CANDIDATE ID: 403

CANDIDATE ID: 403

NUMBER OF GENES: 6
AVERAGE SCORE:    9.9951673e-1 (range=[0.0,1.0])
AVERAGE MINIMUM BLAST P-VAL:    8.3333567e-1

Gene List
List of organisms containing most genes from the group
    Phylogenetic tree highlighting these organisms (opens new page)
List of organisms containing very few or no genes from the group
List of organisms enriched for group
List of organisms depleted for group
Phylogenetic profile similarity with known pathways
Pairwise genome context scores
Pairwise Blast scores
Pathway or protein complex matches in target organism
Genome context matrix
    Genes and their orthologs in genome browser BioCyc pages



GENE LIST:

- EG11192 (yicC) (b3644)
   Products of gene:
     - EG11192-MONOMER (conserved protein)

- EG10966 (spoT) (b3650)
   Products of gene:
     - SPOT-MONOMER (guanosine 3'-diphosphate 5'-triphosphate 3'-diphosphatase [multifunctional])
       Reactions:
        pppGpp + H2O  ->  GTP + diphosphate + H+
         In pathways
         PPGPPMET-PWY (ppGpp biosynthesis)
        ATP + GDP  ->  AMP + ppGpp + H+
         In pathways
         PPGPPMET-PWY (ppGpp biosynthesis)
        ppGpp + H2O  ->  diphosphate + GDP + H+
         In pathways
         PPGPPMET-PWY (ppGpp biosynthesis)

- EG10965 (gmk) (b3648)
   Products of gene:
     - GUANYL-KIN-MONOMER (Gmk)
     - GUANYL-KIN-CPLX (deoxyguanylate kinase / guanylate kinase)
       Reactions:
        ATP + dGMP  =  ADP + 2'-deoxyguanosine-5'-diphosphate + H+
        GMP + ATP  =  GDP + ADP + H+
         In pathways
         PRPP-PWY (superpathway of histidine, purine, and pyrimidine biosynthesis)
         DENOVOPURINE2-PWY (purine nucleotides de novo biosynthesis I)
         PWY-6125 (guanosine nucleotides de novo biosynthesis)
         P1-PWY (P1-PWY)

- EG10899 (rpoZ) (b3649)
   Products of gene:
     - EG10899-MONOMER (RNA polymerase, ω subunit)

- EG10863 (rph) (b3643)
   Products of gene:
     - EG10863-MONOMER (RNase PH monomer)
     - CPLX0-1081 (RNase PH)
       Reactions:
        a tRNA precursor with a short 3' extension + n phosphate  ->  an uncharged tRNA + n a ribonucleoside diphosphate
         In pathways
         PWY0-1479 (tRNA processing pathway)
        a tRNA precursor with a 5' extension and a short 3' extension + n phosphate  ->  a tRNA precursor with a 5' extension + n a nucleoside diphosphate
         In pathways
         PWY0-1479 (tRNA processing pathway)
        phosphate  =  a nucleoside diphosphate

- EG10723 (phnN) (b4094)
   Products of gene:
     - EG10723-MONOMER (ribose 1,5-bisphosphokinase)
       Reactions:
        ribose-1,5-bisphosphate + ATP  ->  5-phospho-alpha-D-ribose 1-diphosphate + ADP + H+
         In pathways
         PRPP-PWY (superpathway of histidine, purine, and pyrimidine biosynthesis)
         PWY0-661 (PRPP biosynthesis II)
         PWY-5532 (PWY-5532)



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ORGANISMS CONTAINING AT LEAST 5 GENES FROM THE GROUP:

Total number of orgs: 225
Effective number of orgs (counting one per cluster within 468 clusters): 154

Organism list
Homologs in each organism in the list
Features enriched in organism list


Follow (ncbi) link, when present, to find the set of organism features for each organism
Org ID  Org Name  # genes in group found in org  
YPSE349747 ncbi Yersinia pseudotuberculosis IP 317586
YPSE273123 ncbi Yersinia pseudotuberculosis IP 329536
YPES386656 ncbi Yersinia pestis Pestoides F6
YPES377628 ncbi Yersinia pestis Nepal5166
YPES360102 ncbi Yersinia pestis Antiqua6
YPES349746 ncbi Yersinia pestis Angola6
YPES214092 ncbi Yersinia pestis CO926
YPES187410 ncbi Yersinia pestis KIM 106
YENT393305 ncbi Yersinia enterocolitica enterocolitica 80816
XORY360094 ncbi Xanthomonas oryzae pv. oryzae PXO99A5
XORY342109 ncbi Xanthomonas oryzae pv. oryzae MAFF 3110185
XORY291331 ncbi Xanthomonas oryzae pv. oryzae KACC103315
XFAS405440 ncbi Xylella fastidiosa M125
XFAS183190 ncbi Xylella fastidiosa Temecula15
XFAS160492 ncbi Xylella fastidiosa 9a5c5
XCAM487884 Xanthomonas campestris pv. paulliniae5
XCAM316273 ncbi Xanthomonas campestris pv. vesicatoria str. 85-105
XCAM314565 ncbi Xanthomonas campestris pv. campestris str. 80045
XCAM190485 ncbi Xanthomonas campestris pv. campestris str. ATCC 339135
XAXO190486 ncbi Xanthomonas axonopodis pv. citri str. 3065
XAUT78245 ncbi Xanthobacter autotrophicus Py25
VVUL216895 ncbi Vibrio vulnificus CMCP65
VVUL196600 ncbi Vibrio vulnificus YJ0165
VPAR223926 ncbi Vibrio parahaemolyticus RIMD 22106336
VFIS312309 ncbi Vibrio fischeri ES1145
VEIS391735 ncbi Verminephrobacter eiseniae EF01-25
VCHO345073 ncbi Vibrio cholerae O3956
VCHO ncbi Vibrio cholerae O1 biovar El Tor str. N169616
TTUR377629 ncbi Teredinibacter turnerae T79016
TTEN273068 ncbi Thermoanaerobacter tengcongensis MB45
TPSE340099 ncbi Thermoanaerobacter pseudethanolicus ATCC 332235
TDEN292415 ncbi Thiobacillus denitrificans ATCC 252596
TCRU317025 ncbi Thiomicrospira crunogena XCL-25
STYP99287 ncbi Salmonella enterica enterica serovar Typhimurium str. LT26
STHE292459 ncbi Symbiobacterium thermophilum IAM 148635
SSP94122 ncbi Shewanella sp. ANA-36
SSP292414 ncbi Ruegeria sp. TM10406
SSON300269 ncbi Shigella sonnei Ss0466
SSED425104 ncbi Shewanella sediminis HAW-EB36
SPRO399741 ncbi Serratia proteamaculans 5686
SPEA398579 ncbi Shewanella pealeana ATCC 7003456
SONE211586 ncbi Shewanella oneidensis MR-16
SMEL266834 ncbi Sinorhizobium meliloti 10215
SMED366394 ncbi Sinorhizobium medicae WSM4195
SLOI323850 ncbi Shewanella loihica PV-46
SLAC55218 Ruegeria lacuscaerulensis5
SHIGELLA ncbi Shigella flexneri 2a str. 2457T6
SHAL458817 ncbi Shewanella halifaxensis HAW-EB46
SGLO343509 ncbi Sodalis glossinidius morsitans5
SFUM335543 ncbi Syntrophobacter fumaroxidans MPOB5
SFLE373384 ncbi Shigella flexneri 5 str. 84016
SFLE198214 ncbi Shigella flexneri 2a str. 3016
SENT454169 ncbi Salmonella enterica enterica serovar Heidelberg str. SL4766
SENT321314 ncbi Salmonella enterica enterica serovar Choleraesuis str. SC-B676
SENT295319 ncbi Salmonella enterica enterica serovar Paratyphi A str. ATCC 91506
SENT220341 ncbi Salmonella enterica enterica serovar Typhi str. CT186
SENT209261 ncbi Salmonella enterica enterica serovar Typhi str. Ty26
SDYS300267 ncbi Shigella dysenteriae Sd1976
SDEN318161 ncbi Shewanella denitrificans OS2176
SDEG203122 ncbi Saccharophagus degradans 2-406
SBOY300268 ncbi Shigella boydii Sb2276
SBAL402882 ncbi Shewanella baltica OS1856
SBAL399599 ncbi Shewanella baltica OS1956
SACI56780 ncbi Syntrophus aciditrophicus SB5
RSPH349102 ncbi Rhodobacter sphaeroides ATCC 170255
RSPH349101 ncbi Rhodobacter sphaeroides ATCC 170295
RSPH272943 ncbi Rhodobacter sphaeroides 2.4.15
RSOL267608 ncbi Ralstonia solanacearum GMI10005
RRUB269796 ncbi Rhodospirillum rubrum ATCC 111705
RPOM246200 ncbi Ruegeria pomeroyi DSS-36
RPAL316058 ncbi Rhodopseudomonas palustris HaA25
RPAL316057 ncbi Rhodopseudomonas palustris BisB55
RPAL316056 ncbi Rhodopseudomonas palustris BisB186
RPAL316055 ncbi Rhodopseudomonas palustris BisA535
RPAL258594 ncbi Rhodopseudomonas palustris CGA0095
RMET266264 ncbi Ralstonia metallidurans CH346
RLEG216596 ncbi Rhizobium leguminosarum bv. viciae 38415
RFER338969 ncbi Rhodoferax ferrireducens T1186
REUT381666 ncbi Ralstonia eutropha H166
REUT264198 ncbi Ralstonia eutropha JMP1346
RETL347834 ncbi Rhizobium etli CFN 425
RDEN375451 ncbi Roseobacter denitrificans OCh 1146
PSYR223283 ncbi Pseudomonas syringae pv. tomato str. DC30006
PSYR205918 ncbi Pseudomonas syringae pv. syringae B728a6
PSTU379731 ncbi Pseudomonas stutzeri A15016
PSP312153 ncbi Polynucleobacter necessarius asymbioticus QLW-P1DMWA-16
PSP296591 ncbi Polaromonas sp. JS6666
PPUT76869 ncbi Pseudomonas putida GB-16
PPUT351746 ncbi Pseudomonas putida F16
PPUT160488 ncbi Pseudomonas putida KT24406
PPRO298386 ncbi Photobacterium profundum SS96
PNAP365044 ncbi Polaromonas naphthalenivorans CJ25
PMUL272843 ncbi Pasteurella multocida multocida Pm706
PMEN399739 ncbi Pseudomonas mendocina ymp6
PLUM243265 ncbi Photorhabdus luminescens laumondii TTO16
PING357804 ncbi Psychromonas ingrahamii 376
PHAL326442 ncbi Pseudoalteromonas haloplanktis TAC1256
PFLU220664 ncbi Pseudomonas fluorescens Pf-55
PFLU216595 ncbi Pseudomonas fluorescens SBW256
PFLU205922 ncbi Pseudomonas fluorescens Pf0-16
PENT384676 ncbi Pseudomonas entomophila L486
PATL342610 ncbi Pseudoalteromonas atlantica T6c5
PAER208964 ncbi Pseudomonas aeruginosa PAO16
PAER208963 ncbi Pseudomonas aeruginosa UCBPP-PA146
OANT439375 ncbi Ochrobactrum anthropi ATCC 491886
NOCE323261 ncbi Nitrosococcus oceani ATCC 197075
NMUL323848 ncbi Nitrosospira multiformis ATCC 251965
NMEN374833 ncbi Neisseria meningitidis 0534426
NMEN272831 ncbi Neisseria meningitidis FAM186
NMEN122587 ncbi Neisseria meningitidis Z24916
NMEN122586 ncbi Neisseria meningitidis MC586
NGON242231 ncbi Neisseria gonorrhoeae FA 10906
NEUT335283 ncbi Nitrosomonas eutropha C915
NEUR228410 ncbi Nitrosomonas europaea ATCC 197185
MXAN246197 ncbi Myxococcus xanthus DK 16225
MSUC221988 ncbi Mannheimia succiniciproducens MBEL55E6
MSP409 Methylobacterium sp.6
MSP400668 ncbi Marinomonas sp. MWYL16
MSP266779 ncbi Chelativorans sp. BNC15
MPET420662 ncbi Methylibium petroleiphilum PM16
MMAG342108 ncbi Magnetospirillum magneticum AMB-15
MLOT266835 ncbi Mesorhizobium loti MAFF3030995
MFLA265072 ncbi Methylobacillus flagellatus KT6
MEXT419610 ncbi Methylobacterium extorquens PA15
MCAP243233 ncbi Methylococcus capsulatus Bath5
MAQU351348 ncbi Marinobacter aquaeolei VT86
LPNE400673 ncbi Legionella pneumophila Corby5
LPNE297246 ncbi Legionella pneumophila Paris6
LPNE297245 ncbi Legionella pneumophila Lens6
LCHO395495 ncbi Leptothrix cholodnii SP-65
KPNE272620 ncbi Klebsiella pneumoniae pneumoniae MGH 785786
JSP375286 ncbi Janthinobacterium sp. Marseille6
JSP290400 ncbi Jannaschia sp. CCS16
ILOI283942 ncbi Idiomarina loihiensis L2TR5
HSOM228400 ncbi Haemophilus somnus 23365
HSOM205914 ncbi Haemophilus somnus 129PT5
HMOD498761 ncbi Heliobacterium modesticaldum Ice15
HINF71421 ncbi Haemophilus influenzae Rd KW206
HINF374930 ncbi Haemophilus influenzae PittEE6
HINF281310 ncbi Haemophilus influenzae 86-028NP6
HHAL349124 ncbi Halorhodospira halophila SL15
HDUC233412 ncbi Haemophilus ducreyi 35000HP5
HCHE349521 ncbi Hahella chejuensis KCTC 23966
HARS204773 ncbi Herminiimonas arsenicoxydans6
GURA351605 ncbi Geobacter uraniireducens Rf45
GSUL243231 ncbi Geobacter sulfurreducens PCA5
GMET269799 ncbi Geobacter metallireducens GS-155
ESP42895 Enterobacter sp.6
EFER585054 ncbi Escherichia fergusonii ATCC 354696
ECOO157 ncbi Escherichia coli O157:H7 EDL9336
ECOL83334 Escherichia coli O157:H76
ECOL585397 ncbi Escherichia coli ED1a6
ECOL585057 ncbi Escherichia coli IAI396
ECOL585056 ncbi Escherichia coli UMN0266
ECOL585055 ncbi Escherichia coli 559896
ECOL585035 ncbi Escherichia coli S886
ECOL585034 ncbi Escherichia coli IAI16
ECOL481805 ncbi Escherichia coli ATCC 87396
ECOL469008 ncbi Escherichia coli BL21(DE3)6
ECOL439855 ncbi Escherichia coli SMS-3-56
ECOL413997 ncbi Escherichia coli B str. REL6066
ECOL409438 ncbi Escherichia coli SE116
ECOL405955 ncbi Escherichia coli APEC O16
ECOL364106 ncbi Escherichia coli UTI896
ECOL362663 ncbi Escherichia coli 5366
ECOL331111 ncbi Escherichia coli E24377A6
ECOL316407 ncbi Escherichia coli K-12 substr. W31105
ECOL199310 ncbi Escherichia coli CFT0736
ECAR218491 ncbi Pectobacterium atrosepticum SCRI10436
DRED349161 ncbi Desulfotomaculum reducens MI-15
DNOD246195 ncbi Dichelobacter nodosus VCS1703A5
DHAF138119 ncbi Desulfitobacterium hafniense Y515
DARO159087 ncbi Dechloromonas aromatica RCB6
CVIO243365 ncbi Chromobacterium violaceum ATCC 124726
CSP501479 Citreicella sp. SE456
CSAL290398 ncbi Chromohalobacter salexigens DSM 30436
CPSY167879 ncbi Colwellia psychrerythraea 34H6
CPER289380 ncbi Clostridium perfringens SM1015
CPER195103 ncbi Clostridium perfringens ATCC 131245
CPER195102 ncbi Clostridium perfringens 135
CJAP155077 Cellvibrio japonicus5
CBUR434922 ncbi Coxiella burnetii Dugway 5J108-1115
CBUR360115 ncbi Coxiella burnetii RSA 3315
CBUR227377 ncbi Coxiella burnetii RSA 4935
CBOT508765 ncbi Clostridium botulinum B str. Eklund 17B5
BVIE269482 ncbi Burkholderia vietnamiensis G46
BTHA271848 ncbi Burkholderia thailandensis E2646
BSUI470137 ncbi Brucella suis ATCC 234455
BSUI204722 ncbi Brucella suis 13305
BSP376 Bradyrhizobium sp.6
BSP36773 Burkholderia sp.6
BPSE320373 ncbi Burkholderia pseudomallei 6686
BPSE320372 ncbi Burkholderia pseudomallei 1710b6
BPSE272560 ncbi Burkholderia pseudomallei K962436
BPET94624 Bordetella petrii6
BPER257313 ncbi Bordetella pertussis Tohama I6
BPAR257311 ncbi Bordetella parapertussis 128226
BMEL359391 ncbi Brucella melitensis biovar Abortus 23085
BMEL224914 ncbi Brucella melitensis bv. 1 str. 16M5
BMAL320389 ncbi Burkholderia mallei NCTC 102476
BMAL320388 ncbi Burkholderia mallei SAVP16
BMAL243160 ncbi Burkholderia mallei ATCC 233446
BJAP224911 ncbi Bradyrhizobium japonicum USDA 1106
BCEN331272 ncbi Burkholderia cenocepacia HI24246
BCEN331271 ncbi Burkholderia cenocepacia AU 10546
BCAN483179 ncbi Brucella canis ATCC 233655
BBRO257310 ncbi Bordetella bronchiseptica RB506
BAMB398577 ncbi Burkholderia ambifaria MC40-66
BAMB339670 ncbi Burkholderia ambifaria AMMD6
BABO262698 ncbi Brucella abortus bv. 1 str. 9-9415
ASP76114 ncbi Aromatoleum aromaticum EbN16
ASP62928 ncbi Azoarcus sp. BH726
ASP232721 ncbi Acidovorax sp. JS426
ASAL382245 ncbi Aeromonas salmonicida salmonicida A4496
APLE434271 ncbi Actinobacillus pleuropneumoniae serovar 3 str. JL036
APLE416269 ncbi Actinobacillus pleuropneumoniae L206
AHYD196024 Aeromonas hydrophila dhakensis5
AFER243159 ncbi Acidithiobacillus ferrooxidans ATCC 232706
AEHR187272 ncbi Alkalilimnicola ehrlichii MLHE-16
ADEH290397 ncbi Anaeromyxobacter dehalogenans 2CP-C5
ACRY349163 ncbi Acidiphilium cryptum JF-56
ACAU438753 ncbi Azorhizobium caulinodans ORS 5716
ABOR393595 ncbi Alcanivorax borkumensis SK25
ABAU360910 ncbi Bordetella avium 197N6
AAVE397945 ncbi Acidovorax citrulli AAC00-16


Names of the homologs of the genes in the group in each of these orgs
  EG11192   EG10966   EG10965   EG10899   EG10863   EG10723   
YPSE349747 YPSIP31758_0055YPSIP31758_0039YPSIP31758_0041YPSIP31758_0040YPSIP31758_0056YPSIP31758_3567
YPSE273123 YPTB0040YPTB0035YPTB0037YPTB0036YPTB0041YPTB0509
YPES386656 YPDSF_3862YPDSF_3867YPDSF_3865YPDSF_3866YPDSF_3861YPDSF_3274
YPES377628 YPN_3807YPN_3812YPN_3810YPN_3811YPN_3806YPN_0623
YPES360102 YPA_3499YPA_3504YPA_3502YPA_3503YPA_3498YPA_2966
YPES349746 YPANGOLA_A0048YPANGOLA_A0043YPANGOLA_A0045YPANGOLA_A0044YPANGOLA_A0049YPANGOLA_A4024
YPES214092 YPO0043YPO0038YPO0040YPO0039YPO0044YPO3464
YPES187410 Y0098Y0103Y0101Y0102Y0097Y0721
YENT393305 YE0057YE0045YE0047YE0046YE0058YE0470
XORY360094 XOOORF_4204XOOORF_4200XOOORF_4203XOOORF_4201XOOORF_4205
XORY342109 XOO1041XOO1046XOO1042XOO1045XOO1040
XORY291331 XOO1144XOO1149XOO1145XOO1148XOO1143
XFAS405440 XFASM12_0844XFASM12_1874XFASM12_0843XFASM12_0842XFASM12_0845
XFAS183190 PD_0721PD_1707PD_0720PD_0719PD_0722
XFAS160492 XF1504XF0352XF1503XF1502XF1505
XCAM487884 XCC-B100_0934XCC-B100_0937XCC-B100_0935XCC-B100_0936XCC-B100_0933
XCAM316273 XCAORF_3591XCAORF_3587XCAORF_3590XCAORF_3588XCAORF_3592
XCAM314565 XC_0959XC_0956XC_0958XC_0957XC_0960
XCAM190485 XCC3250XCC3247XCC3249XCC3248XCC3251
XAXO190486 XAC3396XAC3393XAC3395XAC3394XAC3397
XAUT78245 XAUT_3135XAUT_3136XAUT_3837XAUT_2535XAUT_1309
VVUL216895 VV1_0833VV1_0852VV1_0850VV1_0851VV1_0832
VVUL196600 VV0278VV0241VV0243VV0242VV0279
VPAR223926 VP0176VP0159VP0161VP0160VP0177VP0161
VFIS312309 VF0110VF0104VF0106VF0105VF0111
VEIS391735 VEIS_4159VEIS_4220VEIS_4218VEIS_4219VEIS_2955
VCHO345073 VC0395_A2588VC0395_A2282VC0395_A2280VC0395_A2281VC0395_A2589VC0395_A2280
VCHO VC0209VC2710VC2708VC2709VC0210VC2708
TTUR377629 TERTU_0175TERTU_0172TERTU_0174TERTU_0173TERTU_0176TERTU_0174
TTEN273068 TTE1513TTE1195TTE1511TTE0618TTE1511
TPSE340099 TETH39_1326TETH39_1028TETH39_1324TETH39_1683TETH39_1324
TDEN292415 TBD_0474TBD_0471TBD_0473TBD_0472TBD_0477TBD_2289
TCRU317025 TCR_2055TCR_2144TCR_2138TCR_2143TCR_2089
STYP99287 STM3735STM3742STM3740STM3741STM3734STM3740
STHE292459 STH1337STH2437STH1339STH343STH1339
SSP94122 SHEWANA3_3778SHEWANA3_3812SHEWANA3_3810SHEWANA3_3811SHEWANA3_3777SHEWANA3_3810
SSP292414 TM1040_1267TM1040_2565TM1040_1266TM1040_2566TM1040_2872TM1040_3697
SSON300269 SSO_3762SSO_3755SSO_3757SSO_3756SSO_3763SSO_4270
SSED425104 SSED_0377SSED_0334SSED_0336SSED_0335SSED_0378SSED_0336
SPRO399741 SPRO_4848SPRO_4869SPRO_4867SPRO_4868SPRO_4847SPRO_0514
SPEA398579 SPEA_3845SPEA_3879SPEA_3877SPEA_3878SPEA_3844SPEA_3877
SONE211586 SO_4257SO_0359SO_0361SO_0360SO_4256SO_0361
SMEL266834 SMC00576SMC00577SMC02408SMC01144SMB21170
SMED366394 SMED_0758SMED_0759SMED_0676SMED_0010SMED_4662
SLOI323850 SHEW_3489SHEW_3499SHEW_3497SHEW_3498SHEW_3488SHEW_3497
SLAC55218 SL1157_2860SL1157_1883SL1157_2859SL1157_1882SL1157_1093
SHIGELLA YICCSPOTGMKRPOZRPHGMK
SHAL458817 SHAL_0421SHAL_0390SHAL_0392SHAL_0391SHAL_0422SHAL_0392
SGLO343509 SG2214SG2223SG2221SG2222SG2213
SFUM335543 SFUM_3632SFUM_2111SFUM_3630SFUM_1758SFUM_3630
SFLE373384 SFV_3886SFV_3879SFV_3881SFV_3880SFV_3887SFV_3881
SFLE198214 AAN45130.1AAN45137.1AAN45135.1AAN45136.1AAN45129.1AAN45135.1
SENT454169 SEHA_C4061SEHA_C4068SEHA_C4066SEHA_C4067SEHA_C4060SEHA_C4066
SENT321314 SCH_3658SCH_3666SCH_3664SCH_3665SCH_3657SCH_3664
SENT295319 SPA3587SPA3594SPA3592SPA3593SPA3586SPA3592
SENT220341 STY4059STY4050STY4052STY4051STY4060STY4052
SENT209261 T3783T3776T3778T3777T3784T3778
SDYS300267 SDY_4075SDY_4082SDY_4080SDY_4081SDY_4074SDY_4122
SDEN318161 SDEN_0318SDEN_3435SDEN_3433SDEN_3434SDEN_0319SDEN_3433
SDEG203122 SDE_3684SDE_3697SDE_3695SDE_3696SDE_3683SDE_3695
SBOY300268 SBO_3646SBO_3727SBO_3729SBO_3728SBO_3645SBO_4120
SBAL402882 SHEW185_0367SHEW185_0351SHEW185_0353SHEW185_0352SHEW185_0369SHEW185_0353
SBAL399599 SBAL195_0380SBAL195_0358SBAL195_0360SBAL195_0359SBAL195_0381SBAL195_0360
SACI56780 SYN_01278SYN_00904SYN_01280SYN_00902SYN_01279
RSPH349102 RSPH17025_1103RSPH17025_2576RSPH17025_1104RSPH17025_2577RSPH17025_2658
RSPH349101 RSPH17029_1564RSPH17029_0303RSPH17029_1563RSPH17029_0302RSPH17029_2882
RSPH272943 RSP_2920RSP_1670RSP_2919RSP_1669RSP_1221
RSOL267608 RSC2156RSC2153RSC2155RSC2154RSC2159
RRUB269796 RRU_A0428RRU_A1856RRU_A0429RRU_A1857RRU_A3641
RPOM246200 SPO_1944SPO_3203SPO_1945SPO_3204SPO_0008SPO_0474
RPAL316058 RPB_2471RPB_2472RPB_2607RPB_0425RPB_4096
RPAL316057 RPD_2975RPD_2974RPD_2646RPD_0395RPD_3832
RPAL316056 RPC_2304RPC_2635RPC_2305RPC_2634RPC_0325RPC_1279
RPAL316055 RPE_3302RPE_3301RPE_3027RPE_0353RPE_3103
RPAL258594 RPA3070RPA3069RPA2692RPA0329RPA0688
RMET266264 RMET_0855RMET_0858RMET_0856RMET_0857RMET_0852RMET_0770
RLEG216596 RL1562RL1563RL1505RL0380RL0163
RFER338969 RFER_1626RFER_3149RFER_3147RFER_3148RFER_1629RFER_0148
REUT381666 H16_A0952H16_A0955H16_A0953H16_A0954H16_A0949H16_B1291
REUT264198 REUT_A2474REUT_A2471REUT_A2473REUT_A2472REUT_A2477REUT_B4182
RETL347834 RHE_CH01447RHE_CH01448RHE_CH01384RHE_CH00363RHE_CH00154
RDEN375451 RD1_2637RD1_1359RD1_2638RD1_1358RD1_0426RD1_2388
PSYR223283 PSPTO_0076PSPTO_0073PSPTO_0075PSPTO_0074PSPTO_0077PSPTO_2566
PSYR205918 PSYR_0212PSYR_0209PSYR_0211PSYR_0210PSYR_0213PSYR_2258
PSTU379731 PST_0462PST_0459PST_0461PST_0460PST_0463PST_4122
PSP312153 PNUC_1079PNUC_1076PNUC_1078PNUC_1077PNUC_1080PNUC_1078
PSP296591 BPRO_1336BPRO_1333BPRO_1335BPRO_1334BPRO_1339BPRO_1335
PPUT76869 PPUTGB1_5343PPUTGB1_5350PPUTGB1_5344PPUTGB1_5349PPUTGB1_5342PPUTGB1_3974
PPUT351746 PPUT_5203PPUT_5211PPUT_5204PPUT_5210PPUT_5202PPUT_1446
PPUT160488 PP_5295PP_5302PP_5296PP_5301PP_5294PP_4469
PPRO298386 PBPRA0197PBPRA0189PBPRA0191PBPRA0190PBPRA0198PBPRA0191
PNAP365044 PNAP_0812PNAP_0809PNAP_0811PNAP_0810PNAP_0811
PMUL272843 PM1875PM0920PM0922PM0921PM1876PM0922
PMEN399739 PMEN_4387PMEN_4390PMEN_4388PMEN_4389PMEN_4386PMEN_2879
PLUM243265 PLU4871PLU0272PLU0274PLU0273PLU4870PLU0274
PING357804 PING_3652PING_0203PING_3623PING_3624PING_3479PING_3685
PHAL326442 PSHAA2789PSHAA2793PSHAA2790PSHAA2791PSHAA2788PSHAA2790
PFLU220664 PFL_6060PFL_6063PFL_6061PFL_6062PFL_6059
PFLU216595 PFLU5992PFLU5995PFLU5993PFLU5994PFLU5991PFLU1788
PFLU205922 PFL_5548PFL_5551PFL_5549PFL_5550PFL_5547PFL_4269
PENT384676 PSEEN5440PSEEN5447PSEEN5441PSEEN5446PSEEN5439PSEEN3864
PATL342610 PATL_4283PATL_0349PATL_0347PATL_0348PATL_4282
PAER208964 PA5335PA5338PA5336PA5337PA5334PA3373
PAER208963 PA14_70430PA14_70470PA14_70440PA14_70450PA14_70420PA14_20440
OANT439375 OANT_0575OANT_2636OANT_0576OANT_2637OANT_0182OANT_2188
NOCE323261 NOC_0956NOC_1214NOC_1212NOC_1213NOC_2442
NMUL323848 NMUL_A0065NMUL_A0050NMUL_A0052NMUL_A0051NMUL_A0066
NMEN374833 NMCC_0670NMCC_1569NMCC_1571NMCC_1570NMCC_1406NMCC_1571
NMEN272831 NMC0661NMC1577NMC1579NMC1578NMC1430NMC1579
NMEN122587 NMA0916NMA1917NMA1919NMA1918NMA1702NMA1919
NMEN122586 NMB_0711NMB_1659NMB_1661NMB_1660NMB_1499NMB_1661
NGON242231 NGO0286NGO1308NGO1310NGO1309NGO0958NGO1310
NEUT335283 NEUT_2372NEUT_1601NEUT_0614NEUT_0613NEUT_0308
NEUR228410 NE2472NE0368NE2254NE2255NE0276
MXAN246197 MXAN_4706MXAN_3204MXAN_4705MXAN_4890MXAN_2004
MSUC221988 MS0253MS1736MS1738MS1737MS0252MS1738
MSP409 M446_3194M446_0031M446_3193M446_0030M446_4253M446_2907
MSP400668 MMWYL1_4362MMWYL1_4386MMWYL1_4384MMWYL1_4385MMWYL1_4361MMWYL1_4384
MSP266779 MESO_1764MESO_1763MESO_0945MESO_4016MESO_3660
MPET420662 MPE_A2708MPE_A2721MPE_A2715MPE_A2716MPE_A2705MPE_B0648
MMAG342108 AMB0747AMB2253AMB0748AMB2252AMB4498
MLOT266835 MLR7856MLR7857MLR7753MLR4622MLL9141
MFLA265072 MFLA_0046MFLA_0050MFLA_0048MFLA_0049MFLA_0043MFLA_0048
MEXT419610 MEXT_1999MEXT_3196MEXT_2000MEXT_3197MEXT_0401
MCAP243233 MCA_3026MCA_2023MCA_2975MCA_2022MCA_3024
MAQU351348 MAQU_0549MAQU_0636MAQU_0634MAQU_0635MAQU_0548MAQU_4044
LPNE400673 LPC_1495LPC_1492LPC_1494LPC_1493LPC_1496
LPNE297246 LPP1993LPP1990LPP1992LPP1991LPP1994LPP1992
LPNE297245 LPL1988LPL1985LPL1987LPL1986LPL1989LPL1987
LCHO395495 LCHO_0708LCHO_0731LCHO_0729LCHO_0730LCHO_0705
KPNE272620 GKPORF_B3353GKPORF_B3359GKPORF_B3357GKPORF_B3358GKPORF_B3347GKPORF_B3852
JSP375286 MMA_1329MMA_1326MMA_1328MMA_1327MMA_1332MMA_0151
JSP290400 JANN_2441JANN_0514JANN_2440JANN_0513JANN_0206JANN_2855
ILOI283942 IL2421IL2380IL2382IL2381IL2425
HSOM228400 HSM_0325HSM_0548HSM_0546HSM_0547HSM_0326
HSOM205914 HS_1293HS_1455HS_1457HS_1456HS_1292
HMOD498761 HM1_2124HM1_1843HM1_2127HM1_0465HM1_2127
HINF71421 HI_0467HI_1741HI_1743HI_1742HI_0273HI_1743
HINF374930 CGSHIEE_00655CGSHIEE_03330CGSHIEE_03320CGSHIEE_03325CGSHIEE_01685CGSHIEE_03320
HINF281310 NTHI0598NTHI2052NTHI2054NTHI2053NTHI0381NTHI2054
HHAL349124 HHAL_0975HHAL_0969HHAL_0976HHAL_0970HHAL_0973
HDUC233412 HD_0302HD_1924HD_1830HD_1923HD_0301
HCHE349521 HCH_06336HCH_06313HCH_06315HCH_06314HCH_06338HCH_06315
HARS204773 HEAR2129HEAR2132HEAR2130HEAR2131HEAR2126HEAR2130
GURA351605 GURA_3163GURA_3160GURA_3162GURA_3161GURA_2256
GSUL243231 GSU_2239GSU_2236GSU_2238GSU_2237GSU_1795
GMET269799 GMET_2328GMET_2325GMET_2327GMET_2326GMET_1876
ESP42895 ENT638_0095ENT638_0089ENT638_0091ENT638_0090ENT638_0096ENT638_0298
EFER585054 EFER_3936EFER_3942EFER_3940EFER_3941EFER_3935EFER_3940
ECOO157 YICCSPOTGMKRPOZRPHPHNN
ECOL83334 ECS4519ECS4525ECS4523ECS4524ECS4518ECS5077
ECOL585397 ECED1_4328ECED1_4334ECED1_4332ECED1_4333ECED1_4327ECED1_4829
ECOL585057 ECIAI39_4163ECIAI39_4172ECIAI39_4170ECIAI39_4171ECIAI39_4162ECIAI39_4518
ECOL585056 ECUMN_4159ECUMN_4166ECUMN_4164ECUMN_4165ECUMN_4158ECUMN_4626
ECOL585055 EC55989_4109EC55989_4116EC55989_4114EC55989_4115EC55989_4108EC55989_4585
ECOL585035 ECS88_4058ECS88_4065ECS88_4063ECS88_4064ECS88_4057ECS88_4595
ECOL585034 ECIAI1_3815ECIAI1_3822ECIAI1_3820ECIAI1_3821ECIAI1_3814ECIAI1_4324
ECOL481805 ECOLC_0067ECOLC_0061ECOLC_0063ECOLC_0062ECOLC_0068ECOLC_3932
ECOL469008 ECBD_0082ECBD_0075ECBD_0077ECBD_0076ECBD_0083ECBD_3936
ECOL439855 ECSMS35_3979ECSMS35_3985ECSMS35_3983ECSMS35_3984ECSMS35_3978ECSMS35_4560
ECOL413997 ECB_03501ECB_03507ECB_03505ECB_03506ECB_03500ECB_03966
ECOL409438 ECSE_3924ECSE_3932ECSE_3930ECSE_3931ECSE_3923ECSE_4393
ECOL405955 APECO1_2817APECO1_2811APECO1_2813APECO1_2812APECO1_2818APECO1_2356
ECOL364106 UTI89_C4188UTI89_C4195UTI89_C4193UTI89_C4194UTI89_C4187UTI89_C4689
ECOL362663 ECP_3742ECP_3748ECP_3746ECP_3747ECP_3741ECP_4337
ECOL331111 ECE24377A_4145ECE24377A_4153ECE24377A_4151ECE24377A_4152ECE24377A_4144ECE24377A_4648
ECOL316407 ECK3634:JW3619:B3644ECK3640:JW3625:B3650ECK3638:JW3623:B3648ECK3639:JW3624:B3649ECK4087:JW4055:B4094
ECOL199310 C4468C4475C4473C4474C4467C4473
ECAR218491 ECA0130ECA0038ECA0040ECA0039ECA0140ECA0497
DRED349161 DRED_1698DRED_0733DRED_1700DRED_2684DRED_1700
DNOD246195 DNO_0665DNO_0645DNO_1021DNO_0664DNO_0645
DHAF138119 DSY2731DSY2451DSY2729DSY3222DSY2729
DARO159087 DARO_3848DARO_3843DARO_3845DARO_3844DARO_3851DARO_3845
CVIO243365 CV_3850CV_3768CV_3770CV_3769CV_3847CV_1849
CSP501479 CSE45_1805CSE45_0276CSE45_1806CSE45_0275CSE45_3415CSE45_2447
CSAL290398 CSAL_3207CSAL_3235CSAL_3233CSAL_3234CSAL_3206CSAL_3233
CPSY167879 CPS_0107CPS_4973CPS_4971CPS_4972CPS_0112CPS_4971
CPER289380 CPR_1721CPR_1904CPR_1719CPR_1718CPR_2240
CPER195103 CPF_2003CPF_2193CPF_2001CPF_2000CPF_2536
CPER195102 CPE1750CPE1938CPE1748CPE1747CPE2254
CJAP155077 CJA_0202CJA_3571CJA_3569CJA_3570CJA_0203
CBUR434922 COXBU7E912_1781COXBU7E912_1778COXBU7E912_1780COXBU7E912_1779COXBU7E912_1782
CBUR360115 COXBURSA331_A0406COXBURSA331_A0409COXBURSA331_A0407COXBURSA331_A0408COXBURSA331_A0405
CBUR227377 CBU_0300CBU_0303CBU_0301CBU_0302CBU_0299
CBOT508765 CLL_A1209CLL_A1031CLL_A1211CLL_A0417CLL_A1211
BVIE269482 BCEP1808_0915BCEP1808_0918BCEP1808_0916BCEP1808_0917BCEP1808_0914BCEP1808_0916
BTHA271848 BTH_I1585BTH_I1588BTH_I1586BTH_I1587BTH_I1584BTH_I1586
BSUI470137 BSUIS_A0489BSUIS_A0490BSUIS_A0679BSUIS_A0174BSUIS_A1148
BSUI204722 BR_0463BR_0464BR_0651BR_0173BR_1099
BSP376 BRADO3316BRADO4468BRADO3317BRADO4469BRADO0173BRADO5349
BSP36773 BCEP18194_A4106BCEP18194_A4109BCEP18194_A4107BCEP18194_A4108BCEP18194_A4105BCEP18194_A4107
BPSE320373 BURPS668_2950BURPS668_2947BURPS668_2949BURPS668_2948BURPS668_2951BURPS668_3315
BPSE320372 BURPS1710B_A3307BURPS1710B_A3304BURPS1710B_A3306BURPS1710B_A3305BURPS1710B_A3308BURPS1710B_A3634
BPSE272560 BPSL2564BPSL2561BPSL2563BPSL2562BPSL2565BPSL2860
BPET94624 BPET2267BPET2246BPET2248BPET2247BPET2268BPET2248
BPER257313 BP1587BP1576BP1578BP1577BP1588BP1578
BPAR257311 BPP2996BPP3007BPP3005BPP3006BPP2995BPP3005
BMEL359391 BAB1_0488BAB1_0489BAB1_0671BAB1_0172BAB1_1123
BMEL224914 BMEI1470BMEI1469BMEI1297BMEI1775BMEI0882
BMAL320389 BMA10247_1965BMA10247_1962BMA10247_1964BMA10247_1963BMA10247_1966BMA10247_2583
BMAL320388 BMASAVP1_A0814BMASAVP1_A0817BMASAVP1_A0815BMASAVP1_A0816BMASAVP1_A0813BMASAVP1_A0313
BMAL243160 BMA_2097BMA_2094BMA_2096BMA_2095BMA_2098BMA_2397
BJAP224911 BLR4087BLL5065BLR4088BLL5066BLL0674BLR1228
BCEN331272 BCEN2424_0998BCEN2424_1001BCEN2424_0999BCEN2424_1000BCEN2424_0997BCEN2424_0999
BCEN331271 BCEN_0519BCEN_0522BCEN_0520BCEN_0521BCEN_0518BCEN_0520
BCAN483179 BCAN_A0468BCAN_A0469BCAN_A0664BCAN_A0178BCAN_A1119
BBRO257310 BB2962BB2973BB2971BB2972BB2961BB2971
BAMB398577 BAMMC406_0870BAMMC406_0873BAMMC406_0871BAMMC406_0872BAMMC406_0869BAMMC406_0871
BAMB339670 BAMB_0858BAMB_0861BAMB_0859BAMB_0860BAMB_0857BAMB_0859
BABO262698 BRUAB1_0485BRUAB1_0486BRUAB1_0668BRUAB1_0169BRUAB1_1105
ASP76114 C1A25EBA3497EBA3494EBA3495C1A232EBA3494
ASP62928 AZO3960AZO3951AZO3953AZO3952AZO3963AZO3953
ASP232721 AJS_0926AJS_0949AJS_0947AJS_0948AJS_0923AJS_0947
ASAL382245 ASA_0100ASA_0034ASA_0036ASA_0035ASA_0101ASA_0036
APLE434271 APJL_0056APJL_1861APJL_0264APJL_1862APJL_0055APJL_0264
APLE416269 APL_0056APL_1825APL_0256APL_1826APL_0055APL_0256
AHYD196024 AHA_4225AHA_0039AHA_0041AHA_0040AHA_4224
AFER243159 AFE_2476AFE_2473AFE_2475AFE_2474AFE_0758AFE_0812
AEHR187272 MLG_2445MLG_2442MLG_2444MLG_2443MLG_2446MLG_2444
ADEH290397 ADEH_2607ADEH_2550ADEH_2606ADEH_3590ADEH_3361
ACRY349163 ACRY_1448ACRY_0531ACRY_1447ACRY_0530ACRY_1664ACRY_2919
ACAU438753 AZC_4317AZC_2000AZC_4318AZC_1253AZC_4289AZC_3400
ABOR393595 ABO_0205ABO_0176ABO_0178ABO_0177ABO_0206
ABAU360910 BAV1937BAV1957BAV1955BAV1956BAV1936BAV1955
AAVE397945 AAVE_3582AAVE_3585AAVE_3583AAVE_3584AAVE_3579AAVE_3583


Organism features enriched in list (features available for 214 out of the 225 orgs in the list)
Feature    Pvalue       Num occurrences in list  Total num occurrences  
Arrangment:Pairs 0.008718451112
Disease:Brucellosis 0.006467855
Disease:Bubonic_plague 0.002338766
Disease:Dysentery 0.002338766
Disease:Gastroenteritis 0.00295241013
Endospores:No 1.583e-1436211
Endospores:Yes 0.00180231053
GC_Content_Range4:0-40 2.689e-3117213
GC_Content_Range4:40-60 1.537e-9116224
GC_Content_Range4:60-100 2.884e-881145
GC_Content_Range7:0-30 4.763e-6447
GC_Content_Range7:30-40 7.650e-2313166
GC_Content_Range7:50-60 7.856e-1372107
GC_Content_Range7:60-70 3.766e-1080134
Genome_Size_Range5:0-2 1.746e-295155
Genome_Size_Range5:2-4 0.000857456197
Genome_Size_Range5:4-6 1.989e-24123184
Genome_Size_Range5:6-10 0.00005523047
Genome_Size_Range9:1-2 2.152e-225128
Genome_Size_Range9:2-3 0.000205728120
Genome_Size_Range9:4-5 8.656e-106296
Genome_Size_Range9:5-6 1.177e-116188
Genome_Size_Range9:6-8 7.408e-62738
Gram_Stain:Gram_Neg 2.209e-38193333
Gram_Stain:Gram_Pos 1.734e-257150
Habitat:Multiple 0.000351783178
Habitat:Specialized 0.0002055853
Motility:No 3.688e-1419151
Motility:Yes 2.803e-12138267
Optimal_temp.:25-30 1.908e-61719
Optimal_temp.:35-37 1.733e-61313
Oxygen_Req:Anaerobic 2.785e-618102
Oxygen_Req:Facultative 1.940e-7102201
Pathogenic_in:Animal 0.00676693366
Pathogenic_in:Plant 0.00324391115
Shape:Coccobacillus 0.00027461011
Shape:Coccus 9.054e-81082
Shape:Rod 1.510e-18176347
Shape:Sphere 0.0089080219
Shape:Spiral 0.0007140434
Temp._range:Hyperthermophilic 0.0002951123
Temp._range:Mesophilic 0.0005094188473
Temp._range:Thermophilic 0.0004978435



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ORGANISMS CONTAINING AT MOST 1 GENES FROM THE GROUP:

Total number of orgs: 140
Effective number of orgs (counting one per cluster within 468 clusters): 122

Organism list
Homologs in each organism in the list
Features enriched in organism list


Follow (ncbi) link, when present, to find the set of organism features for each organism
Org ID  Org Name  # genes in group found in org  
WSUC273121 ncbi Wolinella succinogenes DSM 17401
UURE95667 Ureaplasma urealyticum serovar 130
UURE95664 Ureaplasma urealyticum serovar 100
UPAR505682 ncbi Ureaplasma parvum serovar 3 str. ATCC 278150
UMET351160 ncbi uncultured methanogenic archaeon RC-I1
TWHI218496 ncbi Tropheryma whipplei TW08/271
TWHI203267 ncbi Tropheryma whipplei Twist1
TVOL273116 ncbi Thermoplasma volcanium GSS11
TPEN368408 ncbi Thermofilum pendens Hrk 51
TPAL243276 ncbi Treponema pallidum pallidum Nichols0
TMAR243274 ncbi Thermotoga maritima MSB81
TKOD69014 ncbi Thermococcus kodakarensis KOD11
TDEN326298 ncbi Sulfurimonas denitrificans DSM 12510
TDEN243275 ncbi Treponema denticola ATCC 354051
TACI273075 ncbi Thermoplasma acidophilum DSM 17281
STOK273063 ncbi Sulfolobus tokodaii 71
SSP387093 ncbi Sulfurovum sp. NBC37-11
SSOL273057 ncbi Sulfolobus solfataricus P21
SRUB309807 ncbi Salinibacter ruber DSM 138551
SMAR399550 ncbi Staphylothermus marinus F11
SACI330779 ncbi Sulfolobus acidocaldarius DSM 6391
PTOR263820 ncbi Picrophilus torridus DSM 97901
PRUM264731 ncbi Prevotella ruminicola 231
PMAR167542 ncbi Prochlorococcus marinus MIT 95151
PLUT319225 ncbi Chlorobium luteolum DSM 2731
PISL384616 ncbi Pyrobaculum islandicum DSM 41841
PINT246198 Prevotella intermedia 171
PHOR70601 ncbi Pyrococcus horikoshii OT31
PGIN242619 ncbi Porphyromonas gingivalis W831
PFUR186497 ncbi Pyrococcus furiosus DSM 36381
PAST100379 Onion yellows phytoplasma0
PARS340102 ncbi Pyrobaculum arsenaticum DSM 135141
PAER178306 ncbi Pyrobaculum aerophilum IM21
PABY272844 ncbi Pyrococcus abyssi GE51
NSP387092 ncbi Nitratiruptor sp. SB155-20
NSEN222891 ncbi Neorickettsia sennetsu Miyayama1
NPHA348780 ncbi Natronomonas pharaonis DSM 21600
MTHE349307 ncbi Methanosaeta thermophila PT1
MTHE187420 ncbi Methanothermobacter thermautotrophicus Delta H1
MSYN262723 ncbi Mycoplasma synoviae 530
MSTA339860 ncbi Methanosphaera stadtmanae DSM 30911
MSED399549 ncbi Metallosphaera sedula DSM 53481
MPUL272635 ncbi Mycoplasma pulmonis UAB CTIP0
MPNE272634 ncbi Mycoplasma pneumoniae M1290
MPEN272633 ncbi Mycoplasma penetrans HF-20
MMYC272632 ncbi Mycoplasma mycoides mycoides SC str. PG10
MMOB267748 ncbi Mycoplasma mobile 163K0
MMAZ192952 ncbi Methanosarcina mazei Go11
MMAR444158 ncbi Methanococcus maripaludis C60
MMAR426368 ncbi Methanococcus maripaludis C70
MMAR402880 ncbi Methanococcus maripaludis C50
MMAR368407 ncbi Methanoculleus marisnigri JR10
MMAR267377 ncbi Methanococcus maripaludis S20
MLAB410358 ncbi Methanocorpusculum labreanum Z0
MKAN190192 ncbi Methanopyrus kandleri AV191
MJAN243232 ncbi Methanocaldococcus jannaschii DSM 26610
MHYO295358 ncbi Mycoplasma hyopneumoniae 2320
MHYO262722 ncbi Mycoplasma hyopneumoniae 74480
MHYO262719 ncbi Mycoplasma hyopneumoniae J0
MHUN323259 ncbi Methanospirillum hungatei JF-10
MGEN243273 ncbi Mycoplasma genitalium G370
MFLO265311 ncbi Mesoplasma florum L10
MCAP340047 ncbi Mycoplasma capricolum capricolum ATCC 273430
MBUR259564 ncbi Methanococcoides burtonii DSM 62421
MBAR269797 ncbi Methanosarcina barkeri Fusaro1
MART243272 ncbi Mycoplasma arthritidis 158L3-10
MAEO419665 ncbi Methanococcus aeolicus Nankai-30
MACE188937 ncbi Methanosarcina acetivorans C2A1
LINT267671 ncbi Leptospira interrogans serovar Copenhageni str. Fiocruz L1-1301
LINT189518 ncbi Leptospira interrogans serovar Lai str. 566011
LHEL405566 ncbi Lactobacillus helveticus DPC 45711
LBRE387344 ncbi Lactobacillus brevis ATCC 3671
LBIF456481 ncbi Leptospira biflexa serovar Patoc strain Patoc 1 (Paris)0
LBIF355278 ncbi Leptospira biflexa serovar Patoc strain Patoc 1 (Ames)0
IHOS453591 ncbi Ignicoccus hospitalis KIN4/I1
HWAL362976 ncbi Haloquadratum walsbyi DSM 167900
HSP64091 ncbi Halobacterium sp. NRC-10
HSAL478009 ncbi Halobacterium salinarum R10
HPYL85963 ncbi Helicobacter pylori J990
HPYL357544 ncbi Helicobacter pylori HPAG10
HPY ncbi Helicobacter pylori 266950
HMUK485914 ncbi Halomicrobium mukohataei DSM 122860
HMAR272569 ncbi Haloarcula marismortui ATCC 430490
HHEP235279 ncbi Helicobacter hepaticus ATCC 514490
HBUT415426 ncbi Hyperthermus butylicus DSM 54561
HAUR316274 ncbi Herpetosiphon aurantiacus ATCC 237791
HACI382638 ncbi Helicobacter acinonychis Sheeba0
GFOR411154 ncbi Gramella forsetii KT08031
FSP1855 Frankia sp. EAN1pec1
FSP106370 ncbi Frankia sp. CcI31
FJOH376686 ncbi Flavobacterium johnsoniae UW1011
FALN326424 ncbi Frankia alni ACN14a1
ERUM302409 ncbi Ehrlichia ruminantium Gardel1
ERUM254945 ncbi Ehrlichia ruminantium Welgevonden1
DGEO319795 ncbi Deinococcus geothermalis DSM 113001
CTRA471473 ncbi Chlamydia trachomatis L2b/UCH-1/proctitis1
CTRA471472 ncbi Chlamydia trachomatis 434/Bu1
CTEP194439 ncbi Chlorobium tepidum TLS1
CSUL444179 ncbi Candidatus Sulcia muelleri GWSS0
CPRO264201 ncbi Candidatus Protochlamydia amoebophila UWE251
CPNE182082 ncbi Chlamydophila pneumoniae TW-1830
CPNE138677 ncbi Chlamydophila pneumoniae J1380
CPNE115713 ncbi Chlamydophila pneumoniae CWL0290
CPNE115711 ncbi Chlamydophila pneumoniae AR390
CMUR243161 ncbi Chlamydia muridarum Nigg1
CMET456442 ncbi Candidatus Methanoregula boonei 6A80
CMAQ397948 ncbi Caldivirga maquilingensis IC-1671
CKOR374847 ncbi Candidatus Korarchaeum cryptofilum OPF81
CJEJ407148 ncbi Campylobacter jejuni jejuni 811160
CJEJ360109 ncbi Campylobacter jejuni doylei 269.970
CJEJ354242 ncbi Campylobacter jejuni jejuni 81-1760
CJEJ195099 ncbi Campylobacter jejuni RM12210
CJEJ192222 ncbi Campylobacter jejuni jejuni NCTC 111680
CHUT269798 ncbi Cytophaga hutchinsonii ATCC 334061
CHOM360107 ncbi Campylobacter hominis ATCC BAA-3811
CFET360106 ncbi Campylobacter fetus fetus 82-401
CFEL264202 ncbi Chlamydophila felis Fe/C-561
CCUR360105 ncbi Campylobacter curvus 525.921
CCHL340177 ncbi Chlorobium chlorochromatii CaD31
CCAV227941 ncbi Chlamydophila caviae GPIC0
CABO218497 ncbi Chlamydophila abortus S26/30
BXEN266265 ncbi Burkholderia xenovorans LB4001
BTUR314724 ncbi Borrelia turicatae 91E1351
BTHE226186 ncbi Bacteroides thetaiotaomicron VPI-54821
BHER314723 ncbi Borrelia hermsii DAH1
BGAR290434 ncbi Borrelia garinii PBi1
BFRA295405 ncbi Bacteroides fragilis YCH461
BFRA272559 ncbi Bacteroides fragilis NCTC 93431
BBUR224326 ncbi Borrelia burgdorferi B311
BAPH372461 ncbi Buchnera aphidicola Cc (Cinara cedri)0
BAFZ390236 ncbi Borrelia afzelii PKo1
AYEL322098 ncbi Aster yellows witches-broom phytoplasma AYWB0
AURANTIMONAS Aurantimonas manganoxydans SI85-9A10
APHA212042 ncbi Anaplasma phagocytophilum HZ1
APER272557 ncbi Aeropyrum pernix K11
ANAE240017 Actinomyces oris MG11
AMAR234826 ncbi Anaplasma marginale St. Maries0
ALAI441768 ncbi Acholeplasma laidlawii PG-8A1
AFUL224325 ncbi Archaeoglobus fulgidus DSM 43041
ABUT367737 ncbi Arcobacter butzleri RM40180


Names of the homologs of the genes in the group in each of these orgs
  EG11192   EG10966   EG10965   EG10899   EG10863   EG10723   
WSUC273121 WS0188
UURE95667
UURE95664
UPAR505682
UMET351160 RCIX2124
TWHI218496 TW0610
TWHI203267 TW622
TVOL273116 TVN0307
TPEN368408 TPEN_0581
TPAL243276
TMAR243274 TM_1691
TKOD69014 TK1634
TDEN326298
TDEN243275 TDE_1086
TACI273075 TA1293
STOK273063 ST0443
SSP387093 SUN_2210
SSOL273057 SSO0735
SRUB309807 SRU_0031
SMAR399550 SMAR_0859
SACI330779 SACI_0610
PTOR263820 PTO0394
PRUM264731 GFRORF2548
PMAR167542 P9515ORF_0565
PLUT319225 PLUT_1774
PISL384616 PISL_0836
PINT246198 PIN_A0243
PHOR70601 PH1549
PGIN242619 PG_0513
PFUR186497 PF1568
PAST100379
PARS340102 PARS_1937
PAER178306 PAE2207
PABY272844 PAB0420
NSP387092
NSEN222891 NSE_0726
NPHA348780
MTHE349307 MTHE_1362
MTHE187420 MTH683
MSYN262723
MSTA339860 MSP_1251
MSED399549 MSED_0077
MPUL272635
MPNE272634
MPEN272633
MMYC272632
MMOB267748
MMAZ192952 MM2623
MMAR444158
MMAR426368
MMAR402880
MMAR368407
MMAR267377
MLAB410358
MKAN190192 MK0381
MJAN243232
MHYO295358
MHYO262722
MHYO262719
MHUN323259
MGEN243273
MFLO265311
MCAP340047
MBUR259564 MBUR_0199
MBAR269797 MBAR_A2506
MART243272
MAEO419665
MACE188937 MA1776
LINT267671 LIC_11012
LINT189518 LA3084
LHEL405566 LHV_1011
LBRE387344 LVIS_0728
LBIF456481
LBIF355278
IHOS453591 IGNI_0210
HWAL362976
HSP64091
HSAL478009
HPYL85963
HPYL357544
HPY
HMUK485914
HMAR272569
HHEP235279
HBUT415426 HBUT_0571
HAUR316274 HAUR_4475
HACI382638
GFOR411154 GFO_3433
FSP1855 FRANEAN1_5650
FSP106370 FRANCCI3_0870
FJOH376686 FJOH_0741
FALN326424 FRAAL1503
ERUM302409 ERGA_CDS_02990
ERUM254945 ERWE_CDS_03050
DGEO319795 DGEO_2086
CTRA471473 CTLON_0214
CTRA471472 CTL0214
CTEP194439 CT_0246
CSUL444179
CPRO264201 PC0660
CPNE182082
CPNE138677
CPNE115713
CPNE115711
CMUR243161 TC_0230
CMET456442
CMAQ397948 CMAQ_0167
CKOR374847 KCR_1370
CJEJ407148
CJEJ360109
CJEJ354242
CJEJ195099
CJEJ192222
CHUT269798 CHU_0138
CHOM360107 CHAB381_1251
CFET360106 CFF8240_1436
CFEL264202 CF0252
CCUR360105 CCV52592_1256
CCHL340177 CAG_1457
CCAV227941
CABO218497
BXEN266265 BXE_B2176
BTUR314724 BT0818
BTHE226186 BT_2008
BHER314723 BH0818
BGAR290434 BG0843
BFRA295405 BF3706
BFRA272559 BF3499
BBUR224326 BB_0818
BAPH372461
BAFZ390236 BAPKO_0871
AYEL322098
AURANTIMONAS
APHA212042 APH_0170
APER272557 APE1447
ANAE240017 ANA_0361
AMAR234826
ALAI441768 ACL_0304
AFUL224325 AF_0493
ABUT367737


Organism features enriched in list (features available for 133 out of the 140 orgs in the list)
Feature    Pvalue       Num occurrences in list  Total num occurrences  
Arrangment:Aggregates 0.005133269
Arrangment:Chains 0.00088131092
Arrangment:Pairs 1.239e-68112
Arrangment:Singles 0.000167483286
Disease:Pharyngitis 6.212e-688
Disease:bronchitis_and_pneumonitis 6.212e-688
Endospores:No 1.027e-978211
GC_Content_Range4:0-40 0.000036468213
GC_Content_Range4:60-100 1.712e-712145
GC_Content_Range7:0-30 6.871e-62447
GC_Content_Range7:40-50 0.001224939117
GC_Content_Range7:50-60 0.002493314107
GC_Content_Range7:60-70 1.308e-710134
Genome_Size_Range5:0-2 2.297e-2281155
Genome_Size_Range5:4-6 1.239e-1310184
Genome_Size_Range9:0-1 4.809e-112227
Genome_Size_Range9:1-2 1.239e-1159128
Genome_Size_Range9:3-4 0.00935911077
Genome_Size_Range9:4-5 2.479e-6696
Genome_Size_Range9:5-6 5.575e-7488
Gram_Stain:Gram_Pos 8.568e-127150
Habitat:Host-associated 0.006421658206
Habitat:Multiple 6.551e-621178
Habitat:Specialized 0.00002532553
Habitat:Terrestrial 0.0025070131
Optimal_temp.:37 0.002614035106
Optimal_temp.:85 0.002614844
Oxygen_Req:Anaerobic 6.438e-845102
Oxygen_Req:Facultative 4.751e-723201
Oxygen_Req:Microaerophilic 0.00036801118
Salinity:Extreme_halophilic 0.000704367
Shape:Irregular_coccus 1.063e-81517
Shape:Rod 3.754e-1540347
Shape:Sphere 1.252e-81619
Shape:Spiral 8.604e-122634
Temp._range:Hyperthermophilic 1.175e-81823
Temp._range:Mesophilic 0.000672495473



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ORGANISMS ENRICHED FOR GROUP:




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ORGANISMS DEPLETED FOR GROUP:




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PHYLOGENETIC PROFILE SIMILARITY WITH KNOWN PATHWAYS:

Pathways or complexes with absolute value of Pearson coefficient with respect to candidate larger than 0.4 are listed below
The candidate is assumed to exist in orgs listed in section List of organisms containing most genes from the group


Pathway or complex  # Orgs containing it  # of those orgs also containing candidate  Pearson Coeff  
GLYCOCAT-PWY (glycogen degradation I)2461930.7120
COBALSYN-PWY (adenosylcobalamin salvage from cobinamide I)1951680.7032
PWY-5111 (CMP-KDO biosynthesis II (from D-arabinose 5-phosphate))3002090.6732
PWY0-1241 (ADP-L-glycero-β-D-manno-heptose biosynthesis)2181740.6675
3-HYDROXYPHENYLACETATE-DEGRADATION-PWY (4-hydroxyphenylacetate degradation)1491380.6595
KDO-LIPASYN-PWY (KDO2-lipid A biosynthesis I)2251730.6382
PWY-1269 (CMP-KDO biosynthesis I)3252100.6196
PWY-5918 (heme biosynthesis I)2721890.6116
PWY4FS-7 (phosphatidylglycerol biosynthesis I (plastidic))2911950.6022
PWY0-1319 (CDP-diacylglycerol biosynthesis II)2961960.5962
HEME-BIOSYNTHESIS-II (heme biosynthesis from uroporphyrinogen-III I)2861910.5882
PWY-4041 (γ-glutamyl cycle)2791880.5862
NAGLIPASYN-PWY (lipid IVA biosynthesis)3482120.5809
PHOSLIPSYN-PWY (phospholipid biosynthesis I)2901910.5779
TYRFUMCAT-PWY (tyrosine degradation I)1841450.5754
GLUTATHIONESYN-PWY (glutathione biosynthesis)3392070.5674
LIPA-CORESYN-PWY (Lipid A-core biosynthesis)1761400.5673
PWY-5857 (ubiquinone-10 biosynthesis (prokaryotic))1831430.5643
ECASYN-PWY (enterobacterial common antigen biosynthesis)1911460.5582
PWY-5913 (TCA cycle variation IV)3011910.5503
PWY-5855 (ubiquinone-7 biosynthesis (prokaryotic))1911430.5365
PWY-5028 (histidine degradation II)1301100.5185
PWY-5148 (acyl-CoA hydrolysis)2271560.5140
PWY0-845 (superpathway of pyridoxal 5'-phosphate biosynthesis and salvage)3291950.5099
GDPRHAMSYN-PWY (GDP-D-rhamnose biosynthesis)1561220.5064
ENTNER-DOUDOROFF-PWY (Entner-Doudoroff pathway I)2491640.5053
GLYCOLYSIS-E-D (superpathway of glycolysis and Entner-Doudoroff)2491640.5053
PWY-5856 (ubiquinone-9 biosynthesis (prokaryotic))2551660.5023
AST-PWY (arginine degradation II (AST pathway))1201020.4971
GLUCONSUPER-PWY (D-gluconate degradation)2291540.4941
PWY-5386 (methylglyoxal degradation I)3051840.4937
P344-PWY (acrylonitrile degradation)2101450.4889
UBISYN-PWY (ubiquinol-8 biosynthesis (prokaryotic))3982110.4679
PWY-5669 (phosphatidylethanolamine biosynthesis I)4162160.4665
CHOLINE-BETAINE-ANA-PWY (choline degradation I)1351060.4643
REDCITCYC (TCA cycle variation II)1741250.4630
BETSYN-PWY (glycine betaine biosynthesis I (Gram-negative bacteria))1381070.4600
GALACTARDEG-PWY (D-galactarate degradation I)1511130.4559
PYRIDOXSYN-PWY (pyridoxal 5'-phosphate biosynthesis I)4222160.4546
GALACTITOLCAT-PWY (galactitol degradation)73700.4534
DAPLYSINESYN-PWY (lysine biosynthesis I)3421910.4532
PWY0-541 (cyclopropane fatty acid (CFA) biosynthesis)3001760.4525
GALACTCAT-PWY (D-galactonate degradation)104880.4520
P184-PWY (protocatechuate degradation I (meta-cleavage pathway))94820.4486
PWY0-1329 (succinate to cytochrome bo oxidase electron transfer)96830.4473
GLUCARDEG-PWY (D-glucarate degradation I)1521120.4443
PWY-3162 (tryptophan degradation V (side chain pathway))94810.4393
PLPSAL-PWY (pyridoxal 5'-phosphate salvage pathway)3741990.4361
P601-PWY (D-camphor degradation)95810.4340
PWY0-862 (cis-dodecenoyl biosynthesis)3431880.4308
PWY-5084 (2-ketoglutarate dehydrogenase complex)3261810.4233
PWY0-1335 (NADH to cytochrome bo oxidase electron transfer)112890.4225
SULFATE-CYS-PWY (superpathway of sulfate assimilation and cysteine biosynthesis)3651940.4218
KDOSYN-PWY (KDO transfer to lipid IVA I)1801220.4202
PWY-5964 (molybdopterin guanine dinucleotide biosynthesis)2901670.4171
KDO-NAGLIPASYN-PWY (superpathway of KDO2-lipid A biosynthesis)1791210.4162
GLUCARGALACTSUPER-PWY (superpathway of D-glucarate and D-galactarate degradation)1351000.4156
PWY-5755 (4-hydroxybenzoate biosynthesis II (bacteria and fungi))81710.4148
PWY-46 (putrescine biosynthesis III)1381010.4117
PWY-5340 (sulfate activation for sulfonation)3851980.4055
VALDEG-PWY (valine degradation I)2901650.4037
PWY-6087 (4-chlorocatechol degradation)2231380.4005



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PAIRWISE GENOME CONTEXT SCORE MATRIX:

  EG10966   EG10965   EG10899   EG10863   EG10723   
EG111920.9994750.9999410.9996250.9997150.999289
EG109660.9997190.9999070.9993760.99931
EG109650.999870.9993590.999732
EG108990.9993920.999486
EG108630.998555
EG10723



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PAIRWISE BLAST SCORES:

  EG11192   EG10966   EG10965   EG10899   EG10863   EG10723   
EG111920.0f0-----
EG10966-0.0f0----
EG10965--0.0f0---
EG10899---0.0f0--
EG10863----0.0f0-
EG10723--1.4e-5--0.0f0



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PATHWAYS OR PROTEIN COMPLEX MATCHES IN TARGET ORG:

For each case, all genes involved in the pathway or complex are listed. For each gene we list: a tag indicating whether the gene is part of the candidate list or not, the average and the minimum scores of the gene to the candidate list, the gene name, and its product names.

- PRPP-PWY (superpathway of histidine, purine, and pyrimidine biosynthesis) (degree of match pw to cand: 0.036, degree of match cand to pw: 0.333, average score: 0.550)
  Genes in pathway or complex:
             0.0990 0.0002 EG10449 (hisG) ATPPHOSRIBOSTRANS-MONOMER (HisG)
             0.2849 0.0664 EG10451 (hisI) HISTCYCLOPRATPPHOS (phosphoribosyl-AMP cyclohydrolase / phosphoribosyl-ATP pyrophosphatase)
             0.2312 0.0026 EG10444 (hisA) PRIBFAICARPISOM-MONOMER (N-(5'-phospho-L-ribosyl-formimino)-5-amino-1-(5'-phosphoribosyl)-4-imidazolecarboxamide isomerase)
             0.1981 0.1210 EG10448 (hisF) CYCLASE-MONOMER (imidazole glycerol phosphate synthase, HisF subunit)
             0.2184 0.0925 EG10450 (hisH) GLUTAMIDOTRANS-MONOMER (imidazole glycerol phosphate synthase, HisH subunit)
             0.3313 0.0875 EG10445 (hisB) IMIDPHOSPHADEHYDHISTIDPHOSPHA-MONOMER (HisB)
             0.0410 0.0030 EG10446 (hisC) HISTPHOSTRANS-MONOMER (HisC)
             0.0982 0.0015 EG10447 (hisD) HISTDEHYD-MONOMER (HisD)
             0.4618 0.1716 EG10790 (purA) ADENYLOSUCCINATE-SYN-MONOMER (PurA)
             0.0448 0.0011 EG11314 (purB) ASL-MONOMER (5'-phosphoribosyl-4-(N-succinocarboxamide)-5-aminoimidazole lyase [multifunctional])
             0.1678 0.0747 EG10032 (adk) ADENYL-KIN-MONOMER (adenylate kinase)
             0.1155 0.0541 EG10661 (nrdB) NRDB-MONOMER (NrdB)
             0.1155 0.0442 EG10660 (nrdA) NRDA-MONOMER (NrdA)
             0.5949 0.2623 EG11417 (nrdD) RIBONUCLEOSIDE-TRIP-REDUCT-MONOMER (ribonucleoside-triphosphate reductase)
             0.2229 0.0682 EG12381 (nrdF) NRDF-MONOMER (NrdF)
             0.2838 0.0941 EG20257 (nrdE) NRDE-MONOMER (NrdE)
             0.9466 0.8850 EG10100 (atpC) ATPC-MONOMER (ATP synthase, F1 complex, ε subunit)
             0.9549 0.9063 EG10105 (atpH) ATPH-MONOMER (ATP synthase, F1 complex, δ subunit)
             0.9597 0.9238 EG10098 (atpA) ATPA-MONOMER (ATP synthase, F1 complex, α subunit)
             0.9660 0.9129 EG10104 (atpG) ATPG-MONOMER (ATP synthase, F1 complex, γ subunit)
             0.9649 0.9267 EG10101 (atpD) ATPD-MONOMER (ATP synthase, F1 complex, β subunit)
             0.9910 0.9734 EG10102 (atpE) ATPE-MONOMER (ATP synthase, F0 complex, c subunit)
             0.9766 0.9452 EG10103 (atpF) ATPF-MONOMER (ATP synthase, F0 complex, b subunit)
             0.9688 0.9425 EG10099 (atpB) ATPB-MONOMER (ATP synthase, F0 complex, a subunit)
             0.4335 0.1881 EG10421 (guaB) IMP-DEHYDROG-MONOMER (GuaB)
             0.3016 0.0404 EG10420 (guaA) GMP-SYN-MONOMER (GMP synthetase)
   *in cand* 0.9998 0.9994 EG10965 (gmk) GUANYL-KIN-MONOMER (Gmk)
             0.3079 0.0931 EG10791 (purC) SAICARSYN-MONOMER (PurC)
             0.8075 0.6416 EG10795 (purH) AICARTRANSIMPCYCLO-CPLX (AICAR transformylase / IMP cyclohydrolase)
             0.5922 0.2887 EG10793 (purE) PURE-MONOMER (PurE)
             0.5504 0.3113 EG10796 (purK) PURK-MONOMER (N5-carboxyaminoimidazole ribonucleotide synthetase monomer)
             0.4457 0.0025 EG10794 (purF) PRPPAMIDOTRANS-MONOMER (PurF)
             0.9387 0.9150 EG10792 (purD) GLYCRIBONUCSYN-MONOMER (phosphoribosylamine-glycine ligase)
             0.4173 0.0859 EG10797 (purL) FGAMSYN-MONOMER (phosphoribosylformylglycinamide synthetase)
             0.4797 0.0471 EG10798 (purM) AIRS-MONOMER (PurM)
             0.0212 0.0003 EG11809 (purT) GARTRANSFORMYL2-MONOMER (phosphoribosylglycinamide formyltransferase 2)
             0.6454 0.0011 EG11539 (pyrH) UMPKI-MONOMER (PyrH)
             0.4999 0.3389 EG10810 (pyrG) CTPSYN-MONOMER (PyrG)
             0.4703 0.0449 EG10650 (ndk) NUCLEOSIDE-DIP-KIN-MONOMER (Ndk)
             0.5894 0.1633 EG10134 (carA) CARBPSYN-SMALL (CarA)
             0.6360 0.2105 EG10135 (carB) CARBPSYN-LARGE (CarB)
             0.9034 0.8064 EG10811 (pyrI) ASPCARBREG-MONOMER (aspartate carbamoyltransferase, PyrI subunit)
             0.9234 0.7248 EG10805 (pyrB) ASPCARBCAT-MONOMER (aspartate carbamoyltransferase, PyrB subunit)
             0.2252 0.0686 EG10806 (pyrC) DIHYDROOROT-MONOMER (PyrC)
             0.9979 0.9934 EG10808 (pyrE) OROPRIBTRANS-MONOMER (PyrE)
             0.5232 0.0008 EG10809 (pyrF) OROTPDECARB-MONOMER (PyrF)
             0.3243 0.0003 EG10807 (pyrD) DIHYDROOROTOX-MONOMER (dihydroorotate dehydrogenase)
             0.0427 0.0015 EG10774 (prs) PRPPSYN-MONOMER (ribose-phosphate diphosphokinase)
   *in cand* 0.9994 0.9986 EG10723 (phnN) EG10723-MONOMER (ribose 1,5-bisphosphokinase)
             0.6324 0.3526 EG10220 (deoB) PPENTOMUT-MONOMER (phosphopentomutase)
             0.4892 0.2848 G7401 (nrdH) G7401-MONOMER (glutaredoxin-like protein)
             0.1100 0.0324 EG10318 (fldA) OX-FLAVODOXIN1 (oxidized flavodoxin 1)
             0.2944 0.0868 EG12697 (fldB) OX-FLAVODOXIN2 (oxidized flavodoxin 2)
             0.9622 0.8836 EG11031 (trxA) OX-THIOREDOXIN-MONOMER (oxidized thioredoxin)
             0.7500 0.4621 EG11887 (trxC) OX-THIOREDOXIN2-MONOMER (oxidized thioredoxin 2)
  Genes in candidate but not in this pathway or complex:
   *in cand* 0.9994 0.9986 EG10863 (rph) EG10863-MONOMER (RNase PH monomer)
   *in cand* 0.9997 0.9994 EG10899 (rpoZ) EG10899-MONOMER (RNA polymerase, ω subunit)
   *in cand* 0.9996 0.9993 EG10966 (spoT) SPOT-MONOMER (guanosine 3'-diphosphate 5'-triphosphate 3'-diphosphatase [multifunctional])
   *in cand* 0.9997 0.9993 EG11192 (yicC) EG11192-MONOMER (conserved protein)
   This pathway has holes



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GENOME CONTEXT INFORMATION:

Each row corresponds to a replicon in an organism, each column to a gene in the candidate. The second column indicates whether the organims was included in the list used to compute the genome context scores or not. Some organisms are not included because they are phylogenetically too similar to others already in the list.
The number in the matrix indicate the position of the homolog of the gene in the replicon. All numbers are relative to the smaller one, which is assigned a position of zero. Two columns with the same number indicate that the two genes matched the same gene in that organism.

Genome browser links for gene clusters

The links below opens a genome browser BioCyc page for each cluster of genes in the target genome. These pages shows the central gene of the cluster in the target genome and its best homolog in the reference genomes, for the genomes that contain homologs for at least 75% of the genes in the group. Only one genome per phylogenetic cluster of organisms is shown, to keep the list smaller.

EG10899 EG10965 EG10966 (centered at EG10899)
EG10863 EG11192 (centered at EG11192)
EG10723 (centered at EG10723)


ORG:REPLICON:CIRC?\GENE  IN REF LIST  EG11192   EG10966   EG10965   EG10899   EG10863   EG10723   
327/623411/623416/623266/623406/623225/623
AAEO224324:0:Tyes048--107-
AAUR290340:2:Tyes-0--263-
AAVE397945:0:Tyes364504
ABAC204669:0:Tyes363203630-1452-
ABAU360910:0:Tyes1201819018
ABOR393595:0:Tyes2902130-
ACAU438753:0:Tyes31057583106030772170
ACEL351607:0:Tyes-0--346-
ACRY349163:8:Tyes9161915011322403
ADEH290397:0:Tyes610601053823-
AEHR187272:0:Tyes302142
AFER243159:0:Tyes1696169316951694052
AFUL224325:0:Tyes----0-
AHYD196024:0:Tyes40320214031-
ALAI441768:0:Tyes--0---
AMAR329726:9:Tyes-02958-336-
AMET293826:0:Tyes179513601793-0-
ANAE240017:0:Tyes----0-
AORE350688:0:Tyes8591148861-0-
APER272557:0:Tyes----0-
APHA212042:0:Tyes--0---
APLE416269:0:Tyes1181821118190211
APLE434271:0:Tno1182521318260213
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