcina barkeri Fusaro1
MAVI243243 ncbi Mycobacterium avium 1040
MART243272 ncbi Mycoplasma arthritidis 158L3-10
MAQU351348 ncbi Marinobacter aquaeolei VT80
MAER449447 ncbi Microcystis aeruginosa NIES-8430
MAEO419665 ncbi Methanococcus aeolicus Nankai-31
MACE188937 ncbi Methanosarcina acetivorans C2A1
MABS561007 ncbi Mycobacterium abscessus ATCC 199770
LXYL281090 ncbi Leifsonia xyli xyli CTCB070
LWEL386043 ncbi Listeria welshimeri serovar 6b str. SLCC53340
LSPH444177 ncbi Lysinibacillus sphaericus C3-410
LSAK314315 ncbi Lactobacillus sakei sakei 23K0
LREU557436 ncbi Lactobacillus reuteri DSM 200160
LPNE400673 ncbi Legionella pneumophila Corby0
LPNE297246 ncbi Legionella pneumophila Paris0
LPNE297245 ncbi Legionella pneumophila Lens0
LPNE272624 ncbi Legionella pneumophila pneumophila Philadelphia 10
LPLA220668 ncbi Lactobacillus plantarum WCFS10
LMON265669 ncbi Listeria monocytogenes 4b F23650
LMON169963 ncbi Listeria monocytogenes EGD-e0
LMES203120 ncbi Leuconostoc mesenteroides mesenteroides ATCC 82930
LLAC272623 ncbi Lactococcus lactis lactis Il14030
LLAC272622 ncbi Lactococcus lactis cremoris SK110
LJOH257314 ncbi Lactobacillus johnsonii NCC 5330
LINT363253 ncbi Lawsonia intracellularis PHE/MN1-000
LINT267671 ncbi Leptospira interrogans serovar Copenhageni str. Fiocruz L1-1301
LINT189518 ncbi Leptospira interrogans serovar Lai str. 566011
LINN272626 ncbi Listeria innocua Clip112620
LHEL405566 ncbi Lactobacillus helveticus DPC 45710
LGAS324831 ncbi Lactobacillus gasseri ATCC 333230
LCHO395495 ncbi Leptothrix cholodnii SP-60
LBRE387344 ncbi Lactobacillus brevis ATCC 3670
LBIF456481 ncbi Leptospira biflexa serovar Patoc strain Patoc 1 (Paris)0
LBIF355278 ncbi Leptospira biflexa serovar Patoc strain Patoc 1 (Ames)0
LACI272621 ncbi Lactobacillus acidophilus NCFM0
KRAD266940 ncbi Kineococcus radiotolerans SRS302160
KPNE272620 ncbi Klebsiella pneumoniae pneumoniae MGH 785780
JSP375286 ncbi Janthinobacterium sp. Marseille0
JSP290400 ncbi Jannaschia sp. CCS10
ILOI283942 ncbi Idiomarina loihiensis L2TR0
IHOS453591 ncbi Ignicoccus hospitalis KIN4/I0
HWAL362976 ncbi Haloquadratum walsbyi DSM 167900
HSP64091 ncbi Halobacterium sp. NRC-10
HSOM228400 ncbi Haemophilus somnus 23360
HSOM205914 ncbi Haemophilus somnus 129PT0
HSAL478009 ncbi Halobacterium salinarum R10
HPYL85963 ncbi Helicobacter pylori J990
HPYL357544 ncbi Helicobacter pylori HPAG10
HPY ncbi Helicobacter pylori 266950
HNEP81032 Hyphomonas neptunium0
HMUK485914 ncbi Halomicrobium mukohataei DSM 122860
HMAR272569 ncbi Haloarcula marismortui ATCC 430490
HINF71421 ncbi Haemophilus influenzae Rd KW200
HINF374930 ncbi Haemophilus influenzae PittEE0
HINF281310 ncbi Haemophilus influenzae 86-028NP0
HHEP235279 ncbi Helicobacter hepaticus ATCC 514490
HHAL349124 ncbi Halorhodospira halophila SL10
HDUC233412 ncbi Haemophilus ducreyi 35000HP0
HCHE349521 ncbi Hahella chejuensis KCTC 23960
HBUT415426 ncbi Hyperthermus butylicus DSM 54560
HAUR316274 ncbi Herpetosiphon aurantiacus ATCC 237791
HARS204773 ncbi Herminiimonas arsenicoxydans0
HACI382638 ncbi Helicobacter acinonychis Sheeba0
GVIO251221 ncbi Gloeobacter violaceus PCC 74210
GTHE420246 ncbi Geobacillus thermodenitrificans NG80-20
GOXY290633 ncbi Gluconobacter oxydans 621H0
GMET269799 ncbi Geobacter metallireducens GS-150
GKAU235909 ncbi Geobacillus kaustophilus HTA4260
GFOR411154 ncbi Gramella forsetii KT08030
FTUL458234 ncbi Francisella tularensis holarctica FTNF002-000
FTUL418136 ncbi Francisella tularensis tularensis WY96-34180
FTUL401614 ncbi Francisella novicida U1120
FTUL393115 ncbi Francisella tularensis tularensis FSC1980
FTUL393011 ncbi Francisella tularensis holarctica OSU180
FTUL351581 Francisella tularensis holarctica FSC2000
FSUC59374 ncbi Fibrobacter succinogenes succinogenes S850
FSP1855 Frankia sp. EAN1pec1
FRANT ncbi Francisella tularensis tularensis SCHU S40
FPHI484022 ncbi Francisella philomiragia philomiragia ATCC 250170
FNUC190304 ncbi Fusobacterium nucleatum nucleatum ATCC 255861
FNOD381764 ncbi Fervidobacterium nodosum Rt17-B10
FJOH376686 ncbi Flavobacterium johnsoniae UW1010
ESP42895 Enterobacter sp.0
ERUM302409 ncbi Ehrlichia ruminantium Gardel0
ERUM254945 ncbi Ehrlichia ruminantium Welgevonden0
ELIT314225 ncbi Erythrobacter litoralis HTCC25940
EFAE226185 ncbi Enterococcus faecalis V5830
ECOL585397 ncbi Escherichia coli ED1a1
ECOL585057 ncbi Escherichia coli IAI390
ECOL585035 ncbi Escherichia coli S881
ECOL469008 ncbi Escherichia coli BL21(DE3)0
ECOL413997 ncbi Escherichia coli B str. REL6060
ECOL405955 ncbi Escherichia coli APEC O11
ECOL364106 ncbi Escherichia coli UTI891
ECOL362663 ncbi Escherichia coli 5360
ECOL199310 ncbi Escherichia coli CFT0730
ECHA205920 ncbi Ehrlichia chaffeensis Arkansas0
ECAR218491 ncbi Pectobacterium atrosepticum SCRI10431
ECAN269484 ncbi Ehrlichia canis Jake0
DVUL882 ncbi Desulfovibrio vulgaris Hildenborough0
DSP216389 ncbi Dehalococcoides sp. BAV10
DRED349161 ncbi Desulfotomaculum reducens MI-11
DRAD243230 ncbi Deinococcus radiodurans R10
DPSY177439 ncbi Desulfotalea psychrophila LSv540
DNOD246195 ncbi Dichelobacter nodosus VCS1703A0
DHAF138119 ncbi Desulfitobacterium hafniense Y510
DETH243164 ncbi Dehalococcoides ethenogenes 1950
DARO159087 ncbi Dechloromonas aromatica RCB0
CVIO243365 ncbi Chromobacterium violaceum ATCC 124720
CVES412965 ncbi Candidatus Vesicomyosocius okutanii HA0
CTRA471473 ncbi Chlamydia trachomatis L2b/UCH-1/proctitis0
CTRA471472 ncbi Chlamydia trachomatis 434/Bu0
CTET212717 ncbi Clostridium tetani E881
CSUL444179 ncbi Candidatus Sulcia muelleri GWSS0
CSP78 Caulobacter sp.0
CSP501479 Citreicella sp. SE450
CRUT413404 ncbi Candidatus Ruthia magnifica Cm (Calyptogena magnifica)0
CPSY167879 ncbi Colwellia psychrerythraea 34H0
CPRO264201 ncbi Candidatus Protochlamydia amoebophila UWE250
CPNE182082 ncbi Chlamydophila pneumoniae TW-1830
CPNE138677 ncbi Chlamydophila pneumoniae J1380
CPNE115713 ncbi Chlamydophila pneumoniae CWL0290
CPNE115711 ncbi Chlamydophila pneumoniae AR390
CPHY357809 ncbi Clostridium phytofermentans ISDg0
CPER289380 ncbi Clostridium perfringens SM1011
CPER195103 ncbi Clostridium perfringens ATCC 131240
CPER195102 ncbi Clostridium perfringens 130
CPEL335992 ncbi Candidatus Pelagibacter ubique HTCC10620
CNOV386415 ncbi Clostridium novyi NT0
CMUR243161 ncbi Chlamydia muridarum Nigg0
CMIC443906 ncbi Clavibacter michiganensis michiganensis NCPPB 3820
CMIC31964 ncbi Clavibacter michiganensis sepedonicus0
CMET456442 ncbi Candidatus Methanoregula boonei 6A80
CMAQ397948 ncbi Caldivirga maquilingensis IC-1671
CKOR374847 ncbi Candidatus Korarchaeum cryptofilum OPF81
CKLU431943 ncbi Clostridium kluyveri DSM 5550
CJEJ407148 ncbi Campylobacter jejuni jejuni 811160
CJEJ360109 ncbi Campylobacter jejuni doylei 269.970
CJEJ354242 ncbi Campylobacter jejuni jejuni 81-1760
CJEJ195099 ncbi Campylobacter jejuni RM12210
CJEJ192222 ncbi Campylobacter jejuni jejuni NCTC 111680
CJAP155077 Cellvibrio japonicus0
CHYD246194 ncbi Carboxydothermus hydrogenoformans Z-29011
CHUT269798 ncbi Cytophaga hutchinsonii ATCC 334060
CHOM360107 ncbi Campylobacter hominis ATCC BAA-3810
CGLU196627 ncbi Corynebacterium glutamicum ATCC 130320
CFET360106 ncbi Campylobacter fetus fetus 82-400
CFEL264202 ncbi Chlamydophila felis Fe/C-560
CEFF196164 ncbi Corynebacterium efficiens YS-3140
CDIF272563 ncbi Clostridium difficile 6301
CDES477974 ncbi Candidatus Desulforudis audaxviator MP104C1
CCUR360105 ncbi Campylobacter curvus 525.920
CCON360104 ncbi Campylobacter concisus 138260
CCHL340177 ncbi Chlorobium chlorochromatii CaD30
CCAV227941 ncbi Chlamydophila caviae GPIC0
CBUR434922 ncbi Coxiella burnetii Dugway 5J108-1111
CBUR360115 ncbi Coxiella burnetii RSA 3310
CBUR227377 ncbi Coxiella burnetii RSA 4930
CBOT536232 ncbi Clostridium botulinum A2 str. Kyoto0
CBOT515621 ncbi Clostridium botulinum Ba4 str. 6570
CBOT508765 ncbi Clostridium botulinum B str. Eklund 17B0
CBOT498213 ncbi Clostridium botulinum B1 str. Okra0
CBOT441772 ncbi Clostridium botulinum F str. Langeland0
CBOT441771 ncbi Clostridium botulinum A str. Hall0
CBOT441770 ncbi Clostridium botulinum A str. ATCC 193970
CBOT36826 Clostridium botulinum A0
CBLO291272 ncbi Candidatus Blochmannia pennsylvanicus BPEN0
CBLO203907 ncbi Candidatus Blochmannia floridanus0
CBEI290402 ncbi Clostridium beijerinckii NCIMB 80520
CAULO ncbi Caulobacter crescentus CB150
CACE272562 ncbi Clostridium acetobutylicum ATCC 8240
CABO218497 ncbi Chlamydophila abortus S26/30
BXEN266265 ncbi Burkholderia xenovorans LB4000
BWEI315730 ncbi Bacillus weihenstephanensis KBAB40
BVIE269482 ncbi Burkholderia vietnamiensis G40
BTUR314724 ncbi Borrelia turicatae 91E1350
BTRI382640 ncbi Bartonella tribocorum CIP 1054760
BTHU412694 ncbi Bacillus thuringiensis Al Hakam0
BTHU281309 ncbi Bacillus thuringiensis serovar konkukian str. 97-270
BTHE226186 ncbi Bacteroides thetaiotaomicron VPI-54820
BTHA271848 ncbi Burkholderia thailandensis E2640
BSUI470137 ncbi Brucella suis ATCC 234450
BSUI204722 ncbi Brucella suis 13300
BSUB ncbi Bacillus subtilis subtilis 1680
BSP376 Bradyrhizobium sp.0
BSP36773 Burkholderia sp.0
BSP107806 ncbi Buchnera aphidicola APS (Acyrthosiphon pisum)0
BQUI283165 ncbi Bartonella quintana Toulouse0
BPUM315750 ncbi Bacillus pumilus SAFR-0320
BPSE320373 ncbi Burkholderia pseudomallei 6680
BPSE320372 ncbi Burkholderia pseudomallei 1710b0
BPSE272560 ncbi Burkholderia pseudomallei K962430
BPET94624 Bordetella petrii0
BPER257313 ncbi Bordetella pertussis Tohama I0
BPAR257311 ncbi Bordetella parapertussis 128220
BOVI236 Brucella ovis0
BMEL359391 ncbi Brucella melitensis biovar Abortus 23080
BMEL224914 ncbi Brucella melitensis bv. 1 str. 16M0
BMAL320389 ncbi Burkholderia mallei NCTC 102470
BMAL320388 ncbi Burkholderia mallei SAVP10
BMAL243160 ncbi Burkholderia mallei ATCC 233440
BLON206672 ncbi Bifidobacterium longum NCC27050
BLIC279010 ncbi Bacillus licheniformis ATCC 145800
BJAP224911 ncbi Bradyrhizobium japonicum USDA 1100
BHER314723 ncbi Borrelia hermsii DAH0
BHEN283166 ncbi Bartonella henselae Houston-10
BHAL272558 ncbi Bacillus halodurans C-1250
BGAR290434 ncbi Borrelia garinii PBi0
BFRA295405 ncbi Bacteroides fragilis YCH461
BFRA272559 ncbi Bacteroides fragilis NCTC 93430
BCLA66692 ncbi Bacillus clausii KSM-K160
BCIC186490 Candidatus Baumannia cicadellinicola0
BCER572264 ncbi Bacillus cereus 03BB1020
BCER405917 Bacillus cereus W0
BCER315749 ncbi Bacillus cytotoxicus NVH 391-981
BCER288681 ncbi Bacillus cereus E33L0
BCER226900 ncbi Bacillus cereus ATCC 145790
BCEN331272 ncbi Burkholderia cenocepacia HI24240
BCEN331271 ncbi Burkholderia cenocepacia AU 10540
BCAN483179 ncbi Brucella canis ATCC 233650
BBUR224326 ncbi Borrelia burgdorferi B310
BBRO257310 ncbi Bordetella bronchiseptica RB500
BBAC360095 ncbi Bartonella bacilliformis KC5830
BBAC264462 ncbi Bdellovibrio bacteriovorus HD1000
BAPH372461 ncbi Buchnera aphidicola Cc (Cinara cedri)0
BAPH198804 ncbi Buchnera aphidicola Sg (Schizaphis graminum)0
BANT592021 ncbi Bacillus anthracis A02480
BANT568206 ncbi Bacillus anthracis CDC 6840
BANT261594 ncbi Bacillus anthracis Ames Ancestor0
BANT260799 ncbi Bacillus anthracis Sterne0
BAMY326423 ncbi Bacillus amyloliquefaciens FZB420
BAMB398577 ncbi Burkholderia ambifaria MC40-60
BAMB339670 ncbi Burkholderia ambifaria AMMD0
BAFZ390236 ncbi Borrelia afzelii PKo0
BABO262698 ncbi Brucella abortus bv. 1 str. 9-9410
AYEL322098 ncbi Aster yellows witches-broom phytoplasma AYWB0
AVAR240292 ncbi Anabaena variabilis ATCC 294130
AURANTIMONAS Aurantimonas manganoxydans SI85-9A10
ASP76114 ncbi Aromatoleum aromaticum EbN10
ASP62977 ncbi Acinetobacter sp. ADP10
ASP62928 ncbi Azoarcus sp. BH720
ASP232721 ncbi Acidovorax sp. JS421
ASP1667 Arthrobacter sp.0
ASAL382245 ncbi Aeromonas salmonicida salmonicida A4490
APLE434271 ncbi Actinobacillus pleuropneumoniae serovar 3 str. JL030
APLE416269 ncbi Actinobacillus pleuropneumoniae L200
APHA212042 ncbi Anaplasma phagocytophilum HZ0
APER272557 ncbi Aeropyrum pernix K11
AORE350688 ncbi Alkaliphilus oremlandii OhILAs0
ANAE240017 Actinomyces oris MG10
AMET293826 ncbi Alkaliphilus metalliredigens QYMF1
AMAR329726 ncbi Acaryochloris marina MBIC110170
AMAR234826 ncbi Anaplasma marginale St. Maries0
ALAI441768 ncbi Acholeplasma laidlawii PG-8A0
AHYD196024 Aeromonas hydrophila dhakensis0
AFUL224325 ncbi Archaeoglobus fulgidus DSM 43041
AFER243159 ncbi Acidithiobacillus ferrooxidans ATCC 232700
ADEH290397 ncbi Anaeromyxobacter dehalogenans 2CP-C0
ACEL351607 ncbi Acidothermus cellulolyticus 11B0
ACAU438753 ncbi Azorhizobium caulinodans ORS 5710
ABUT367737 ncbi Arcobacter butzleri RM40180
ABOR393595 ncbi Alcanivorax borkumensis SK20
ABAU360910 ncbi Bordetella avium 197N0
ABAC204669 ncbi Candidatus Koribacter versatilis Ellin3450
AAVE397945 ncbi Acidovorax citrulli AAC00-10
AAUR290340 ncbi Arthrobacter aurescens TC10
AAEO224324 ncbi Aquifex aeolicus VF51


Names of the homologs of the genes in the group in each of these orgs
  G7428   G7427   G7426   G7425   EG12845   EG12634   
ZMOB264203
YPSE349747 YPSIP31758_1535
YPSE273123 YPTB2510
YPES386656 YPDSF_1882
YPES377628 YPN_2063
YPES360102 YPA_1965
YPES349746 YPANGOLA_A1728
YPES214092 YPO2468
YPES187410 Y1722
YENT393305
XORY360094
XORY342109
XORY291331
XFAS405440
XFAS183190
XFAS160492
XCAM487884
XCAM316273 XCAORF_4278
XCAM314565
XCAM190485
XAXO190486
XAUT78245
WSUC273121
WPIP955
WPIP80849
VVUL216895
VVUL196600
VPAR223926
VFIS312309
VEIS391735 VEIS_1460
VCHO
UURE95667
UURE95664
UPAR505682
TWHI218496
TWHI203267
TVOL273116
TTUR377629
TTHE262724
TTEN273068 TTE2660
TSP28240
TSP1755 TETH514_2323
TROS309801 TRD_0020
TPSE340099 TETH39_0125
TPET390874 TPET_1084
TPEN368408 TPEN_1354
TPAL243276
TMAR243274
TLET416591
TKOD69014 TK0460
TERY203124
TELO197221
TDEN326298
TDEN292415
TDEN243275
TCRU317025
TACI273075
SWOL335541
STRO369723 STROP_1001
STOK273063 ST2639
STHE322159
STHE299768
STHE264199
SSUI391296
SSUI391295
SSP94122
SSP84588
SSP64471
SSP644076
SSP387093
SSP321332
SSP292414
SSP1148
SSP1131
SSOL273057 SSO1440
SSED425104
SSAP342451
SRUB309807
SPYO370554
SPYO370553
SPYO370552
SPYO370551
SPYO319701
SPYO293653
SPYO286636
SPYO198466
SPYO193567
SPYO186103
SPYO160490
SPRO399741
SPNE488221
SPNE487214
SPNE487213
SPNE171101
SPNE170187
SPNE1313
SPEA398579
SONE211586
SMUT210007
SMEL266834
SMED366394
SMAR399550 SMAR_0324
SLOI323850
SLAC55218
SHIGELLA
SHAL458817
SHAE279808
SGOR29390
SGLO343509
SFLE373384 SFV_2744
SFLE198214 AAN44266.1
SERY405948
SEPI176280
SEPI176279
SELO269084
SDEN318161
SDEG203122
SCO
SBAL402882
SBAL399599
SAUR93062
SAUR93061
SAUR426430
SAUR418127
SAUR367830
SAUR359787
SAUR359786
SAUR282459
SAUR282458
SAUR273036
SAUR196620
SAUR158879
SAUR158878
SALA317655
SAGA211110
SAGA208435
SAGA205921
SACI56780
SACI330779
RXYL266117 RXYL_0267
RTYP257363
RSPH349102 RSPH17025_3771
RSPH349101
RSPH272943 RSP_0604
RSP101510
RSOL267608
RSAL288705
RRIC452659
RRIC392021
RPRO272947
RPOM246200
RPAL316058
RPAL316057
RPAL316056
RPAL316055
RPAL258594
RMET266264
RMAS416276
RLEG216596
RFER338969 RFER_4348
RFEL315456
REUT381666
REUT264198
RETL347834
RDEN375451
RCON272944
RCAS383372 RCAS_3301
RCAN293613
RBEL391896
RBEL336407
RALB246199
RAKA293614
PTOR263820
PTHE370438
PSYR223283
PSYR205918
PSTU379731
PSP56811
PSP312153
PSP296591
PSP117
PRUM264731
PPUT76869
PPUT351746
PPUT160488
PPEN278197
PNAP365044
PMUL272843 PM0311
PMOB403833
PMAR93060
PMAR74547
PMAR74546
PMAR59920
PMAR167555
PMAR167546
PMAR167542
PMAR167540
PMAR167539
PMAR146891
PLUT319225
PISL384616
PINT246198
PHOR70601 PH0176
PHAL326442
PGIN242619 PG_2016
PFUR186497 PF1120
PFLU220664
PFLU216595
PFLU205922
PENT384676
PDIS435591
PCRY335284
PATL342610
PAST100379
PARS340102
PARC259536
PAER208964
PAER208963 PA14_33350
PAER178306
PACN267747
PABY272844 PAB1689
OTSU357244
OIHE221109
OCAR504832
OANT439375
NWIN323098
NSP387092
NSP35761
NSP103690
NSEN222891
NPHA348780
NOCE323261 NOC_2751
NMUL323848
NMEN374833
NMEN272831
NMEN122587
NMEN122586
NHAM323097
NGON242231
NEUT335283
NEUR228410
NARO279238
MXAN246197 MXAN_7264
MVAN350058
MTUB419947
MTUB336982
MTHE349307 MTHE_0641
MTHE264732 MOTH_1729
MTHE187420 MTH1086
MTBRV
MTBCDC
MSYN262723
MSUC221988
MSTA339860 MSP_0422
MSP409
MSP266779
MSP189918
MSP164757
MSP164756
MSME246196
MSED399549
MPUL272635
MPNE272634
MPET420662
MPEN272633
MMYC272632
MMOB267748
MMAZ192952
MMAR444158
MMAR426368
MMAR402880
MMAR394221
MMAR368407
MMAR267377
MMAG342108
MLOT266835
MLEP272631
MLAB410358
MKAN190192
MJAN243232 MJ_0376
MHYO295358
MHYO262722
MHYO262719
MGIL350054
MGEN243273
MFLO265311
MFLA265072
MEXT419610
MCAP340047
MBOV410289
MBOV233413
MBAR269797 MBAR_A0309
MAVI243243
MART243272
MAQU351348
MAER449447
MAEO419665 MAEO_1070
MACE188937 MA3665
MABS561007
LXYL281090
LWEL386043
LSPH444177
LSAK314315
LREU557436
LPNE400673
LPNE297246
LPNE297245
LPNE272624
LPLA220668
LMON265669
LMON169963
LMES203120
LLAC272623
LLAC272622
LJOH257314
LINT363253
LINT267671 LIC_10938
LINT189518 LA3189
LINN272626
LHEL405566
LGAS324831
LCHO395495
LBRE387344
LBIF456481
LBIF355278
LACI272621
KRAD266940
KPNE272620
JSP375286
JSP290400
ILOI283942
IHOS453591
HWAL362976
HSP64091
HSOM228400
HSOM205914
HSAL478009
HPYL85963
HPYL357544
HPY
HNEP81032
HMUK485914
HMAR272569
HINF71421
HINF374930
HINF281310
HHEP235279
HHAL349124
HDUC233412
HCHE349521
HBUT415426
HAUR316274 HAUR_5079
HARS204773
HACI382638
GVIO251221
GTHE420246
GOXY290633
GMET269799
GKAU235909
GFOR411154
FTUL458234
FTUL418136
FTUL401614
FTUL393115
FTUL393011
FTUL351581
FSUC59374
FSP1855 FRANEAN1_1390
FRANT
FPHI484022
FNUC190304 FN1179
FNOD381764
FJOH376686
ESP42895
ERUM302409
ERUM254945
ELIT314225
EFAE226185
ECOL585397 ECED1_0850
ECOL585057
ECOL585035 ECS88_0905
ECOL469008
ECOL413997
ECOL405955 APECO1_1211
ECOL364106 UTI89_C0890
ECOL362663
ECOL199310
ECHA205920
ECAR218491 ECA3679
ECAN269484
DVUL882
DSP216389
DRED349161 DRED_0539
DRAD243230
DPSY177439
DNOD246195
DHAF138119
DETH243164
DARO159087
CVIO243365
CVES412965
CTRA471473
CTRA471472
CTET212717 CTC_01146
CSUL444179
CSP78
CSP501479
CRUT413404
CPSY167879
CPRO264201
CPNE182082
CPNE138677
CPNE115713
CPNE115711
CPHY357809
CPER289380 CPR_0922
CPER195103
CPER195102
CPEL335992
CNOV386415
CMUR243161
CMIC443906
CMIC31964
CMET456442
CMAQ397948 CMAQ_1525
CKOR374847 KCR_0433
CKLU431943
CJEJ407148
CJEJ360109
CJEJ354242
CJEJ195099
CJEJ192222
CJAP155077
CHYD246194 CHY_2154
CHUT269798
CHOM360107
CGLU196627
CFET360106
CFEL264202
CEFF196164
CDIF272563 CD2451
CDES477974 DAUD_1290
CCUR360105
CCON360104
CCHL340177
CCAV227941
CBUR434922 COXBU7E912_1942
CBUR360115
CBUR227377
CBOT536232
CBOT515621
CBOT508765
CBOT498213
CBOT441772
CBOT441771
CBOT441770
CBOT36826
CBLO291272
CBLO203907
CBEI290402
CAULO
CACE272562
CABO218497
BXEN266265
BWEI315730
BVIE269482
BTUR314724
BTRI382640
BTHU412694
BTHU281309
BTHE226186
BTHA271848
BSUI470137
BSUI204722
BSUB
BSP376
BSP36773
BSP107806
BQUI283165
BPUM315750
BPSE320373
BPSE320372
BPSE272560
BPET94624
BPER257313
BPAR257311
BOVI236
BMEL359391
BMEL224914
BMAL320389
BMAL320388
BMAL243160
BLON206672
BLIC279010
BJAP224911
BHER314723
BHEN283166
BHAL272558
BGAR290434
BFRA295405 BF2548
BFRA272559
BCLA66692
BCIC186490
BCER572264
BCER405917
BCER315749 BCER98_2024
BCER288681
BCER226900
BCEN331272
BCEN331271
BCAN483179
BBUR224326
BBRO257310
BBAC360095
BBAC264462
BAPH372461
BAPH198804
BANT592021
BANT568206
BANT261594
BANT260799
BAMY326423
BAMB398577
BAMB339670
BAFZ390236
BABO262698
AYEL322098
AVAR240292
AURANTIMONAS
ASP76114
ASP62977
ASP62928
ASP232721 AJS_0489
ASP1667
ASAL382245
APLE434271
APLE416269
APHA212042
APER272557 APE1232
AORE350688
ANAE240017
AMET293826 AMET_2193
AMAR329726
AMAR234826
ALAI441768
AHYD196024
AFUL224325 AF_0071
AFER243159
ADEH290397
ACEL351607
ACAU438753
ABUT367737
ABOR393595
ABAU360910
ABAC204669
AAVE397945
AAUR290340
AAEO224324 AQ_371


Organism features enriched in list (features available for 519 out of the 558 orgs in the list)
Feature    Pvalue       Num occurrences in list  Total num occurrences  
Arrangment:Filaments 0.0020289510
GC_Content_Range4:0-40 1.133e-12212213
GC_Content_Range4:40-60 5.700e-7181224
GC_Content_Range7:0-30 0.00332014747
GC_Content_Range7:30-40 3.218e-9165166
GC_Content_Range7:50-60 7.830e-878107
Genome_Size_Range5:0-2 0.0000127151155
Genome_Size_Range5:4-6 0.0005327152184
Genome_Size_Range9:1-2 0.0003023124128
Genome_Size_Range9:3-4 0.00317156177
Habitat:Multiple 0.0032911149178
Oxygen_Req:Facultative 0.0054416170201
Shape:Rod 0.0057182300347



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ORGANISMS ENRICHED FOR GROUP:

Total number of orgs: 4
Effective number of orgs (counting one per cluster within 468 clusters): 3

Organism list
Homologs in each organism in the list
Features enriched in organism list


Follow (ncbi) link, when present, to find the set of organism features for each organism
Org ID  Org Name    Pvalue       # genes in tgt genome found in org  # genes in group found in org  
MBUR259564 ncbi Methanococcoides burtonii DSM 6242 0.00036424636
UMET351160 ncbi uncultured methanogenic archaeon RC-I 0.00120995656
LBOR355277 ncbi Leptospira borgpetersenii serovar Hardjo-bovis JB197 0.00599737376
LBOR355276 ncbi Leptospira borgpetersenii serovar Hardjo-bovis L550 0.00640017456


Names of the homologs of the genes in the group in each of these orgs
  G7428   G7427   G7426   G7425   EG12845   EG12634   
MBUR259564 MBUR_0596MBUR_0597MBUR_0598MBUR_0599MBUR_0600MBUR_0593
UMET351160 RCIX1150RCIX1151RCIX1152RCIX1153RCIX1154RCIX1147
LBOR355277 LBJ_2451LBJ_2452LBJ_2453LBJ_2455LBJ_2456LBJ_2448
LBOR355276 LBL_0661LBL_0660LBL_0659LBL_0657LBL_0656LBL_0664


Organism features enriched in list (features available for 4 out of the 4 orgs in the list)
Feature    Pvalue       Num occurrences in list  Total num occurrences  
Disease:Leptospirosis 0.000210724
Genome_Size_Range9:3-4 0.0077693377
Optimal_temp.:23.4 0.006861111
Pathogenic_in:Cattle 0.000523226



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ORGANISMS DEPLETED FOR GROUP:

Total number of orgs: 5
Effective number of orgs (counting one per cluster within 468 clusters): 1

Organism list
Homologs in each organism in the list
Features enriched in organism list


Follow (ncbi) link, when present, to find the set of organism features for each organism
Org ID  Org Name    Pvalue       # genes in tgt genome found in org  # genes in group found in org  
ECOL362663 ncbi Escherichia coli 536 0.003628738110
ECOL199310 ncbi Escherichia coli CFT073 0.003085938290
ECOL585057 ncbi Escherichia coli IAI39 0.002222538640
ECOL469008 ncbi Escherichia coli BL21(DE3) 0.001051539370
ECOL413997 ncbi Escherichia coli B str. REL606 0.000962939450


Organism features enriched in list (features available for 5 out of the 5 orgs in the list)
Feature    Pvalue       Num occurrences in list  Total num occurrences  
Disease:Urinary_tract_infection 0.000350024
GC_Content_Range4:40-60 0.00814425224
GC_Content_Range7:50-60 0.00019275107
Genome_Size_Range5:4-6 0.00301595184
Oxygen_Req:Facultative 0.00471345201



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PHYLOGENETIC PROFILE SIMILARITY WITH KNOWN PATHWAYS:

Pathways or complexes with absolute value of Pearson coefficient with respect to candidate larger than 0.4 are listed below
The candidate is assumed to exist in orgs listed in section List of organisms containing most genes from the group


Pathway or complex  # Orgs containing it  # of those orgs also containing candidate  Pearson Coeff  



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PAIRWISE GENOME CONTEXT SCORE MATRIX:

  G7427   G7426   G7425   EG12845   EG12634   
G74280.9993910.9991180.9992810.9991120.999306
G74270.9991380.999250.9990450.999133
G74260.9991790.9989770.998887
G74250.9993480.999183
EG128450.998946
EG12634



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PAIRWISE BLAST SCORES:

  G7428   G7427   G7426   G7425   EG12845   EG12634   
G74280.0f0-----
G7427-0.0f0----
G7426--0.0f0---
G7425---0.0f0--
EG12845----0.0f0-
EG12634-----0.0f0



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PATHWAYS OR PROTEIN COMPLEX MATCHES IN TARGET ORG:

For each case, all genes involved in the pathway or complex are listed. For each gene we list: a tag indicating whether the gene is part of the candidate list or not, the average and the minimum scores of the gene to the candidate list, the gene name, and its product names.

- CPLX0-7725 (CRISPR-associated complex for antiviral defense) (degree of match pw to cand: 0.600, degree of match cand to pw: 0.500, average score: 0.994)
  Genes in pathway or complex:
   *in cand* 0.9992 0.9989 G7426 (casE) G7426-MONOMER (crRNA endonuclease)
   *in cand* 0.9993 0.9990 G7427 (casD) G7427-MONOMER (Cascade subunit D)
   *in cand* 0.9994 0.9991 G7428 (casC) G7428-MONOMER (Cascade subunit C)
             0.9873 0.9824 G7429 (casB) G7429-MONOMER (Cascade subunit B)
             0.9956 0.9926 G7430 (casA) G7430-MONOMER (Cascade subunit A)
  Genes in candidate but not in this pathway or complex:
   *in cand* 0.9992 0.9989 EG12634 (cas3) EG12634-MONOMER (predicted fused HD nuclease and DEAD box helicase)
   *in cand* 0.9992 0.9989 EG12845 (cas2) EG12845-MONOMER (predicted endoribonuclease)
   *in cand* 0.9994 0.9992 G7425 (cas1) G7425-MONOMER (predicted integrase)



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GENOME CONTEXT INFORMATION:

Each row corresponds to a replicon in an organism, each column to a gene in the candidate. The second column indicates whether the organims was included in the list used to compute the genome context scores or not. Some organisms are not included because they are phylogenetically too similar to others already in the list.
The number in the matrix indicate the position of the homolog of the gene in the replicon. All numbers are relative to the smaller one, which is assigned a position of zero. Two columns with the same number indicate that the two genes matched the same gene in that organism.

Genome browser links for gene clusters

The links below opens a genome browser BioCyc page for each cluster of genes in the target genome. These pages shows the central gene of the cluster in the target genome and its best homolog in the reference genomes, for the genomes that contain homologs for at least 75% of the genes in the group. Only one genome per phylogenetic cluster of organisms is shown, to keep the list smaller.

EG12634 EG12845 G7425 G7426 G7427 G7428 (centered at G7427)


ORG:REPLICON:CIRC?\GENE  IN REF LIST  G7428   G7427   G7426   G7425   EG12845   EG12634   
64/62357/62348/62382/62354/623108/623
AAEO224324:0:Tyes-----0
ACRY349163:6:Tyes3-5--0
ACRY349163:8:Tyes-2-0--
AEHR187272:0:Tyes32-106
AFUL224325:0:Tyes-----0
AMET293826:0:Tyes-----0
APER272557:0:Tyes-----0
ASP232721:2:Tyes---0--
BCER315749:1:Tyes-----0
BFRA295405:0:Tno-----0
CBUR434922:2:Tno---0--
CDES477974:0:Tyes-----0
CDIF272563:1:Tyes-----0
CDIP257309:0:Tyes0--564
CHYD246194:0:Tyes-----0
CJEI306537:0:Tyes3--0-6
CKOR374847:0:Tyes-----0
CMAQ397948:0:Tyes-----0
CPER289380:3:Tyes-----0
CSAL290398:0:Tyes567890
CTEP194439:0:Tyes4--670
CTET212717:0:Tyes-----0
DDES207559:0:Tyes543108
DGEO319795:0:Tyes5-3108
DOLE96561:0:Tyes345670
DRED349161:0:Tyes-----0
DSHI398580:5:Tyes34-670
DSP255470:0:Tno3210-6
ECAR218491:0:Tyes---0--
ECOL316407:0:Tno432107
ECOL331111:6:Tno432107
ECOL364106:1:Tno---0--
ECOL405955:2:Tyes---0--
ECOL409438:6:Tyes432107
ECOL439855:4:Tno432107
ECOL481805:0:Tno345670
ECOL585034:0:Tno432107
ECOL585035:0:Tno---0--
ECOL585055:0:Tno432107
ECOL585056:2:Tno321-06
ECOL585397:0:Tno---0--
ECOL83334:0:Tno432107
ECOLI:0:Tno432107
ECOO157:0:Tno432107
EFER585054:1:Tyes345670
FALN326424:0:Tyes345670
FMAG334413:0:Tyes10----
FNUC190304:0:Tyes-----0
FSP106370:0:Tyes34-670
FSP1855:0:Tyes-----0
GBET391165:0:Tyes4322-107
GSUL243231:0:Tyes345890
GURA351605:0:Tyes4539110
HAUR316274:1:Tyes-----0
HMOD498761:0:Tyes21-0-5
LBOR355276:1:Tyes543108
LBOR355277:1:Tno345780
LCAS321967:1:Tyes345670
LDEL321956:0:Tyes34-670
LDEL390333:0:Tyes34-670
LINT189518:1:Tyes-----0
LINT267671:1:Tno-----0
MACE188937:0:Tyes-----0
MAEO419665:0:Tyes-----0
MBAR269797:1:Tyes-----0
MBUR259564:0:Tyes345670
MCAP243233:0:Tyes43-107
MHUN323259:0:Tyes43210-
MJAN243232:2:Tyes-----0
MSP400668:0:Tyes54-108
MSTA339860:0:Tyes-----0
MTHE187420:0:Tyes-----0
MTHE264732:0:Tyes-----0
MTHE349307:0:Tyes-----0
MXAN246197:0:Tyes-----0
NFAR247156:2:Tyes3210-6
NOCE323261:1:Tyes---0--
PABY272844:0:Tyes-----0
PAER208963:0:Tyes---0--
PCAR338963:0:Tyes345890
PFUR186497:0:Tyes-----0
PGIN242619:0:Tyes-----0
PHOR70601:0:Tyes-----0
PING357804:0:Tyes341670
PLUM243265:0:Fyes34---0
PMEN399739:0:Tyes432109
PMUL272843:1:Tyes---0--
PPRO298386:0:Tyes436107
RCAS383372:0:Tyes-----0
RFER338969:0:Tyes---0--
RRUB269796:1:Tyes17632107
RSP357808:0:Tyes3210-6
RSPH272943:4:Tyes-----0
RSPH349102:4:Tyes----0-
RXYL266117:0:Tyes-----0
SARE391037:0:Tyes0125624556
SAVE227882:1:Fyes3210-6
SBOY300268:1:Tyes345670
SDYS300267:1:Tyes--210-
SENT209261:0:Tno432107
SENT220341:0:Tno432107
SENT295319:0:Tno43210-
SENT321314:2:Tno43210-
SENT454169:2:Tno432107
SFLE198214:0:Tyes-----0
SFLE373384:0:Tno-----0
SFUM335543:0:Tyes3-5670
SMAR399550:0:Tyes-----0
SSOL273057:0:Tyes-----0
SSON300269:1:Tyes43--011
SSP321327:0:Tyes4-2107
STHE292459:0:Tyes4560-1
STOK273063:0:Tyes-----0
STRO369723:0:Tyes-----0
STYP99287:1:Tyes432107
TFUS269800:0:Tyes32-0-6
TKOD69014:0:Tyes-----0
TPEN368408:1:Tyes-----0
TPET390874:0:Tno-----0
TPSE340099:0:Tyes-----0
TROS309801:1:Tyes-----0
TSP1755:0:Tyes-----0
TTEN273068:0:Tyes-----0
TTHE300852:1:Tyes3-5670
UMET351160:0:Tyes432107
VCHO345073:1:Tno45-6-0
VEIS391735:1:Tyes---0--
XCAM316273:0:Tno---0--
YPES187410:5:Tno---0--
YPES214092:3:Tno---0--
YPES349746:2:Tno---0--
YPES360102:3:Tyes---0--
YPES377628:2:Tno---0--
YPES386656:2:Tno---0--
YPSE273123:2:Tno---0--
YPSE349747:2:Tno---0--



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