CANDIDATE ID: 379

CANDIDATE ID: 379

NUMBER OF GENES: 6
AVERAGE SCORE:    9.9924353e-1 (range=[0.0,1.0])
AVERAGE MINIMUM BLAST P-VAL:    3.3333334e-1

Gene List
List of organisms containing most genes from the group
    Phylogenetic tree highlighting these organisms (opens new page)
List of organisms containing very few or no genes from the group
List of organisms enriched for group
List of organisms depleted for group
Phylogenetic profile similarity with known pathways
Pairwise genome context scores
Pairwise Blast scores
Pathway or protein complex matches in target organism
Genome context matrix
    Genes and their orthologs in genome browser BioCyc pages



GENE LIST:

- G7107 (wza) (b2062)
   Products of gene:
     - G7107-MONOMER (lipoprotein required for capsular polysaccharide translocation through the outer membrane)
     - CPLX0-7529 (capsular polysaccharide export apparatus)

- G7105 (wzc) (b2060)
   Products of gene:
     - G7105-MONOMER (tyrosine kinase involved in colanic acid biosynthesis)
       Reactions:
        ATP + a protein L-tyrosine  =  a protein-L-tyrosine phosphate + ADP
     - CPLX0-7529 (capsular polysaccharide export apparatus)

- G7098 (wcaJ) (b2047)
   Products of gene:
     - G7098-MONOMER (predicted colanic acid biosynthsis UDP-glucose lipid carrier transferase)

- G7097 (wzxC) (b2046)
   Products of gene:
     - G7097-MONOMER (WzxC)

- G6504 (gfcE) (b0983)
   Products of gene:
     - G6504-MONOMER (predicted exopolysaccharide export protein)

- EG11826 (etk) (b0981)
   Products of gene:
     - EG11826-MONOMER (autophosphorylating protein tyrosine kinase)
       Reactions:
        ATP + a protein L-tyrosine  ->  ADP + a protein-L-tyrosine phosphate



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ORGANISMS CONTAINING AT LEAST 5 GENES FROM THE GROUP:

Total number of orgs: 140
Effective number of orgs (counting one per cluster within 468 clusters): 104

Organism list
Homologs in each organism in the list
Features enriched in organism list


Follow (ncbi) link, when present, to find the set of organism features for each organism
Org ID  Org Name  # genes in group found in org  
VVUL216895 ncbi Vibrio vulnificus CMCP65
VVUL196600 ncbi Vibrio vulnificus YJ0165
VPAR223926 ncbi Vibrio parahaemolyticus RIMD 22106336
VFIS312309 ncbi Vibrio fischeri ES1145
VCHO345073 ncbi Vibrio cholerae O3955
VCHO ncbi Vibrio cholerae O1 biovar El Tor str. N169616
TSP28240 Thermotoga sp.5
TERY203124 ncbi Trichodesmium erythraeum IMS1015
TDEN292415 ncbi Thiobacillus denitrificans ATCC 252596
STYP99287 ncbi Salmonella enterica enterica serovar Typhimurium str. LT26
SSP387093 ncbi Sulfurovum sp. NBC37-15
SPRO399741 ncbi Serratia proteamaculans 5686
SMEL266834 ncbi Sinorhizobium meliloti 10215
SHIGELLA ncbi Shigella flexneri 2a str. 2457T6
SGLO343509 ncbi Sodalis glossinidius morsitans6
SFUM335543 ncbi Syntrophobacter fumaroxidans MPOB5
SFLE373384 ncbi Shigella flexneri 5 str. 84016
SFLE198214 ncbi Shigella flexneri 2a str. 3016
SENT454169 ncbi Salmonella enterica enterica serovar Heidelberg str. SL4766
SENT321314 ncbi Salmonella enterica enterica serovar Choleraesuis str. SC-B676
SENT295319 ncbi Salmonella enterica enterica serovar Paratyphi A str. ATCC 91505
SENT220341 ncbi Salmonella enterica enterica serovar Typhi str. CT186
SENT209261 ncbi Salmonella enterica enterica serovar Typhi str. Ty26
SBOY300268 ncbi Shigella boydii Sb2276
SALA317655 ncbi Sphingopyxis alaskensis RB22566
RSPH349102 ncbi Rhodobacter sphaeroides ATCC 170255
RSPH349101 ncbi Rhodobacter sphaeroides ATCC 170295
RSPH272943 ncbi Rhodobacter sphaeroides 2.4.15
RRUB269796 ncbi Rhodospirillum rubrum ATCC 111706
RPAL258594 ncbi Rhodopseudomonas palustris CGA0096
RMET266264 ncbi Ralstonia metallidurans CH346
RLEG216596 ncbi Rhizobium leguminosarum bv. viciae 38415
RFER338969 ncbi Rhodoferax ferrireducens T1185
REUT264198 ncbi Ralstonia eutropha JMP1346
RDEN375451 ncbi Roseobacter denitrificans OCh 1145
PSYR223283 ncbi Pseudomonas syringae pv. tomato str. DC30005
PSYR205918 ncbi Pseudomonas syringae pv. syringae B728a5
PSTU379731 ncbi Pseudomonas stutzeri A15015
PSP296591 ncbi Polaromonas sp. JS6666
PNAP365044 ncbi Polaromonas naphthalenivorans CJ26
PMOB403833 ncbi Petrotoga mobilis SJ955
PLUT319225 ncbi Chlorobium luteolum DSM 2735
PHAL326442 ncbi Pseudoalteromonas haloplanktis TAC1255
PGIN242619 ncbi Porphyromonas gingivalis W835
PFLU216595 ncbi Pseudomonas fluorescens SBW255
PFLU205922 ncbi Pseudomonas fluorescens Pf0-16
PDIS435591 ncbi Parabacteroides distasonis ATCC 85036
PATL342610 ncbi Pseudoalteromonas atlantica T6c6
PARC259536 ncbi Psychrobacter arcticus 273-45
NSP103690 ncbi Nostoc sp. PCC 71206
NOCE323261 ncbi Nitrosococcus oceani ATCC 197076
NMUL323848 ncbi Nitrosospira multiformis ATCC 251966
NHAM323097 ncbi Nitrobacter hamburgensis X145
NEUT335283 ncbi Nitrosomonas eutropha C916
NEUR228410 ncbi Nitrosomonas europaea ATCC 197186
NARO279238 ncbi Novosphingobium aromaticivorans DSM 124446
MXAN246197 ncbi Myxococcus xanthus DK 16226
MSUC221988 ncbi Mannheimia succiniciproducens MBEL55E5
MSP266779 ncbi Chelativorans sp. BNC16
MPET420662 ncbi Methylibium petroleiphilum PM16
MLOT266835 ncbi Mesorhizobium loti MAFF3030995
MFLA265072 ncbi Methylobacillus flagellatus KT5
MCAP243233 ncbi Methylococcus capsulatus Bath5
MAER449447 ncbi Microcystis aeruginosa NIES-8436
LCHO395495 ncbi Leptothrix cholodnii SP-66
KPNE272620 ncbi Klebsiella pneumoniae pneumoniae MGH 785785
JSP375286 ncbi Janthinobacterium sp. Marseille6
HNEP81032 Hyphomonas neptunium5
HCHE349521 ncbi Hahella chejuensis KCTC 23966
HARS204773 ncbi Herminiimonas arsenicoxydans6
GVIO251221 ncbi Gloeobacter violaceus PCC 74216
GURA351605 ncbi Geobacter uraniireducens Rf46
GSUL243231 ncbi Geobacter sulfurreducens PCA5
GMET269799 ncbi Geobacter metallireducens GS-156
FSUC59374 ncbi Fibrobacter succinogenes succinogenes S856
FJOH376686 ncbi Flavobacterium johnsoniae UW1016
ESP42895 Enterobacter sp.6
ELIT314225 ncbi Erythrobacter litoralis HTCC25946
EFER585054 ncbi Escherichia fergusonii ATCC 354696
ECOO157 ncbi Escherichia coli O157:H7 EDL9336
ECOL83334 Escherichia coli O157:H76
ECOL585397 ncbi Escherichia coli ED1a6
ECOL585057 ncbi Escherichia coli IAI396
ECOL585056 ncbi Escherichia coli UMN0266
ECOL585055 ncbi Escherichia coli 559896
ECOL585035 ncbi Escherichia coli S886
ECOL585034 ncbi Escherichia coli IAI16
ECOL481805 ncbi Escherichia coli ATCC 87396
ECOL469008 ncbi Escherichia coli BL21(DE3)6
ECOL439855 ncbi Escherichia coli SMS-3-56
ECOL413997 ncbi Escherichia coli B str. REL6066
ECOL409438 ncbi Escherichia coli SE116
ECOL405955 ncbi Escherichia coli APEC O16
ECOL364106 ncbi Escherichia coli UTI896
ECOL362663 ncbi Escherichia coli 5366
ECOL331111 ncbi Escherichia coli E24377A6
ECOL316407 ncbi Escherichia coli K-12 substr. W31106
ECOL199310 ncbi Escherichia coli CFT0736
ECAR218491 ncbi Pectobacterium atrosepticum SCRI10435
DVUL882 ncbi Desulfovibrio vulgaris Hildenborough5
DDES207559 ncbi Desulfovibrio desulfuricans desulfuricans G205
CSP78 Caulobacter sp.5
CSP501479 Citreicella sp. SE455
CSAL290398 ncbi Chromohalobacter salexigens DSM 30436
CPSY167879 ncbi Colwellia psychrerythraea 34H5
CJAP155077 Cellvibrio japonicus5
CHUT269798 ncbi Cytophaga hutchinsonii ATCC 334065
CCHL340177 ncbi Chlorobium chlorochromatii CaD35
CAULO ncbi Caulobacter crescentus CB155
BXEN266265 ncbi Burkholderia xenovorans LB4006
BVIE269482 ncbi Burkholderia vietnamiensis G46
BTHE226186 ncbi Bacteroides thetaiotaomicron VPI-54826
BTHA271848 ncbi Burkholderia thailandensis E2645
BSP376 Bradyrhizobium sp.6
BSP36773 Burkholderia sp.5
BPSE320373 ncbi Burkholderia pseudomallei 6685
BPSE320372 ncbi Burkholderia pseudomallei 1710b5
BPSE272560 ncbi Burkholderia pseudomallei K962435
BMAL320389 ncbi Burkholderia mallei NCTC 102475
BMAL320388 ncbi Burkholderia mallei SAVP15
BMAL243160 ncbi Burkholderia mallei ATCC 233445
BJAP224911 ncbi Bradyrhizobium japonicum USDA 1106
BFRA295405 ncbi Bacteroides fragilis YCH466
BFRA272559 ncbi Bacteroides fragilis NCTC 93436
BCEN331272 ncbi Burkholderia cenocepacia HI24245
BCEN331271 ncbi Burkholderia cenocepacia AU 10545
BAMB398577 ncbi Burkholderia ambifaria MC40-65
BAMB339670 ncbi Burkholderia ambifaria AMMD5
AVAR240292 ncbi Anabaena variabilis ATCC 294136
ASP76114 ncbi Aromatoleum aromaticum EbN16
ASP62977 ncbi Acinetobacter sp. ADP15
ASP62928 ncbi Azoarcus sp. BH726
AMAR329726 ncbi Acaryochloris marina MBIC110176
AFER243159 ncbi Acidithiobacillus ferrooxidans ATCC 232706
AEHR187272 ncbi Alkalilimnicola ehrlichii MLHE-15
ADEH290397 ncbi Anaeromyxobacter dehalogenans 2CP-C5
ACRY349163 ncbi Acidiphilium cryptum JF-56
ABOR393595 ncbi Alcanivorax borkumensis SK25
ABAU360910 ncbi Bordetella avium 197N5
ABAC204669 ncbi Candidatus Koribacter versatilis Ellin3455


Names of the homologs of the genes in the group in each of these orgs
  G7107   G7105   G7098   G7097   G6504   EG11826   
VVUL216895 VV1_0786VV1_0781VV2_1582VV1_0786VV1_0781
VVUL196600 VV0337VV0340VVA0395VV0337VV0340
VPAR223926 VPA1602VPA1604VPA1403VP1465VPA1602VPA1604
VFIS312309 VF0162VF0165VF0352VF0162VF0165
VCHO345073 VC0395_A0460VC0395_A0461VC0395_A0458VC0395_A0460VC0395_A0461
VCHO VC0936VC0937VC0934VC0921VC0936VC0937
TSP28240 TRQ2_0289TRQ2_0295TRQ2_0310TRQ2_0289TRQ2_0284
TERY203124 TERY_1924TERY_1925TERY_1523TERY_1924TERY_1925
TDEN292415 TBD_1795TBD_1793TBD_1801TBD_0311TBD_1795TBD_1793
STYP99287 STM2118STM2116STM2103STM2102STM2118STM2116
SSP387093 SUN_1740SUN_1559SUN_1547SUN_1740SUN_1559
SPRO399741 SPRO_2894SPRO_2893SPRO_1594SPRO_1591SPRO_1583SPRO_2893
SMEL266834 SMC02274SMC01792SMB21050SMC02274SMB20961
SHIGELLA WZAS2248WCAJWZXCWZAS2248
SGLO343509 SG0978SG0980SG0986SG0976SG0978SG0980
SFUM335543 SFUM_0530SFUM_3321SFUM_0959SFUM_0530SFUM_3321
SFLE373384 SFV_0992SFV_0990SFV_2104SFV_2103SFV_0992SFV_0990
SFLE198214 AAN43663.1AAN43661.1AAN43649.1AAN43648.1AAN43663.1AAN43661.1
SENT454169 SEHA_C2344SEHA_C2342SEHA_C2329SEHA_C2328SEHA_C2344SEHA_C2342
SENT321314 SCH_2119SCH_2117SCH_2104SCH_2103SCH_2119SCH_2117
SENT295319 SPA0748SPA0750SPA0764SPA0748SPA0750
SENT220341 STY2331STY2329STY2315STY2314STY2331STY2329
SENT209261 T0754T0756T0769T0770T0754T0756
SBOY300268 SBO_2247SBO_2249SBO_0874SBO_0873SBO_2247SBO_2249
SALA317655 SALA_1928SALA_1583SALA_1586SALA_2706SALA_1928SALA_1583
RSPH349102 RSPH17025_4093RSPH17025_4095RSPH17025_3247RSPH17025_4093RSPH17025_4095
RSPH349101 RSPH17029_2418RSPH17029_3692RSPH17029_3453RSPH17029_2418RSPH17029_3692
RSPH272943 RSP_4086RSP_4084RSP_3719RSP_4086RSP_4084
RRUB269796 RRU_A3117RRU_A1490RRU_A3721RRU_A3346RRU_A3117RRU_A1490
RPAL258594 RPA3360RPA3355RPA2750RPA3348RPA3360RPA3355
RMET266264 RMET_5851RMET_5849RMET_5835RMET_2731RMET_5851RMET_5849
RLEG216596 RL3664RL3662RL1661RL3646RL3664
RFER338969 RFER_0658RFER_0660RFER_0702RFER_0691RFER_0658
REUT264198 REUT_B5370REUT_B5368REUT_A0743REUT_B5347REUT_B5370REUT_B5368
RDEN375451 RD1_B0026RD1_3835RD1_1699RD1_1579RD1_3835
PSYR223283 PSPTO_3450PSPTO_3443PSPTO_3449PSPTO_3450PSPTO_3443
PSYR205918 PSYR_3232PSYR_3225PSYR_3231PSYR_3232PSYR_3225
PSTU379731 PST_2501PST_1759PST_2491PST_2501PST_2493
PSP296591 BPRO_1877BPRO_1879BPRO_1875BPRO_1890BPRO_1877BPRO_1879
PNAP365044 PNAP_3196PNAP_3132PNAP_3176PNAP_3487PNAP_3196PNAP_3194
PMOB403833 PMOB_1613PMOB_0944PMOB_1786PMOB_1613PMOB_0944
PLUT319225 PLUT_1369PLUT_0764PLUT_0765PLUT_1369PLUT_0764
PHAL326442 PSHAA0398PSHAA1780PSHAA1783PSHAA0398PSHAA1780
PGIN242619 PG_0437PG_0436PG_1964PG_0437PG_0436
PFLU216595 PFLU3662PFLU3677PFLU2082PFLU3662PFLU3677
PFLU205922 PFL_3833PFL_3844PFL_3829PFL_2823PFL_3833PFL_3844
PDIS435591 BDI_1473BDI_0018BDI_0654BDI_1353BDI_1146BDI_2223
PATL342610 PATL_1170PATL_4000PATL_1070PATL_1187PATL_1170PATL_1073
PARC259536 PSYC_0647PSYC_0649PSYC_0671PSYC_0647PSYC_0649
NSP103690 ALL4388ALR2856ALL2854ALR3072ALL4388ALR2856
NOCE323261 NOC_1985NOC_1497NOC_1508NOC_1942NOC_1985NOC_1497
NMUL323848 NMUL_A0242NMUL_A0244NMUL_A0239NMUL_A0292NMUL_A0242NMUL_A0244
NHAM323097 NHAM_3057NHAM_2466NHAM_3039NHAM_3057NHAM_3056
NEUT335283 NEUT_2119NEUT_2120NEUT_1762NEUT_0909NEUT_2119NEUT_2120
NEUR228410 NE2279NE2280NE0378NE2022NE2279NE2280
NARO279238 SARO_0753SARO_3224SARO_3218SARO_2629SARO_0753SARO_3224
MXAN246197 MXAN_1915MXAN_1025MXAN_2922MXAN_1035MXAN_1915MXAN_1025
MSUC221988 MS1487MS1486MS1492MS1487MS1486
MSP266779 MESO_2754MESO_0660MESO_1154MESO_0649MESO_2754MESO_0660
MPET420662 MPE_A2734MPE_A0736MPE_A1065MPE_A0730MPE_A2734MPE_A0736
MLOT266835 MLL8437MLL8435MLL5270MLL8437MLR5276
MFLA265072 MFLA_2026MFLA_2024MFLA_2028MFLA_2026MFLA_2024
MCAP243233 MCA_0148MCA_1178MCA_0147MCA_0148MCA_1178
MAER449447 MAE_41410MAE_32940MAE_26050MAE_41540MAE_41410MAE_32940
LCHO395495 LCHO_3509LCHO_2365LCHO_2715LCHO_2347LCHO_2367LCHO_2365
KPNE272620 GKPORF_B1796GKPORF_B1795GKPORF_B1784GKPORF_B1796GKPORF_B1795
JSP375286 MMA_0632MMA_0634MMA_0631MMA_0648MMA_0632MMA_0634
HNEP81032 HNE_2650HNE_1194HNE_1188HNE_2650HNE_1194
HCHE349521 HCH_03428HCH_03426HCH_04677HCH_04692HCH_03428HCH_03426
HARS204773 HEAR0714HEAR0716HEAR0713HEAR0730HEAR0714HEAR0716
GVIO251221 GLR3784GLR4310GLL3791GLL3709GLR3784GLR3785
GURA351605 GURA_1669GURA_1670GURA_3177GURA_1963GURA_1669GURA_1670
GSUL243231 GSU_1985GSU_1983GSU_1986GSU_1985GSU_1983
GMET269799 GMET_2030GMET_2028GMET_2031GMET_2012GMET_2030GMET_2028
FSUC59374 FSU1216FSU1424FSU2799FSU3241FSU1216FSU1424
FJOH376686 FJOH_0353FJOH_0360FJOH_4994FJOH_2240FJOH_0353FJOH_0360
ESP42895 ENT638_2676ENT638_2715ENT638_2661ENT638_2660ENT638_2717ENT638_2715
ELIT314225 ELI_06860ELI_12195ELI_12255ELI_00250ELI_06860ELI_12195
EFER585054 EFER_2146EFER_2144EFER_2131EFER_2130EFER_2146EFER_2144
ECOO157 WZAZ3224WCAJWZXCWZAZ3224
ECOL83334 ECS1139ECS1137ECS2852ECS2851ECS1139ECS1137
ECOL585397 ECED1_2408ECED1_2406ECED1_2393ECED1_2392ECED1_2408ECED1_2406
ECOL585057 ECIAI39_0953ECIAI39_0955ECIAI39_0968ECIAI39_0969ECIAI39_0953ECIAI39_0955
ECOL585056 ECUMN_2398ECUMN_2396ECUMN_2383ECUMN_2382ECUMN_2398ECUMN_2396
ECOL585055 EC55989_2318EC55989_2316EC55989_2303EC55989_2302EC55989_2318EC55989_2316
ECOL585035 ECS88_2159ECS88_2157ECS88_2144ECS88_2143ECS88_2159ECS88_2157
ECOL585034 ECIAI1_2138ECIAI1_2136ECIAI1_2122ECIAI1_2121ECIAI1_2138ECIAI1_2136
ECOL481805 ECOLC_2613ECOLC_2615ECOLC_1594ECOLC_1595ECOLC_2613ECOLC_2615
ECOL469008 ECBD_1593ECBD_1595ECBD_1608ECBD_1609ECBD_1593ECBD_1595
ECOL439855 ECSMS35_1000ECSMS35_1002ECSMS35_1015ECSMS35_1016ECSMS35_1000ECSMS35_1002
ECOL413997 ECB_01968ECB_01966ECB_01953ECB_01952ECB_01968ECB_01966
ECOL409438 ECSE_2336ECSE_2334ECSE_2321ECSE_2320ECSE_2336ECSE_2334
ECOL405955 APECO1_1152APECO1_1150APECO1_1137APECO1_1136APECO1_1152APECO1_1150
ECOL364106 UTI89_C2336UTI89_C2334UTI89_C2320UTI89_C2319UTI89_C2336UTI89_C2334
ECOL362663 ECP_2102ECP_2100ECP_2087ECP_2086ECP_2102ECP_2100
ECOL331111 ECE24377A_1099ECE24377A_1097ECE24377A_2339ECE24377A_2338ECE24377A_1099ECE24377A_1097
ECOL316407 ECK2056:JW2047:B2062ECK2054:JW2045:B2060ECK2041:JW2032:B2047ECK2040:JW2031:B2046ECK2056:JW2047:B2062ECK2054:JW2045:B2060
ECOL199310 C2589C2586C2572C2571C2589C2586
ECAR218491 ECA1417ECA1419ECA0499ECA1417ECA1419
DVUL882 DVU_A0038DVU_A0040DVU_A0037DVU_A0038DVU_A0040
DDES207559 DDE_0830DDE_0832DDE_0829DDE_0830DDE_0832
CSP78 CAUL_2079CAUL_4816CAUL_1539CAUL_2079CAUL_4816
CSP501479 CSE45_0334CSE45_5507CSE45_3325CSE45_5506CSE45_5507
CSAL290398 CSAL_1712CSAL_1713CSAL_1693CSAL_1685CSAL_1712CSAL_1713
CPSY167879 CPS_0578CPS_0580CPS_3244CPS_0578CPS_0580
CJAP155077 CJA_0624CJA_0622CJA_0610CJA_0615CJA_3424
CHUT269798 CHU_2882CHU_0880CHU_1927CHU_2882CHU_0880
CCHL340177 CAG_0648CAG_0649CAG_0665CAG_0648CAG_0649
CAULO CC0169CC0164CC2425CC0169CC0164
BXEN266265 BXE_B2257BXE_B1726BXE_B0510BXE_C1083BXE_B1728BXE_B1726
BVIE269482 BCEP1808_4204BCEP1808_6524BCEP1808_4201BCEP1808_6521BCEP1808_4204BCEP1808_6524
BTHE226186 BT_1356BT_0482BT_0480BT_1652BT_1654BT_0482
BTHA271848 BTH_II0546BTH_I1354BTH_II0543BTH_II0546BTH_II0547
BSP376 BRADO4841BRADO4812BRADO4231BRADO4827BRADO4841BRADO7056
BSP36773 BCEP18194_B1817BCEP18194_C7398BCEP18194_B2276BCEP18194_B2273BCEP18194_B2272
BPSE320373 BURPS668_A2620BURPS668_3220BURPS668_A2623BURPS668_A2620BURPS668_3220
BPSE320372 BURPS1710B_B1074BURPS1710B_A3542BURPS1710B_B1077BURPS1710B_B1074BURPS1710B_B1073
BPSE272560 BPSS1831BPSL2778BPSS1834BPSS1831BPSL2778
BMAL320389 BMA10247_2515BMA10247_A0101BMA10247_2514BMA10247_2515BMA10247_A0101
BMAL320388 BMASAVP1_A2893BMASAVP1_1245BMASAVP1_A2892BMASAVP1_A2893BMASAVP1_1245
BMAL243160 BMA_0047BMA_A0085BMA_0046BMA_0047BMA_A0085
BJAP224911 BLL2379BLL2362BLR2358BLL6303BLL2379BLL2362
BFRA295405 BF1932BF2769BF2767BF2582BF1222BF2769
BFRA272559 BF2000BF2784BF2782BF0737BF1187BF2784
BCEN331272 BCEN2424_3823BCEN2424_3824BCEN2424_3820BCEN2424_3823BCEN2424_3824
BCEN331271 BCEN_4540BCEN_4539BCEN_4543BCEN_4540BCEN_4539
BAMB398577 BAMMC406_3726BAMMC406_3694BAMMC406_3723BAMMC406_3726BAMMC406_5907
BAMB339670 BAMB_5549BAMB_6175BAMB_5546BAMB_5549BAMB_5550
AVAR240292 AVA_3287AVA_1045AVA_1046AVA_0839AVA_3287AVA_1045
ASP76114 EBA4247EBA6797EBA1531EBA4295EBA4247EBA6797
ASP62977 ACIAD0070ACIAD0068ACIAD0098ACIAD0070ACIAD0068
ASP62928 AZO3283AZO2240AZO2246AZO3256AZO2242AZO2240
AMAR329726 AM1_A0080AM1_0407AM1_5478AM1_1909AM1_2021AM1_0407
AFER243159 AFE_1742AFE_1741AFE_1711AFE_2948AFE_1742AFE_1741
AEHR187272 MLG_0799MLG_0800MLG_0159MLG_0799MLG_0800
ADEH290397 ADEH_4275ADEH_4274ADEH_2455ADEH_4275ADEH_4274
ACRY349163 ACRY_2963ACRY_1523ACRY_0073ACRY_2291ACRY_2963ACRY_1523
ABOR393595 ABO_0905ABO_0907ABO_0943ABO_0905ABO_0907
ABAU360910 BAV2639BAV2650BAV2636BAV2639BAV2650
ABAC204669 ACID345_0834ACID345_0835ACID345_2726ACID345_3311ACID345_0835


Organism features enriched in list (features available for 131 out of the 140 orgs in the list)
Feature    Pvalue       Num occurrences in list  Total num occurrences  
Arrangment:Chains 0.0000369792
Disease:Gastroenteritis 0.0021085813
Endospores:No 0.000886933211
Endospores:Yes 0.0000972253
GC_Content_Range4:0-40 1.005e-216213
GC_Content_Range4:40-60 9.256e-774224
GC_Content_Range4:60-100 0.000047650145
GC_Content_Range7:30-40 1.404e-146166
GC_Content_Range7:50-60 6.991e-1151107
GC_Content_Range7:60-70 8.901e-649134
Genome_Size_Range5:2-4 0.000836230197
Genome_Size_Range5:4-6 3.526e-1173184
Genome_Size_Range5:6-10 7.904e-92847
Genome_Size_Range9:2-3 0.000056412120
Genome_Size_Range9:4-5 5.808e-74196
Genome_Size_Range9:5-6 0.00053083288
Genome_Size_Range9:6-8 1.447e-72338
Gram_Stain:Gram_Neg 1.618e-17115333
Gram_Stain:Gram_Pos 1.621e-181150
Habitat:Host-associated 0.001707933206
Habitat:Multiple 0.003256152178
Motility:No 0.000206519151
Motility:Yes 3.683e-1091267
Optimal_temp.:20-30 0.000644867
Optimal_temp.:30 0.0064805815
Oxygen_Req:Facultative 0.004121957201
Shape:Coccus 3.465e-6482
Shape:Rod 7.945e-10107347
Shape:Spiral 0.0013861134
Temp._range:Mesophilic 0.0082543115473
Temp._range:Thermophilic 0.0057440235



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ORGANISMS CONTAINING AT MOST 1 GENES FROM THE GROUP:

Total number of orgs: 271
Effective number of orgs (counting one per cluster within 468 clusters): 206

Organism list
Homologs in each organism in the list
Features enriched in organism list


Follow (ncbi) link, when present, to find the set of organism features for each organism
Org ID  Org Name  # genes in group found in org  
YPSE349747 ncbi Yersinia pseudotuberculosis IP 317580
YPSE273123 ncbi Yersinia pseudotuberculosis IP 329530
YPES386656 ncbi Yersinia pestis Pestoides F0
YPES377628 ncbi Yersinia pestis Nepal5160
YPES360102 ncbi Yersinia pestis Antiqua0
YPES349746 ncbi Yersinia pestis Angola0
YPES214092 ncbi Yersinia pestis CO920
YPES187410 ncbi Yersinia pestis KIM 100
YENT393305 ncbi Yersinia enterocolitica enterocolitica 80810
WSUC273121 ncbi Wolinella succinogenes DSM 17400
WPIP955 Wolbachia pipientis0
WPIP80849 Wolbachia endosymbiont of Brugia malayi0
VEIS391735 ncbi Verminephrobacter eiseniae EF01-21
UURE95667 Ureaplasma urealyticum serovar 130
UURE95664 Ureaplasma urealyticum serovar 100
UPAR505682 ncbi Ureaplasma parvum serovar 3 str. ATCC 278150
UMET351160 ncbi uncultured methanogenic archaeon RC-I1
TWHI218496 ncbi Tropheryma whipplei TW08/270
TWHI203267 ncbi Tropheryma whipplei Twist0
TVOL273116 ncbi Thermoplasma volcanium GSS11
TTHE300852 ncbi Thermus thermophilus HB80
TTHE262724 ncbi Thermus thermophilus HB270
TROS309801 ncbi Thermomicrobium roseum DSM 51591
TPEN368408 ncbi Thermofilum pendens Hrk 51
TPAL243276 ncbi Treponema pallidum pallidum Nichols0
TKOD69014 ncbi Thermococcus kodakarensis KOD11
TFUS269800 ncbi Thermobifida fusca YX0
TDEN326298 ncbi Sulfurimonas denitrificans DSM 12510
TDEN243275 ncbi Treponema denticola ATCC 354050
TCRU317025 ncbi Thiomicrospira crunogena XCL-21
TACI273075 ncbi Thermoplasma acidophilum DSM 17280
SWOL335541 ncbi Syntrophomonas wolfei wolfei Goettingen0
STRO369723 ncbi Salinispora tropica CNB-4401
STOK273063 ncbi Sulfolobus tokodaii 70
STHE292459 ncbi Symbiobacterium thermophilum IAM 148631
SSP321332 ncbi Synechococcus sp. JA-2-3Ba(2-13)1
SSP1131 Synechococcus sp. CC96050
SSOL273057 ncbi Sulfolobus solfataricus P20
SRUB309807 ncbi Salinibacter ruber DSM 138551
SPYO370554 ncbi Streptococcus pyogenes MGAS107500
SPYO370553 ncbi Streptococcus pyogenes MGAS20960
SPYO370552 ncbi Streptococcus pyogenes MGAS102700
SPYO370551 ncbi Streptococcus pyogenes MGAS94290
SPYO319701 ncbi Streptococcus pyogenes MGAS61800
SPYO293653 ncbi Streptococcus pyogenes MGAS50050
SPYO286636 ncbi Streptococcus pyogenes MGAS103940
SPYO198466 ncbi Streptococcus pyogenes MGAS3150
SPYO193567 ncbi Streptococcus pyogenes SSI-10
SPYO186103 ncbi Streptococcus pyogenes MGAS82320
SPYO160490 ncbi Streptococcus pyogenes M1 GAS0
SPNE171101 ncbi Streptococcus pneumoniae R60
SMUT210007 ncbi Streptococcus mutans UA1590
SMAR399550 ncbi Staphylothermus marinus F10
SERY405948 ncbi Saccharopolyspora erythraea NRRL 23381
SEPI176280 ncbi Staphylococcus epidermidis ATCC 122280
SEPI176279 ncbi Staphylococcus epidermidis RP62A0
SELO269084 ncbi Synechococcus elongatus PCC 63011
SCO ncbi Streptomyces coelicolor A3(2)1
SAVE227882 ncbi Streptomyces avermitilis MA-46801
SARE391037 ncbi Salinispora arenicola CNS-2051
SACI330779 ncbi Sulfolobus acidocaldarius DSM 6390
RTYP257363 ncbi Rickettsia typhi Wilmington0
RSAL288705 ncbi Renibacterium salmoninarum ATCC 332090
RRIC452659 ncbi Rickettsia rickettsii Iowa0
RRIC392021 ncbi Rickettsia rickettsii Sheila Smith0
RPRO272947 ncbi Rickettsia prowazekii Madrid E0
RPAL316056 ncbi Rhodopseudomonas palustris BisB181
RMAS416276 ncbi Rickettsia massiliae MTU50
RFEL315456 ncbi Rickettsia felis URRWXCal20
RCON272944 ncbi Rickettsia conorii Malish 70
RCAN293613 ncbi Rickettsia canadensis McKiel0
RBEL391896 ncbi Rickettsia bellii OSU 85-3890
RBEL336407 ncbi Rickettsia bellii RML369-C0
RAKA293614 ncbi Rickettsia akari Hartford0
PTOR263820 ncbi Picrophilus torridus DSM 97900
PSP312153 ncbi Polynucleobacter necessarius asymbioticus QLW-P1DMWA-11
PMAR93060 ncbi Prochlorococcus marinus MIT 92150
PMAR74547 ncbi Prochlorococcus marinus MIT 93131
PMAR74546 ncbi Prochlorococcus marinus MIT 93120
PMAR59920 ncbi Prochlorococcus marinus NATL2A0
PMAR167555 ncbi Prochlorococcus marinus NATL1A0
PMAR167546 ncbi Prochlorococcus marinus MIT 93010
PMAR167539 ncbi Prochlorococcus marinus marinus CCMP13750
PMAR146891 ncbi Prochlorococcus marinus AS96010
PISL384616 ncbi Pyrobaculum islandicum DSM 41840
PHOR70601 ncbi Pyrococcus horikoshii OT31
PFUR186497 ncbi Pyrococcus furiosus DSM 36381
PAST100379 Onion yellows phytoplasma0
PARS340102 ncbi Pyrobaculum arsenaticum DSM 135140
PAER208963 ncbi Pseudomonas aeruginosa UCBPP-PA140
PAER178306 ncbi Pyrobaculum aerophilum IM20
PACN267747 ncbi Propionibacterium acnes KPA1712021
PABY272844 ncbi Pyrococcus abyssi GE51
OTSU357244 ncbi Orientia tsutsugamushi Boryong0
NSP387092 ncbi Nitratiruptor sp. SB155-21
NSEN222891 ncbi Neorickettsia sennetsu Miyayama0
NPHA348780 ncbi Natronomonas pharaonis DSM 21601
NGON242231 ncbi Neisseria gonorrhoeae FA 10900
NFAR247156 ncbi Nocardia farcinica IFM 101520
MTUB419947 ncbi Mycobacterium tuberculosis H37Ra0
MTUB336982 ncbi Mycobacterium tuberculosis F110
MTHE349307 ncbi Methanosaeta thermophila PT0
MTHE264732 ncbi Moorella thermoacetica ATCC 390731
MTHE187420 ncbi Methanothermobacter thermautotrophicus Delta H1
MTBRV ncbi Mycobacterium tuberculosis H37Rv0
MTBCDC ncbi Mycobacterium tuberculosis CDC15510
MSYN262723 ncbi Mycoplasma synoviae 530
MSME246196 ncbi Mycobacterium smegmatis MC2 1551
MSED399549 ncbi Metallosphaera sedula DSM 53480
MPUL272635 ncbi Mycoplasma pulmonis UAB CTIP0
MPNE272634 ncbi Mycoplasma pneumoniae M1290
MPEN272633 ncbi Mycoplasma penetrans HF-20
MMYC272632 ncbi Mycoplasma mycoides mycoides SC str. PG10
MMOB267748 ncbi Mycoplasma mobile 163K0
MMAZ192952 ncbi Methanosarcina mazei Go11
MMAR444158 ncbi Methanococcus maripaludis C60
MMAR426368 ncbi Methanococcus maripaludis C71
MMAR402880 ncbi Methanococcus maripaludis C50
MMAR368407 ncbi Methanoculleus marisnigri JR11
MMAR267377 ncbi Methanococcus maripaludis S20
MLEP272631 ncbi Mycobacterium leprae TN0
MLAB410358 ncbi Methanocorpusculum labreanum Z0
MKAN190192 ncbi Methanopyrus kandleri AV190
MJAN243232 ncbi Methanocaldococcus jannaschii DSM 26610
MHYO295358 ncbi Mycoplasma hyopneumoniae 2320
MHYO262722 ncbi Mycoplasma hyopneumoniae 74480
MHYO262719 ncbi Mycoplasma hyopneumoniae J0
MHUN323259 ncbi Methanospirillum hungatei JF-11
MGEN243273 ncbi Mycoplasma genitalium G370
MFLO265311 ncbi Mesoplasma florum L10
MCAP340047 ncbi Mycoplasma capricolum capricolum ATCC 273430
MBUR259564 ncbi Methanococcoides burtonii DSM 62421
MBOV410289 ncbi Mycobacterium bovis BCG str. Pasteur 1173P20
MBOV233413 ncbi Mycobacterium bovis AF2122/970
MBAR269797 ncbi Methanosarcina barkeri Fusaro1
MAVI243243 ncbi Mycobacterium avium 1040
MART243272 ncbi Mycoplasma arthritidis 158L3-10
MAEO419665 ncbi Methanococcus aeolicus Nankai-31
MACE188937 ncbi Methanosarcina acetivorans C2A1
MABS561007 ncbi Mycobacterium abscessus ATCC 199770
LWEL386043 ncbi Listeria welshimeri serovar 6b str. SLCC53340
LREU557436 ncbi Lactobacillus reuteri DSM 200160
LPNE400673 ncbi Legionella pneumophila Corby0
LPNE297246 ncbi Legionella pneumophila Paris0
LPNE297245 ncbi Legionella pneumophila Lens0
LPNE272624 ncbi Legionella pneumophila pneumophila Philadelphia 10
LMON265669 ncbi Listeria monocytogenes 4b F23650
LMON169963 ncbi Listeria monocytogenes EGD-e0
LLAC272623 ncbi Lactococcus lactis lactis Il14031
LLAC272622 ncbi Lactococcus lactis cremoris SK110
LINT363253 ncbi Lawsonia intracellularis PHE/MN1-001
LINT267671 ncbi Leptospira interrogans serovar Copenhageni str. Fiocruz L1-1301
LINT189518 ncbi Leptospira interrogans serovar Lai str. 566011
LINN272626 ncbi Listeria innocua Clip112620
LCAS321967 ncbi Lactobacillus casei ATCC 3341
LBRE387344 ncbi Lactobacillus brevis ATCC 3670
LBOR355277 ncbi Leptospira borgpetersenii serovar Hardjo-bovis JB1971
LBOR355276 ncbi Leptospira borgpetersenii serovar Hardjo-bovis L5501
LBIF456481 ncbi Leptospira biflexa serovar Patoc strain Patoc 1 (Paris)1
LBIF355278 ncbi Leptospira biflexa serovar Patoc strain Patoc 1 (Ames)1
IHOS453591 ncbi Ignicoccus hospitalis KIN4/I0
HWAL362976 ncbi Haloquadratum walsbyi DSM 167901
HSP64091 ncbi Halobacterium sp. NRC-11
HSOM228400 ncbi Haemophilus somnus 23360
HSOM205914 ncbi Haemophilus somnus 129PT0
HSAL478009 ncbi Halobacterium salinarum R11
HPYL85963 ncbi Helicobacter pylori J990
HPYL357544 ncbi Helicobacter pylori HPAG10
HPY ncbi Helicobacter pylori 266950
HMUK485914 ncbi Halomicrobium mukohataei DSM 122860
HMOD498761 ncbi Heliobacterium modesticaldum Ice10
HMAR272569 ncbi Haloarcula marismortui ATCC 430491
HINF71421 ncbi Haemophilus influenzae Rd KW200
HINF374930 ncbi Haemophilus influenzae PittEE1
HINF281310 ncbi Haemophilus influenzae 86-028NP0
HHEP235279 ncbi Helicobacter hepaticus ATCC 514490
HDUC233412 ncbi Haemophilus ducreyi 35000HP0
HBUT415426 ncbi Hyperthermus butylicus DSM 54560
HACI382638 ncbi Helicobacter acinonychis Sheeba0
GBET391165 ncbi Granulibacter bethesdensis CGDNIH11
FTUL458234 ncbi Francisella tularensis holarctica FTNF002-001
FTUL418136 ncbi Francisella tularensis tularensis WY96-34181
FTUL401614 ncbi Francisella novicida U1120
FTUL393115 ncbi Francisella tularensis tularensis FSC1981
FTUL393011 ncbi Francisella tularensis holarctica OSU181
FTUL351581 Francisella tularensis holarctica FSC2001
FRANT ncbi Francisella tularensis tularensis SCHU S41
FPHI484022 ncbi Francisella philomiragia philomiragia ATCC 250171
FNUC190304 ncbi Fusobacterium nucleatum nucleatum ATCC 255860
ERUM302409 ncbi Ehrlichia ruminantium Gardel0
ERUM254945 ncbi Ehrlichia ruminantium Welgevonden0
EFAE226185 ncbi Enterococcus faecalis V5831
ECHA205920 ncbi Ehrlichia chaffeensis Arkansas0
ECAN269484 ncbi Ehrlichia canis Jake0
DSP255470 ncbi Dehalococcoides sp. CBDB10
DSP216389 ncbi Dehalococcoides sp. BAV10
DNOD246195 ncbi Dichelobacter nodosus VCS1703A1
DHAF138119 ncbi Desulfitobacterium hafniense Y511
DETH243164 ncbi Dehalococcoides ethenogenes 1950
CVES412965 ncbi Candidatus Vesicomyosocius okutanii HA0
CTRA471473 ncbi Chlamydia trachomatis L2b/UCH-1/proctitis0
CTRA471472 ncbi Chlamydia trachomatis 434/Bu0
CTEP194439 ncbi Chlorobium tepidum TLS0
CSUL444179 ncbi Candidatus Sulcia muelleri GWSS0
CRUT413404 ncbi Candidatus Ruthia magnifica Cm (Calyptogena magnifica)0
CPNE182082 ncbi Chlamydophila pneumoniae TW-1830
CPNE138677 ncbi Chlamydophila pneumoniae J1380
CPNE115713 ncbi Chlamydophila pneumoniae CWL0290
CPNE115711 ncbi Chlamydophila pneumoniae AR390
CPEL335992 ncbi Candidatus Pelagibacter ubique HTCC10620
CMUR243161 ncbi Chlamydia muridarum Nigg0
CMET456442 ncbi Candidatus Methanoregula boonei 6A80
CMAQ397948 ncbi Caldivirga maquilingensis IC-1670
CKOR374847 ncbi Candidatus Korarchaeum cryptofilum OPF81
CKLU431943 ncbi Clostridium kluyveri DSM 5551
CJEJ407148 ncbi Campylobacter jejuni jejuni 811160
CJEJ360109 ncbi Campylobacter jejuni doylei 269.970
CJEJ354242 ncbi Campylobacter jejuni jejuni 81-1760
CJEJ195099 ncbi Campylobacter jejuni RM12211
CJEJ192222 ncbi Campylobacter jejuni jejuni NCTC 111680
CJEI306537 ncbi Corynebacterium jeikeium K4110
CHYD246194 ncbi Carboxydothermus hydrogenoformans Z-29011
CHOM360107 ncbi Campylobacter hominis ATCC BAA-3810
CFET360106 ncbi Campylobacter fetus fetus 82-400
CFEL264202 ncbi Chlamydophila felis Fe/C-560
CDIP257309 ncbi Corynebacterium diphtheriae NCTC 131290
CDIF272563 ncbi Clostridium difficile 6301
CCUR360105 ncbi Campylobacter curvus 525.920
CCON360104 ncbi Campylobacter concisus 138260
CCAV227941 ncbi Chlamydophila caviae GPIC0
CBUR434922 ncbi Coxiella burnetii Dugway 5J108-1110
CBUR360115 ncbi Coxiella burnetii RSA 3310
CBUR227377 ncbi Coxiella burnetii RSA 4930
CBOT508765 ncbi Clostridium botulinum B str. Eklund 17B1
CBLO291272 ncbi Candidatus Blochmannia pennsylvanicus BPEN0
CBLO203907 ncbi Candidatus Blochmannia floridanus0
CABO218497 ncbi Chlamydophila abortus S26/30
BTUR314724 ncbi Borrelia turicatae 91E1350
BTRI382640 ncbi Bartonella tribocorum CIP 1054760
BSP107806 ncbi Buchnera aphidicola APS (Acyrthosiphon pisum)0
BQUI283165 ncbi Bartonella quintana Toulouse0
BHER314723 ncbi Borrelia hermsii DAH0
BHEN283166 ncbi Bartonella henselae Houston-10
BGAR290434 ncbi Borrelia garinii PBi0
BCIC186490 Candidatus Baumannia cicadellinicola0
BCER315749 ncbi Bacillus cytotoxicus NVH 391-981
BCER288681 ncbi Bacillus cereus E33L1
BBUR224326 ncbi Borrelia burgdorferi B310
BBAC360095 ncbi Bartonella bacilliformis KC5830
BBAC264462 ncbi Bdellovibrio bacteriovorus HD1000
BAPH372461 ncbi Buchnera aphidicola Cc (Cinara cedri)0
BAPH198804 ncbi Buchnera aphidicola Sg (Schizaphis graminum)0
BANT592021 ncbi Bacillus anthracis A02481
BANT568206 ncbi Bacillus anthracis CDC 6841
BANT261594 ncbi Bacillus anthracis Ames Ancestor1
BANT260799 ncbi Bacillus anthracis Sterne1
BAFZ390236 ncbi Borrelia afzelii PKo0
AYEL322098 ncbi Aster yellows witches-broom phytoplasma AYWB0
AURANTIMONAS Aurantimonas manganoxydans SI85-9A10
ASAL382245 ncbi Aeromonas salmonicida salmonicida A4490
APHA212042 ncbi Anaplasma phagocytophilum HZ0
APER272557 ncbi Aeropyrum pernix K10
AORE350688 ncbi Alkaliphilus oremlandii OhILAs0
AMET293826 ncbi Alkaliphilus metalliredigens QYMF0
AMAR234826 ncbi Anaplasma marginale St. Maries0
ALAI441768 ncbi Acholeplasma laidlawii PG-8A1
AFUL224325 ncbi Archaeoglobus fulgidus DSM 43041
ACEL351607 ncbi Acidothermus cellulolyticus 11B1
ABUT367737 ncbi Arcobacter butzleri RM40181
AAVE397945 ncbi Acidovorax citrulli AAC00-11
AAEO224324 ncbi Aquifex aeolicus VF50


Names of the homologs of the genes in the group in each of these orgs
  G7107   G7105   G7098   G7097   G6504   EG11826   
YPSE349747
YPSE273123
YPES386656
YPES377628
YPES360102
YPES349746
YPES214092
YPES187410
YENT393305
WSUC273121
WPIP955
WPIP80849
VEIS391735 VEIS_3055
UURE95667
UURE95664
UPAR505682
UMET351160 LRC550
TWHI218496
TWHI203267
TVOL273116 TVN0889
TTHE300852
TTHE262724
TROS309801 TRD_A0816
TPEN368408 TPEN_1738
TPAL243276
TKOD69014 TK1819
TFUS269800
TDEN326298
TDEN243275
TCRU317025 TCR_1675
TACI273075
SWOL335541
STRO369723 STROP_3593
STOK273063
STHE292459 STH2716
SSP321332 CYB_1783
SSP1131
SSOL273057
SRUB309807 SRU_0592
SPYO370554
SPYO370553
SPYO370552
SPYO370551
SPYO319701
SPYO293653
SPYO286636
SPYO198466
SPYO193567
SPYO186103
SPYO160490
SPNE171101
SMUT210007
SMAR399550
SERY405948 SACE_3176
SEPI176280
SEPI176279
SELO269084 SYC2069_C
SCO SCO2707
SAVE227882 SAV5358
SARE391037 SARE_3974
SACI330779
RTYP257363
RSAL288705
RRIC452659
RRIC392021
RPRO272947
RPAL316056 RPC_2682
RMAS416276
RFEL315456
RCON272944
RCAN293613
RBEL391896
RBEL336407
RAKA293614
PTOR263820
PSP312153 PNUC_0310
PMAR93060
PMAR74547 PMT1908
PMAR74546
PMAR59920
PMAR167555
PMAR167546
PMAR167539
PMAR146891
PISL384616
PHOR70601 PH0390
PFUR186497 PF1354
PAST100379
PARS340102
PAER208963
PAER178306
PACN267747 PPA0349
PABY272844 PAB0783
OTSU357244
NSP387092 NIS_1405
NSEN222891
NPHA348780 NP1944A
NGON242231
NFAR247156
MTUB419947
MTUB336982
MTHE349307
MTHE264732 MOTH_0669
MTHE187420 MTH379
MTBRV
MTBCDC
MSYN262723
MSME246196 MSMEG_5968
MSED399549
MPUL272635
MPNE272634
MPEN272633
MMYC272632
MMOB267748
MMAZ192952 MM1156
MMAR444158
MMAR426368 MMARC7_0341
MMAR402880
MMAR368407 MEMAR_0698
MMAR267377
MLEP272631
MLAB410358
MKAN190192
MJAN243232
MHYO295358
MHYO262722
MHYO262719
MHUN323259 MHUN_2377
MGEN243273
MFLO265311
MCAP340047
MBUR259564 MBUR_2028
MBOV410289
MBOV233413
MBAR269797 MBAR_A0234
MAVI243243
MART243272
MAEO419665 MAEO_0391
MACE188937 MA2180
MABS561007
LWEL386043
LREU557436
LPNE400673
LPNE297246
LPNE297245
LPNE272624
LMON265669
LMON169963
LLAC272623 L13324
LLAC272622
LINT363253 LI0512
LINT267671 LIC_11459
LINT189518 LA2509
LINN272626
LCAS321967 LSEI_2017
LBRE387344
LBOR355277 LBJ_1662
LBOR355276 LBL_1881
LBIF456481 LEPBI_I1732
LBIF355278 LBF_1679
IHOS453591
HWAL362976 HQ2687A
HSP64091 VNG1054G
HSOM228400
HSOM205914
HSAL478009 OE2529F
HPYL85963
HPYL357544
HPY
HMUK485914
HMOD498761
HMAR272569 PNG7214
HINF71421
HINF374930 CGSHIEE_07670
HINF281310
HHEP235279
HDUC233412
HBUT415426
HACI382638
GBET391165 GBCGDNIH1_0247
FTUL458234 FTA_0627
FTUL418136 FTW_0412
FTUL401614
FTUL393115 FTF1463C
FTUL393011 FTH_0593
FTUL351581 FTL_0593
FRANT WBTB
FPHI484022 FPHI_1244
FNUC190304
ERUM302409
ERUM254945
EFAE226185 EF_2177
ECHA205920
ECAN269484
DSP255470
DSP216389
DNOD246195 DNO_0340
DHAF138119 DSY3322
DETH243164
CVES412965
CTRA471473
CTRA471472
CTEP194439
CSUL444179
CRUT413404
CPNE182082
CPNE138677
CPNE115713
CPNE115711
CPEL335992
CMUR243161
CMET456442
CMAQ397948
CKOR374847 KCR_0849
CKLU431943 CKL_3161
CJEJ407148
CJEJ360109
CJEJ354242
CJEJ195099 CJE_1618
CJEJ192222
CJEI306537
CHYD246194 CHY_1059
CHOM360107
CFET360106
CFEL264202
CDIP257309
CDIF272563 CD2783
CCUR360105
CCON360104
CCAV227941
CBUR434922
CBUR360115
CBUR227377
CBOT508765 CLL_A3254
CBLO291272
CBLO203907
CABO218497
BTUR314724
BTRI382640
BSP107806
BQUI283165
BHER314723
BHEN283166
BGAR290434
BCIC186490
BCER315749 BCER98_3948
BCER288681 BCE33L5123
BBUR224326
BBAC360095
BBAC264462
BAPH372461
BAPH198804
BANT592021 BAA_5706
BANT568206 BAMEG_5723
BANT261594 GBAA5676
BANT260799 BAS5279
BAFZ390236
AYEL322098
AURANTIMONAS
ASAL382245
APHA212042
APER272557
AORE350688
AMET293826
AMAR234826
ALAI441768 ACL_1019
AFUL224325 AF_0595
ACEL351607 ACEL_1939
ABUT367737 ABU_0682
AAVE397945 AAVE_1209
AAEO224324


Organism features enriched in list (features available for 262 out of the 271 orgs in the list)
Feature    Pvalue       Num occurrences in list  Total num occurrences  
Arrangment:Pairs 4.602e-1022112
Arrangment:Singles 0.0036545143286
Disease:Bubonic_plague 0.007979366
Disease:Pharyngitis 0.001567388
Disease:Wide_range_of_infections 0.00013421111
Disease:bronchitis_and_pneumonitis 0.001567388
Endospores:No 5.225e-6120211
GC_Content_Range4:0-40 3.509e-19147213
GC_Content_Range4:40-60 0.000231481224
GC_Content_Range4:60-100 5.473e-1034145
GC_Content_Range7:0-30 0.00005213447
GC_Content_Range7:30-40 8.203e-13113166
GC_Content_Range7:50-60 2.236e-725107
GC_Content_Range7:60-70 5.883e-1030134
Genome_Size_Range5:0-2 5.904e-42139155
Genome_Size_Range5:4-6 8.318e-1639184
Genome_Size_Range5:6-10 9.210e-7647
Genome_Size_Range9:0-1 1.924e-102727
Genome_Size_Range9:1-2 1.308e-29112128
Genome_Size_Range9:3-4 0.00157802377
Genome_Size_Range9:4-5 6.303e-62496
Genome_Size_Range9:5-6 2.200e-91588
Genome_Size_Range9:6-8 3.222e-7338
Gram_Stain:Gram_Neg 0.0001624129333
Habitat:Host-associated 0.0000173116206
Habitat:Multiple 0.000024358178
Habitat:Terrestrial 0.0016394631
Motility:No 0.002087982151
Motility:Yes 4.986e-791267
Optimal_temp.:25-30 0.0011812219
Optimal_temp.:28-30 0.003540277
Oxygen_Req:Facultative 0.000219371201
Oxygen_Req:Microaerophilic 0.00346261418
Pathogenic_in:Animal 0.00128564166
Pathogenic_in:Human 0.0004756114213
Pathogenic_in:No 0.000438383226
Pathogenic_in:Rodent 0.003540277
Shape:Irregular_coccus 9.262e-71717
Shape:Rod 1.284e-14111347
Shape:Sphere 0.00192521519
Shape:Spiral 7.090e-93134
Temp._range:Hyperthermophilic 0.00015961923



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ORGANISMS ENRICHED FOR GROUP:

Total number of orgs: 1
Effective number of orgs (counting one per cluster within 468 clusters): 1

Organism list
Homologs in each organism in the list
Features enriched in organism list


Follow (ncbi) link, when present, to find the set of organism features for each organism
Org ID  Org Name    Pvalue       # genes in tgt genome found in org  # genes in group found in org  
FSUC59374 ncbi Fibrobacter succinogenes succinogenes S85 0.00566247306


Names of the homologs of the genes in the group in each of these orgs
  G7107   G7105   G7098   G7097   G6504   EG11826   
FSUC59374 FSU1216FSU1424FSU2799FSU3241FSU1216FSU1424


Organism features enriched in list (features available for 1 out of the 1 orgs in the list)
Feature    Pvalue       Num occurrences in list  Total num occurrences  
Shape:Pleomorphic_rod 0.003430512



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ORGANISMS DEPLETED FOR GROUP:




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PHYLOGENETIC PROFILE SIMILARITY WITH KNOWN PATHWAYS:

Pathways or complexes with absolute value of Pearson coefficient with respect to candidate larger than 0.4 are listed below
The candidate is assumed to exist in orgs listed in section List of organisms containing most genes from the group


Pathway or complex  # Orgs containing it  # of those orgs also containing candidate  Pearson Coeff  
COBALSYN-PWY (adenosylcobalamin salvage from cobinamide I)1951020.4825
GLYCOCAT-PWY (glycogen degradation I)2461120.4462
GDPRHAMSYN-PWY (GDP-D-rhamnose biosynthesis)156850.4433
PWY0-1241 (ADP-L-glycero-β-D-manno-heptose biosynthesis)2181030.4355
PWY-1269 (CMP-KDO biosynthesis I)3251290.4308
GALACTCAT-PWY (D-galactonate degradation)104650.4293
NAGLIPASYN-PWY (lipid IVA biosynthesis)3481330.4244
3-HYDROXYPHENYLACETATE-DEGRADATION-PWY (4-hydroxyphenylacetate degradation)149800.4194
LIPA-CORESYN-PWY (Lipid A-core biosynthesis)176880.4138
GALACTITOLCAT-PWY (galactitol degradation)73510.4136
GLUCARDEG-PWY (D-glucarate degradation I)152800.4105
AST-PWY (arginine degradation II (AST pathway))120680.4001



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PAIRWISE GENOME CONTEXT SCORE MATRIX:

  G7105   G7098   G7097   G6504   EG11826   
G71070.9996040.9993010.998540.9999560.99962
G71050.9992340.9985920.9996050.999973
G70980.9987510.9993420.999315
G70970.9986410.998536
G65040.999643
EG11826



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PAIRWISE BLAST SCORES:

  G7107   G7105   G7098   G7097   G6504   EG11826   
G71070.0f0---0-
G7105-0.0f0---0
G7098--0.0f0---
G7097---0.0f0--
G65040---0.0f0-
EG11826-0---0.0f0



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PATHWAYS OR PROTEIN COMPLEX MATCHES IN TARGET ORG:

For each case, all genes involved in the pathway or complex are listed. For each gene we list: a tag indicating whether the gene is part of the candidate list or not, the average and the minimum scores of the gene to the candidate list, the gene name, and its product names.

- CPLX0-7529 (capsular polysaccharide export apparatus) (degree of match pw to cand: 1.000, degree of match cand to pw: 0.333, average score: 1.000)
  Genes in pathway or complex:
   *in cand* 0.9995 0.9986 G7105 (wzc) G7105-MONOMER (tyrosine kinase involved in colanic acid biosynthesis)
   *in cand* 0.9995 0.9985 G7107 (wza) G7107-MONOMER (lipoprotein required for capsular polysaccharide translocation through the outer membrane)
  Genes in candidate but not in this pathway or complex:
   *in cand* 0.9995 0.9985 EG11826 (etk) EG11826-MONOMER (autophosphorylating protein tyrosine kinase)
   *in cand* 0.9995 0.9986 G6504 (gfcE) G6504-MONOMER (predicted exopolysaccharide export protein)
   *in cand* 0.9988 0.9985 G7097 (wzxC) G7097-MONOMER (WzxC)
   *in cand* 0.9993 0.9988 G7098 (wcaJ) G7098-MONOMER (predicted colanic acid biosynthsis UDP-glucose lipid carrier transferase)



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GENOME CONTEXT INFORMATION:

Each row corresponds to a replicon in an organism, each column to a gene in the candidate. The second column indicates whether the organims was included in the list used to compute the genome context scores or not. Some organisms are not included because they are phylogenetically too similar to others already in the list.
The number in the matrix indicate the position of the homolog of the gene in the replicon. All numbers are relative to the smaller one, which is assigned a position of zero. Two columns with the same number indicate that the two genes matched the same gene in that organism.

Genome browser links for gene clusters

The links below opens a genome browser BioCyc page for each cluster of genes in the target genome. These pages shows the central gene of the cluster in the target genome and its best homolog in the reference genomes, for the genomes that contain homologs for at least 75% of the genes in the group. Only one genome per phylogenetic cluster of organisms is shown, to keep the list smaller.

G7097 G7098 (centered at G7098)
EG11826 (centered at EG11826)
G6504 (centered at G6504)
G7105 (centered at G7105)
G7107 (centered at G7107)


ORG:REPLICON:CIRC?\GENE  IN REF LIST  G7107   G7105   G7098   G7097   G6504   EG11826   
237/623265/623275/623212/623239/623267/623
AAUR290340:2:Tyes-9819880-981
AAVE397945:0:Tyes--0---
ABAC204669:0:Tyes011902-24921
ABAU360910:0:Tyes3140-314
ABOR393595:0:Tyes0238-02
ABUT367737:0:Tyes---0--
ACAU438753:0:Tyes0-4437-0-
ACEL351607:0:Tyes--0---
ACRY349163:8:Tyes290414490222229041449
ADEH290397:0:Tyes183818370-18381837
AEHR187272:0:Tyes6396400-639640
AFER243159:0:Tyes3130012243130
AFUL224325:0:Tyes---0--
AHYD196024:0:Tyes20--20
ALAI441768:0:Tyes-----0
AMAR329726:8:Tyes0-----
AMAR329726:9:Tyes-05021148215920
ANAE240017:0:Tyes-0---0
APLE416269:0:Tyes126-0-126-
APLE434271:0:Tno0---0-
ASP1667:3:Tyes-0871865-24
ASP232721:2:Tyes-022310-0
ASP62928:0:Tyes105206102520
ASP62977:0:Tyes2027-20
ASP76114:2:Tyes158230890161015823089
AVAR240292:3:Tyes245720820902457208
BABO262698:1:Tno2-0-2-
BAMB339670:1:Tno-0----
BAMB339670:2:Tno3-0-34
BAMB398577:1:Tno-----0
BAMB398577:2:Tno32029-32-
BAMY326423:0:Tyes-0110109-180
BANT260799:0:Tno---0--
BANT261594:2:Tno---0--
BANT568206:2:Tyes---0--
BANT592021:2:Tno---0--
BBRO257310:0:Tyes0---0-
BCAN483179:0:Tno---0--
BCAN483179:1:Tno0---0-
BCEN331271:1:Tno104-10
BCEN331272:2:Tyes340-34
BCER226900:1:Tyes-3604-0-3604
BCER288681:0:Tno---0--
BCER315749:1:Tyes---0--
BCER405917:1:Tyes-0-158-0
BCER572264:1:Tno-4-0-4
BCLA66692:0:Tyes-7060--706
BFRA272559:1:Tyes12051995199304221995
BFRA295405:0:Tno71515761574138401576
BHAL272558:0:Tyes-0---0
BJAP224911:0:Fyes21403968214
BLIC279010:0:Tyes-0109108-0
BLON206672:0:Tyes-9780--978
BMAL243160:0:Tno-0---0
BMAL243160:1:Tno1-0-1-
BMAL320388:0:Tno-0---0
BMAL320388:1:Tno1-0-1-
BMAL320389:0:Tyes-0---0
BMAL320389:1:Tyes1-0-1-
BMEL224914:0:Tno---0--
BMEL224914:1:Tno0-2-0-
BMEL359391:1:Tno2-0-2-
BOVI236:1:Tyes1-0-1-
BPAR257311:0:Tno0---0-
BPER257313:0:Tyes0---0-
BPET94624:0:Tyes0---0-
BPSE272560:0:Tyes0-3-0-
BPSE272560:1:Tyes-0---0
BPSE320372:0:Tno1-4-10
BPSE320372:1:Tno-0----
BPSE320373:0:Tno0-3-0-
BPSE320373:1:Tno-0---0
BPUM315750:0:Tyes-0130129-0
BSP36773:0:Tyes-0----
BSP36773:1:Tyes0-458-455454
BSP376:0:Tyes57855105665782678
BSUB:0:Tyes-64-0-64
BSUI204722:0:Tyes---0--
BSUI204722:1:Tyes2-0-2-
BSUI470137:0:Tno---0--
BSUI470137:1:Tno2-0-2-
BTHA271848:0:Tno3-0-34
BTHA271848:1:Tno-0----
BTHE226186:0:Tyes90120120212042
BTHU281309:1:Tno-0-150-0
BTHU412694:1:Tno-4-0-4
BVIE269482:5:Tyes-3-0-3
BVIE269482:6:Tyes3-0-3-
BWEI315730:4:Tyes-0-148-0
BXEN266265:0:Tyes---0--
BXEN266265:1:Tyes05131712-511513
CACE272562:1:Tyes-019--0
CAULO:0:Tyes502297-50
CBEI290402:0:Tyes-12270-12
CBOT36826:1:Tno-0403--0
CBOT441770:0:Tyes-0487--0
CBOT441771:0:Tno-0428--0
CBOT441772:1:Tno-0388--0
CBOT498213:1:Tno-0428--0
CBOT508765:1:Tyes--0---
CBOT515621:2:Tyes-0428--0
CBOT536232:0:Tno-0429--0
CCHL340177:0:Tyes01-1701
CDES477974:0:Tyes-039--0
CDIF272563:1:Tyes--0---
CEFF196164:0:Fyes-0---0
CGLU196627:0:Tyes-0-7-0
CHUT269798:0:Tyes197001034-19700
CHYD246194:0:Tyes--0---
CJAP155077:0:Tyes1412052751-
CJEJ195099:0:Tno----0-
CKLU431943:1:Tyes--0---
CKOR374847:0:Tyes---0--
CMIC31964:2:Tyes-7520742-752
CMIC443906:2:Tyes-105913110-0
CNOV386415:0:Tyes-0266268-0
CPER195102:1:Tyes-0-165-0
CPER195103:0:Tno-0-135-0
CPER289380:3:Tyes-0---0
CPHY357809:0:Tyes-423090-4
CPRO264201:0:Fyes0---0-
CPSY167879:0:Tyes02-260702
CSAL290398:0:Tyes2728802728
CSP501479:1:Fyes-1--01
CSP501479:7:Fyes---0--
CSP501479:8:Fyes0-----
CSP78:2:Tyes54233100-5423310
CTET212717:0:Tyes--11610--
CVIO243365:0:Tyes0---0-
DARO159087:0:Tyes0--170-
DDES207559:0:Tyes130-13
DGEO319795:0:Tyes---0--
DGEO319795:1:Tyes-01--0
DHAF138119:0:Tyes--0---
DNOD246195:0:Tyes--0---
DOLE96561:0:Tyes10--10
DPSY177439:1:Fyes20--20
DRAD243230:2:Tyes-01--0
DRED349161:0:Tyes-013697-0
DSHI398580:1:Tyes---0--
DSHI398580:5:Tyes0---0-
DVUL882:0:Tyes130-13
ECAR218491:0:Tyes9359370-935937
ECOL199310:0:Tno1815101815
ECOL316407:0:Tno1614101614
ECOL331111:6:Tno201201120020
ECOL362663:0:Tno1614101614
ECOL364106:1:Tno1715101715
ECOL405955:2:Tyes1614101614
ECOL409438:6:Tyes1614101614
ECOL413997:0:Tno1614101614
ECOL439855:4:Tno02151602
ECOL469008:0:Tno02151602
ECOL481805:0:Tno101010120110101012
ECOL585034:0:Tno1614101614
ECOL585035:0:Tno1614101614
ECOL585055:0:Tno1614101614
ECOL585056:2:Tno1614101614
ECOL585057:0:Tno02151602
ECOL585397:0:Tno1614101614
ECOL83334:0:Tno201748174720
ECOLI:0:Tno111711151102110120
ECOO157:0:Tno1614101614
EFAE226185:3:Tyes--0---
EFER585054:1:Tyes1614101614
ELIT314225:0:Tyes134724252437013472425
ESP42895:1:Tyes1654105654
FALN326424:0:Tyes-0430--0
FJOH376686:0:Tyes074672192207
FMAG334413:1:Tyes-0---0
FNOD381764:0:Tyes0-1434-0-
FPHI484022:1:Tyes--0---
FRANT:0:Tno--0---
FSP106370:0:Tyes-188722700-1887
FSP1855:0:Tyes-051865197-0
FSUC59374:0:Tyes0206153519660206
FTUL351581:0:Tno--0---
FTUL393011:0:Tno--0---
FTUL393115:0:Tyes--0---
FTUL418136:0:Tno--0---
FTUL458234:0:Tno--0---
GBET391165:0:Tyes---0--
GFOR411154:0:Tyes10--10
GKAU235909:1:Tyes-0---0
GMET269799:1:Tyes18161901816
GOXY290633:5:Tyes0---0-
GSUL243231:0:Tyes203-20
GTHE420246:1:Tyes-0---0
GURA351605:0:Tyes01149629201
GVIO251221:0:Tyes766038307677
HARS204773:0:Tyes1301713
HAUR316274:2:Tyes-383716213410-0
HCHE349521:0:Tyes201212122620
HHAL349124:0:Tyes1-0-1-
HINF374930:0:Tyes--0---
HMAR272569:7:Tyes---0--
HNEP81032:0:Tyes14386-014386
HSAL478009:4:Tyes---0--
HSP64091:2:Tno---0--
HWAL362976:1:Tyes---0--
ILOI283942:0:Tyes0---0-
JSP290400:0:Tyes---0--
JSP290400:1:Tyes0---0-
JSP375286:0:Tyes1301713
KPNE272620:2:Tyes12110-1211
KRAD266940:2:Fyes-10863-1
LACI272621:0:Tyes-11-0-11
LBIF355278:2:Tyes--0---
LBIF456481:2:Tno--0---
LBOR355276:1:Tyes--0---
LBOR355277:1:Tno--0---
LCAS321967:1:Tyes--0---
LCHO395495:0:Tyes11661837602018
LDEL321956:0:Tyes-0---0
LDEL390333:0:Tyes-0---0
LGAS324831:0:Tyes-0---0
LHEL405566:0:Tyes-0---0
LINT189518:1:Tyes--0---
LINT267671:1:Tno--0---
LINT363253:3:Tyes--0---
LJOH257314:0:Tyes-0---0
LLAC272623:0:Tyes---0--
LMES203120:1:Tyes-0---0
LPLA220668:0:Tyes-7793--0
LSAK314315:0:Tyes-0---0
LSPH444177:1:Tyes-1577-0-1577
LXYL281090:0:Tyes-0---0
MACE188937:0:Tyes---0--
MAEO419665:0:Tyes---0--
MAER449447:0:Tyes1551693015641551693
MAQU351348:2:Tyes0--9510-
MBAR269797:1:Tyes---0--
MBUR259564:0:Tyes---0--
MCAP243233:0:Tyes19620-1962
MEXT419610:0:Tyes1604-0-1604-
MFLA265072:0:Tyes204-20
MGIL350054:3:Tyes-330026580-3300
MHUN323259:0:Tyes---0--
MLOT266835:2:Tyes2580-2578025806
MMAG342108:0:Tyes-510-5
MMAR368407:0:Tyes---0--
MMAR394221:0:Tyes10-0-10-
MMAR426368:0:Tyes---0--
MMAZ192952:0:Tyes---0--
MPET420662:1:Tyes19986334019986
MSME246196:0:Tyes---0--
MSP164756:1:Tno-1226640-12
MSP164757:0:Tno-02624--0
MSP189918:2:Tyes-1227070-12
MSP266779:3:Tyes2120115130212011
MSP400668:0:Tyes0-46-0-
MSP409:2:Tyes3305-0-33053044
MSTA339860:0:Tyes--1420--
MSUC221988:0:Tyes106-10
MTHE187420:0:Tyes---0--
MTHE264732:0:Tyes--0---
MVAN350058:0:Tyes-05203552-0
MXAN246197:0:Tyes86701830108670
NARO279238:0:Tyes025132507191102513
NEUR228410:0:Tyes193319340167019331934
NEUT335283:2:Tyes11971198845011971198
NHAM323097:2:Tyes560-0542560559
NMEN122586:0:Tno0---0-
NMEN122587:0:Tyes0---0-
NMEN272831:0:Tno0---0-
NMEN374833:0:Tno0---0-
NMUL323848:3:Tyes3505335
NOCE323261:1:Tyes4740104314740
NPHA348780:2:Tyes---0--
NSP103690:6:Tyes15502022015502
NSP35761:1:Tyes-0---0
NSP387092:0:Tyes--0---
NWIN323098:0:Tyes--0-2-
OANT439375:4:Tyes---0--
OANT439375:5:Tyes0-3-0-
OCAR504832:0:Tyes230-0-230228
OIHE221109:0:Tyes-0---0
PABY272844:0:Tyes---0--
PACN267747:0:Tyes--0---
PAER208964:0:Tno3-0-3-
PARC259536:0:Tyes0224-02
PATL342610:0:Tyes102295901191023
PCAR338963:0:Tyes01--01
PCRY335284:1:Tyes02--02
PDIS435591:0:Tyes14480636132911232191
PENT384676:0:Tyes466-100466-
PFLU205922:0:Tyes101610261012010161026
PFLU216595:1:Tyes152115360-15211536
PFLU220664:0:Tyes1114-1112-0-
PFUR186497:0:Tyes---0--
PGIN242619:0:Tyes101332-10
PHAL326442:1:Tyes014081411-01408
PHOR70601:0:Tyes---0--
PING357804:0:Tyes0-30-0-
PINT246198:1:Tyes1180-166501666-
PLUM243265:0:Fyes20--20
PLUT319225:0:Tyes59101-5910
PMAR167540:0:Tyes0---0-
PMAR167542:0:Tyes-0---0
PMAR74547:0:Tyes--0---
PMEN399739:0:Tyes0-3-0-
PMOB403833:0:Tyes6490-8226490
PMUL272843:1:Tyes02--02
PNAP365044:8:Tyes650453586563
PPEN278197:0:Tyes-0---0
PPRO298386:2:Tyes20--20
PPUT160488:0:Tno0-1770-
PPUT351746:0:Tyes1353-0111353-
PPUT76869:0:Tno17-01017-
PRUM264731:0:Tyes-520786-52
PSP117:0:Tyes06073026--607
PSP296591:2:Tyes2401524
PSP312153:0:Tyes--0---
PSP56811:2:Tyes20--20
PSTU379731:0:Tyes7340724-734726
PSYR205918:0:Tyes706-70
PSYR223283:2:Tyes706-70
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