CANDIDATE ID: 376

CANDIDATE ID: 376

NUMBER OF GENES: 6
AVERAGE SCORE:    9.9905653e-1 (range=[0.0,1.0])
AVERAGE MINIMUM BLAST P-VAL:    3.3333333e-1

Gene List
List of organisms containing most genes from the group
    Phylogenetic tree highlighting these organisms (opens new page)
List of organisms containing very few or no genes from the group
List of organisms enriched for group
List of organisms depleted for group
Phylogenetic profile similarity with known pathways
Pairwise genome context scores
Pairwise Blast scores
Pathway or protein complex matches in target organism
Genome context matrix
    Genes and their orthologs in genome browser BioCyc pages



GENE LIST:

- G7860 (ulaF) (b4198)
   Products of gene:
     - G7860-MONOMER (L-ribulose 5-phosphate 4-epimerase)
       Reactions:
        L-ribulose-5-phosphate  =  D-xylulose-5-phosphate
         In pathways
         PWY-5257 (PWY-5257)
         ARABCAT-PWY (L-arabinose degradation I)
         PWY0-301 (L-ascorbate degradation, anaerobic)
         LYXMET-PWY (L-lyxose degradation)

- G7859 (ulaE) (b4197)
   Products of gene:
     - G7859-MONOMER (L-xylulose 5-phosphate 3-epimerase)
       Reactions:
        L-xylulose-5-phosphate  ->  L-ribulose-5-phosphate
         In pathways
         PWY-5257 (PWY-5257)
         PWY0-301 (L-ascorbate degradation, anaerobic)
         LYXMET-PWY (L-lyxose degradation)

- G7858 (ulaD) (b4196)
   Products of gene:
     - G7858-MONOMER (3-keto-L-gulonate 6-phosphate decarboxylase)
     - CPLX0-7744 (3-keto-L-gulonate 6-phosphate decarboxylase)
       Reactions:
        3-keto-L-gulonate 6-phosphate + H+  ->  L-xylulose-5-phosphate + CO2
         In pathways
         PWY0-301 (L-ascorbate degradation, anaerobic)

- EG12494 (ulaB) (b4194)
   Products of gene:
     - YJFT-MONOMER (UlaB)
     - EIISGA (L-ascorbate transporting phosphotransferase system)
       Reactions:
        phosphoenolpyruvate + L-ascorbate-6-phosphate[periplasmic space]  ->  L-ascorbate-6-phosphate[cytosol] + pyruvate

- EG12286 (sgbU) (b3582)
   Products of gene:
     - EG12286-MONOMER (predicted L-xylulose 5-phosphate 3-epimerase)
       Reactions:
        L-xylulose-5-phosphate  ->  L-ribulose-5-phosphate
         In pathways
         PWY-5257 (PWY-5257)
         PWY0-301 (L-ascorbate degradation, anaerobic)
         LYXMET-PWY (L-lyxose degradation)

- EG12285 (sgbH) (b3581)
   Products of gene:
     - EG12285-MONOMER (3-keto-L-gulonate 6-phosphate decarboxylase)
       Reactions:
        3-keto-L-gulonate 6-phosphate + H+  ->  L-xylulose-5-phosphate + CO2
         In pathways
         PWY0-301 (L-ascorbate degradation, anaerobic)



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ORGANISMS CONTAINING AT LEAST 5 GENES FROM THE GROUP:

Total number of orgs: 86
Effective number of orgs (counting one per cluster within 468 clusters): 40

Organism list
Homologs in each organism in the list
Features enriched in organism list


Follow (ncbi) link, when present, to find the set of organism features for each organism
Org ID  Org Name  # genes in group found in org  
VVUL216895 ncbi Vibrio vulnificus CMCP66
VVUL196600 ncbi Vibrio vulnificus YJ0166
VCHO345073 ncbi Vibrio cholerae O3956
VCHO ncbi Vibrio cholerae O1 biovar El Tor str. N169616
TWHI218496 ncbi Tropheryma whipplei TW08/275
TWHI203267 ncbi Tropheryma whipplei Twist5
STYP99287 ncbi Salmonella enterica enterica serovar Typhimurium str. LT26
SSUI391296 ncbi Streptococcus suis 98HAH336
SSUI391295 ncbi Streptococcus suis 05ZYH336
SSON300269 ncbi Shigella sonnei Ss0466
SPYO370554 ncbi Streptococcus pyogenes MGAS107506
SPYO370553 ncbi Streptococcus pyogenes MGAS20966
SPYO370552 ncbi Streptococcus pyogenes MGAS102706
SPYO370551 ncbi Streptococcus pyogenes MGAS94296
SPYO319701 ncbi Streptococcus pyogenes MGAS61806
SPYO293653 ncbi Streptococcus pyogenes MGAS50056
SPYO286636 ncbi Streptococcus pyogenes MGAS103946
SPYO198466 ncbi Streptococcus pyogenes MGAS3156
SPYO193567 ncbi Streptococcus pyogenes SSI-16
SPYO186103 ncbi Streptococcus pyogenes MGAS82326
SPYO160490 ncbi Streptococcus pyogenes M1 GAS6
SPRO399741 ncbi Serratia proteamaculans 5685
SPNE488221 ncbi Streptococcus pneumoniae 705856
SPNE487214 ncbi Streptococcus pneumoniae Hungary19A-66
SPNE487213 ncbi Streptococcus pneumoniae Taiwan19F-146
SPNE171101 ncbi Streptococcus pneumoniae R66
SPNE170187 ncbi Streptococcus pneumoniae G546
SPNE1313 Streptococcus pneumoniae6
SMUT210007 ncbi Streptococcus mutans UA1596
SHIGELLA ncbi Shigella flexneri 2a str. 2457T6
SFLE373384 ncbi Shigella flexneri 5 str. 84016
SFLE198214 ncbi Shigella flexneri 2a str. 3016
SENT454169 ncbi Salmonella enterica enterica serovar Heidelberg str. SL4766
SENT321314 ncbi Salmonella enterica enterica serovar Choleraesuis str. SC-B676
SENT295319 ncbi Salmonella enterica enterica serovar Paratyphi A str. ATCC 91506
SENT220341 ncbi Salmonella enterica enterica serovar Typhi str. CT186
SENT209261 ncbi Salmonella enterica enterica serovar Typhi str. Ty26
SBOY300268 ncbi Shigella boydii Sb2276
SAGA211110 ncbi Streptococcus agalactiae NEM3166
SAGA208435 ncbi Streptococcus agalactiae 2603V/R6
SAGA205921 ncbi Streptococcus agalactiae A9096
PSP117 Pirellula sp.5
PPRO298386 ncbi Photobacterium profundum SS96
PMUL272843 ncbi Pasteurella multocida multocida Pm706
PACN267747 ncbi Propionibacterium acnes KPA1712025
OIHE221109 ncbi Oceanobacillus iheyensis HTE8316
MSYN262723 ncbi Mycoplasma synoviae 536
MSUC221988 ncbi Mannheimia succiniciproducens MBEL55E6
MPUL272635 ncbi Mycoplasma pulmonis UAB CTIP6
MPNE272634 ncbi Mycoplasma pneumoniae M1296
MPEN272633 ncbi Mycoplasma penetrans HF-26
MHYO295358 ncbi Mycoplasma hyopneumoniae 2326
MHYO262722 ncbi Mycoplasma hyopneumoniae 74486
MHYO262719 ncbi Mycoplasma hyopneumoniae J6
LMES203120 ncbi Leuconostoc mesenteroides mesenteroides ATCC 82935
LCAS321967 ncbi Lactobacillus casei ATCC 3345
KPNE272620 ncbi Klebsiella pneumoniae pneumoniae MGH 785786
HSOM228400 ncbi Haemophilus somnus 23365
HSOM205914 ncbi Haemophilus somnus 129PT5
HINF71421 ncbi Haemophilus influenzae Rd KW205
HDUC233412 ncbi Haemophilus ducreyi 35000HP6
EFER585054 ncbi Escherichia fergusonii ATCC 354696
EFAE226185 ncbi Enterococcus faecalis V5836
ECOO157 ncbi Escherichia coli O157:H7 EDL9336
ECOL83334 Escherichia coli O157:H76
ECOL585397 ncbi Escherichia coli ED1a6
ECOL585057 ncbi Escherichia coli IAI396
ECOL585056 ncbi Escherichia coli UMN0266
ECOL585055 ncbi Escherichia coli 559896
ECOL585035 ncbi Escherichia coli S886
ECOL585034 ncbi Escherichia coli IAI16
ECOL481805 ncbi Escherichia coli ATCC 87396
ECOL469008 ncbi Escherichia coli BL21(DE3)6
ECOL439855 ncbi Escherichia coli SMS-3-56
ECOL413997 ncbi Escherichia coli B str. REL6066
ECOL409438 ncbi Escherichia coli SE116
ECOL405955 ncbi Escherichia coli APEC O15
ECOL364106 ncbi Escherichia coli UTI896
ECOL362663 ncbi Escherichia coli 5366
ECOL331111 ncbi Escherichia coli E24377A6
ECOL316407 ncbi Escherichia coli K-12 substr. W31106
ECOL199310 ncbi Escherichia coli CFT0736
CMAQ397948 ncbi Caldivirga maquilingensis IC-1675
BCLA66692 ncbi Bacillus clausii KSM-K166
APLE434271 ncbi Actinobacillus pleuropneumoniae serovar 3 str. JL036
APLE416269 ncbi Actinobacillus pleuropneumoniae L206


Names of the homologs of the genes in the group in each of these orgs
  G7860   G7859   G7858   EG12494   EG12286   EG12285   
VVUL216895 VV2_1082VV2_1085VV2_1084VV2_1080VV2_1085VV2_1084
VVUL196600 VVA1606VVA1609VVA1608VVA1604VVA1609VVA1608
VCHO345073 VC0395_0985VC0395_0988VC0395_0987VC0395_0983VC0395_0988VC0395_0987
VCHO VCA0244VCA0241VCA0242VCA0246VCA0241VCA0242
TWHI218496 TW0635TW0636TW0637TW0636TW0637
TWHI203267 TW647TW648TW649TW648TW649
STYP99287 STM4388STM4387STM4386STM4384STM3676STM3675
SSUI391296 SSU98_2061SSU98_2062SSU98_2063SSU98_2065SSU98_2062SSU98_2063
SSUI391295 SSU05_2058SSU05_2059SSU05_2060SSU05_2062SSU05_2059SSU05_2060
SSON300269 SSO_4380SSO_4379SSO_4378SSO_4376SSO_4379SSO_4378
SPYO370554 MGAS10750_SPY0159MGAS10750_SPY0158MGAS10750_SPY0157MGAS10750_SPY0155MGAS10750_SPY0158MGAS10750_SPY0157
SPYO370553 MGAS2096_SPY0161MGAS2096_SPY0160MGAS2096_SPY0159MGAS2096_SPY0157MGAS2096_SPY0160MGAS2096_SPY0159
SPYO370552 MGAS10270_SPY0155MGAS10270_SPY0154MGAS10270_SPY0153MGAS10270_SPY0151MGAS10270_SPY0154MGAS10270_SPY0153
SPYO370551 MGAS9429_SPY0155MGAS9429_SPY0154MGAS9429_SPY0153MGAS9429_SPY0151MGAS9429_SPY0154MGAS9429_SPY0153
SPYO319701 M28_SPY0151M28_SPY0150M28_SPY0149M28_SPY0147M28_SPY0150M28_SPY0149
SPYO293653 M5005_SPY0153M5005_SPY0152M5005_SPY0151M5005_SPY0149M5005_SPY0152M5005_SPY0151
SPYO286636 M6_SPY0199M6_SPY0198M6_SPY0197M6_SPY0195M6_SPY0198M6_SPY0197
SPYO198466 SPYM3_0140SPYM3_0139SPYM3_0138SPYM3_0136SPYM3_0139SPYM3_0138
SPYO193567 SPS0143SPS0142SPS0141SPS0139SPS0142SPS0141
SPYO186103 SPYM18_0178SPYM18_0177SPYM18_0176SPYM18_0174SPYM18_0177SPYM18_0176
SPYO160490 SPY0179SPY0178SPY0177SPY0175SPY0178SPY0177
SPRO399741 SPRO_3939SPRO_3938SPRO_3937SPRO_3938SPRO_3937
SPNE488221 SP70585_2119SP70585_2120SP70585_2121SP70585_2123SP70585_2120SP70585_2121
SPNE487214 SPH_2186SPH_2187SPH_2188SPH_2190SPH_2187SPH_2188
SPNE487213 SPT_2028SPT_2029SPT_2030SPT_2032SPT_2029SPT_2030
SPNE171101 SPR1844SPR1845SPR1846SPR1848SPR1845SPR1846
SPNE170187 SPN20053SPN20051SPN20050SPN20047SPN20051SPN20050
SPNE1313 SPJ_2039SPJ_2040SPJ_2041SPJ_2043SPJ_2040SPJ_2041
SMUT210007 SMU_275SMU_274SMU_273SMU_271SMU_274SMU_273
SHIGELLA SGAESGAUSGAHSGABSGAUSGAH
SFLE373384 SFV_4354SFV_4353SFV_4352SFV_4350SFV_3957SFV_3958
SFLE198214 AAN45770.1AAN45769.1AAN45768.1AAN45766.1AAN45769.1AAN45768.1
SENT454169 SEHA_C4806SEHA_C4805SEHA_C4804SEHA_C4802SEHA_C3999SEHA_C3998
SENT321314 SCH_4262SCH_4261SCH_4260SCH_4258SCH_3602SCH_3601
SENT295319 SPA4205SPA4204SPA4203SPA4201SPA3527SPA3526
SENT220341 STY4744STY4743STY4742STY4740STY4120STY4121
SENT209261 T4439T4438T4437T4435T3843T3844
SBOY300268 SBO_0048SBO_4258SBO_4259SBO_4261SBO_4258SBO_4259
SAGA211110 GBS1851GBS1852GBS1853GBS1855GBS1852GBS1853
SAGA208435 SAG_1810SAG_1811SAG_1812SAG_1814SAG_1811SAG_1812
SAGA205921 SAK_1830SAK_1831SAK_1832SAK_1834SAK_1831SAK_1832
PSP117 RB2568RB1574RB5319RB1574RB5319
PPRO298386 PBPRB0275PBPRB0269PBPRB0276PBPRB0273PBPRB0269PBPRB0276
PMUL272843 PM1244PM1245PM1246PM0764PM1245PM1246
PACN267747 PPA0882PPA0881PPA0880PPA0881PPA0880
OIHE221109 OB2798OB3400OB2806OB3415OB3419OB2806
MSYN262723 MS53_0031MS53_0030MS53_0029MS53_0682MS53_0030MS53_0029
MSUC221988 MS0046MS0047MS0056MS0022MS0047MS0020
MPUL272635 MYPU_5990MYPU_5980MYPU_5970MYPU_5950MYPU_5980MYPU_5970
MPNE272634 MPN498MPN492MPN493MPN495MPN492MPN493
MPEN272633 MYPE7160MYPE7170MYPE7180MYPE7200MYPE7170MYPE7180
MHYO295358 MHP439MHP440MHP441MHP387MHP440MHP441
MHYO262722 MHP7448_0436MHP7448_0437MHP7448_0438MHP7448_0375MHP7448_0437MHP7448_0438
MHYO262719 MHJ_0434MHJ_0435MHJ_0436MHJ_0371MHJ_0435MHJ_0436
LMES203120 LEUM_0855LEUM_1993LEUM_1994LEUM_1993LEUM_1994
LCAS321967 LSEI_2731LSEI_2733LSEI_2735LSEI_2733LSEI_2735
KPNE272620 GKPORF_B3951GKPORF_B3950GKPORF_B3949GKPORF_B3947GKPORF_B3297GKPORF_B3296
HSOM228400 HSM_1240HSM_1239HSM_1238HSM_1239HSM_1238
HSOM205914 HS_0773HS_0772HS_0771HS_0772HS_0771
HINF71421 HI_1025HI_1026HI_1024HI_1026HI_1024
HDUC233412 HD_1866HD_1864HD_1857HD_1860HD_1864HD_1857
EFER585054 EFER_4251EFER_4250EFER_4249EFER_4247EFER_3580EFER_3579
EFAE226185 EF_1131EF_1130EF_1129EF_1128EF_1130EF_1129
ECOO157 SGAESGAUSGAHSGABSGAUSGAH
ECOL83334 ECS5174ECS5173ECS5172ECS5170ECS5173ECS5172
ECOL585397 ECED1_5048ECED1_5047ECED1_4983ECED1_4981ECED1_4271ECED1_4270
ECOL585057 ECIAI39_4663ECIAI39_4662ECIAI39_4661ECIAI39_4659ECIAI39_4094ECIAI39_4093
ECOL585056 ECUMN_4731ECUMN_4730ECUMN_4729ECUMN_4727ECUMN_4095ECUMN_4094
ECOL585055 EC55989_4755EC55989_4754EC55989_4753EC55989_4751EC55989_4039EC55989_4038
ECOL585035 ECS88_4784ECS88_4783ECS88_4782ECS88_4780ECS88_4002ECS88_4001
ECOL585034 ECIAI1_4431ECIAI1_4430ECIAI1_4429ECIAI1_4427ECIAI1_3749ECIAI1_3748
ECOL481805 ECOLC_3815ECOLC_3816ECOLC_3817ECOLC_3819ECOLC_0132ECOLC_0133
ECOL469008 ECBD_3836ECBD_3837ECBD_3838ECBD_3840ECBD_0152ECBD_0153
ECOL439855 ECSMS35_4669ECSMS35_4668ECSMS35_4667ECSMS35_4665ECSMS35_3905ECSMS35_3904
ECOL413997 ECB_04065ECB_04064ECB_04063ECB_04061ECB_03434ECB_03433
ECOL409438 ECSE_4496ECSE_4495ECSE_4494ECSE_4492ECSE_3858ECSE_3857
ECOL405955 APECO1_2194APECO1_2195APECO1_2196APECO1_2868APECO1_2869
ECOL364106 UTI89_C4798UTI89_C4797UTI89_C4796UTI89_C4794UTI89_C4126UTI89_C4125
ECOL362663 ECP_4443ECP_4442ECP_4441ECP_4439ECP_3687ECP_3686
ECOL331111 ECE24377A_4759ECE24377A_4758ECE24377A_4757ECE24377A_4754ECE24377A_4079ECE24377A_4078
ECOL316407 ECK4194:JW4156:B4198ECK4193:JW4155:B4197ECK4192:JW4154:B4196ECK4190:JW4152:B4194ECK3571:JW5650:B3582ECK3570:JW3553:B3581
ECOL199310 C5288C5287C5285C5283C4405C4404
CMAQ397948 CMAQ_1697CMAQ_1496CMAQ_1871CMAQ_1496CMAQ_1871
BCLA66692 ABC0406ABC3437ABC3351ABC0946ABC3437ABC3351
APLE434271 APJL_1736APJL_1735APJL_1730APJL_1732APJL_1735APJL_1730
APLE416269 APL_1704APL_1703APL_1698APL_1700APL_1703APL_1698


Organism features enriched in list (features available for 83 out of the 86 orgs in the list)
Feature    Pvalue       Num occurrences in list  Total num occurrences  
Arrangment:Chains 1.589e-62992
Arrangment:Pairs 0.000751827112
Disease:Dysentery 0.000273256
Disease:Gastroenteritis 0.0044464613
Disease:Meningitis 0.008686747
Disease:None 0.0046625258
Disease:Pneumonia 2.370e-6912
Disease:Urinary_tract_infection 0.000385744
Disease:Wide_range_of_infections 2.679e-101111
Disease:endocarditis 0.009643034
Endospores:No 0.000021847211
Endospores:Yes 0.0089378253
GC_Content_Range4:40-60 0.000021149224
GC_Content_Range7:50-60 1.393e-632107
Genome_Size_Range5:4-6 0.002591437184
Genome_Size_Range5:6-10 0.0045434147
Genome_Size_Range9:3-4 0.0003217277
Habitat:Aquatic 0.0002205391
Habitat:Host-associated 2.897e-852206
Motility:No 0.001110833151
Optimal_temp.:- 0.000959824257
Optimal_temp.:20-30 0.008686747
Optimal_temp.:30-35 0.000043167
Optimal_temp.:37 3.799e-936106
Oxygen_Req:Aerobic 1.438e-113185
Oxygen_Req:Anaerobic 0.00004333102
Oxygen_Req:Facultative 1.441e-3075201
Pathogenic_in:Human 6.973e-1360213
Pathogenic_in:No 1.991e-108226
Pathogenic_in:Swine 0.000052655
Salinity:Non-halophilic 0.000038229106
Shape:Coccus 0.00006712482
Shape:Sphere 0.0085886719
Temp._range:Mesophilic 0.000012580473



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ORGANISMS CONTAINING AT MOST 1 GENES FROM THE GROUP:

Total number of orgs: 440
Effective number of orgs (counting one per cluster within 468 clusters): 355

Organism list
Homologs in each organism in the list
Features enriched in organism list


Follow (ncbi) link, when present, to find the set of organism features for each organism
Org ID  Org Name  # genes in group found in org  
ZMOB264203 ncbi Zymomonas mobilis mobilis ZM40
YENT393305 ncbi Yersinia enterocolitica enterocolitica 80811
XORY360094 ncbi Xanthomonas oryzae pv. oryzae PXO99A0
XORY342109 ncbi Xanthomonas oryzae pv. oryzae MAFF 3110180
XORY291331 ncbi Xanthomonas oryzae pv. oryzae KACC103310
XFAS405440 ncbi Xylella fastidiosa M121
XFAS183190 ncbi Xylella fastidiosa Temecula10
XFAS160492 ncbi Xylella fastidiosa 9a5c0
XCAM487884 Xanthomonas campestris pv. paulliniae1
XCAM316273 ncbi Xanthomonas campestris pv. vesicatoria str. 85-101
XCAM314565 ncbi Xanthomonas campestris pv. campestris str. 80041
XCAM190485 ncbi Xanthomonas campestris pv. campestris str. ATCC 339131
XAXO190486 ncbi Xanthomonas axonopodis pv. citri str. 3061
XAUT78245 ncbi Xanthobacter autotrophicus Py20
WSUC273121 ncbi Wolinella succinogenes DSM 17400
WPIP955 Wolbachia pipientis0
WPIP80849 Wolbachia endosymbiont of Brugia malayi0
VFIS312309 ncbi Vibrio fischeri ES1141
VEIS391735 ncbi Verminephrobacter eiseniae EF01-21
UURE95667 Ureaplasma urealyticum serovar 130
UURE95664 Ureaplasma urealyticum serovar 100
UPAR505682 ncbi Ureaplasma parvum serovar 3 str. ATCC 278150
TVOL273116 ncbi Thermoplasma volcanium GSS11
TTUR377629 ncbi Teredinibacter turnerae T79010
TTHE300852 ncbi Thermus thermophilus HB80
TTHE262724 ncbi Thermus thermophilus HB270
TSP28240 Thermotoga sp.1
TROS309801 ncbi Thermomicrobium roseum DSM 51590
TPET390874 ncbi Thermotoga petrophila RKU-11
TPAL243276 ncbi Treponema pallidum pallidum Nichols0
TMAR243274 ncbi Thermotoga maritima MSB81
TLET416591 ncbi Thermotoga lettingae TMO1
TFUS269800 ncbi Thermobifida fusca YX0
TERY203124 ncbi Trichodesmium erythraeum IMS1010
TELO197221 ncbi Thermosynechococcus elongatus BP-10
TDEN326298 ncbi Sulfurimonas denitrificans DSM 12510
TDEN292415 ncbi Thiobacillus denitrificans ATCC 252590
TDEN243275 ncbi Treponema denticola ATCC 354051
TCRU317025 ncbi Thiomicrospira crunogena XCL-20
TACI273075 ncbi Thermoplasma acidophilum DSM 17280
SWOL335541 ncbi Syntrophomonas wolfei wolfei Goettingen1
STRO369723 ncbi Salinispora tropica CNB-4400
STHE322159 ncbi Streptococcus thermophilus LMD-90
STHE299768 ncbi Streptococcus thermophilus CNRZ10660
STHE264199 ncbi Streptococcus thermophilus LMG 183110
SSP94122 ncbi Shewanella sp. ANA-31
SSP84588 ncbi Synechococcus sp. WH 81021
SSP64471 ncbi Synechococcus sp. CC93110
SSP644076 Silicibacter sp. TrichCH4B0
SSP387093 ncbi Sulfurovum sp. NBC37-10
SSP321332 ncbi Synechococcus sp. JA-2-3Ba(2-13)0
SSP321327 ncbi Synechococcus sp. JA-3-3Ab0
SSP292414 ncbi Ruegeria sp. TM10400
SSP1148 ncbi Synechocystis sp. PCC 68030
SSP1131 Synechococcus sp. CC96050
SSED425104 ncbi Shewanella sediminis HAW-EB30
SRUB309807 ncbi Salinibacter ruber DSM 138550
SPEA398579 ncbi Shewanella pealeana ATCC 7003450
SONE211586 ncbi Shewanella oneidensis MR-10
SMEL266834 ncbi Sinorhizobium meliloti 10211
SMED366394 ncbi Sinorhizobium medicae WSM4191
SLOI323850 ncbi Shewanella loihica PV-40
SLAC55218 Ruegeria lacuscaerulensis0
SHAL458817 ncbi Shewanella halifaxensis HAW-EB40
SGOR29390 Streptococcus gordonii Challis0
SGLO343509 ncbi Sodalis glossinidius morsitans1
SFUM335543 ncbi Syntrophobacter fumaroxidans MPOB1
SELO269084 ncbi Synechococcus elongatus PCC 63010
SDEN318161 ncbi Shewanella denitrificans OS2170
SDEG203122 ncbi Saccharophagus degradans 2-401
SBAL402882 ncbi Shewanella baltica OS1850
SBAL399599 ncbi Shewanella baltica OS1950
SAVE227882 ncbi Streptomyces avermitilis MA-46801
SARE391037 ncbi Salinispora arenicola CNS-2050
SALA317655 ncbi Sphingopyxis alaskensis RB22560
SACI56780 ncbi Syntrophus aciditrophicus SB0
RXYL266117 ncbi Rubrobacter xylanophilus DSM 99411
RTYP257363 ncbi Rickettsia typhi Wilmington0
RSPH349102 ncbi Rhodobacter sphaeroides ATCC 170250
RSPH349101 ncbi Rhodobacter sphaeroides ATCC 170291
RSPH272943 ncbi Rhodobacter sphaeroides 2.4.11
RSP357808 ncbi Roseiflexus sp. RS-10
RSOL267608 ncbi Ralstonia solanacearum GMI10000
RSAL288705 ncbi Renibacterium salmoninarum ATCC 332090
RRUB269796 ncbi Rhodospirillum rubrum ATCC 111701
RRIC452659 ncbi Rickettsia rickettsii Iowa0
RRIC392021 ncbi Rickettsia rickettsii Sheila Smith0
RPRO272947 ncbi Rickettsia prowazekii Madrid E0
RPOM246200 ncbi Ruegeria pomeroyi DSS-30
RPAL316058 ncbi Rhodopseudomonas palustris HaA20
RPAL316057 ncbi Rhodopseudomonas palustris BisB51
RPAL316056 ncbi Rhodopseudomonas palustris BisB180
RPAL316055 ncbi Rhodopseudomonas palustris BisA530
RPAL258594 ncbi Rhodopseudomonas palustris CGA0091
RMET266264 ncbi Ralstonia metallidurans CH340
RMAS416276 ncbi Rickettsia massiliae MTU50
RLEG216596 ncbi Rhizobium leguminosarum bv. viciae 38411
RFER338969 ncbi Rhodoferax ferrireducens T1181
RFEL315456 ncbi Rickettsia felis URRWXCal20
REUT381666 ncbi Ralstonia eutropha H160
REUT264198 ncbi Ralstonia eutropha JMP1340
RETL347834 ncbi Rhizobium etli CFN 420
RDEN375451 ncbi Roseobacter denitrificans OCh 1141
RCON272944 ncbi Rickettsia conorii Malish 70
RCAS383372 ncbi Roseiflexus castenholzii DSM 139410
RCAN293613 ncbi Rickettsia canadensis McKiel0
RBEL391896 ncbi Rickettsia bellii OSU 85-3890
RBEL336407 ncbi Rickettsia bellii RML369-C0
RALB246199 Ruminococcus albus 81
RAKA293614 ncbi Rickettsia akari Hartford0
PTOR263820 ncbi Picrophilus torridus DSM 97901
PTHE370438 ncbi Pelotomaculum thermopropionicum SI0
PSYR223283 ncbi Pseudomonas syringae pv. tomato str. DC30001
PSYR205918 ncbi Pseudomonas syringae pv. syringae B728a1
PSTU379731 ncbi Pseudomonas stutzeri A15010
PSP56811 Psychrobacter sp.0
PSP312153 ncbi Polynucleobacter necessarius asymbioticus QLW-P1DMWA-10
PSP296591 ncbi Polaromonas sp. JS6660
PRUM264731 ncbi Prevotella ruminicola 231
PPUT76869 ncbi Pseudomonas putida GB-10
PPUT351746 ncbi Pseudomonas putida F10
PPUT160488 ncbi Pseudomonas putida KT24400
PPEN278197 ncbi Pediococcus pentosaceus ATCC 257451
PNAP365044 ncbi Polaromonas naphthalenivorans CJ20
PMOB403833 ncbi Petrotoga mobilis SJ951
PMEN399739 ncbi Pseudomonas mendocina ymp0
PMAR93060 ncbi Prochlorococcus marinus MIT 92150
PMAR74547 ncbi Prochlorococcus marinus MIT 93131
PMAR74546 ncbi Prochlorococcus marinus MIT 93120
PMAR59920 ncbi Prochlorococcus marinus NATL2A0
PMAR167555 ncbi Prochlorococcus marinus NATL1A0
PMAR167546 ncbi Prochlorococcus marinus MIT 93010
PMAR167542 ncbi Prochlorococcus marinus MIT 95150
PMAR167540 Prochlorococcus marinus pastoris MED4ax0
PMAR167539 ncbi Prochlorococcus marinus marinus CCMP13750
PMAR146891 ncbi Prochlorococcus marinus AS96010
PLUT319225 ncbi Chlorobium luteolum DSM 2730
PLUM243265 ncbi Photorhabdus luminescens laumondii TTO10
PINT246198 Prevotella intermedia 170
PING357804 ncbi Psychromonas ingrahamii 370
PHAL326442 ncbi Pseudoalteromonas haloplanktis TAC1250
PGIN242619 ncbi Porphyromonas gingivalis W830
PFLU220664 ncbi Pseudomonas fluorescens Pf-51
PFLU216595 ncbi Pseudomonas fluorescens SBW251
PFLU205922 ncbi Pseudomonas fluorescens Pf0-10
PENT384676 ncbi Pseudomonas entomophila L480
PDIS435591 ncbi Parabacteroides distasonis ATCC 85030
PCRY335284 ncbi Psychrobacter cryohalolentis K50
PCAR338963 ncbi Pelobacter carbinolicus DSM 23801
PATL342610 ncbi Pseudoalteromonas atlantica T6c0
PAST100379 Onion yellows phytoplasma0
PARC259536 ncbi Psychrobacter arcticus 273-40
PAER208964 ncbi Pseudomonas aeruginosa PAO11
PAER208963 ncbi Pseudomonas aeruginosa UCBPP-PA141
OTSU357244 ncbi Orientia tsutsugamushi Boryong0
OCAR504832 ncbi Oligotropha carboxidovorans OM50
OANT439375 ncbi Ochrobactrum anthropi ATCC 491880
NWIN323098 ncbi Nitrobacter winogradskyi Nb-2550
NSP387092 ncbi Nitratiruptor sp. SB155-20
NSP35761 Nocardioides sp.1
NSP103690 ncbi Nostoc sp. PCC 71200
NSEN222891 ncbi Neorickettsia sennetsu Miyayama0
NPHA348780 ncbi Natronomonas pharaonis DSM 21600
NOCE323261 ncbi Nitrosococcus oceani ATCC 197070
NMUL323848 ncbi Nitrosospira multiformis ATCC 251960
NMEN374833 ncbi Neisseria meningitidis 0534420
NMEN272831 ncbi Neisseria meningitidis FAM180
NMEN122587 ncbi Neisseria meningitidis Z24910
NMEN122586 ncbi Neisseria meningitidis MC580
NHAM323097 ncbi Nitrobacter hamburgensis X140
NGON242231 ncbi Neisseria gonorrhoeae FA 10900
NFAR247156 ncbi Nocardia farcinica IFM 101521
NEUT335283 ncbi Nitrosomonas eutropha C910
NEUR228410 ncbi Nitrosomonas europaea ATCC 197180
NARO279238 ncbi Novosphingobium aromaticivorans DSM 124440
MXAN246197 ncbi Myxococcus xanthus DK 16220
MVAN350058 ncbi Mycobacterium vanbaalenii PYR-10
MTUB419947 ncbi Mycobacterium tuberculosis H37Ra1
MTUB336982 ncbi Mycobacterium tuberculosis F111
MTHE264732 ncbi Moorella thermoacetica ATCC 390731
MTBRV ncbi Mycobacterium tuberculosis H37Rv1
MTBCDC ncbi Mycobacterium tuberculosis CDC15511
MSTA339860 ncbi Methanosphaera stadtmanae DSM 30911
MSP400668 ncbi Marinomonas sp. MWYL11
MSP266779 ncbi Chelativorans sp. BNC10
MSP189918 ncbi Mycobacterium sp. KMS0
MSP164757 ncbi Mycobacterium sp. JLS0
MSP164756 ncbi Mycobacterium sp. MCS0
MSME246196 ncbi Mycobacterium smegmatis MC2 1551
MPET420662 ncbi Methylibium petroleiphilum PM10
MMYC272632 ncbi Mycoplasma mycoides mycoides SC str. PG10
MMOB267748 ncbi Mycoplasma mobile 163K0
MMAR394221 ncbi Maricaulis maris MCS100
MMAG342108 ncbi Magnetospirillum magneticum AMB-10
MLEP272631 ncbi Mycobacterium leprae TN0
MGIL350054 ncbi Mycobacterium gilvum PYR-GCK0
MGEN243273 ncbi Mycoplasma genitalium G370
MFLO265311 ncbi Mesoplasma florum L10
MEXT419610 ncbi Methylobacterium extorquens PA11
MCAP340047 ncbi Mycoplasma capricolum capricolum ATCC 273430
MBOV410289 ncbi Mycobacterium bovis BCG str. Pasteur 1173P21
MBOV233413 ncbi Mycobacterium bovis AF2122/971
MAVI243243 ncbi Mycobacterium avium 1041
MART243272 ncbi Mycoplasma arthritidis 158L3-10
MAQU351348 ncbi Marinobacter aquaeolei VT81
MAER449447 ncbi Microcystis aeruginosa NIES-8430
MABS561007 ncbi Mycobacterium abscessus ATCC 199770
LXYL281090 ncbi Leifsonia xyli xyli CTCB071
LWEL386043 ncbi Listeria welshimeri serovar 6b str. SLCC53341
LSPH444177 ncbi Lysinibacillus sphaericus C3-410
LSAK314315 ncbi Lactobacillus sakei sakei 23K1
LREU557436 ncbi Lactobacillus reuteri DSM 200161
LPNE400673 ncbi Legionella pneumophila Corby0
LPNE297246 ncbi Legionella pneumophila Paris0
LPNE297245 ncbi Legionella pneumophila Lens0
LPNE272624 ncbi Legionella pneumophila pneumophila Philadelphia 10
LPLA220668 ncbi Lactobacillus plantarum WCFS11
LMON265669 ncbi Listeria monocytogenes 4b F23651
LMON169963 ncbi Listeria monocytogenes EGD-e1
LLAC272623 ncbi Lactococcus lactis lactis Il14030
LLAC272622 ncbi Lactococcus lactis cremoris SK110
LJOH257314 ncbi Lactobacillus johnsonii NCC 5330
LINT363253 ncbi Lawsonia intracellularis PHE/MN1-000
LINT267671 ncbi Leptospira interrogans serovar Copenhageni str. Fiocruz L1-1300
LINT189518 ncbi Leptospira interrogans serovar Lai str. 566010
LINN272626 ncbi Listeria innocua Clip112621
LHEL405566 ncbi Lactobacillus helveticus DPC 45710
LGAS324831 ncbi Lactobacillus gasseri ATCC 333230
LDEL390333 ncbi Lactobacillus delbrueckii bulgaricus ATCC 118420
LDEL321956 ncbi Lactobacillus delbrueckii bulgaricus ATCC BAA-3650
LCHO395495 ncbi Leptothrix cholodnii SP-61
LBOR355277 ncbi Leptospira borgpetersenii serovar Hardjo-bovis JB1970
LBOR355276 ncbi Leptospira borgpetersenii serovar Hardjo-bovis L5500
LBIF456481 ncbi Leptospira biflexa serovar Patoc strain Patoc 1 (Paris)0
LBIF355278 ncbi Leptospira biflexa serovar Patoc strain Patoc 1 (Ames)0
LACI272621 ncbi Lactobacillus acidophilus NCFM0
JSP375286 ncbi Janthinobacterium sp. Marseille0
JSP290400 ncbi Jannaschia sp. CCS11
ILOI283942 ncbi Idiomarina loihiensis L2TR0
HWAL362976 ncbi Haloquadratum walsbyi DSM 167900
HSP64091 ncbi Halobacterium sp. NRC-11
HSAL478009 ncbi Halobacterium salinarum R11
HPYL85963 ncbi Helicobacter pylori J990
HPYL357544 ncbi Helicobacter pylori HPAG10
HPY ncbi Helicobacter pylori 266950
HNEP81032 Hyphomonas neptunium0
HMUK485914 ncbi Halomicrobium mukohataei DSM 122860
HMOD498761 ncbi Heliobacterium modesticaldum Ice11
HMAR272569 ncbi Haloarcula marismortui ATCC 430491
HINF374930 ncbi Haemophilus influenzae PittEE1
HINF281310 ncbi Haemophilus influenzae 86-028NP1
HHEP235279 ncbi Helicobacter hepaticus ATCC 514490
HHAL349124 ncbi Halorhodospira halophila SL10
HCHE349521 ncbi Hahella chejuensis KCTC 23961
HAUR316274 ncbi Herpetosiphon aurantiacus ATCC 237791
HARS204773 ncbi Herminiimonas arsenicoxydans0
HACI382638 ncbi Helicobacter acinonychis Sheeba0
GVIO251221 ncbi Gloeobacter violaceus PCC 74210
GURA351605 ncbi Geobacter uraniireducens Rf40
GSUL243231 ncbi Geobacter sulfurreducens PCA0
GOXY290633 ncbi Gluconobacter oxydans 621H0
GMET269799 ncbi Geobacter metallireducens GS-150
GKAU235909 ncbi Geobacillus kaustophilus HTA4261
GFOR411154 ncbi Gramella forsetii KT08031
GBET391165 ncbi Granulibacter bethesdensis CGDNIH10
FTUL458234 ncbi Francisella tularensis holarctica FTNF002-000
FTUL418136 ncbi Francisella tularensis tularensis WY96-34180
FTUL401614 ncbi Francisella novicida U1120
FTUL393115 ncbi Francisella tularensis tularensis FSC1980
FTUL393011 ncbi Francisella tularensis holarctica OSU180
FTUL351581 Francisella tularensis holarctica FSC2000
FSUC59374 ncbi Fibrobacter succinogenes succinogenes S850
FSP1855 Frankia sp. EAN1pec0
FSP106370 ncbi Frankia sp. CcI30
FRANT ncbi Francisella tularensis tularensis SCHU S40
FPHI484022 ncbi Francisella philomiragia philomiragia ATCC 250170
FNUC190304 ncbi Fusobacterium nucleatum nucleatum ATCC 255861
FNOD381764 ncbi Fervidobacterium nodosum Rt17-B11
FMAG334413 ncbi Finegoldia magna ATCC 293280
FJOH376686 ncbi Flavobacterium johnsoniae UW1011
FALN326424 ncbi Frankia alni ACN14a0
ESP42895 Enterobacter sp.1
ERUM302409 ncbi Ehrlichia ruminantium Gardel0
ERUM254945 ncbi Ehrlichia ruminantium Welgevonden0
ELIT314225 ncbi Erythrobacter litoralis HTCC25940
ECHA205920 ncbi Ehrlichia chaffeensis Arkansas0
ECAR218491 ncbi Pectobacterium atrosepticum SCRI10431
ECAN269484 ncbi Ehrlichia canis Jake0
DVUL882 ncbi Desulfovibrio vulgaris Hildenborough0
DSP255470 ncbi Dehalococcoides sp. CBDB10
DSP216389 ncbi Dehalococcoides sp. BAV10
DSHI398580 ncbi Dinoroseobacter shibae DFL 121
DRED349161 ncbi Desulfotomaculum reducens MI-11
DRAD243230 ncbi Deinococcus radiodurans R10
DPSY177439 ncbi Desulfotalea psychrophila LSv540
DOLE96561 ncbi Desulfococcus oleovorans Hxd30
DNOD246195 ncbi Dichelobacter nodosus VCS1703A0
DHAF138119 ncbi Desulfitobacterium hafniense Y511
DGEO319795 ncbi Deinococcus geothermalis DSM 113000
DETH243164 ncbi Dehalococcoides ethenogenes 1950
DDES207559 ncbi Desulfovibrio desulfuricans desulfuricans G200
DARO159087 ncbi Dechloromonas aromatica RCB1
CVIO243365 ncbi Chromobacterium violaceum ATCC 124720
CVES412965 ncbi Candidatus Vesicomyosocius okutanii HA0
CTRA471473 ncbi Chlamydia trachomatis L2b/UCH-1/proctitis0
CTRA471472 ncbi Chlamydia trachomatis 434/Bu0
CTET212717 ncbi Clostridium tetani E881
CTEP194439 ncbi Chlorobium tepidum TLS0
CSUL444179 ncbi Candidatus Sulcia muelleri GWSS0
CSP501479 Citreicella sp. SE451
CSAL290398 ncbi Chromohalobacter salexigens DSM 30430
CRUT413404 ncbi Candidatus Ruthia magnifica Cm (Calyptogena magnifica)0
CPSY167879 ncbi Colwellia psychrerythraea 34H0
CPRO264201 ncbi Candidatus Protochlamydia amoebophila UWE250
CPNE182082 ncbi Chlamydophila pneumoniae TW-1830
CPNE138677 ncbi Chlamydophila pneumoniae J1380
CPNE115713 ncbi Chlamydophila pneumoniae CWL0290
CPNE115711 ncbi Chlamydophila pneumoniae AR390
CPHY357809 ncbi Clostridium phytofermentans ISDg1
CPER289380 ncbi Clostridium perfringens SM1011
CPEL335992 ncbi Candidatus Pelagibacter ubique HTCC10620
CNOV386415 ncbi Clostridium novyi NT1
CMUR243161 ncbi Chlamydia muridarum Nigg0
CKLU431943 ncbi Clostridium kluyveri DSM 5550
CJEJ407148 ncbi Campylobacter jejuni jejuni 811160
CJEJ360109 ncbi Campylobacter jejuni doylei 269.970
CJEJ354242 ncbi Campylobacter jejuni jejuni 81-1760
CJEJ195099 ncbi Campylobacter jejuni RM12210
CJEJ192222 ncbi Campylobacter jejuni jejuni NCTC 111680
CJEI306537 ncbi Corynebacterium jeikeium K4110
CJAP155077 Cellvibrio japonicus1
CHYD246194 ncbi Carboxydothermus hydrogenoformans Z-29011
CHUT269798 ncbi Cytophaga hutchinsonii ATCC 334060
CHOM360107 ncbi Campylobacter hominis ATCC BAA-3810
CGLU196627 ncbi Corynebacterium glutamicum ATCC 130320
CFET360106 ncbi Campylobacter fetus fetus 82-400
CFEL264202 ncbi Chlamydophila felis Fe/C-560
CEFF196164 ncbi Corynebacterium efficiens YS-3140
CDIP257309 ncbi Corynebacterium diphtheriae NCTC 131290
CDES477974 ncbi Candidatus Desulforudis audaxviator MP104C1
CCUR360105 ncbi Campylobacter curvus 525.920
CCON360104 ncbi Campylobacter concisus 138260
CCHL340177 ncbi Chlorobium chlorochromatii CaD30
CCAV227941 ncbi Chlamydophila caviae GPIC0
CBUR434922 ncbi Coxiella burnetii Dugway 5J108-1110
CBUR360115 ncbi Coxiella burnetii RSA 3310
CBUR227377 ncbi Coxiella burnetii RSA 4930
CBOT536232 ncbi Clostridium botulinum A2 str. Kyoto1
CBOT515621 ncbi Clostridium botulinum Ba4 str. 6570
CBOT498213 ncbi Clostridium botulinum B1 str. Okra0
CBOT441772 ncbi Clostridium botulinum F str. Langeland0
CBOT441771 ncbi Clostridium botulinum A str. Hall1
CBOT441770 ncbi Clostridium botulinum A str. ATCC 193971
CBOT36826 Clostridium botulinum A1
CBLO291272 ncbi Candidatus Blochmannia pennsylvanicus BPEN0
CBLO203907 ncbi Candidatus Blochmannia floridanus0
CAULO ncbi Caulobacter crescentus CB150
CABO218497 ncbi Chlamydophila abortus S26/30
BXEN266265 ncbi Burkholderia xenovorans LB4001
BWEI315730 ncbi Bacillus weihenstephanensis KBAB41
BVIE269482 ncbi Burkholderia vietnamiensis G40
BTUR314724 ncbi Borrelia turicatae 91E1350
BTRI382640 ncbi Bartonella tribocorum CIP 1054760
BTHU412694 ncbi Bacillus thuringiensis Al Hakam1
BTHU281309 ncbi Bacillus thuringiensis serovar konkukian str. 97-271
BTHE226186 ncbi Bacteroides thetaiotaomicron VPI-54821
BTHA271848 ncbi Burkholderia thailandensis E2641
BSUI470137 ncbi Brucella suis ATCC 234451
BSUI204722 ncbi Brucella suis 13301
BSP376 Bradyrhizobium sp.1
BSP36773 Burkholderia sp.0
BSP107806 ncbi Buchnera aphidicola APS (Acyrthosiphon pisum)0
BQUI283165 ncbi Bartonella quintana Toulouse0
BPSE320373 ncbi Burkholderia pseudomallei 6681
BPSE320372 ncbi Burkholderia pseudomallei 1710b1
BPSE272560 ncbi Burkholderia pseudomallei K962431
BPET94624 Bordetella petrii1
BPER257313 ncbi Bordetella pertussis Tohama I0
BPAR257311 ncbi Bordetella parapertussis 128220
BOVI236 Brucella ovis0
BMEL359391 ncbi Brucella melitensis biovar Abortus 23081
BMEL224914 ncbi Brucella melitensis bv. 1 str. 16M1
BMAL320389 ncbi Burkholderia mallei NCTC 102471
BMAL320388 ncbi Burkholderia mallei SAVP10
BMAL243160 ncbi Burkholderia mallei ATCC 233441
BLON206672 ncbi Bifidobacterium longum NCC27051
BJAP224911 ncbi Bradyrhizobium japonicum USDA 1101
BHER314723 ncbi Borrelia hermsii DAH0
BHEN283166 ncbi Bartonella henselae Houston-10
BGAR290434 ncbi Borrelia garinii PBi0
BFRA295405 ncbi Bacteroides fragilis YCH460
BFRA272559 ncbi Bacteroides fragilis NCTC 93430
BCIC186490 Candidatus Baumannia cicadellinicola0
BCER572264 ncbi Bacillus cereus 03BB1021
BCER315749 ncbi Bacillus cytotoxicus NVH 391-980
BCER226900 ncbi Bacillus cereus ATCC 145791
BCEN331272 ncbi Burkholderia cenocepacia HI24240
BCEN331271 ncbi Burkholderia cenocepacia AU 10540
BCAN483179 ncbi Brucella canis ATCC 233651
BBUR224326 ncbi Borrelia burgdorferi B310
BBRO257310 ncbi Bordetella bronchiseptica RB500
BBAC360095 ncbi Bartonella bacilliformis KC5830
BBAC264462 ncbi Bdellovibrio bacteriovorus HD1000
BAPH372461 ncbi Buchnera aphidicola Cc (Cinara cedri)0
BAPH198804 ncbi Buchnera aphidicola Sg (Schizaphis graminum)0
BANT592021 ncbi Bacillus anthracis A02481
BANT568206 ncbi Bacillus anthracis CDC 6841
BANT261594 ncbi Bacillus anthracis Ames Ancestor1
BANT260799 ncbi Bacillus anthracis Sterne1
BAMB398577 ncbi Burkholderia ambifaria MC40-60
BAMB339670 ncbi Burkholderia ambifaria AMMD0
BAFZ390236 ncbi Borrelia afzelii PKo0
BABO262698 ncbi Brucella abortus bv. 1 str. 9-9411
AYEL322098 ncbi Aster yellows witches-broom phytoplasma AYWB0
AVAR240292 ncbi Anabaena variabilis ATCC 294130
AURANTIMONAS Aurantimonas manganoxydans SI85-9A10
ASP76114 ncbi Aromatoleum aromaticum EbN10
ASP62977 ncbi Acinetobacter sp. ADP10
ASP62928 ncbi Azoarcus sp. BH720
ASP232721 ncbi Acidovorax sp. JS420
ASAL382245 ncbi Aeromonas salmonicida salmonicida A4491
APHA212042 ncbi Anaplasma phagocytophilum HZ0
AORE350688 ncbi Alkaliphilus oremlandii OhILAs0
ANAE240017 Actinomyces oris MG11
AMET293826 ncbi Alkaliphilus metalliredigens QYMF1
AMAR329726 ncbi Acaryochloris marina MBIC110170
AMAR234826 ncbi Anaplasma marginale St. Maries0
ALAI441768 ncbi Acholeplasma laidlawii PG-8A0
AHYD196024 Aeromonas hydrophila dhakensis1
AFER243159 ncbi Acidithiobacillus ferrooxidans ATCC 232700
AEHR187272 ncbi Alkalilimnicola ehrlichii MLHE-10
ADEH290397 ncbi Anaeromyxobacter dehalogenans 2CP-C0
ACRY349163 ncbi Acidiphilium cryptum JF-51
ACEL351607 ncbi Acidothermus cellulolyticus 11B1
ACAU438753 ncbi Azorhizobium caulinodans ORS 5710
ABUT367737 ncbi Arcobacter butzleri RM40180
ABOR393595 ncbi Alcanivorax borkumensis SK20
ABAU360910 ncbi Bordetella avium 197N0
AAVE397945 ncbi Acidovorax citrulli AAC00-10
AAEO224324 ncbi Aquifex aeolicus VF51


Names of the homologs of the genes in the group in each of these orgs
  G7860   G7859   G7858   EG12494   EG12286   EG12285   
ZMOB264203
YENT393305 YE1976
XORY360094
XORY342109
XORY291331
XFAS405440 XFASM12_1410
XFAS183190
XFAS160492
XCAM487884 XCC-B100_2107
XCAM316273 XCAORF_2071
XCAM314565 XC_2369
XCAM190485 XCC1820
XAXO190486 XAC1840
XAUT78245
WSUC273121
WPIP955
WPIP80849
VFIS312309 VFA0128
VEIS391735 VEIS_2019
UURE95667
UURE95664
UPAR505682
TVOL273116 TVN1450
TTUR377629
TTHE300852
TTHE262724
TSP28240 TRQ2_0654
TROS309801
TPET390874 TPET_0629
TPAL243276
TMAR243274 TM_0283
TLET416591 TLET_1139
TFUS269800
TERY203124
TELO197221
TDEN326298
TDEN292415
TDEN243275 TDE_0856
TCRU317025
TACI273075
SWOL335541 SWOL_0780
STRO369723
STHE322159
STHE299768
STHE264199
SSP94122 SHEWANA3_2065
SSP84588 SYNW1963OR2694
SSP64471
SSP644076
SSP387093
SSP321332
SSP321327
SSP292414
SSP1148
SSP1131
SSED425104
SRUB309807
SPEA398579
SONE211586
SMEL266834 SMC01621
SMED366394 SMED_2157
SLOI323850
SLAC55218
SHAL458817
SGOR29390
SGLO343509 SG1415
SFUM335543 SFUM_1980
SELO269084
SDEN318161
SDEG203122 SDE_0773
SBAL402882
SBAL399599
SAVE227882 SAV6421
SARE391037
SALA317655
SACI56780
RXYL266117 RXYL_1678
RTYP257363
RSPH349102
RSPH349101 RSPH17029_1025
RSPH272943 RSP_2364
RSP357808
RSOL267608
RSAL288705
RRUB269796 RRU_A0359
RRIC452659
RRIC392021
RPRO272947
RPOM246200
RPAL316058
RPAL316057 RPD_1853
RPAL316056
RPAL316055
RPAL258594 RPA4655
RMET266264
RMAS416276
RLEG216596 PRL110150
RFER338969 RFER_3750
RFEL315456
REUT381666
REUT264198
RETL347834
RDEN375451 RD1_3784
RCON272944
RCAS383372
RCAN293613
RBEL391896
RBEL336407
RALB246199 GRAORF_2269
RAKA293614
PTOR263820 PTO1347
PTHE370438
PSYR223283 PSPTO_5062
PSYR205918 PSYR_0464
PSTU379731
PSP56811
PSP312153
PSP296591
PRUM264731 GFRORF0421
PPUT76869
PPUT351746
PPUT160488
PPEN278197 PEPE_0164
PNAP365044
PMOB403833 PMOB_0642
PMEN399739
PMAR93060
PMAR74547 PMT0185
PMAR74546
PMAR59920
PMAR167555
PMAR167546
PMAR167542
PMAR167540
PMAR167539
PMAR146891
PLUT319225
PLUM243265
PINT246198
PING357804
PHAL326442
PGIN242619
PFLU220664 PFL_3344
PFLU216595 PFLU2354
PFLU205922
PENT384676
PDIS435591
PCRY335284
PCAR338963 PCAR_3030
PATL342610
PAST100379
PARC259536
PAER208964 PA1683
PAER208963 PA14_42740
OTSU357244
OCAR504832
OANT439375
NWIN323098
NSP387092
NSP35761 NOCA_0381
NSP103690
NSEN222891
NPHA348780
NOCE323261
NMUL323848
NMEN374833
NMEN272831
NMEN122587
NMEN122586
NHAM323097
NGON242231
NFAR247156 NFA14450
NEUT335283
NEUR228410
NARO279238
MXAN246197
MVAN350058
MTUB419947 MRA_0735
MTUB336982 TBFG_10741
MTHE264732 MOTH_0704
MTBRV RV0727C
MTBCDC MT0752
MSTA339860 MSP_1585
MSP400668 MMWYL1_2551
MSP266779
MSP189918
MSP164757
MSP164756
MSME246196 MSMEG_1714
MPET420662
MMYC272632
MMOB267748
MMAR394221
MMAG342108
MLEP272631
MGIL350054
MGEN243273
MFLO265311
MEXT419610 MEXT_2684
MCAP340047
MBOV410289 BCG_0777C
MBOV233413 MB0748C
MAVI243243 MAV_4439
MART243272
MAQU351348 MAQU_0907
MAER449447
MABS561007
LXYL281090 LXX04680
LWEL386043 LWE2599
LSPH444177
LSAK314315 LSA1857
LREU557436 LREU_0481
LPNE400673
LPNE297246
LPNE297245
LPNE272624
LPLA220668 LP_3555
LMON265669 LMOF2365_2622
LMON169963 LMO2650
LLAC272623
LLAC272622
LJOH257314
LINT363253
LINT267671
LINT189518
LINN272626 LIN2799
LHEL405566
LGAS324831
LDEL390333
LDEL321956
LCHO395495 LCHO_3202
LBOR355277
LBOR355276
LBIF456481
LBIF355278
LACI272621
JSP375286
JSP290400 JANN_1386
ILOI283942
HWAL362976
HSP64091 VNG1201G
HSAL478009 OE2725R
HPYL85963
HPYL357544
HPY
HNEP81032
HMUK485914
HMOD498761 HM1_1725
HMAR272569 PNG7027
HINF374930 CGSHIEE_02035
HINF281310 NTHI0866
HHEP235279
HHAL349124
HCHE349521 HCH_01844
HAUR316274 HAUR_3663
HARS204773
HACI382638
GVIO251221
GURA351605
GSUL243231
GOXY290633
GMET269799
GKAU235909 GK1906
GFOR411154 GFO_0698
GBET391165
FTUL458234
FTUL418136
FTUL401614
FTUL393115
FTUL393011
FTUL351581
FSUC59374
FSP1855
FSP106370
FRANT
FPHI484022
FNUC190304 FN1417
FNOD381764 FNOD_0414
FMAG334413
FJOH376686 FJOH_1120
FALN326424
ESP42895 ENT638_0608
ERUM302409
ERUM254945
ELIT314225
ECHA205920
ECAR218491 ECA1960
ECAN269484
DVUL882
DSP255470
DSP216389
DSHI398580 DSHI_1553
DRED349161 DRED_2062
DRAD243230
DPSY177439
DOLE96561
DNOD246195
DHAF138119 DSY2602
DGEO319795
DETH243164
DDES207559
DARO159087 DARO_3336
CVIO243365
CVES412965
CTRA471473
CTRA471472
CTET212717 CTC_00944
CTEP194439
CSUL444179
CSP501479 CSE45_1189
CSAL290398
CRUT413404
CPSY167879
CPRO264201
CPNE182082
CPNE138677
CPNE115713
CPNE115711
CPHY357809 CPHY_3928
CPER289380 CPR_0490
CPEL335992
CNOV386415 NT01CX_0230
CMUR243161
CKLU431943
CJEJ407148
CJEJ360109
CJEJ354242
CJEJ195099
CJEJ192222
CJEI306537
CJAP155077 CJA_3016
CHYD246194 CHY_1555
CHUT269798
CHOM360107
CGLU196627
CFET360106
CFEL264202
CEFF196164
CDIP257309
CDES477974 DAUD_0650
CCUR360105
CCON360104
CCHL340177
CCAV227941
CBUR434922
CBUR360115
CBUR227377
CBOT536232 CLM_2356
CBOT515621
CBOT498213
CBOT441772
CBOT441771 CLC_2088
CBOT441770 CLB_2083
CBOT36826 CBO2144
CBLO291272
CBLO203907
CAULO
CABO218497
BXEN266265 BXE_B2170
BWEI315730 BCERKBAB4_0328
BVIE269482
BTUR314724
BTRI382640
BTHU412694 BALH_0339
BTHU281309 BT9727_0317
BTHE226186 BT_0353
BTHA271848 BTH_II0975
BSUI470137 BSUIS_B1105
BSUI204722 BR_A1110
BSP376 BRADO4793
BSP36773
BSP107806
BQUI283165
BPSE320373 BURPS668_A2015
BPSE320372 BURPS1710B_B0535
BPSE272560 BPSS1417
BPET94624 BPET2603
BPER257313
BPAR257311
BOVI236
BMEL359391 BAB2_1068
BMEL224914 BMEII0189
BMAL320389 BMA10247_A1859
BMAL320388
BMAL243160 BMA_A0575
BLON206672 BL0273
BJAP224911 BLR5974
BHER314723
BHEN283166
BGAR290434
BFRA295405
BFRA272559
BCIC186490
BCER572264 BCA_0422
BCER315749
BCER226900 BC_0380
BCEN331272
BCEN331271
BCAN483179 BCAN_B1132
BBUR224326
BBRO257310
BBAC360095
BBAC264462
BAPH372461
BAPH198804
BANT592021 BAA_0405
BANT568206 BAMEG_0408
BANT261594 GBAA0348
BANT260799 BAS0333
BAMB398577
BAMB339670
BAFZ390236
BABO262698 BRUAB2_1049
AYEL322098
AVAR240292
AURANTIMONAS
ASP76114
ASP62977
ASP62928
ASP232721
ASAL382245 ASA_2398
APHA212042
AORE350688
ANAE240017 ANA_0444
AMET293826 AMET_3758
AMAR329726
AMAR234826
ALAI441768
AHYD196024 AHA_1901
AFER243159
AEHR187272
ADEH290397
ACRY349163 ACRY_2434
ACEL351607 ACEL_0872
ACAU438753
ABUT367737
ABOR393595
ABAU360910
AAVE397945
AAEO224324 AQ_1979


Organism features enriched in list (features available for 409 out of the 440 orgs in the list)
Feature    Pvalue       Num occurrences in list  Total num occurrences  
Arrangment:Chains 0.00094935292
Arrangment:Clusters 2.938e-8117
Arrangment:Pairs 9.082e-953112
Disease:Gastroenteritis 0.0029733413
Disease:None 0.00976044858
Disease:Pneumonia 0.0001565212
Endospores:No 9.812e-13110211
GC_Content_Range4:40-60 1.556e-6132224
GC_Content_Range4:60-100 1.232e-12133145
GC_Content_Range7:40-50 0.004213671117
GC_Content_Range7:50-60 0.000518061107
GC_Content_Range7:60-70 3.246e-15127134
Genome_Size_Range5:6-10 0.00089144247
Genome_Size_Range9:2-3 0.000685170120
Genome_Size_Range9:3-4 0.00542376377
Genome_Size_Range9:6-8 0.00012543638
Gram_Stain:Gram_Neg 4.293e-8263333
Gram_Stain:Gram_Pos 1.265e-682150
Motility:No 6.779e-782151
Optimal_temp.:- 7.307e-9211257
Optimal_temp.:25-30 0.00104571919
Optimal_temp.:30-35 0.003298417
Optimal_temp.:30-37 0.0000248418
Optimal_temp.:37 0.000823461106
Oxygen_Req:Aerobic 3.695e-11162185
Oxygen_Req:Facultative 4.606e-1895201
Pathogenic_in:Human 1.665e-7122213
Salinity:Non-halophilic 0.000823461106
Shape:Coccus 1.291e-122982
Shape:Irregular_coccus 6.031e-7217
Shape:Rod 0.0012401259347
Shape:Spiral 3.796e-63434
Temp._range:Hyperthermophilic 1.230e-6523



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ORGANISMS ENRICHED FOR GROUP:

Total number of orgs: 29
Effective number of orgs (counting one per cluster within 468 clusters): 14

Organism list
Homologs in each organism in the list
Features enriched in organism list


Follow (ncbi) link, when present, to find the set of organism features for each organism
Org ID  Org Name    Pvalue       # genes in tgt genome found in org  # genes in group found in org  
MPNE272634 ncbi Mycoplasma pneumoniae M129 2.239e-8946
MHYO295358 ncbi Mycoplasma hyopneumoniae 232 3.485e-81016
MHYO262719 ncbi Mycoplasma hyopneumoniae J 3.932e-81036
MHYO262722 ncbi Mycoplasma hyopneumoniae 7448 4.173e-81046
MSYN262723 ncbi Mycoplasma synoviae 53 4.691e-81066
MPUL272635 ncbi Mycoplasma pulmonis UAB CTIP 1.640e-71306
MPEN272633 ncbi Mycoplasma penetrans HF-2 5.398e-71586
TWHI218496 ncbi Tropheryma whipplei TW08/27 0.00029611995
TWHI203267 ncbi Tropheryma whipplei Twist 0.00032722035
SPYO370553 ncbi Streptococcus pyogenes MGAS2096 0.00386036856
SPYO193567 ncbi Streptococcus pyogenes SSI-1 0.00403316906
SPYO198466 ncbi Streptococcus pyogenes MGAS315 0.00447447026
SPYO370551 ncbi Streptococcus pyogenes MGAS9429 0.00459077056
SPYO160490 ncbi Streptococcus pyogenes M1 GAS 0.00483117116
SPYO186103 ncbi Streptococcus pyogenes MGAS8232 0.00483117116
SPYO293653 ncbi Streptococcus pyogenes MGAS5005 0.00499707156
SPYO286636 ncbi Streptococcus pyogenes MGAS10394 0.00512467186
SPYO370554 ncbi Streptococcus pyogenes MGAS10750 0.00547827266
SPYO319701 ncbi Streptococcus pyogenes MGAS6180 0.00552387276
SPYO370552 ncbi Streptococcus pyogenes MGAS10270 0.00580407336
SSUI391295 ncbi Streptococcus suis 05ZYH33 0.00645197466
CMAQ397948 ncbi Caldivirga maquilingensis IC-167 0.00647113695
SPNE170187 ncbi Streptococcus pneumoniae G54 0.00762557676
SSUI391296 ncbi Streptococcus suis 98HAH33 0.00856847826
SPNE487213 ncbi Streptococcus pneumoniae Taiwan19F-14 0.00863467836
SPNE1313 Streptococcus pneumoniae 0.00904067896
SPNE171101 ncbi Streptococcus pneumoniae R6 0.00932007936
SMUT210007 ncbi Streptococcus mutans UA159 0.00939107946
SPNE488221 ncbi Streptococcus pneumoniae 70585 0.00967947986


Names of the homologs of the genes in the group in each of these orgs
  G7860   G7859   G7858   EG12494   EG12286   EG12285   
MPNE272634 MPN498MPN492MPN493MPN495MPN492MPN493
MHYO295358 MHP439MHP440MHP441MHP387MHP440MHP441
MHYO262719 MHJ_0434MHJ_0435MHJ_0436MHJ_0371MHJ_0435MHJ_0436
MHYO262722 MHP7448_0436MHP7448_0437MHP7448_0438MHP7448_0375MHP7448_0437MHP7448_0438
MSYN262723 MS53_0031MS53_0030MS53_0029MS53_0682MS53_0030MS53_0029
MPUL272635 MYPU_5990MYPU_5980MYPU_5970MYPU_5950MYPU_5980MYPU_5970
MPEN272633 MYPE7160MYPE7170MYPE7180MYPE7200MYPE7170MYPE7180
TWHI218496 TW0635TW0636TW0637TW0636TW0637
TWHI203267 TW647TW648TW649TW648TW649
SPYO370553 MGAS2096_SPY0161MGAS2096_SPY0160MGAS2096_SPY0159MGAS2096_SPY0157MGAS2096_SPY0160MGAS2096_SPY0159
SPYO193567 SPS0143SPS0142SPS0141SPS0139SPS0142SPS0141
SPYO198466 SPYM3_0140SPYM3_0139SPYM3_0138SPYM3_0136SPYM3_0139SPYM3_0138
SPYO370551 MGAS9429_SPY0155MGAS9429_SPY0154MGAS9429_SPY0153MGAS9429_SPY0151MGAS9429_SPY0154MGAS9429_SPY0153
SPYO160490 SPY0179SPY0178SPY0177SPY0175SPY0178SPY0177
SPYO186103 SPYM18_0178SPYM18_0177SPYM18_0176SPYM18_0174SPYM18_0177SPYM18_0176
SPYO293653 M5005_SPY0153M5005_SPY0152M5005_SPY0151M5005_SPY0149M5005_SPY0152M5005_SPY0151
SPYO286636 M6_SPY0199M6_SPY0198M6_SPY0197M6_SPY0195M6_SPY0198M6_SPY0197
SPYO370554 MGAS10750_SPY0159MGAS10750_SPY0158MGAS10750_SPY0157MGAS10750_SPY0155MGAS10750_SPY0158MGAS10750_SPY0157
SPYO319701 M28_SPY0151M28_SPY0150M28_SPY0149M28_SPY0147M28_SPY0150M28_SPY0149
SPYO370552 MGAS10270_SPY0155MGAS10270_SPY0154MGAS10270_SPY0153MGAS10270_SPY0151MGAS10270_SPY0154MGAS10270_SPY0153
SSUI391295 SSU05_2058SSU05_2059SSU05_2060SSU05_2062SSU05_2059SSU05_2060
CMAQ397948 CMAQ_1697CMAQ_1496CMAQ_1871CMAQ_1496CMAQ_1871
SPNE170187 SPN20053SPN20051SPN20050SPN20047SPN20051SPN20050
SSUI391296 SSU98_2061SSU98_2062SSU98_2063SSU98_2065SSU98_2062SSU98_2063
SPNE487213 SPT_2028SPT_2029SPT_2030SPT_2032SPT_2029SPT_2030
SPNE1313 SPJ_2039SPJ_2040SPJ_2041SPJ_2043SPJ_2040SPJ_2041
SPNE171101 SPR1844SPR1845SPR1846SPR1848SPR1845SPR1846
SMUT210007 SMU_275SMU_274SMU_273SMU_271SMU_274SMU_273
SPNE488221 SP70585_2119SP70585_2120SP70585_2121SP70585_2123SP70585_2120SP70585_2121


Organism features enriched in list (features available for 28 out of the 29 orgs in the list)
Feature    Pvalue       Num occurrences in list  Total num occurrences  
Arrangment:Chains 2.579e-91892
Disease:Enzootic_pneumonia 0.002228122
Disease:Meningitis 0.002924537
Disease:Whipple's_disease 0.002228122
Disease:Wide_range_of_infections 3.564e-161111
Disease:septicemia_and_arthritis 0.002228122
Endospores:No 1.297e-1328211
GC_Content_Range4:0-40 4.862e-723213
GC_Content_Range7:30-40 0.000207317166
Genome_Size_Range5:0-2 5.066e-922155
Genome_Size_Range9:0-1 0.0000110827
Genome_Size_Range9:1-2 0.000570014128
Gram_Stain:Gram_Neg 0.00034037333
Gram_Stain:Gram_Pos 1.613e-619150
Habitat:Host-associated 0.000011621206
Motility:No 2.270e-1426151
Motility:Yes 6.441e-62267
Optimal_temp.:- 0.00681656257
Optimal_temp.:30-35 4.773e-867
Optimal_temp.:35 0.002924537
Optimal_temp.:37 0.001257012106
Oxygen_Req:Aerobic 0.00155372185
Oxygen_Req:Facultative 1.021e-925201
Pathogenic_in:Human 0.000021221213
Pathogenic_in:No 0.00001361226
Pathogenic_in:Swine 1.781e-755
Salinity:Non-halophilic 2.615e-1020106
Shape:Coccus 3.149e-101882
Shape:Rod 5.377e-83347
Shape:Sphere 8.683e-6719



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ORGANISMS DEPLETED FOR GROUP:




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PHYLOGENETIC PROFILE SIMILARITY WITH KNOWN PATHWAYS:

Pathways or complexes with absolute value of Pearson coefficient with respect to candidate larger than 0.4 are listed below
The candidate is assumed to exist in orgs listed in section List of organisms containing most genes from the group


Pathway or complex  # Orgs containing it  # of those orgs also containing candidate  Pearson Coeff  
PWY0-301 (L-ascorbate degradation, anaerobic)84700.7957
LYXMET-PWY (L-lyxose degradation)87620.6711
GLCMANNANAUT-PWY (superpathway of N-acetylglucosamine, N-acetylmannosamine and N-acetylneuraminate degradation)134690.5719
PWY0-1324 (N-acetylneuraminate and N-acetylmannosamine degradation)135690.5688
PWY-1861 (formaldehyde assimilation II (RuMP Cycle))71470.5447
RUMP-PWY (formaldehyde oxidation I)68450.5314
P441-PWY (superpathway of N-acetylneuraminate degradation)63420.5140
HEXITOLDEGSUPER-PWY (superpathway of hexitol degradation)37290.4704
PWY0-1315 (L-lactaldehyde degradation (anaerobic))45310.4456
PWY-5861 (superpathway of demethylmenaquinone-8 biosynthesis)50320.4299
SORBDEG-PWY (sorbitol degradation II)53330.4284
MANNIDEG-PWY (mannitol degradation I)99470.4243
TREDEGLOW-PWY (trehalose degradation I (low osmolarity))121510.4034
PWY0-1355 (formate to trimethylamine N-oxide electron transfer)31230.4006



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PAIRWISE GENOME CONTEXT SCORE MATRIX:

  G7859   G7858   EG12494   EG12286   EG12285   
G78600.9992340.9990540.998660.9990770.998886
G78590.9992810.9988610.9994010.999099
G78580.9989020.9991140.999733
EG124940.9986030.99866
EG122860.999283
EG12285



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PAIRWISE BLAST SCORES:

  G7860   G7859   G7858   EG12494   EG12286   EG12285   
G78600.0f0-----
G7859-0.0f0--2.3e-83-
G7858--0.0f0--8.7e-52
EG12494---0.0f0--
EG12286-2.3e-83--0.0f0-
EG12285--3.6e-46--0.0f0



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PATHWAYS OR PROTEIN COMPLEX MATCHES IN TARGET ORG:

For each case, all genes involved in the pathway or complex are listed. For each gene we list: a tag indicating whether the gene is part of the candidate list or not, the average and the minimum scores of the gene to the candidate list, the gene name, and its product names.

- PWY0-301 (L-ascorbate degradation, anaerobic) (degree of match pw to cand: 0.750, degree of match cand to pw: 0.500, average score: 0.999)
  Genes in pathway or complex:
   *in cand* 0.9993 0.9989 G7859 (ulaE) G7859-MONOMER (L-xylulose 5-phosphate 3-epimerase)
   *in cand* 0.9993 0.9989 G7858 (ulaD) G7858-MONOMER (3-keto-L-gulonate 6-phosphate decarboxylase)
   *in cand* 0.9992 0.9987 G7860 (ulaF) G7860-MONOMER (L-ribulose 5-phosphate 4-epimerase)
             0.9986 0.9983 G7855 (ulaG) G7855-MONOMER (L-ascorbate 6-phosphate lactonase)
  Genes in candidate but not in this pathway or complex:
   *in cand* 0.9993 0.9987 EG12285 (sgbH) EG12285-MONOMER (3-keto-L-gulonate 6-phosphate decarboxylase)
   *in cand* 0.9992 0.9986 EG12286 (sgbU) EG12286-MONOMER (predicted L-xylulose 5-phosphate 3-epimerase)
   *in cand* 0.9989 0.9986 EG12494 (ulaB) YJFT-MONOMER (UlaB)



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GENOME CONTEXT INFORMATION:

Each row corresponds to a replicon in an organism, each column to a gene in the candidate. The second column indicates whether the organims was included in the list used to compute the genome context scores or not. Some organisms are not included because they are phylogenetically too similar to others already in the list.
The number in the matrix indicate the position of the homolog of the gene in the replicon. All numbers are relative to the smaller one, which is assigned a position of zero. Two columns with the same number indicate that the two genes matched the same gene in that organism.

Genome browser links for gene clusters

The links below opens a genome browser BioCyc page for each cluster of genes in the target genome. These pages shows the central gene of the cluster in the target genome and its best homolog in the reference genomes, for the genomes that contain homologs for at least 75% of the genes in the group. Only one genome per phylogenetic cluster of organisms is shown, to keep the list smaller.

EG12494 G7858 G7859 G7860 (centered at G7859)
EG12285 EG12286 (centered at EG12286)


ORG:REPLICON:CIRC?\GENE  IN REF LIST  G7860   G7859   G7858   EG12494   EG12286   EG12285   
263/623112/623155/62397/623102/623154/623
AAEO224324:0:Tyes0-----
AAUR290340:2:Tyes315113620--0
ABAC204669:0:Tyes02541--2541-
ACEL351607:0:Tyes0-----
ACRY349163:8:Tyes0-----
AFUL224325:0:Tyes--0--0
AHYD196024:0:Tyes0-----
AMET293826:0:Tyes0-----
ANAE240017:0:Tyes0-----
APER272557:0:Tyes731-0--0
APLE416269:0:Tyes650250
APLE434271:0:Tno650250
ASAL382245:5:Tyes0-----
ASP1667:3:Tyes0-3515--3515
BABO262698:0:Tno0-----
BAMY326423:0:Tyes2219-0--0
BANT260799:0:Tno0-----
BANT261594:2:Tno0-----
BANT568206:2:Tyes0-----
BANT592021:2:Tno0-----
BCAN483179:0:Tno0-----
BCER226900:1:Tyes0-----
BCER288681:0:Tno0--2364--
BCER405917:1:Tyes0--2392--
BCER572264:1:Tno0-----
BCLA66692:0:Tyes03070298455130702984
BHAL272558:0:Tyes1706--0--
BJAP224911:0:Fyes-0----
BLIC279010:0:Tyes222-0--0
BLON206672:0:Tyes0-----
BMAL243160:0:Tno0-----
BMAL320389:0:Tyes0-----
BMEL224914:0:Tno0-----
BMEL359391:0:Tno0-----
BPET94624:0:Tyes0-----
BPSE272560:0:Tyes0-----
BPSE320372:0:Tno0-----
BPSE320373:0:Tno0-----
BPUM315750:0:Tyes568-5730-573
BSP376:0:Tyes0-----
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