CANDIDATE ID: 386

CANDIDATE ID: 386

NUMBER OF GENES: 6
AVERAGE SCORE:    9.9927020e-1 (range=[0.0,1.0])
AVERAGE MINIMUM BLAST P-VAL:    1.0000000e+0

Gene List
List of organisms containing most genes from the group
    Phylogenetic tree highlighting these organisms (opens new page)
List of organisms containing very few or no genes from the group
List of organisms enriched for group
List of organisms depleted for group
Phylogenetic profile similarity with known pathways
Pairwise genome context scores
Pairwise Blast scores
Pathway or protein complex matches in target organism
Genome context matrix
    Genes and their orthologs in genome browser BioCyc pages



GENE LIST:

- G6581 (rluE) (b1135)
   Products of gene:
     - G6581-MONOMER (23S rRNA pseudouridine 2457 synthase)
       Reactions:
        rRNA  ->  rRNA containing pseudouridine

- G6580 (nudJ) (b1134)
   Products of gene:
     - G6580-MONOMER (HMP-PP hydrolase /thiamin pyrophosphate hydrolase [multifunctional])
       Reactions:
        GDP + H2O  ->  GMP + phosphate + H+
        4-amino-5-hydroxymethyl-2-methylpyrimidine-pyrophosphate + H2O  ->  hydroxymethylpyrimidine phosphate + phosphate + H+
        thiamine diphosphate + H2O  ->  thiamine-phosphate + phosphate + H+

- EG11430 (ycfD) (b1128)
   Products of gene:
     - EG11430-MONOMER (conserved protein)

- EG11345 (hflD) (b1132)
   Products of gene:
     - EG11345-MONOMER (lysogenization regulator)

- EG11344 (mnmA) (b1133)
   Products of gene:
     - EG11344-MONOMER (tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase)
       Reactions:
        uridine + L-cysteine + ATP  ->  2-thiouridine + L-alanine + AMP + diphosphate

- EG11314 (purB) (b1131)
   Products of gene:
     - ASL-MONOMER (5'-phosphoribosyl-4-(N-succinocarboxamide)-5-aminoimidazole lyase [multifunctional])
       Reactions:
        5'-phosphoribosyl-4-(N-succinocarboxamide)-5-aminoimidazole  ->  fumarate + aminoimidazole carboxamide ribonucleotide
         In pathways
         PRPP-PWY (superpathway of histidine, purine, and pyrimidine biosynthesis)
         DENOVOPURINE2-PWY (purine nucleotides de novo biosynthesis I)
         PWY-841 (PWY-841)
         PWY-6123 (inosine-5'-phosphate biosynthesis I)
         PWY-6124 (PWY-6124)
        adenylo-succinate  ->  fumarate + AMP
         In pathways
         PRPP-PWY (superpathway of histidine, purine, and pyrimidine biosynthesis)
         DENOVOPURINE2-PWY (purine nucleotides de novo biosynthesis I)
         P121-PWY (P121-PWY)
         PWY-841 (PWY-841)
         PWY-6126 (adenosine nucleotides de novo biosynthesis)



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ORGANISMS CONTAINING AT LEAST 5 GENES FROM THE GROUP:

Total number of orgs: 136
Effective number of orgs (counting one per cluster within 468 clusters): 82

Organism list
Homologs in each organism in the list
Features enriched in organism list


Follow (ncbi) link, when present, to find the set of organism features for each organism
Org ID  Org Name  # genes in group found in org  
YPSE349747 ncbi Yersinia pseudotuberculosis IP 317586
YPSE273123 ncbi Yersinia pseudotuberculosis IP 329536
YPES386656 ncbi Yersinia pestis Pestoides F6
YPES377628 ncbi Yersinia pestis Nepal5166
YPES360102 ncbi Yersinia pestis Antiqua6
YPES349746 ncbi Yersinia pestis Angola6
YPES214092 ncbi Yersinia pestis CO926
YPES187410 ncbi Yersinia pestis KIM 106
YENT393305 ncbi Yersinia enterocolitica enterocolitica 80816
XORY360094 ncbi Xanthomonas oryzae pv. oryzae PXO99A6
XORY342109 ncbi Xanthomonas oryzae pv. oryzae MAFF 3110186
XORY291331 ncbi Xanthomonas oryzae pv. oryzae KACC103316
XFAS405440 ncbi Xylella fastidiosa M125
XFAS183190 ncbi Xylella fastidiosa Temecula15
XFAS160492 ncbi Xylella fastidiosa 9a5c5
XCAM487884 Xanthomonas campestris pv. paulliniae6
XCAM316273 ncbi Xanthomonas campestris pv. vesicatoria str. 85-106
XCAM314565 ncbi Xanthomonas campestris pv. campestris str. 80046
XCAM190485 ncbi Xanthomonas campestris pv. campestris str. ATCC 339136
XAXO190486 ncbi Xanthomonas axonopodis pv. citri str. 3066
VFIS312309 ncbi Vibrio fischeri ES1145
TTUR377629 ncbi Teredinibacter turnerae T79016
TDEN292415 ncbi Thiobacillus denitrificans ATCC 252595
TCRU317025 ncbi Thiomicrospira crunogena XCL-25
STYP99287 ncbi Salmonella enterica enterica serovar Typhimurium str. LT26
SSP94122 ncbi Shewanella sp. ANA-36
SSON300269 ncbi Shigella sonnei Ss0466
SSED425104 ncbi Shewanella sediminis HAW-EB36
SPRO399741 ncbi Serratia proteamaculans 5686
SPEA398579 ncbi Shewanella pealeana ATCC 7003456
SONE211586 ncbi Shewanella oneidensis MR-16
SLOI323850 ncbi Shewanella loihica PV-46
SHIGELLA ncbi Shigella flexneri 2a str. 2457T6
SHAL458817 ncbi Shewanella halifaxensis HAW-EB46
SGLO343509 ncbi Sodalis glossinidius morsitans5
SFLE373384 ncbi Shigella flexneri 5 str. 84016
SFLE198214 ncbi Shigella flexneri 2a str. 3016
SENT454169 ncbi Salmonella enterica enterica serovar Heidelberg str. SL4766
SENT321314 ncbi Salmonella enterica enterica serovar Choleraesuis str. SC-B676
SENT295319 ncbi Salmonella enterica enterica serovar Paratyphi A str. ATCC 91506
SENT220341 ncbi Salmonella enterica enterica serovar Typhi str. CT186
SENT209261 ncbi Salmonella enterica enterica serovar Typhi str. Ty26
SDYS300267 ncbi Shigella dysenteriae Sd1976
SDEN318161 ncbi Shewanella denitrificans OS2175
SDEG203122 ncbi Saccharophagus degradans 2-406
SBOY300268 ncbi Shigella boydii Sb2276
SBAL402882 ncbi Shewanella baltica OS1856
SBAL399599 ncbi Shewanella baltica OS1956
RMET266264 ncbi Ralstonia metallidurans CH345
REUT381666 ncbi Ralstonia eutropha H165
REUT264198 ncbi Ralstonia eutropha JMP1345
PSYR223283 ncbi Pseudomonas syringae pv. tomato str. DC30006
PSYR205918 ncbi Pseudomonas syringae pv. syringae B728a6
PSTU379731 ncbi Pseudomonas stutzeri A15016
PPUT76869 ncbi Pseudomonas putida GB-16
PPUT351746 ncbi Pseudomonas putida F16
PPUT160488 ncbi Pseudomonas putida KT24406
PPRO298386 ncbi Photobacterium profundum SS95
PNAP365044 ncbi Polaromonas naphthalenivorans CJ25
PMUL272843 ncbi Pasteurella multocida multocida Pm706
PMEN399739 ncbi Pseudomonas mendocina ymp6
PLUM243265 ncbi Photorhabdus luminescens laumondii TTO16
PING357804 ncbi Psychromonas ingrahamii 375
PHAL326442 ncbi Pseudoalteromonas haloplanktis TAC1255
PFLU220664 ncbi Pseudomonas fluorescens Pf-56
PFLU216595 ncbi Pseudomonas fluorescens SBW256
PFLU205922 ncbi Pseudomonas fluorescens Pf0-16
PENT384676 ncbi Pseudomonas entomophila L486
PATL342610 ncbi Pseudoalteromonas atlantica T6c5
PAER208964 ncbi Pseudomonas aeruginosa PAO16
PAER208963 ncbi Pseudomonas aeruginosa UCBPP-PA146
MSUC221988 ncbi Mannheimia succiniciproducens MBEL55E6
MSP400668 ncbi Marinomonas sp. MWYL15
MFLA265072 ncbi Methylobacillus flagellatus KT5
MCAP243233 ncbi Methylococcus capsulatus Bath5
MAQU351348 ncbi Marinobacter aquaeolei VT86
KPNE272620 ncbi Klebsiella pneumoniae pneumoniae MGH 785786
JSP375286 ncbi Janthinobacterium sp. Marseille5
ILOI283942 ncbi Idiomarina loihiensis L2TR5
HSOM228400 ncbi Haemophilus somnus 23365
HSOM205914 ncbi Haemophilus somnus 129PT5
HINF71421 ncbi Haemophilus influenzae Rd KW205
HINF281310 ncbi Haemophilus influenzae 86-028NP5
HDUC233412 ncbi Haemophilus ducreyi 35000HP5
HCHE349521 ncbi Hahella chejuensis KCTC 23966
HARS204773 ncbi Herminiimonas arsenicoxydans5
ESP42895 Enterobacter sp.6
EFER585054 ncbi Escherichia fergusonii ATCC 354696
ECOO157 ncbi Escherichia coli O157:H7 EDL9336
ECOL83334 Escherichia coli O157:H76
ECOL585397 ncbi Escherichia coli ED1a6
ECOL585057 ncbi Escherichia coli IAI396
ECOL585056 ncbi Escherichia coli UMN0266
ECOL585055 ncbi Escherichia coli 559896
ECOL585035 ncbi Escherichia coli S886
ECOL585034 ncbi Escherichia coli IAI16
ECOL481805 ncbi Escherichia coli ATCC 87396
ECOL469008 ncbi Escherichia coli BL21(DE3)6
ECOL439855 ncbi Escherichia coli SMS-3-56
ECOL413997 ncbi Escherichia coli B str. REL6066
ECOL409438 ncbi Escherichia coli SE116
ECOL405955 ncbi Escherichia coli APEC O16
ECOL364106 ncbi Escherichia coli UTI896
ECOL362663 ncbi Escherichia coli 5366
ECOL331111 ncbi Escherichia coli E24377A6
ECOL316407 ncbi Escherichia coli K-12 substr. W31106
ECOL199310 ncbi Escherichia coli CFT0736
ECAR218491 ncbi Pectobacterium atrosepticum SCRI10436
DNOD246195 ncbi Dichelobacter nodosus VCS1703A5
CVIO243365 ncbi Chromobacterium violaceum ATCC 124725
CSAL290398 ncbi Chromohalobacter salexigens DSM 30436
CPSY167879 ncbi Colwellia psychrerythraea 34H6
CJAP155077 Cellvibrio japonicus6
BVIE269482 ncbi Burkholderia vietnamiensis G45
BTHA271848 ncbi Burkholderia thailandensis E2645
BSP36773 Burkholderia sp.5
BPSE320373 ncbi Burkholderia pseudomallei 6685
BPSE320372 ncbi Burkholderia pseudomallei 1710b5
BPSE272560 ncbi Burkholderia pseudomallei K962435
BMAL320389 ncbi Burkholderia mallei NCTC 102475
BMAL320388 ncbi Burkholderia mallei SAVP15
BMAL243160 ncbi Burkholderia mallei ATCC 233445
BCEN331272 ncbi Burkholderia cenocepacia HI24245
BCEN331271 ncbi Burkholderia cenocepacia AU 10545
BAMB398577 ncbi Burkholderia ambifaria MC40-65
BAMB339670 ncbi Burkholderia ambifaria AMMD5
ASP62977 ncbi Acinetobacter sp. ADP16
ASP62928 ncbi Azoarcus sp. BH725
ASP232721 ncbi Acidovorax sp. JS425
ASAL382245 ncbi Aeromonas salmonicida salmonicida A4496
APLE434271 ncbi Actinobacillus pleuropneumoniae serovar 3 str. JL036
APLE416269 ncbi Actinobacillus pleuropneumoniae L206
AHYD196024 Aeromonas hydrophila dhakensis6
AEHR187272 ncbi Alkalilimnicola ehrlichii MLHE-15
ABOR393595 ncbi Alcanivorax borkumensis SK26
AAVE397945 ncbi Acidovorax citrulli AAC00-15


Names of the homologs of the genes in the group in each of these orgs
  G6581   G6580   EG11430   EG11345   EG11344   EG11314   
YPSE349747 YPSIP31758_1614YPSIP31758_1613YPSIP31758_2988YPSIP31758_1611YPSIP31758_1612YPSIP31758_1610
YPSE273123 YPTB2428YPTB2429YPTB2436YPTB2431YPTB2430YPTB2432
YPES386656 YPDSF_1808YPDSF_1809YPDSF_1816YPDSF_1811YPDSF_1810YPDSF_1812
YPES377628 YPN_1991YPN_1992YPN_1999YPN_1994YPN_1993YPN_1995
YPES360102 YPA_1884YPA_1885YPA_1892YPA_1887YPA_1886YPA_1888
YPES349746 YPANGOLA_A2849YPANGOLA_A2850YPANGOLA_A2857YPANGOLA_A2852YPANGOLA_A2851YPANGOLA_A2853
YPES214092 YPO1640YPO1639YPO1632YPO1637YPO1638YPO1636
YPES187410 Y1801Y1800Y1792Y1798Y1799Y1797
YENT393305 YE1724YE1723YE3022YE1721YE1722YE1720
XORY360094 XOOORF_5144XOOORF_2787XOOORF_2957XOOORF_2789XOOORF_2788XOOORF_2952
XORY342109 XOO4268XOO2414XOO1927XOO2416XOO2415XOO1930
XORY291331 XOO4531XOO2555XOO2046XOO2557XOO2556XOO2048
XFAS405440 XFASM12_0784XFASM12_0891XFASM12_0782XFASM12_0783XFASM12_0892
XFAS183190 PD_0663PD_0761PD_0661PD_0662PD_0762
XFAS160492 XF1441XF1552XF1439XF1440XF1553
XCAM487884 XCC-B100_0298XCC-B100_2264XCC-B100_2783XCC-B100_2262XCC-B100_2263XCC-B100_2781
XCAM316273 XCAORF_4237XCAORF_2244XCAORF_1754XCAORF_2242XCAORF_2243XCAORF_1757
XCAM314565 XC_0283XC_2220XC_2747XC_2222XC_2221XC_2744
XCAM190485 XCC0273XCC1965XCC1489XCC1963XCC1964XCC1492
XAXO190486 XAC0290XAC1999XAC1537XAC1997XAC1998XAC1539
VFIS312309 VF1776VF1592VF1785VF1784VF1786
TTUR377629 TERTU_1959TERTU_1958TERTU_1748TERTU_1750TERTU_1751TERTU_1749
TDEN292415 TBD_0853TBD_0852TBD_0585TBD_0851TBD_0518
TCRU317025 TCR_1100TCR_1132TCR_1098TCR_1099TCR_1137
STYP99287 STM1237STM1235STM1229STM1233STM1234STM1232
SSP94122 SHEWANA3_1749SHEWANA3_1748SHEWANA3_1744SHEWANA3_1746SHEWANA3_1747SHEWANA3_1745
SSON300269 SSO_1153SSO_1152SSO_1146SSO_1150SSO_1151SSO_1149
SSED425104 SSED_1882SSED_2716SSED_2408SSED_1880SSED_1881SSED_1879
SPRO399741 SPRO_2024SPRO_2023SPRO_2011SPRO_2021SPRO_2022SPRO_2020
SPEA398579 SPEA_2536SPEA_2537SPEA_2000SPEA_2539SPEA_2538SPEA_2540
SONE211586 SO_2630SO_2631SO_2636SO_2634SO_2633SO_2635
SLOI323850 SHEW_1562SHEW_1561SHEW_1557SHEW_1559SHEW_1560SHEW_1558
SHIGELLA YMFCS1236YCFDYCFCYCFBPURB
SHAL458817 SHAL_1717SHAL_1716SHAL_2301SHAL_1714SHAL_1715SHAL_1713
SGLO343509 SG1086SG1080SG1084SG1085SG1083
SFLE373384 SFV_1170SFV_1169SFV_1146SFV_1167SFV_1168SFV_1166
SFLE198214 AAN42771.1AAN42770.1AAN42748.1AAN42768.1AAN42769.1AAN42767.1
SENT454169 SEHA_C1354SEHA_C1352SEHA_C1346SEHA_C1350SEHA_C1351SEHA_C1349
SENT321314 SCH_1188SCH_1186SCH_1180SCH_1184SCH_1185SCH_1183
SENT295319 SPA1613SPA1615SPA1621SPA1617SPA1616SPA1618
SENT220341 STY1277STY1275STY1269STY1273STY1274STY1272
SENT209261 T1683T1685T1691T1687T1686T1688
SDYS300267 SDY_2017SDY_2018SDY_2024SDY_2020SDY_2019SDY_2021
SDEN318161 SDEN_1830SDEN_1825SDEN_1827SDEN_1828SDEN_1826
SDEG203122 SDE_1683SDE_1682SDE_1674SDE_1676SDE_1677SDE_1675
SBOY300268 SBO_1904SBO_1905SBO_1911SBO_1907SBO_1906SBO_1908
SBAL402882 SHEW185_2469SHEW185_2470SHEW185_2474SHEW185_2472SHEW185_2471SHEW185_2473
SBAL399599 SBAL195_2589SBAL195_2590SBAL195_2594SBAL195_2592SBAL195_2591SBAL195_2593
RMET266264 RMET_2896RMET_2959RMET_1072RMET_2958RMET_2956
REUT381666 H16_A3057H16_A3127H16_A1207H16_A3126H16_A3124
REUT264198 REUT_A2757REUT_A2822REUT_A1108REUT_A2821REUT_A2819
PSYR223283 PSPTO_4794PSPTO_3357PSPTO_3361PSPTO_3359PSPTO_3358PSPTO_3360
PSYR205918 PSYR_4336PSYR_3189PSYR_3193PSYR_3191PSYR_3190PSYR_3192
PSTU379731 PST_3719PST_2303PST_2307PST_2305PST_2304PST_2306
PPUT76869 PPUTGB1_4832PPUTGB1_3618PPUTGB1_3622PPUTGB1_3620PPUTGB1_3619PPUTGB1_3621
PPUT351746 PPUT_4654PPUT_1820PPUT_1816PPUT_1818PPUT_1819PPUT_1817
PPUT160488 PP_4778PP_4013PP_4017PP_4015PP_4014PP_4016
PPRO298386 PBPRA1148PBPRA1139PBPRA1146PBPRA1147PBPRA1145
PNAP365044 PNAP_1335PNAP_3803PNAP_1191PNAP_3817PNAP_3914
PMUL272843 PM1605PM1604PM0167PM1850PM1336PM1851
PMEN399739 PMEN_3745PMEN_2398PMEN_2403PMEN_2400PMEN_2399PMEN_2402
PLUM243265 PLU2802PLU2803PLU2809PLU2805PLU2804PLU2806
PING357804 PING_0982PING_0960PING_0962PING_0963PING_0961
PHAL326442 PSHAA1688PSHAA1693PSHAA1691PSHAA1690PSHAA1692
PFLU220664 PFL_5423PFL_3890PFL_3894PFL_3892PFL_3891PFL_3893
PFLU216595 PFLU5395PFLU3810PFLU3814PFLU3812PFLU3811PFLU3813
PFLU205922 PFL_4941PFL_3595PFL_3599PFL_3597PFL_3596PFL_3598
PENT384676 PSEEN4798PSEEN2201PSEEN2197PSEEN2199PSEEN2200PSEEN2198
PATL342610 PATL_2378PATL_2383PATL_2380PATL_2379PATL_2381
PAER208964 PA3968PA2625PA2630PA2627PA2626PA2629
PAER208963 PA14_12540PA14_30160PA14_30100PA14_30140PA14_30150PA14_30110
MSUC221988 MS2342MS2341MS0559MS0298MS0301MS0297
MSP400668 MMWYL1_3264MMWYL1_3269MMWYL1_3266MMWYL1_3265MMWYL1_3268
MFLA265072 MFLA_2138MFLA_2114MFLA_0982MFLA_2115MFLA_1819
MCAP243233 MCA_0548MCA_1786MCA_0201MCA_1785MCA_1784
MAQU351348 MAQU_1760MAQU_1761MAQU_1765MAQU_1763MAQU_1762MAQU_1764
KPNE272620 GKPORF_B0061GKPORF_B0060GKPORF_B4119GKPORF_B0058GKPORF_B0059GKPORF_B0057
JSP375286 MMA_2517MMA_0374MMA_1286MMA_0373MMA_0359
ILOI283942 IL1309IL1313IL1311IL1310IL1312
HSOM228400 HSM_1802HSM_1801HSM_0417HSM_1837HSM_0418
HSOM205914 HS_1640HS_1639HS_1594HS_1683HS_1593
HINF71421 HI_0694HI_0396HI_0638HI_0174HI_0639
HINF281310 NTHI0817NTHI0517NTHI0757NTHI0262NTHI0758
HDUC233412 HD_0337HD_1945HD_1650HD_0389HD_1649
HCHE349521 HCH_02335HCH_02334HCH_02330HCH_02332HCH_02333HCH_02331
HARS204773 HEAR2449HEAR0327HEAR2170HEAR0326HEAR0312
ESP42895 ENT638_1648ENT638_1647ENT638_1641ENT638_1645ENT638_1646ENT638_1644
EFER585054 EFER_1795EFER_1796EFER_1802EFER_1798EFER_1797EFER_1799
ECOO157 YMFCZ1863YCFDYCFCYCFBPURB
ECOL83334 ECS1607ECS1606ECS1573ECS1604ECS1605ECS1603
ECOL585397 ECED1_1279ECED1_1278ECED1_1272ECED1_1276ECED1_1277ECED1_1275
ECOL585057 ECIAI39_2002ECIAI39_2003ECIAI39_2028ECIAI39_2005ECIAI39_2004ECIAI39_2006
ECOL585056 ECUMN_1379ECUMN_1378ECUMN_1372ECUMN_1376ECUMN_1377ECUMN_1375
ECOL585055 EC55989_1248EC55989_1247EC55989_1241EC55989_1245EC55989_1246EC55989_1244
ECOL585035 ECS88_1150ECS88_1149ECS88_1143ECS88_1147ECS88_1148ECS88_1146
ECOL585034 ECIAI1_1173ECIAI1_1172ECIAI1_1166ECIAI1_1170ECIAI1_1171ECIAI1_1169
ECOL481805 ECOLC_2468ECOLC_2469ECOLC_2475ECOLC_2471ECOLC_2470ECOLC_2472
ECOL469008 ECBD_2464ECBD_2465ECBD_2471ECBD_2467ECBD_2466ECBD_2468
ECOL439855 ECSMS35_1990ECSMS35_1991ECSMS35_1997ECSMS35_1993ECSMS35_1992ECSMS35_1994
ECOL413997 ECB_01133ECB_01132ECB_01126ECB_01130ECB_01131ECB_01129
ECOL409438 ECSE_1201ECSE_1200ECSE_1194ECSE_1198ECSE_1199ECSE_1197
ECOL405955 APECO1_217APECO1_216APECO1_210APECO1_214APECO1_215APECO1_213
ECOL364106 UTI89_C1264UTI89_C1263UTI89_C1257UTI89_C1261UTI89_C1262UTI89_C1260
ECOL362663 ECP_1130ECP_1129ECP_1123ECP_1127ECP_1128ECP_1126
ECOL331111 ECE24377A_1298ECE24377A_1297ECE24377A_1291ECE24377A_1295ECE24377A_1296ECE24377A_1294
ECOL316407 ECK1121:JW1121:B1135ECK1120:JW1120:B1134ECK1114:JW1114:B1128ECK1118:JW5165:B1132ECK1119:JW1119:B1133ECK1117:JW1117:B1131
ECOL199310 C1514C1513C1480C1511C1512C1510
ECAR218491 ECA2440ECA2441ECA2447ECA2443ECA2442ECA2444
DNOD246195 DNO_0584DNO_0139DNO_0629DNO_0627DNO_0667
CVIO243365 CV_3663CV_3401CV_3581CV_3402CV_3834
CSAL290398 CSAL_2442CSAL_2443CSAL_2447CSAL_2445CSAL_2444CSAL_2446
CPSY167879 CPS_2898CPS_2899CPS_2133CPS_2901CPS_2900CPS_2902
CJAP155077 CJA_2572CJA_2484CJA_2493CJA_2491CJA_2490CJA_2492
BVIE269482 BCEP1808_2603BCEP1808_0664BCEP1808_2171BCEP1808_0663BCEP1808_0632
BTHA271848 BTH_I0758BTH_I1258BTH_I1910BTH_I1257BTH_I1221
BSP36773 BCEP18194_A5857BCEP18194_A3785BCEP18194_A5397BCEP18194_A3784BCEP18194_A3752
BPSE320373 BURPS668_0954BURPS668_3353BURPS668_2562BURPS668_3354BURPS668_3402
BPSE320372 BURPS1710B_A1168BURPS1710B_A3670BURPS1710B_A2930BURPS1710B_A3671BURPS1710B_A3715
BPSE272560 BPSL0895BPSL2888BPSL2255BPSL2889BPSL2928
BMAL320389 BMA10247_0134BMA10247_2545BMA10247_1450BMA10247_2544BMA10247_2627
BMAL320388 BMASAVP1_A0685BMASAVP1_A0279BMASAVP1_A2177BMASAVP1_A0278BMASAVP1_A0358
BMAL243160 BMA_0485BMA_2365BMA_1674BMA_2364BMA_2442
BCEN331272 BCEN2424_2525BCEN2424_0699BCEN2424_2091BCEN2424_0698BCEN2424_0666
BCEN331271 BCEN_1914BCEN_0215BCEN_5986BCEN_0214BCEN_0183
BAMB398577 BAMMC406_2444BAMMC406_0618BAMMC406_2001BAMMC406_0617BAMMC406_0587
BAMB339670 BAMB_2573BAMB_0592BAMB_2127BAMB_0591BAMB_0561
ASP62977 ACIAD1189ACIAD1222ACIAD1933ACIAD1220ACIAD1221ACIAD1219
ASP62928 AZO1101AZO2774AZO1099AZO2772AZO0901
ASP232721 AJS_2497AJS_4074AJS_1005AJS_4068AJS_4026
ASAL382245 ASA_1393ASA_1392ASA_1388ASA_1390ASA_1391ASA_1389
APLE434271 APJL_0088APJL_0344APJL_1826APJL_0832APJL_0159APJL_0831
APLE416269 APL_0088APL_0328APL_1790APL_0825APL_0158APL_0824
AHYD196024 AHA_1417AHA_1416AHA_1412AHA_1414AHA_1415AHA_1413
AEHR187272 MLG_1089MLG_1450MLG_1452MLG_1451MLG_1358
ABOR393595 ABO_1280ABO_1276ABO_1272ABO_1274ABO_1275ABO_1273
AAVE397945 AAVE_2287AAVE_4725AAVE_1332AAVE_4724AAVE_4669


Organism features enriched in list (features available for 130 out of the 136 orgs in the list)
Feature    Pvalue       Num occurrences in list  Total num occurrences  
Arrangment:Chains 0.0000104692
Disease:Bubonic_plague 0.000112266
Disease:Dysentery 0.000112266
Disease:Gastroenteritis 0.0097219713
Endospores:No 0.000057729211
GC_Content_Range4:0-40 2.621e-207213
GC_Content_Range4:40-60 2.316e-1081224
GC_Content_Range4:60-100 0.008099942145
GC_Content_Range7:30-40 1.997e-137166
GC_Content_Range7:50-60 3.647e-948107
GC_Content_Range7:60-70 0.001813942134
Genome_Size_Range5:0-2 4.801e-154155
Genome_Size_Range5:2-4 8.770e-820197
Genome_Size_Range5:4-6 2.675e-1883184
Genome_Size_Range5:6-10 0.00001772347
Genome_Size_Range9:1-2 1.914e-114128
Genome_Size_Range9:2-3 0.000190613120
Genome_Size_Range9:3-4 0.0008238777
Genome_Size_Range9:4-5 4.502e-63996
Genome_Size_Range9:5-6 2.533e-104488
Genome_Size_Range9:6-8 7.191e-72238
Gram_Stain:Gram_Neg 2.699e-24121333
Motility:No 4.191e-910151
Motility:Yes 6.548e-1090267
Oxygen_Req:Anaerobic 1.827e-75102
Oxygen_Req:Facultative 1.396e-974201
Pathogenic_in:No 0.000055632226
Pathogenic_in:Plant 0.00021261015
Shape:Coccus 6.067e-7382
Shape:Rod 8.400e-18117347
Shape:Spiral 0.0014836134
Temp._range:Mesophilic 0.0004086118473
Temp._range:Psychrophilic 0.004554669
Temp._range:Thermophilic 0.0011684135



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ORGANISMS CONTAINING AT MOST 1 GENES FROM THE GROUP:

Total number of orgs: 218
Effective number of orgs (counting one per cluster within 468 clusters): 188

Organism list
Homologs in each organism in the list
Features enriched in organism list


Follow (ncbi) link, when present, to find the set of organism features for each organism
Org ID  Org Name  # genes in group found in org  
ZMOB264203 ncbi Zymomonas mobilis mobilis ZM40
XAUT78245 ncbi Xanthobacter autotrophicus Py20
WSUC273121 ncbi Wolinella succinogenes DSM 17400
WPIP955 Wolbachia pipientis1
WPIP80849 Wolbachia endosymbiont of Brugia malayi1
UURE95667 Ureaplasma urealyticum serovar 131
UURE95664 Ureaplasma urealyticum serovar 101
UPAR505682 ncbi Ureaplasma parvum serovar 3 str. ATCC 278151
UMET351160 ncbi uncultured methanogenic archaeon RC-I0
TWHI218496 ncbi Tropheryma whipplei TW08/271
TWHI203267 ncbi Tropheryma whipplei Twist1
TVOL273116 ncbi Thermoplasma volcanium GSS11
TPEN368408 ncbi Thermofilum pendens Hrk 51
TPAL243276 ncbi Treponema pallidum pallidum Nichols0
TLET416591 ncbi Thermotoga lettingae TMO0
TKOD69014 ncbi Thermococcus kodakarensis KOD11
TFUS269800 ncbi Thermobifida fusca YX1
TDEN326298 ncbi Sulfurimonas denitrificans DSM 12510
TACI273075 ncbi Thermoplasma acidophilum DSM 17281
STRO369723 ncbi Salinispora tropica CNB-4401
SSP84588 ncbi Synechococcus sp. WH 81021
SSP64471 ncbi Synechococcus sp. CC93111
SSP387093 ncbi Sulfurovum sp. NBC37-10
SMEL266834 ncbi Sinorhizobium meliloti 10211
SMED366394 ncbi Sinorhizobium medicae WSM4191
SMAR399550 ncbi Staphylothermus marinus F11
SERY405948 ncbi Saccharopolyspora erythraea NRRL 23381
SCO ncbi Streptomyces coelicolor A3(2)1
SAVE227882 ncbi Streptomyces avermitilis MA-46801
SARE391037 ncbi Salinispora arenicola CNS-2051
RTYP257363 ncbi Rickettsia typhi Wilmington0
RSP101510 ncbi Rhodococcus jostii RHA10
RSAL288705 ncbi Renibacterium salmoninarum ATCC 332091
RRUB269796 ncbi Rhodospirillum rubrum ATCC 111701
RRIC452659 ncbi Rickettsia rickettsii Iowa0
RRIC392021 ncbi Rickettsia rickettsii Sheila Smith0
RPRO272947 ncbi Rickettsia prowazekii Madrid E0
RPAL316058 ncbi Rhodopseudomonas palustris HaA21
RPAL316057 ncbi Rhodopseudomonas palustris BisB50
RPAL316056 ncbi Rhodopseudomonas palustris BisB181
RPAL316055 ncbi Rhodopseudomonas palustris BisA531
RMAS416276 ncbi Rickettsia massiliae MTU50
RFEL315456 ncbi Rickettsia felis URRWXCal21
RCON272944 ncbi Rickettsia conorii Malish 71
RCAN293613 ncbi Rickettsia canadensis McKiel1
RBEL391896 ncbi Rickettsia bellii OSU 85-3891
RBEL336407 ncbi Rickettsia bellii RML369-C1
RAKA293614 ncbi Rickettsia akari Hartford0
PTOR263820 ncbi Picrophilus torridus DSM 97901
PSP117 Pirellula sp.1
PMAR93060 ncbi Prochlorococcus marinus MIT 92150
PMAR74546 ncbi Prochlorococcus marinus MIT 93120
PMAR59920 ncbi Prochlorococcus marinus NATL2A0
PMAR167555 ncbi Prochlorococcus marinus NATL1A0
PMAR167546 ncbi Prochlorococcus marinus MIT 93010
PMAR167542 ncbi Prochlorococcus marinus MIT 95150
PMAR167540 Prochlorococcus marinus pastoris MED4ax0
PMAR167539 ncbi Prochlorococcus marinus marinus CCMP13751
PMAR146891 ncbi Prochlorococcus marinus AS96010
PLUT319225 ncbi Chlorobium luteolum DSM 2731
PINT246198 Prevotella intermedia 171
PHOR70601 ncbi Pyrococcus horikoshii OT31
PGIN242619 ncbi Porphyromonas gingivalis W831
PFUR186497 ncbi Pyrococcus furiosus DSM 36381
PAST100379 Onion yellows phytoplasma1
PACN267747 ncbi Propionibacterium acnes KPA1712021
PABY272844 ncbi Pyrococcus abyssi GE51
OTSU357244 ncbi Orientia tsutsugamushi Boryong0
OCAR504832 ncbi Oligotropha carboxidovorans OM51
NSP387092 ncbi Nitratiruptor sp. SB155-20
NSP35761 Nocardioides sp.1
NSEN222891 ncbi Neorickettsia sennetsu Miyayama1
NPHA348780 ncbi Natronomonas pharaonis DSM 21601
NFAR247156 ncbi Nocardia farcinica IFM 101520
MVAN350058 ncbi Mycobacterium vanbaalenii PYR-10
MTUB419947 ncbi Mycobacterium tuberculosis H37Ra0
MTUB336982 ncbi Mycobacterium tuberculosis F110
MTHE349307 ncbi Methanosaeta thermophila PT1
MTBRV ncbi Mycobacterium tuberculosis H37Rv0
MTBCDC ncbi Mycobacterium tuberculosis CDC15510
MSYN262723 ncbi Mycoplasma synoviae 531
MSTA339860 ncbi Methanosphaera stadtmanae DSM 30911
MSP409 Methylobacterium sp.0
MSP266779 ncbi Chelativorans sp. BNC11
MSP189918 ncbi Mycobacterium sp. KMS1
MSP164757 ncbi Mycobacterium sp. JLS1
MSP164756 ncbi Mycobacterium sp. MCS1
MSME246196 ncbi Mycobacterium smegmatis MC2 1550
MSED399549 ncbi Metallosphaera sedula DSM 53481
MPUL272635 ncbi Mycoplasma pulmonis UAB CTIP1
MPNE272634 ncbi Mycoplasma pneumoniae M1290
MPEN272633 ncbi Mycoplasma penetrans HF-21
MMYC272632 ncbi Mycoplasma mycoides mycoides SC str. PG11
MMOB267748 ncbi Mycoplasma mobile 163K1
MMAZ192952 ncbi Methanosarcina mazei Go11
MMAR444158 ncbi Methanococcus maripaludis C61
MMAR426368 ncbi Methanococcus maripaludis C71
MMAR402880 ncbi Methanococcus maripaludis C50
MMAR394221 ncbi Maricaulis maris MCS101
MMAR368407 ncbi Methanoculleus marisnigri JR10
MMAR267377 ncbi Methanococcus maripaludis S21
MLEP272631 ncbi Mycobacterium leprae TN0
MLAB410358 ncbi Methanocorpusculum labreanum Z0
MKAN190192 ncbi Methanopyrus kandleri AV191
MJAN243232 ncbi Methanocaldococcus jannaschii DSM 26611
MHYO295358 ncbi Mycoplasma hyopneumoniae 2321
MHYO262722 ncbi Mycoplasma hyopneumoniae 74481
MHYO262719 ncbi Mycoplasma hyopneumoniae J1
MHUN323259 ncbi Methanospirillum hungatei JF-11
MGIL350054 ncbi Mycobacterium gilvum PYR-GCK0
MGEN243273 ncbi Mycoplasma genitalium G371
MFLO265311 ncbi Mesoplasma florum L11
MEXT419610 ncbi Methylobacterium extorquens PA10
MCAP340047 ncbi Mycoplasma capricolum capricolum ATCC 273431
MBUR259564 ncbi Methanococcoides burtonii DSM 62420
MBOV410289 ncbi Mycobacterium bovis BCG str. Pasteur 1173P20
MBOV233413 ncbi Mycobacterium bovis AF2122/970
MBAR269797 ncbi Methanosarcina barkeri Fusaro1
MAVI243243 ncbi Mycobacterium avium 1040
MART243272 ncbi Mycoplasma arthritidis 158L3-11
MAEO419665 ncbi Methanococcus aeolicus Nankai-31
MACE188937 ncbi Methanosarcina acetivorans C2A1
MABS561007 ncbi Mycobacterium abscessus ATCC 199770
LINT267671 ncbi Leptospira interrogans serovar Copenhageni str. Fiocruz L1-1300
LINT189518 ncbi Leptospira interrogans serovar Lai str. 566010
LBOR355277 ncbi Leptospira borgpetersenii serovar Hardjo-bovis JB1970
LBOR355276 ncbi Leptospira borgpetersenii serovar Hardjo-bovis L5500
LBIF355278 ncbi Leptospira biflexa serovar Patoc strain Patoc 1 (Ames)1
HWAL362976 ncbi Haloquadratum walsbyi DSM 167901
HSP64091 ncbi Halobacterium sp. NRC-11
HSAL478009 ncbi Halobacterium salinarum R11
HPYL85963 ncbi Helicobacter pylori J990
HPYL357544 ncbi Helicobacter pylori HPAG10
HPY ncbi Helicobacter pylori 266950
HNEP81032 Hyphomonas neptunium1
HMUK485914 ncbi Halomicrobium mukohataei DSM 122861
HMAR272569 ncbi Haloarcula marismortui ATCC 430491
HHEP235279 ncbi Helicobacter hepaticus ATCC 514490
HBUT415426 ncbi Hyperthermus butylicus DSM 54561
HACI382638 ncbi Helicobacter acinonychis Sheeba0
GOXY290633 ncbi Gluconobacter oxydans 621H1
FNOD381764 ncbi Fervidobacterium nodosum Rt17-B10
FMAG334413 ncbi Finegoldia magna ATCC 293281
ERUM302409 ncbi Ehrlichia ruminantium Gardel0
ERUM254945 ncbi Ehrlichia ruminantium Welgevonden0
ELIT314225 ncbi Erythrobacter litoralis HTCC25941
ECHA205920 ncbi Ehrlichia chaffeensis Arkansas0
ECAN269484 ncbi Ehrlichia canis Jake0
DSP255470 ncbi Dehalococcoides sp. CBDB11
DSP216389 ncbi Dehalococcoides sp. BAV11
DPSY177439 ncbi Desulfotalea psychrophila LSv540
DOLE96561 ncbi Desulfococcus oleovorans Hxd31
DETH243164 ncbi Dehalococcoides ethenogenes 1951
DDES207559 ncbi Desulfovibrio desulfuricans desulfuricans G201
CTRA471473 ncbi Chlamydia trachomatis L2b/UCH-1/proctitis1
CTRA471472 ncbi Chlamydia trachomatis 434/Bu1
CTEP194439 ncbi Chlorobium tepidum TLS1
CSUL444179 ncbi Candidatus Sulcia muelleri GWSS0
CSP78 Caulobacter sp.0
CPNE182082 ncbi Chlamydophila pneumoniae TW-1831
CPNE138677 ncbi Chlamydophila pneumoniae J1381
CPNE115713 ncbi Chlamydophila pneumoniae CWL0291
CPNE115711 ncbi Chlamydophila pneumoniae AR391
CPHY357809 ncbi Clostridium phytofermentans ISDg1
CPEL335992 ncbi Candidatus Pelagibacter ubique HTCC10620
CMUR243161 ncbi Chlamydia muridarum Nigg1
CMIC443906 ncbi Clavibacter michiganensis michiganensis NCPPB 3821
CMIC31964 ncbi Clavibacter michiganensis sepedonicus1
CMET456442 ncbi Candidatus Methanoregula boonei 6A80
CMAQ397948 ncbi Caldivirga maquilingensis IC-1671
CJEJ407148 ncbi Campylobacter jejuni jejuni 811161
CJEJ360109 ncbi Campylobacter jejuni doylei 269.971
CJEJ354242 ncbi Campylobacter jejuni jejuni 81-1761
CJEJ195099 ncbi Campylobacter jejuni RM12211
CJEJ192222 ncbi Campylobacter jejuni jejuni NCTC 111681
CJEI306537 ncbi Corynebacterium jeikeium K4110
CHUT269798 ncbi Cytophaga hutchinsonii ATCC 334061
CHOM360107 ncbi Campylobacter hominis ATCC BAA-3810
CGLU196627 ncbi Corynebacterium glutamicum ATCC 130321
CFET360106 ncbi Campylobacter fetus fetus 82-400
CFEL264202 ncbi Chlamydophila felis Fe/C-561
CEFF196164 ncbi Corynebacterium efficiens YS-3140
CDIP257309 ncbi Corynebacterium diphtheriae NCTC 131290
CDES477974 ncbi Candidatus Desulforudis audaxviator MP104C1
CCUR360105 ncbi Campylobacter curvus 525.920
CCON360104 ncbi Campylobacter concisus 138260
CCHL340177 ncbi Chlorobium chlorochromatii CaD31
CCAV227941 ncbi Chlamydophila caviae GPIC1
CBEI290402 ncbi Clostridium beijerinckii NCIMB 80521
CACE272562 ncbi Clostridium acetobutylicum ATCC 8241
CABO218497 ncbi Chlamydophila abortus S26/31
BXEN266265 ncbi Burkholderia xenovorans LB4000
BTUR314724 ncbi Borrelia turicatae 91E1350
BTRI382640 ncbi Bartonella tribocorum CIP 1054760
BSP376 Bradyrhizobium sp.0
BQUI283165 ncbi Bartonella quintana Toulouse1
BMEL224914 ncbi Brucella melitensis bv. 1 str. 16M1
BLON206672 ncbi Bifidobacterium longum NCC27051
BJAP224911 ncbi Bradyrhizobium japonicum USDA 1100
BHER314723 ncbi Borrelia hermsii DAH0
BHEN283166 ncbi Bartonella henselae Houston-10
BGAR290434 ncbi Borrelia garinii PBi1
BBUR224326 ncbi Borrelia burgdorferi B311
BBAC360095 ncbi Bartonella bacilliformis KC5831
BAPH372461 ncbi Buchnera aphidicola Cc (Cinara cedri)1
BAFZ390236 ncbi Borrelia afzelii PKo1
AYEL322098 ncbi Aster yellows witches-broom phytoplasma AYWB1
AURANTIMONAS Aurantimonas manganoxydans SI85-9A10
APHA212042 ncbi Anaplasma phagocytophilum HZ0
APER272557 ncbi Aeropyrum pernix K11
AMAR234826 ncbi Anaplasma marginale St. Maries0
ALAI441768 ncbi Acholeplasma laidlawii PG-8A1
AFUL224325 ncbi Archaeoglobus fulgidus DSM 43041
ACRY349163 ncbi Acidiphilium cryptum JF-51
ACEL351607 ncbi Acidothermus cellulolyticus 11B1
ACAU438753 ncbi Azorhizobium caulinodans ORS 5710
ABUT367737 ncbi Arcobacter butzleri RM40181
AAUR290340 ncbi Arthrobacter aurescens TC11


Names of the homologs of the genes in the group in each of these orgs
  G6581   G6580   EG11430   EG11345   EG11344   EG11314   
ZMOB264203
XAUT78245
WSUC273121
WPIP955 WD_0786
WPIP80849 WB_0756
UURE95667 UU402
UURE95664 UUR10_0445
UPAR505682 UPA3_0418
UMET351160
TWHI218496 TW0766
TWHI203267 TW791
TVOL273116 TVN0999
TPEN368408 TPEN_1656
TPAL243276
TLET416591
TKOD69014 TK0561
TFUS269800 TFU_2940
TDEN326298
TACI273075 TA0523
STRO369723 STROP_1928
SSP84588 SYNW0685OR1968
SSP64471 GSYN0969
SSP387093
SMEL266834 SMC00508
SMED366394 SMED_1492
SMAR399550 SMAR_1194
SERY405948 SACE_5237
SCO SCO5637
SAVE227882 SAV3990
SARE391037 SARE_1919
RTYP257363
RSP101510
RSAL288705 RSAL33209_0629
RRUB269796 RRU_A1939
RRIC452659
RRIC392021
RPRO272947
RPAL316058 RPB_3693
RPAL316057
RPAL316056 RPC_1610
RPAL316055 RPE_1640
RMAS416276
RFEL315456 RF_0496
RCON272944 RC0410
RCAN293613 A1E_04020
RBEL391896 A1I_06190
RBEL336407 RBE_0321
RAKA293614
PTOR263820 PTO0816
PSP117 RB6554
PMAR93060
PMAR74546
PMAR59920
PMAR167555
PMAR167546
PMAR167542
PMAR167540
PMAR167539 PRO_1114
PMAR146891
PLUT319225 PLUT_0318
PINT246198 PIN_A1153
PHOR70601 PH0852
PGIN242619 PG_1123
PFUR186497 PF0667
PAST100379 PAM125
PACN267747 PPA1385
PABY272844 PAB0829
OTSU357244
OCAR504832 OCAR_6928
NSP387092
NSP35761 NOCA_2497
NSEN222891 NSE_0059
NPHA348780 NP1658A
NFAR247156
MVAN350058
MTUB419947
MTUB336982
MTHE349307 MTHE_1218
MTBRV
MTBCDC
MSYN262723 MS53_0375
MSTA339860 MSP_1247
MSP409
MSP266779 MESO_1285
MSP189918 MKMS_5339
MSP164757 MJLS_5630
MSP164756 MMCS_5250
MSME246196
MSED399549 MSED_0018
MPUL272635 MYPU_5580
MPNE272634
MPEN272633 MYPE8250
MMYC272632 MSC_0447
MMOB267748 MMOB4400
MMAZ192952 MM0920
MMAR444158 MMARC6_1684
MMAR426368 MMARC7_0216
MMAR402880
MMAR394221 MMAR10_1036
MMAR368407
MMAR267377 MMP0971
MLEP272631
MLAB410358
MKAN190192 MK1085
MJAN243232 MJ_0929
MHYO295358 MHP433
MHYO262722 MHP7448_0430
MHYO262719 MHJ_0428
MHUN323259 MHUN_0824
MGIL350054
MGEN243273 MG_295
MFLO265311 MFL412
MEXT419610
MCAP340047 MCAP_0523
MBUR259564
MBOV410289
MBOV233413
MBAR269797 MBAR_A0697
MAVI243243
MART243272 MART0166
MAEO419665 MAEO_0986
MACE188937 MA3990
MABS561007
LINT267671
LINT189518
LBOR355277
LBOR355276
LBIF355278 LBF_1287
HWAL362976 HQ1662A
HSP64091 VNG0415G
HSAL478009 OE1623F
HPYL85963
HPYL357544
HPY
HNEP81032 HNE_1378
HMUK485914 HMUK_3158
HMAR272569 RRNAC0192
HHEP235279
HBUT415426 HBUT_1424
HACI382638
GOXY290633 GOX2299
FNOD381764
FMAG334413 FMG_1586
ERUM302409
ERUM254945
ELIT314225 ELI_07615
ECHA205920
ECAN269484
DSP255470 CBDBA767
DSP216389 DEHABAV1_0715
DPSY177439
DOLE96561 DOLE_1854
DETH243164 DET_0789
DDES207559 DDE_1958
CTRA471473 CTLON_0535
CTRA471472 CTL0539
CTEP194439 CT_0989
CSUL444179
CSP78
CPNE182082 CPB0453
CPNE138677 CPJ0438
CPNE115713 CPN0438
CPNE115711 CP_0315
CPHY357809 CPHY_2905
CPEL335992
CMUR243161 TC_0560
CMIC443906 CMM_2950
CMIC31964 CMS3085
CMET456442
CMAQ397948 CMAQ_0020
CJEJ407148 C8J_0022
CJEJ360109 JJD26997_0025
CJEJ354242 CJJ81176_0050
CJEJ195099 CJE_0023
CJEJ192222 CJ0023
CJEI306537
CHUT269798 CHU_1563
CHOM360107
CGLU196627 CG1615
CFET360106
CFEL264202 CF0653
CEFF196164
CDIP257309
CDES477974 DAUD_1196
CCUR360105
CCON360104
CCHL340177 CAG_0254
CCAV227941 CCA_00354
CBEI290402 CBEI_1100
CACE272562 CAC2233
CABO218497 CAB345
BXEN266265
BTUR314724
BTRI382640
BSP376
BQUI283165 BQ07450
BMEL224914 BMEI1117
BLON206672 BL1800
BJAP224911
BHER314723
BHEN283166
BGAR290434 BG0705
BBUR224326 BB_0682
BBAC360095 BARBAKC583_0857
BAPH372461 BCC_166
BAFZ390236 BAPKO_0726
AYEL322098 AYWB_597
AURANTIMONAS
APHA212042
APER272557 APE2080
AMAR234826
ALAI441768 ACL_0559
AFUL224325 AF_2242
ACRY349163 ACRY_3019
ACEL351607 ACEL_1236
ACAU438753
ABUT367737 ABU_0485
AAUR290340 AAUR_3897


Organism features enriched in list (features available for 204 out of the 218 orgs in the list)
Feature    Pvalue       Num occurrences in list  Total num occurrences  
Arrangment:Chains 3.326e-61492
Arrangment:Clusters 0.0055565117
Arrangment:Pairs 1.218e-815112
Arrangment:Singles 0.0056009113286
Disease:Pharyngitis 0.000205388
Disease:bronchitis_and_pneumonitis 0.000205388
Endospores:No 8.197e-8103211
Endospores:Yes 0.00842051153
GC_Content_Range4:0-40 0.000529592213
GC_Content_Range4:40-60 0.000043657224
GC_Content_Range7:0-30 0.00006462947
GC_Content_Range7:50-60 0.000026320107
Genome_Size_Range5:0-2 7.948e-23105155
Genome_Size_Range5:2-4 0.001647854197
Genome_Size_Range5:4-6 9.129e-1033184
Genome_Size_Range9:0-1 4.820e-72227
Genome_Size_Range9:1-2 3.389e-1583128
Genome_Size_Range9:2-3 0.008424632120
Genome_Size_Range9:4-5 0.00002911796
Genome_Size_Range9:5-6 0.00010211688
Genome_Size_Range9:6-8 0.0043462638
Gram_Stain:Gram_Neg 0.0042447103333
Habitat:Host-associated 0.001904787206
Habitat:Multiple 0.000622846178
Motility:No 0.007000764151
Motility:Yes 0.004495680267
Optimal_temp.:37 0.001456150106
Oxygen_Req:Anaerobic 0.001913448102
Oxygen_Req:Facultative 3.008e-1332201
Oxygen_Req:Microaerophilic 0.00425281218
Shape:Coccus 0.00019941582
Shape:Irregular_coccus 3.863e-71617
Shape:Rod 2.539e-793347
Shape:Sphere 9.811e-61619
Shape:Spiral 6.350e-92834



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ORGANISMS ENRICHED FOR GROUP:




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ORGANISMS DEPLETED FOR GROUP:




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PHYLOGENETIC PROFILE SIMILARITY WITH KNOWN PATHWAYS:

Pathways or complexes with absolute value of Pearson coefficient with respect to candidate larger than 0.4 are listed below
The candidate is assumed to exist in orgs listed in section List of organisms containing most genes from the group


Pathway or complex  # Orgs containing it  # of those orgs also containing candidate  Pearson Coeff  
AST-PWY (arginine degradation II (AST pathway))120890.6188
PWY0-1241 (ADP-L-glycero-β-D-manno-heptose biosynthesis)2181220.6062
GLYCOCAT-PWY (glycogen degradation I)2461280.5906
COBALSYN-PWY (adenosylcobalamin salvage from cobinamide I)1951130.5902
KDO-LIPASYN-PWY (KDO2-lipid A biosynthesis I)2251170.5491
GLUCONSUPER-PWY (D-gluconate degradation)2291170.5400
PWY-5755 (4-hydroxybenzoate biosynthesis II (bacteria and fungi))81640.5351
LIPA-CORESYN-PWY (Lipid A-core biosynthesis)1761000.5315
ENTNER-DOUDOROFF-PWY (Entner-Doudoroff pathway I)2491210.5287
GLYCOLYSIS-E-D (superpathway of glycolysis and Entner-Doudoroff)2491210.5287
PWY-5111 (CMP-KDO biosynthesis II (from D-arabinose 5-phosphate))3001330.5250
GALACTITOLCAT-PWY (galactitol degradation)73590.5203
PWY0-1182 (trehalose degradation II (trehalase))70570.5133
PWY0-981 (taurine degradation IV)106720.5053
PWY-5148 (acyl-CoA hydrolysis)2271120.5042
PWY-4041 (γ-glutamyl cycle)2791250.5008
PWY-5918 (heme biosynthesis I)2721230.4985
PWY4FS-7 (phosphatidylglycerol biosynthesis I (plastidic))2911270.4944
ECASYN-PWY (enterobacterial common antigen biosynthesis)1911000.4914
PHOSLIPSYN-PWY (phospholipid biosynthesis I)2901260.4884
PWY0-1319 (CDP-diacylglycerol biosynthesis II)2961270.4854
PWY-5386 (methylglyoxal degradation I)3051290.4852
PWY0-1329 (succinate to cytochrome bo oxidase electron transfer)96660.4848
PWY-1269 (CMP-KDO biosynthesis I)3251330.4827
HEME-BIOSYNTHESIS-II (heme biosynthesis from uroporphyrinogen-III I)2861240.4801
GLUCARDEG-PWY (D-glucarate degradation I)152850.4688
3-HYDROXYPHENYLACETATE-DEGRADATION-PWY (4-hydroxyphenylacetate degradation)149830.4598
PWY-5861 (superpathway of demethylmenaquinone-8 biosynthesis)50430.4589
P184-PWY (protocatechuate degradation I (meta-cleavage pathway))94620.4503
NAGLIPASYN-PWY (lipid IVA biosynthesis)3481330.4463
PWY-5913 (TCA cycle variation IV)3011230.4455
GLUTATHIONESYN-PWY (glutathione biosynthesis)3391310.4447
LIPASYN-PWY (phospholipases)212990.4324
PWY0-845 (superpathway of pyridoxal 5'-phosphate biosynthesis and salvage)3291260.4217
PWY0-1335 (NADH to cytochrome bo oxidase electron transfer)112660.4204
PWY-6196 (serine racemization)102620.4172
GLUCARGALACTSUPER-PWY (superpathway of D-glucarate and D-galactarate degradation)135730.4105
PWY-46 (putrescine biosynthesis III)138740.4105
PWY-5857 (ubiquinone-10 biosynthesis (prokaryotic))183880.4099
PWY0-901 (selenocysteine biosynthesis I (bacteria))2301010.4090
BETSYN-PWY (glycine betaine biosynthesis I (Gram-negative bacteria))138730.4012
CHOLINE-BETAINE-ANA-PWY (choline degradation I)135720.4011
KDOSYN-PWY (KDO transfer to lipid IVA I)180860.4004



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PAIRWISE GENOME CONTEXT SCORE MATRIX:

  G6580   EG11430   EG11345   EG11344   EG11314   
G65810.9990270.9985170.9991960.9991380.998744
G65800.9989620.9994720.9996640.999339
EG114300.9993810.999210.999432
EG113450.9996960.999664
EG113440.999611
EG11314



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PAIRWISE BLAST SCORES:

  G6581   G6580   EG11430   EG11345   EG11344   EG11314   
G65810.0f0-----
G6580-0.0f0----
EG11430--0.0f0---
EG11345---0.0f0--
EG11344----0.0f0-
EG11314-----0.0f0



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PATHWAYS OR PROTEIN COMPLEX MATCHES IN TARGET ORG:

For each case, all genes involved in the pathway or complex are listed. For each gene we list: a tag indicating whether the gene is part of the candidate list or not, the average and the minimum scores of the gene to the candidate list, the gene name, and its product names.



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GENOME CONTEXT INFORMATION:

Each row corresponds to a replicon in an organism, each column to a gene in the candidate. The second column indicates whether the organims was included in the list used to compute the genome context scores or not. Some organisms are not included because they are phylogenetically too similar to others already in the list.
The number in the matrix indicate the position of the homolog of the gene in the replicon. All numbers are relative to the smaller one, which is assigned a position of zero. Two columns with the same number indicate that the two genes matched the same gene in that organism.

Genome browser links for gene clusters

The links below opens a genome browser BioCyc page for each cluster of genes in the target genome. These pages shows the central gene of the cluster in the target genome and its best homolog in the reference genomes, for the genomes that contain homologs for at least 75% of the genes in the group. Only one genome per phylogenetic cluster of organisms is shown, to keep the list smaller.

EG11314 EG11344 EG11345 EG11430 G6580 G6581 (centered at EG11344)


ORG:REPLICON:CIRC?\GENE  IN REF LIST  G6581   G6580   EG11430   EG11345   EG11344   EG11314   
336/623233/623161/623124/623387/623407/623
AAEO224324:0:Tyes9220---315
AAUR290340:2:Tyes-----0
AAVE397945:0:Tyes94233340-33333281
ABAC204669:0:Tyes2800---1613
ABAU360910:0:Tyes--449-30
ABOR393595:0:Tyes840231
ABUT367737:0:Tyes----0-
ACEL351607:0:Tyes0-----
ACRY349163:8:Tyes-----0
ADEH290397:0:Tyes-677---0
AEHR187272:0:Tyes0358-360359266
AFER243159:0:Tyes-175-136215940
AFUL224325:0:Tyes-----0
AHYD196024:0:Tyes540231
ALAI441768:0:Tyes----0-
AMAR329726:9:Tyes3415-0-36123222
AMET293826:0:Tyes0---996-
ANAE240017:0:Tyes-0---137
AORE350688:0:Tyes687---0-
APER272557:0:Tyes-0----
APLE416269:0:Tyes0242174473970738
APLE434271:0:Tno0248174971169710
ASAL382245:5:Tyes540231
ASP1667:3:Tyes-0---3251
ASP232721:2:Tyes143829900-29842941
ASP62928:0:Tyes2141912211-19100
ASP62977:0:Tyes032708303129
ASP76114:2:Tyes0169--167425
AVAR240292:3:Tyes0---3722-
AYEL322098:4:Tyes----0-
BABO262698:1:Tno-0---168
BAFZ390236:2:Fyes----0-
BAMB339670:3:Tno2065321605-310
BAMB398577:3:Tno1885311432-300
BAMY326423:0:Tyes1442---17730
BANT260799:0:Tno1136---40240
BANT261594:2:Tno----39950
BANT568206:2:Tyes2726---42200
BANT592021:2:Tno1157---42090
BAPH198804:0:Tyes----01
BAPH372461:0:Tyes----0-
BBAC264462:0:Tyes1224254---0
BBAC360095:0:Tyes-----0
BBRO257310:0:Tyes--0-300303
BBUR224326:21:Fno----0-
BCAN483179:1:Tno-0---174
BCEN331271:0:Tno--0---
BCEN331271:2:Tno175733--320
BCEN331272:3:Tyes1856331423-320
BCER226900:1:Tyes11293278--39830
BCER288681:0:Tno----38880
BCER315749:1:Tyes8863108--27000
BCER405917:1:Tyes----39390
BCER572264:1:Tno1106---40490
BCIC186490:0:Tyes----01
BCLA66692:0:Tyes250---0-
BFRA272559:1:Tyes----02423
BFRA295405:0:Tno----02648
BGAR290434:2:Fyes----0-
BHAL272558:0:Tyes974---6550
BLIC279010:0:Tyes17203531--21200
BLON206672:0:Tyes-----0
BMAL243160:1:Tno016591033-16581726
BMAL320388:1:Tno40411857-080
BMAL320389:1:Tyes023561284-23552438
BMEL224914:1:Tno-----0
BMEL359391:1:Tno-0---162
BOVI236:1:Tyes-0---161
BPAR257311:0:Tno--0-232235
BPER257313:0:Tyes--0-11961193
BPET94624:0:Tyes--767-30
BPSE272560:1:Tyes020091366-20102049
BPSE320372:1:Tno023791655-23802424
BPSE320373:1:Tno023051550-23062354
BPUM315750:0:Tyes1452---17910
BQUI283165:0:Tyes-----0
BSP107806:2:Tyes---102
BSP36773:2:Tyes2147341678-330
BSUB:0:Tyes1764---22080
BSUI204722:1:Tyes-0---175
BSUI470137:1:Tno-0---182
BTHA271848:1:Tno04921128-491455
BTHE226186:0:Tyes----03791
BTHU281309:1:Tno1077---38340
BTHU412694:1:Tno1024---35510
BVIE269482:7:Tyes1954321529-310
BWEI315730:4:Tyes1150---39110
CABO218497:0:Tyes----0-
CACE272562:1:Tyes----0-
CAULO:0:Tyes036----
CBEI290402:0:Tyes----0-
CBLO203907:0:Tyes----01
CBLO291272:0:Tno----01
CBOT36826:1:Tno0---1101-
CBOT441770:0:Tyes0---1098-
CBOT441771:0:Tno0---1022-
CBOT441772:1:Tno0---1122-
CBOT498213:1:Tno0---1182-
CBOT508765:1:Tyes501---0-
CBOT515621:2:Tyes0---1151-
CBOT536232:0:Tno01197--1296-
CBUR227377:1:Tyes----3020
CBUR360115:1:Tno----1580
CBUR434922:2:Tno----3410
CCAV227941:1:Tyes----0-
CCHL340177:0:Tyes----0-
CDES477974:0:Tyes0-----
CDIF272563:1:Tyes0---906-
CFEL264202:1:Tyes----0-
CGLU196627:0:Tyes0-----
CHUT269798:0:Tyes-----0
CHYD246194:0:Tyes843---10960
CJAP155077:0:Tyes8709768
CJEJ192222:0:Tyes-----0
CJEJ195099:0:Tno-----0
CJEJ354242:2:Tyes-----0
CJEJ360109:0:Tyes-----0
CJEJ407148:0:Tno-----0
CKLU431943:1:Tyes474---0-
CKOR374847:0:Tyes-0---1026
CMAQ397948:0:Tyes-----0
CMIC31964:2:Tyes-----0
CMIC443906:2:Tyes-----0
CMUR243161:1:Tyes----0-
CNOV386415:0:Tyes0---189-
CPER195102:1:Tyes0---704-
CPER195103:0:Tno0---687-
CPER289380:3:Tyes0---598-
CPHY357809:0:Tyes----0-
CPNE115711:1:Tyes----0-
CPNE115713:0:Tno----0-
CPNE138677:0:Tno----0-
CPNE182082:0:Tno----0-
CPRO264201:0:Fyes-0--1340-
CPSY167879:0:Tyes7407410743742744
CRUT413404:0:Tyes---10231
CSAL290398:0:Tyes015324
CSP501479:6:Fyes0-----
CSP501479:8:Fyes-----0
CTEP194439:0:Tyes-----0
CTET212717:0:Tyes0---132-
CTRA471472:0:Tyes----0-
CTRA471473:0:Tno----0-
CVES412965:0:Tyes---10188
CVIO243365:0:Tyes2750193-1447
DARO159087:0:Tyes041--3936
DDES207559:0:Tyes0-----
DETH243164:0:Tyes0-----
DGEO319795:1:Tyes-1340--1040
DHAF138119:0:Tyes18840---3544
DNOD246195:0:Tyes4350-478477517
DOLE96561:0:Tyes-----0
DRAD243230:3:Tyes3450--1190-
DRED349161:0:Tyes372---01603
DSHI398580:5:Tyes1073----0
DSP216389:0:Tyes0-----
DSP255470:0:Tno0-----
DVUL882:1:Tyes0570----
ECAR218491:0:Tyes017324
ECOL199310:0:Tno34330313230
ECOL316407:0:Tno760453
ECOL331111:6:Tno760453
ECOL362663:0:Tno760453
ECOL364106:1:Tno760453
ECOL405955:2:Tyes760453
ECOL409438:6:Tyes760453
ECOL413997:0:Tno760453
ECOL439855:4:Tno017324
ECOL469008:0:Tno017324
ECOL481805:0:Tno017324
ECOL585034:0:Tno760453
ECOL585035:0:Tno760453
ECOL585055:0:Tno760453
ECOL585056:2:Tno760453
ECOL585057:0:Tno0125324
ECOL585397:0:Tno760453
ECOL83334:0:Tno34330313230
ECOLI:0:Tno760453
ECOO157:0:Tno29280262725
EFAE226185:3:Tyes053--480760
EFER585054:1:Tyes017324
ELIT314225:0:Tyes0-----
ESP42895:1:Tyes760453
FALN326424:0:Tyes0205---4316
FJOH376686:0:Tyes0---23474971
FMAG334413:1:Tyes----0-
FNUC190304:0:Tyes0---9-
FPHI484022:1:Tyes-0--367-
FRANT:0:Tno-0--1196-
FSP106370:0:Tyes01771---2914
FSP1855:0:Tyes47777023---0
FSUC59374:0:Tyes0---491-
FTUL351581:0:Tno-346--0-
FTUL393011:0:Tno-317--0-
FTUL393115:0:Tyes-0--1176-
FTUL401614:0:Tyes-371--0-
FTUL418136:0:Tno-0--205-
FTUL458234:0:Tno-343--0-
GBET391165:0:Tyes0----1199
GFOR411154:0:Tyes862---11300
GKAU235909:1:Tyes0686--280-
GMET269799:1:Tyes10100--6701749
GOXY290633:5:Tyes-----0
GSUL243231:0:Tyes12400--24031468
GTHE420246:1:Tyes19372625--22180
GURA351605:0:Tyes110---0569
GVIO251221:0:Tyes838---0-
HARS204773:0:Tyes2010131744-120
HAUR316274:2:Tyes0722--562475
HBUT415426:0:Tyes-0----
HCHE349521:0:Tyes540231
HDUC233412:0:Tyes0-13941140451139
HHAL349124:0:Tyes556--138913880
HINF281310:0:Tyes512-2304540455
HINF374930:0:Tyes1335-01402-1401
HINF71421:0:Tno509-2134530454
HMAR272569:8:Tyes-----0
HMOD498761:0:Tyes31---01265
HMUK485914:1:Tyes-----0
HNEP81032:0:Tyes0-----
HSAL478009:4:Tyes-----0
HSOM205914:1:Tyes4746-1900
HSOM228400:0:Tno14011400-014341
HSP64091:2:Tno-----0
HWAL362976:1:Tyes-----0
IHOS453591:0:Tyes-523---0
ILOI283942:0:Tyes0-4213
JSP290400:1:Tyes1307-0---
JSP375286:0:Tyes219315944-140
KPNE272620:2:Tyes433991120
KRAD266940:2:Fyes1199----0
LACI272621:0:Tyes132---01012
LBIF355278:2:Tyes----0-
LBIF456481:2:Tno-1236--0-
LBRE387344:2:Tyes521561--11400
LCAS321967:1:Tyes10610--986820
LCHO395495:0:Tyes-02241-33712
LDEL321956:0:Tyes----0545
LDEL390333:0:Tyes-0--224711
LGAS324831:0:Tyes-386--7620
LHEL405566:0:Tyes4340--3061170
LINN272626:1:Tno542---0-
LINT363253:3:Tyes0----129
LJOH257314:0:Tyes----3850
LLAC272622:5:Tyes550783--0855
LLAC272623:0:Tyes515---0804
LMES203120:1:Tyes0----954
LMON169963:0:Tno464---0-
LMON265669:0:Tyes443---0-
LPLA220668:0:Tyes0---2451133
LPNE272624:0:Tno13-1098-5870
LPNE297245:1:Fno13-1027-5020
LPNE297246:1:Fyes13-1017-4820
LPNE400673:0:Tno1642-535-01655
LREU557436:0:Tyes6611556--5110
LSAK314315:0:Tyes229---0769
LSPH444177:1:Tyes11430--3183-
LWEL386043:0:Tyes450---0-
LXYL281090:0:Tyes0----1616
MACE188937:0:Tyes-0----
MAEO419665:0:Tyes-----0
MAER449447:0:Tyes0---3117-
MAQU351348:2:Tyes015324
MART243272:0:Tyes----0-
MBAR269797:1:Tyes-0----
MCAP243233:0:Tyes3301489-014881487
MCAP340047:0:Tyes----0-
MFLA265072:0:Tyes115511310-1132836
MFLO265311:0:Tyes----0-
MGEN243273:0:Tyes----0-
MHUN323259:0:Tyes-----0
MHYO262719:0:Tyes----0-
MHYO262722:0:Tno----0-
MHYO295358:0:Tno----0-
MJAN243232:2:Tyes-----0
MKAN190192:0:Tyes-----0
MLOT266835:2:Tyes1649----0
MMAG342108:0:Tyes10430---1623
MMAR267377:0:Tyes-----0
MMAR394221:0:Tyes-----0
MMAR426368:0:Tyes-----0
MMAR444158:0:Tyes-----0
MMAZ192952:0:Tyes-0----
MMOB267748:0:Tyes----0-
MMYC272632:0:Tyes----0-
MPEN272633:0:Tyes----0-
MPET420662:1:Tyes-9990-9981056
MPUL272635:0:Tyes----0-
MSED399549:0:Tyes-----0
MSP164756:1:Tno--0---
MSP164757:0:Tno--0---
MSP189918:2:Tyes--0---
MSP266779:3:Tyes-----0
MSP400668:0:Tyes-05214
MSTA339860:0:Tyes-----0
MSUC221988:0:Tyes21152114281140
MSYN262723:0:Tyes----0-
MTHE187420:0:Tyes-0---201
MTHE264732:0:Tyes0---287683
MTHE349307:0:Tyes-----0
MXAN246197:0:Tyes1400-0--1869
NARO279238:0:Tyes1841----0
NEUR228410:0:Tyes-0--7931795
NEUT335283:2:Tyes19150--2047149
NGON242231:0:Tyes----0459
NHAM323097:2:Tyes0791----
NMEN122586:0:Tno1163---12220
NMEN122587:0:Tyes----0460
NMEN272831:0:Tno----10380
NMEN374833:0:Tno----0395
NMUL323848:3:Tyes-10900-10891087
NOCE323261:1:Tyes---1066
NPHA348780:2:Tyes-----0
NSEN222891:0:Tyes-----0
NSP103690:6:Tyes02431--817-
NSP35761:1:Tyes0-----
NWIN323098:0:Tyes389----0
OANT439375:5:Tyes-242---0
OCAR504832:0:Tyes-0----
OIHE221109:0:Tyes----12960
PABY272844:0:Tyes-----0
PACN267747:0:Tyes0-----
PAER178306:0:Tyes-668---0
PAER208963:0:Tyes014371432143514361433
PAER208964:0:Tno136105214
PARC259536:0:Tyes0-961-958959
PARS340102:0:Tyes-1928---0
PAST100379:0:Tyes----0-
PATL342610:0:Tyes0-5213
PCAR338963:0:Tyes0---5701360
PCRY335284:1:Tyes0-828-832830
PDIS435591:0:Tyes----530
PENT384676:0:Tyes244840231
PFLU205922:0:Tyes137404213
PFLU216595:1:Tyes152904213
PFLU220664:0:Tyes149504213
PFUR186497:0:Tyes-----0
PGIN242619:0:Tyes-----0
PHAL326442:1:Tyes0-5324
PHOR70601:0:Tyes-----0
PING357804:0:Tyes21-0231
PINT246198:1:Tyes-----0
PISL384616:0:Tyes-554---0
PLUM243265:0:Fyes017324
PLUT319225:0:Tyes----0-
PMAR167539:0:Tyes0-----
PMAR74547:0:Tyes831---0-
PMEN399739:0:Tyes135805214
PMOB403833:0:Tyes133----0
PMUL272843:1:Tyes143814370168311691684
PNAP365044:8:Tyes14426290-26432740
PPEN278197:0:Tyes6600--747808
PPRO298386:2:Tyes9-0786
PPUT160488:0:Tno76004213
PPUT351746:0:Tyes285240231
PPUT76869:0:Tno122804213
PRUM264731:0:Tyes----200
PSP117:0:Tyes----0-
PSP296591:2:Tyes-13570-13661468
PSP312153:0:Tyes--0-960958
PSP56811:2:Tyes1151-0-32
PSTU379731:0:Tyes141404213
PSYR205918:0:Tyes116004213
PSYR223283:2:Tyes141804213
PTHE370438:0:Tyes584---0-
PTOR263820:0:Tyes-----0
RALB246199:0:Tyes-0--2942-
RBEL336407:0:Tyes0-----
RBEL391896:0:Fno0-----
RCAN293613:0:Fyes----0-
RCAS383372:0:Tyes03487--15433977
RCON272944:0:Tno----0-
RDEN375451:4:Tyes173----0
RETL347834:5:Tyes-264---0
REUT264198:3:Tyes166817330-17321730
REUT381666:2:Tyes178418540-18531851
RFEL315456:2:Tyes----0-
RFER338969:1:Tyes-11110-11121405
RLEG216596:6:Tyes-0---1072
RMET266264:2:Tyes181118740-18731871
RPAL258594:0:Tyes-0---2760
RPAL316055:0:Tyes-----0
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