CANDIDATE ID: 409

CANDIDATE ID: 409

NUMBER OF GENES: 6
AVERAGE SCORE:    9.9961413e-1 (range=[0.0,1.0])
AVERAGE MINIMUM BLAST P-VAL:    1.0000000e+0

Gene List
List of organisms containing most genes from the group
    Phylogenetic tree highlighting these organisms (opens new page)
List of organisms containing very few or no genes from the group
List of organisms enriched for group
List of organisms depleted for group
Phylogenetic profile similarity with known pathways
Pairwise genome context scores
Pairwise Blast scores
Pathway or protein complex matches in target organism
Genome context matrix
    Genes and their orthologs in genome browser BioCyc pages



GENE LIST:

- G6234 (thiL) (b0417)
   Products of gene:
     - THI-P-KIN-MONOMER (thiamine monophosphate kinase)
       Reactions:
        thiamine-phosphate + ATP  ->  thiamine diphosphate + ADP + H+
         In pathways
         THISYN-PWY (thiamin biosynthesis I)

- EG11406 (ribC) (b1662)
   Products of gene:
     - RIBOFLAVIN-SYN-MONOMER (RibC)
     - CPLX0-3952 (riboflavin synthase)
       Reactions:
        2 6,7-dimethyl-8-(1-D-ribityl)lumazine + H+  ->  5-amino-6-(D-ribitylamino)uracil + riboflavin
         In pathways
         RIBOSYN2-PWY (flavin biosynthesis I (bacteria and plants))
         PWY-6167 (PWY-6167)
         PWY-6168 (PWY-6168)

- EG11322 (ribE) (b0415)
   Products of gene:
     - LUMAZINESYN-MONOMER (RibE)
     - LUMAZINESYN-CPLX (6,7-dimethyl-8-ribityllumazine synthase)
       Reactions:
        5-amino-6-(D-ribitylamino)uracil + 1-deoxy-L-glycero-tetrulose 4-phosphate  ->  6,7-dimethyl-8-(1-D-ribityl)lumazine + phosphate + 2 H2O + H+
         In pathways
         RIBOSYN2-PWY (flavin biosynthesis I (bacteria and plants))
         PWY-6167 (PWY-6167)
         PWY-6168 (PWY-6168)

- EG11321 (ribD) (b0414)
   Products of gene:
     - RIBOFLAVINSYNDEAM-MONOMER (fused diaminohydroxyphosphoribosylaminopyrimidine deaminase / 5-amino-6-(5-phosphoribosylamino)uracil reductase)
     - CPLX0-7659 (fused diaminohydroxyphosphoribosylaminopyrimidine deaminase / 5-amino-6-(5-phosphoribosylamino)uracil reductase)
       Reactions:
        2,5-diamino-6-(5-phospho-D-ribosylamino)pyrimidin-4(3H)-one + H2O  ->  5-amino-6-(5'-phosphoribosylamino)uracil + ammonia
         In pathways
         RIBOSYN2-PWY (flavin biosynthesis I (bacteria and plants))
        5-amino-6-(5'-phosphoribosylamino)uracil + NADPH + H+  ->  5-amino-6-(5-phospho-D-ribosylamino)uracil + NADP+
         In pathways
         RIBOSYN2-PWY (flavin biosynthesis I (bacteria and plants))

- EG11320 (nrdR) (b0413)
   Products of gene:
     - EG11320-MONOMER (NrdR)
     - CPLX0-8061 (NrdR-Zn2+ transcriptional repressor)
       Regulatees:
        TU0-1022 (nrdHIEF)
        TU00047 (nrdAB)
        TU0-4783 (nrdDG)

- EG10666 (nusB) (b0416)
   Products of gene:
     - EG10666-MONOMER (transcription antitermination protein NusB)
     - CPLX0-7879 (NusB-NusE complex)



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ORGANISMS CONTAINING AT LEAST 5 GENES FROM THE GROUP:

Total number of orgs: 294
Effective number of orgs (counting one per cluster within 468 clusters): 204

Organism list
Homologs in each organism in the list
Features enriched in organism list


Follow (ncbi) link, when present, to find the set of organism features for each organism
Org ID  Org Name  # genes in group found in org  
YPSE349747 ncbi Yersinia pseudotuberculosis IP 317586
YPSE273123 ncbi Yersinia pseudotuberculosis IP 329536
YPES386656 ncbi Yersinia pestis Pestoides F6
YPES377628 ncbi Yersinia pestis Nepal5166
YPES360102 ncbi Yersinia pestis Antiqua6
YPES349746 ncbi Yersinia pestis Angola6
YPES214092 ncbi Yersinia pestis CO926
YPES187410 ncbi Yersinia pestis KIM 106
YENT393305 ncbi Yersinia enterocolitica enterocolitica 80816
XORY360094 ncbi Xanthomonas oryzae pv. oryzae PXO99A6
XORY342109 ncbi Xanthomonas oryzae pv. oryzae MAFF 3110186
XORY291331 ncbi Xanthomonas oryzae pv. oryzae KACC103316
XFAS405440 ncbi Xylella fastidiosa M126
XFAS183190 ncbi Xylella fastidiosa Temecula16
XFAS160492 ncbi Xylella fastidiosa 9a5c6
XCAM487884 Xanthomonas campestris pv. paulliniae6
XCAM316273 ncbi Xanthomonas campestris pv. vesicatoria str. 85-106
XCAM314565 ncbi Xanthomonas campestris pv. campestris str. 80046
XCAM190485 ncbi Xanthomonas campestris pv. campestris str. ATCC 339136
XAXO190486 ncbi Xanthomonas axonopodis pv. citri str. 3066
XAUT78245 ncbi Xanthobacter autotrophicus Py25
VVUL216895 ncbi Vibrio vulnificus CMCP66
VVUL196600 ncbi Vibrio vulnificus YJ0166
VPAR223926 ncbi Vibrio parahaemolyticus RIMD 22106336
VFIS312309 ncbi Vibrio fischeri ES1146
VEIS391735 ncbi Verminephrobacter eiseniae EF01-26
VCHO345073 ncbi Vibrio cholerae O3956
VCHO ncbi Vibrio cholerae O1 biovar El Tor str. N169616
TTUR377629 ncbi Teredinibacter turnerae T79016
TTHE300852 ncbi Thermus thermophilus HB85
TTHE262724 ncbi Thermus thermophilus HB275
TSP1755 Thermoanaerobacter sp.5
TROS309801 ncbi Thermomicrobium roseum DSM 51596
TPSE340099 ncbi Thermoanaerobacter pseudethanolicus ATCC 332235
TDEN292415 ncbi Thiobacillus denitrificans ATCC 252595
TCRU317025 ncbi Thiomicrospira crunogena XCL-26
SWOL335541 ncbi Syntrophomonas wolfei wolfei Goettingen5
STYP99287 ncbi Salmonella enterica enterica serovar Typhimurium str. LT26
SSP94122 ncbi Shewanella sp. ANA-36
SSON300269 ncbi Shigella sonnei Ss0466
SSED425104 ncbi Shewanella sediminis HAW-EB36
SPRO399741 ncbi Serratia proteamaculans 5686
SPNE488221 ncbi Streptococcus pneumoniae 705855
SPNE487214 ncbi Streptococcus pneumoniae Hungary19A-65
SPNE487213 ncbi Streptococcus pneumoniae Taiwan19F-145
SPNE171101 ncbi Streptococcus pneumoniae R65
SPNE170187 ncbi Streptococcus pneumoniae G545
SPNE1313 Streptococcus pneumoniae5
SPEA398579 ncbi Shewanella pealeana ATCC 7003456
SONE211586 ncbi Shewanella oneidensis MR-16
SLOI323850 ncbi Shewanella loihica PV-46
SHIGELLA ncbi Shigella flexneri 2a str. 2457T6
SHAL458817 ncbi Shewanella halifaxensis HAW-EB46
SGLO343509 ncbi Sodalis glossinidius morsitans6
SFUM335543 ncbi Syntrophobacter fumaroxidans MPOB5
SFLE373384 ncbi Shigella flexneri 5 str. 84016
SFLE198214 ncbi Shigella flexneri 2a str. 3016
SERY405948 ncbi Saccharopolyspora erythraea NRRL 23386
SENT454169 ncbi Salmonella enterica enterica serovar Heidelberg str. SL4766
SENT321314 ncbi Salmonella enterica enterica serovar Choleraesuis str. SC-B676
SENT295319 ncbi Salmonella enterica enterica serovar Paratyphi A str. ATCC 91506
SENT220341 ncbi Salmonella enterica enterica serovar Typhi str. CT185
SENT209261 ncbi Salmonella enterica enterica serovar Typhi str. Ty26
SELO269084 ncbi Synechococcus elongatus PCC 63015
SDYS300267 ncbi Shigella dysenteriae Sd1976
SDEN318161 ncbi Shewanella denitrificans OS2176
SDEG203122 ncbi Saccharophagus degradans 2-406
SCO ncbi Streptomyces coelicolor A3(2)5
SBOY300268 ncbi Shigella boydii Sb2276
SBAL402882 ncbi Shewanella baltica OS1856
SBAL399599 ncbi Shewanella baltica OS1956
SACI56780 ncbi Syntrophus aciditrophicus SB5
RXYL266117 ncbi Rubrobacter xylanophilus DSM 99415
RSP101510 ncbi Rhodococcus jostii RHA16
RSOL267608 ncbi Ralstonia solanacearum GMI10005
RPAL316056 ncbi Rhodopseudomonas palustris BisB185
RMET266264 ncbi Ralstonia metallidurans CH345
RFER338969 ncbi Rhodoferax ferrireducens T1185
REUT381666 ncbi Ralstonia eutropha H165
REUT264198 ncbi Ralstonia eutropha JMP1345
PTHE370438 ncbi Pelotomaculum thermopropionicum SI5
PSYR223283 ncbi Pseudomonas syringae pv. tomato str. DC30006
PSYR205918 ncbi Pseudomonas syringae pv. syringae B728a6
PSTU379731 ncbi Pseudomonas stutzeri A15016
PSP56811 Psychrobacter sp.6
PSP312153 ncbi Polynucleobacter necessarius asymbioticus QLW-P1DMWA-16
PSP296591 ncbi Polaromonas sp. JS6665
PSP117 Pirellula sp.5
PPUT76869 ncbi Pseudomonas putida GB-16
PPUT351746 ncbi Pseudomonas putida F16
PPUT160488 ncbi Pseudomonas putida KT24406
PPRO298386 ncbi Photobacterium profundum SS96
PNAP365044 ncbi Polaromonas naphthalenivorans CJ25
PMUL272843 ncbi Pasteurella multocida multocida Pm706
PMEN399739 ncbi Pseudomonas mendocina ymp6
PLUT319225 ncbi Chlorobium luteolum DSM 2735
PLUM243265 ncbi Photorhabdus luminescens laumondii TTO16
PING357804 ncbi Psychromonas ingrahamii 376
PHAL326442 ncbi Pseudoalteromonas haloplanktis TAC1256
PFLU220664 ncbi Pseudomonas fluorescens Pf-56
PFLU216595 ncbi Pseudomonas fluorescens SBW256
PFLU205922 ncbi Pseudomonas fluorescens Pf0-16
PENT384676 ncbi Pseudomonas entomophila L486
PCRY335284 ncbi Psychrobacter cryohalolentis K56
PCAR338963 ncbi Pelobacter carbinolicus DSM 23806
PATL342610 ncbi Pseudoalteromonas atlantica T6c6
PARC259536 ncbi Psychrobacter arcticus 273-46
PAER208964 ncbi Pseudomonas aeruginosa PAO16
PAER208963 ncbi Pseudomonas aeruginosa UCBPP-PA146
PACN267747 ncbi Propionibacterium acnes KPA1712025
OIHE221109 ncbi Oceanobacillus iheyensis HTE8316
OCAR504832 ncbi Oligotropha carboxidovorans OM55
NWIN323098 ncbi Nitrobacter winogradskyi Nb-2555
NSP35761 Nocardioides sp.5
NOCE323261 ncbi Nitrosococcus oceani ATCC 197076
NMUL323848 ncbi Nitrosospira multiformis ATCC 251966
NMEN374833 ncbi Neisseria meningitidis 0534425
NMEN272831 ncbi Neisseria meningitidis FAM185
NMEN122587 ncbi Neisseria meningitidis Z24915
NMEN122586 ncbi Neisseria meningitidis MC585
NGON242231 ncbi Neisseria gonorrhoeae FA 10905
NFAR247156 ncbi Nocardia farcinica IFM 101525
NEUT335283 ncbi Nitrosomonas eutropha C915
NEUR228410 ncbi Nitrosomonas europaea ATCC 197186
MXAN246197 ncbi Myxococcus xanthus DK 16226
MVAN350058 ncbi Mycobacterium vanbaalenii PYR-16
MTUB419947 ncbi Mycobacterium tuberculosis H37Ra5
MTUB336982 ncbi Mycobacterium tuberculosis F115
MTHE264732 ncbi Moorella thermoacetica ATCC 390735
MTBRV ncbi Mycobacterium tuberculosis H37Rv5
MTBCDC ncbi Mycobacterium tuberculosis CDC15515
MSUC221988 ncbi Mannheimia succiniciproducens MBEL55E6
MSP400668 ncbi Marinomonas sp. MWYL15
MSP189918 ncbi Mycobacterium sp. KMS5
MSP164757 ncbi Mycobacterium sp. JLS5
MSP164756 ncbi Mycobacterium sp. MCS5
MSME246196 ncbi Mycobacterium smegmatis MC2 1555
MPET420662 ncbi Methylibium petroleiphilum PM15
MGIL350054 ncbi Mycobacterium gilvum PYR-GCK6
MFLA265072 ncbi Methylobacillus flagellatus KT6
MCAP243233 ncbi Methylococcus capsulatus Bath6
MBOV410289 ncbi Mycobacterium bovis BCG str. Pasteur 1173P26
MBOV233413 ncbi Mycobacterium bovis AF2122/976
MAVI243243 ncbi Mycobacterium avium 1046
MAQU351348 ncbi Marinobacter aquaeolei VT86
LXYL281090 ncbi Leifsonia xyli xyli CTCB075
LSPH444177 ncbi Lysinibacillus sphaericus C3-415
LPNE400673 ncbi Legionella pneumophila Corby5
LPNE297246 ncbi Legionella pneumophila Paris5
LPNE297245 ncbi Legionella pneumophila Lens5
LPNE272624 ncbi Legionella pneumophila pneumophila Philadelphia 15
LCHO395495 ncbi Leptothrix cholodnii SP-65
KRAD266940 ncbi Kineococcus radiotolerans SRS302165
KPNE272620 ncbi Klebsiella pneumoniae pneumoniae MGH 785786
JSP375286 ncbi Janthinobacterium sp. Marseille5
ILOI283942 ncbi Idiomarina loihiensis L2TR6
HSOM228400 ncbi Haemophilus somnus 23366
HSOM205914 ncbi Haemophilus somnus 129PT6
HMOD498761 ncbi Heliobacterium modesticaldum Ice16
HINF71421 ncbi Haemophilus influenzae Rd KW206
HINF374930 ncbi Haemophilus influenzae PittEE6
HINF281310 ncbi Haemophilus influenzae 86-028NP6
HHAL349124 ncbi Halorhodospira halophila SL16
HDUC233412 ncbi Haemophilus ducreyi 35000HP6
HCHE349521 ncbi Hahella chejuensis KCTC 23966
HAUR316274 ncbi Herpetosiphon aurantiacus ATCC 237796
HARS204773 ncbi Herminiimonas arsenicoxydans5
GURA351605 ncbi Geobacter uraniireducens Rf46
GSUL243231 ncbi Geobacter sulfurreducens PCA6
GMET269799 ncbi Geobacter metallireducens GS-156
GKAU235909 ncbi Geobacillus kaustophilus HTA4265
FSUC59374 ncbi Fibrobacter succinogenes succinogenes S855
ESP42895 Enterobacter sp.6
EFER585054 ncbi Escherichia fergusonii ATCC 354696
ECOO157 ncbi Escherichia coli O157:H7 EDL9336
ECOL83334 Escherichia coli O157:H76
ECOL585397 ncbi Escherichia coli ED1a6
ECOL585057 ncbi Escherichia coli IAI396
ECOL585056 ncbi Escherichia coli UMN0266
ECOL585055 ncbi Escherichia coli 559896
ECOL585035 ncbi Escherichia coli S886
ECOL585034 ncbi Escherichia coli IAI16
ECOL481805 ncbi Escherichia coli ATCC 87396
ECOL469008 ncbi Escherichia coli BL21(DE3)6
ECOL439855 ncbi Escherichia coli SMS-3-56
ECOL413997 ncbi Escherichia coli B str. REL6066
ECOL409438 ncbi Escherichia coli SE116
ECOL405955 ncbi Escherichia coli APEC O15
ECOL364106 ncbi Escherichia coli UTI896
ECOL362663 ncbi Escherichia coli 5366
ECOL331111 ncbi Escherichia coli E24377A6
ECOL316407 ncbi Escherichia coli K-12 substr. W31106
ECOL199310 ncbi Escherichia coli CFT0736
ECAR218491 ncbi Pectobacterium atrosepticum SCRI10436
DVUL882 ncbi Desulfovibrio vulgaris Hildenborough5
DSP255470 ncbi Dehalococcoides sp. CBDB16
DSP216389 ncbi Dehalococcoides sp. BAV16
DRED349161 ncbi Desulfotomaculum reducens MI-16
DPSY177439 ncbi Desulfotalea psychrophila LSv546
DOLE96561 ncbi Desulfococcus oleovorans Hxd36
DNOD246195 ncbi Dichelobacter nodosus VCS1703A5
DHAF138119 ncbi Desulfitobacterium hafniense Y515
DETH243164 ncbi Dehalococcoides ethenogenes 1956
DDES207559 ncbi Desulfovibrio desulfuricans desulfuricans G205
DARO159087 ncbi Dechloromonas aromatica RCB6
CVIO243365 ncbi Chromobacterium violaceum ATCC 124726
CVES412965 ncbi Candidatus Vesicomyosocius okutanii HA5
CTET212717 ncbi Clostridium tetani E885
CSAL290398 ncbi Chromohalobacter salexigens DSM 30436
CRUT413404 ncbi Candidatus Ruthia magnifica Cm (Calyptogena magnifica)6
CPSY167879 ncbi Colwellia psychrerythraea 34H5
CPER289380 ncbi Clostridium perfringens SM1015
CPER195103 ncbi Clostridium perfringens ATCC 131245
CPER195102 ncbi Clostridium perfringens 135
CNOV386415 ncbi Clostridium novyi NT5
CMIC443906 ncbi Clavibacter michiganensis michiganensis NCPPB 3826
CMIC31964 ncbi Clavibacter michiganensis sepedonicus5
CKLU431943 ncbi Clostridium kluyveri DSM 5555
CJAP155077 Cellvibrio japonicus6
CHYD246194 ncbi Carboxydothermus hydrogenoformans Z-29016
CGLU196627 ncbi Corynebacterium glutamicum ATCC 130325
CEFF196164 ncbi Corynebacterium efficiens YS-3145
CDES477974 ncbi Candidatus Desulforudis audaxviator MP104C5
CCHL340177 ncbi Chlorobium chlorochromatii CaD35
CBUR434922 ncbi Coxiella burnetii Dugway 5J108-1116
CBUR360115 ncbi Coxiella burnetii RSA 3316
CBUR227377 ncbi Coxiella burnetii RSA 4936
CBOT536232 ncbi Clostridium botulinum A2 str. Kyoto5
CBOT515621 ncbi Clostridium botulinum Ba4 str. 6575
CBOT508765 ncbi Clostridium botulinum B str. Eklund 17B5
CBOT498213 ncbi Clostridium botulinum B1 str. Okra5
CBOT441772 ncbi Clostridium botulinum F str. Langeland5
CBOT441771 ncbi Clostridium botulinum A str. Hall5
CBOT441770 ncbi Clostridium botulinum A str. ATCC 193975
CBOT36826 Clostridium botulinum A5
CBEI290402 ncbi Clostridium beijerinckii NCIMB 80525
CACE272562 ncbi Clostridium acetobutylicum ATCC 8245
BWEI315730 ncbi Bacillus weihenstephanensis KBAB45
BVIE269482 ncbi Burkholderia vietnamiensis G46
BTHU412694 ncbi Bacillus thuringiensis Al Hakam5
BTHU281309 ncbi Bacillus thuringiensis serovar konkukian str. 97-275
BTHA271848 ncbi Burkholderia thailandensis E2645
BSUB ncbi Bacillus subtilis subtilis 1686
BSP376 Bradyrhizobium sp.5
BSP36773 Burkholderia sp.6
BSP107806 ncbi Buchnera aphidicola APS (Acyrthosiphon pisum)5
BPUM315750 ncbi Bacillus pumilus SAFR-0325
BPSE320373 ncbi Burkholderia pseudomallei 6685
BPSE320372 ncbi Burkholderia pseudomallei 1710b5
BPSE272560 ncbi Burkholderia pseudomallei K962435
BPET94624 Bordetella petrii6
BPER257313 ncbi Bordetella pertussis Tohama I6
BPAR257311 ncbi Bordetella parapertussis 128226
BMAL320389 ncbi Burkholderia mallei NCTC 102475
BMAL320388 ncbi Burkholderia mallei SAVP15
BMAL243160 ncbi Burkholderia mallei ATCC 233445
BLIC279010 ncbi Bacillus licheniformis ATCC 145806
BJAP224911 ncbi Bradyrhizobium japonicum USDA 1105
BHAL272558 ncbi Bacillus halodurans C-1256
BCLA66692 ncbi Bacillus clausii KSM-K166
BCIC186490 Candidatus Baumannia cicadellinicola5
BCER572264 ncbi Bacillus cereus 03BB1025
BCER405917 Bacillus cereus W5
BCER315749 ncbi Bacillus cytotoxicus NVH 391-985
BCER288681 ncbi Bacillus cereus E33L5
BCER226900 ncbi Bacillus cereus ATCC 145795
BCEN331272 ncbi Burkholderia cenocepacia HI24246
BCEN331271 ncbi Burkholderia cenocepacia AU 10546
BBRO257310 ncbi Bordetella bronchiseptica RB506
BBAC264462 ncbi Bdellovibrio bacteriovorus HD1005
BAPH198804 ncbi Buchnera aphidicola Sg (Schizaphis graminum)5
BANT592021 ncbi Bacillus anthracis A02485
BANT568206 ncbi Bacillus anthracis CDC 6845
BANT261594 ncbi Bacillus anthracis Ames Ancestor5
BANT260799 ncbi Bacillus anthracis Sterne5
BAMY326423 ncbi Bacillus amyloliquefaciens FZB426
BAMB398577 ncbi Burkholderia ambifaria MC40-66
BAMB339670 ncbi Burkholderia ambifaria AMMD6
ASP76114 ncbi Aromatoleum aromaticum EbN16
ASP62977 ncbi Acinetobacter sp. ADP16
ASP62928 ncbi Azoarcus sp. BH726
ASP232721 ncbi Acidovorax sp. JS426
ASAL382245 ncbi Aeromonas salmonicida salmonicida A4496
APLE434271 ncbi Actinobacillus pleuropneumoniae serovar 3 str. JL036
APLE416269 ncbi Actinobacillus pleuropneumoniae L206
AHYD196024 Aeromonas hydrophila dhakensis6
AFER243159 ncbi Acidithiobacillus ferrooxidans ATCC 232706
AEHR187272 ncbi Alkalilimnicola ehrlichii MLHE-16
ADEH290397 ncbi Anaeromyxobacter dehalogenans 2CP-C6
ABOR393595 ncbi Alcanivorax borkumensis SK26
ABAU360910 ncbi Bordetella avium 197N5
ABAC204669 ncbi Candidatus Koribacter versatilis Ellin3455
AAVE397945 ncbi Acidovorax citrulli AAC00-16
AAUR290340 ncbi Arthrobacter aurescens TC15


Names of the homologs of the genes in the group in each of these orgs
  G6234   EG11406   EG11322   EG11321   EG11320   EG10666   
YPSE349747 YPSIP31758_3114YPSIP31758_1751YPSIP31758_3116YPSIP31758_3117YPSIP31758_3118YPSIP31758_3115
YPSE273123 YPTB0937YPTB2304YPTB0935YPTB0934YPTB0933YPTB0936
YPES386656 YPDSF_2815YPDSF_0756YPDSF_2817YPDSF_2818YPDSF_2819YPDSF_2816
YPES377628 YPN_0908YPN_1845YPN_0906YPN_0905YPN_0904YPN_0907
YPES360102 YPA_2674YPA_1736YPA_2676YPA_2677YPA_2678YPA_2675
YPES349746 YPANGOLA_A3166YPANGOLA_A2577YPANGOLA_A3164YPANGOLA_A3163YPANGOLA_A3162YPANGOLA_A3165
YPES214092 YPO3180YPO2391YPO3182YPO3183YPO3184YPO3181
YPES187410 Y1003Y1946Y1001Y1000Y0999Y1002
YENT393305 YE3158YE2162YE3160YE3161YE3162YE3159
XORY360094 XOOORF_1050XOOORF_1046XOOORF_1048XOOORF_1043XOOORF_1041XOOORF_1049
XORY342109 XOO3629XOO3633XOO3631XOO3635XOO3637XOO3630
XORY291331 XOO3850XOO3854XOO3852XOO3856XOO3858XOO3851
XFAS405440 XFASM12_1903XFASM12_1907XFASM12_1905XFASM12_1908XFASM12_1910XFASM12_1904
XFAS183190 PD_1742PD_1746PD_1744PD_1747PD_1748PD_1743
XFAS160492 XF0956XF0952XF0954XF0950XF0948XF0955
XCAM487884 XCC-B100_3656XCC-B100_3660XCC-B100_3658XCC-B100_3664XCC-B100_3666XCC-B100_3657
XCAM316273 XCAORF_0863XCAORF_0859XCAORF_0861XCAORF_0857XCAORF_0855XCAORF_0862
XCAM314565 XC_3535XC_3539XC_3537XC_3541XC_3543XC_3536
XCAM190485 XCC0699XCC0695XCC0697XCC0693XCC0691XCC0698
XAXO190486 XAC0752XAC0748XAC0750XAC0746XAC0744XAC0751
XAUT78245 XAUT_4282XAUT_4279XAUT_4278XAUT_4277XAUT_4281
VVUL216895 VV1_0317VV1_2560VV1_0319VV1_0323VV1_0324VV1_0318
VVUL196600 VV0866VV1729VV0864VV0861VV0860VV0865
VPAR223926 VP0684VP1480VP0682VP0679VP0678VP0683
VFIS312309 VF0705VF1414VF0703VF0700VF0699VF0704
VEIS391735 VEIS_0583VEIS_4434VEIS_4792VEIS_2821VEIS_4247VEIS_4793
VCHO345073 VC0395_A1856VC0395_A1860VC0395_A1858VC0395_A1861VC0395_A1862VC0395_A1857
VCHO VC2266VC2270VC2268VC2271VC2272VC2267
TTUR377629 TERTU_3699TERTU_3703TERTU_3701TERTU_3704TERTU_3705TERTU_3700
TTHE300852 TTHA0424TTHA1063TTHA0336TTHA1064TTHA0134
TTHE262724 TT_C0056TT_C0698TT_C1647TT_C0699TT_C1860
TSP1755 TETH514_0021TETH514_0023TETH514_0020TETH514_1998TETH514_1534
TROS309801 TRD_0172TRD_0503TRD_0505TRD_0502TRD_0069TRD_1619
TPSE340099 TETH39_0022TETH39_0024TETH39_0021TETH39_0824TETH39_1097
TDEN292415 TBD_2193TBD_2191TBD_2168TBD_2166TBD_2192
TCRU317025 TCR_1395TCR_1399TCR_1397TCR_1400TCR_1401TCR_1396
SWOL335541 SWOL_1221SWOL_1219SWOL_1222SWOL_0949SWOL_0564
STYP99287 STM0419STM1426STM0417STM0416STM0415STM0418
SSP94122 SHEWANA3_1101SHEWANA3_2040SHEWANA3_1099SHEWANA3_1096SHEWANA3_1095SHEWANA3_1100
SSON300269 SSO_0394SSO_1494SSO_0392SSO_0391SSO_0390SSO_0393
SSED425104 SSED_1278SSED_2118SSED_1276SSED_1273SSED_1272SSED_1277
SPRO399741 SPRO_1075SPRO_2190SPRO_1073SPRO_1072SPRO_1071SPRO_1074
SPNE488221 SP70585_0240SP70585_0238SP70585_0241SP70585_1752SP70585_0502
SPNE487214 SPH_0280SPH_0278SPH_0281SPH_1821SPH_0539
SPNE487213 SPT_0214SPT_0212SPT_0215SPT_1651SPT_0468
SPNE171101 SPR0163SPR0161SPR0164SPR1557SPR0390
SPNE170187 SPN08034SPN08032SPN08035SPN02008SPN06049
SPNE1313 SPJ_0194SPJ_0192SPJ_0195SPJ_1608SPJ_0417
SPEA398579 SPEA_1167SPEA_2267SPEA_1165SPEA_1162SPEA_1161SPEA_1166
SONE211586 SO_3464SO_2296SO_3466SO_3469SO_3470SO_3465
SLOI323850 SHEW_1192SHEW_2036SHEW_1190SHEW_1187SHEW_1186SHEW_1191
SHIGELLA THILRIBERIBHRIBDYBADNUSB
SHAL458817 SHAL_1210SHAL_2017SHAL_1208SHAL_1205SHAL_1204SHAL_1209
SGLO343509 SG0654SG1439SG0652SG0651SG0650SG0653
SFUM335543 SFUM_1693SFUM_1379SFUM_1381SFUM_1378SFUM_1382
SFLE373384 SFV_0382SFV_1684SFV_0380SFV_0379SFV_0378SFV_0381
SFLE198214 AAN42012.1AAN43269.1AAN42010.1AAN42009.1AAN42008.1AAN42011.1
SERY405948 SACE_6127SACE_2122SACE_2124SACE_2887SACE_1763SACE_2076
SENT454169 SEHA_C0521SEHA_C1559SEHA_C0519SEHA_C0518SEHA_C0517SEHA_C0520
SENT321314 SCH_0460SCH_1445SCH_0458SCH_0457SCH_0456SCH_0459
SENT295319 SPA2304SPA1427SPA2306SPA2307SPA2308SPA2305
SENT220341 STY0458STY1696STY0456STY0455STY0457
SENT209261 T2444T1294T2446T2447T2448T2445
SELO269084 SYC1543_CSYC0082_CSYC1854_DSYC1308_DSYC0835_D
SDYS300267 SDY_0317SDY_1888SDY_0319SDY_0320SDY_0321SDY_0318
SDEN318161 SDEN_1149SDEN_1703SDEN_1147SDEN_1144SDEN_1143SDEN_1148
SDEG203122 SDE_3453SDE_3457SDE_3455SDE_3458SDE_3459SDE_3454
SCO SCO5562SCO1443SCO1440SCO2688SCO5804
SBOY300268 SBO_0311SBO_1469SBO_0309SBO_0308SBO_0307SBO_0310
SBAL402882 SHEW185_3153SHEW185_2225SHEW185_3155SHEW185_3159SHEW185_3160SHEW185_3154
SBAL399599 SBAL195_3298SBAL195_2333SBAL195_3300SBAL195_3303SBAL195_3304SBAL195_3299
SACI56780 SYN_02370SYN_02372SYN_00578SYN_02369SYN_02373
RXYL266117 RXYL_2786RXYL_1365RXYL_1367RXYL_1364RXYL_2875
RSP101510 RHA1_RO06510RHA1_RO07169RHA1_RO07171RHA1_RO07168RHA1_RO06790RHA1_RO07146
RSOL267608 RSC2768RSC0712RSC0715RSC0728RSC0711
RPAL316056 RPC_2665RPC_2662RPC_2661RPC_2660RPC_2664
RMET266264 RMET_3047RMET_2694RMET_2688RMET_2681RMET_2695
RFER338969 RFER_0529RFER_2669RFER_2666RFER_2659RFER_2670
REUT381666 H16_A3154H16_A2855H16_A2848H16_A2835H16_A2856
REUT264198 REUT_A2848REUT_A0769REUT_A0776REUT_A0789REUT_A0768
PTHE370438 PTH_1760PTH_1758PTH_1761PTH_1843PTH_1179
PSYR223283 PSPTO_0695PSPTO_0691PSPTO_0693PSPTO_0690PSPTO_0689PSPTO_0694
PSYR205918 PSYR_4457PSYR_4461PSYR_4459PSYR_4462PSYR_4463PSYR_4458
PSTU379731 PST_0840PST_0836PST_0838PST_0835PST_0834PST_0839
PSP56811 PSYCPRWF_2283PSYCPRWF_2384PSYCPRWF_2285PSYCPRWF_2385PSYCPRWF_2386PSYCPRWF_2284
PSP312153 PNUC_0223PNUC_0271PNUC_0265PNUC_0270PNUC_0280PNUC_0264
PSP296591 BPRO_4471BPRO_2886BPRO_2883BPRO_2875BPRO_2887
PSP117 RB6809RB12379RB6126RB8049RB4611
PPUT76869 PPUTGB1_0565PPUTGB1_2867PPUTGB1_0563PPUTGB1_0560PPUTGB1_0559PPUTGB1_0564
PPUT351746 PPUT_0554PPUT_2775PPUT_0552PPUT_0549PPUT_0548PPUT_0553
PPUT160488 PP_0519PP_2916PP_0517PP_0514PP_0513PP_0518
PPRO298386 PBPRA0802PBPRA2176PBPRA0800PBPRA0797PBPRA0796PBPRA0801
PNAP365044 PNAP_3665PNAP_2916PNAP_2915PNAP_2908PNAP_2919
PMUL272843 PM0729PM0650PM0731PM0749PM0750PM0730
PMEN399739 PMEN_3852PMEN_3856PMEN_3854PMEN_3857PMEN_3858PMEN_3853
PLUT319225 PLUT_1928PLUT_0731PLUT_1989PLUT_0727PLUT_1679
PLUM243265 PLU3896PLU2610PLU3898PLU3899PLU3900PLU3897
PING357804 PING_2241PING_3144PING_1443PING_1440PING_1439PING_1444
PHAL326442 PSHAA2369PSHAA1734PSHAA2371PSHAA2374PSHAA2375PSHAA2370
PFLU220664 PFL_5517PFL_5521PFL_5519PFL_5522PFL_5523PFL_5518
PFLU216595 PFLU5468PFLU5472PFLU5470PFLU5473PFLU5474PFLU5469
PFLU205922 PFL_5014PFL_5018PFL_5016PFL_5019PFL_5020PFL_5015
PENT384676 PSEEN0593PSEEN0589PSEEN0591PSEEN0588PSEEN0587PSEEN0592
PCRY335284 PCRYO_2394PCRYO_2469PCRYO_2392PCRYO_2470PCRYO_2471PCRYO_2393
PCAR338963 PCAR_0028PCAR_1446PCAR_1448PCAR_1445PCAR_1444PCAR_1449
PATL342610 PATL_1316PATL_1312PATL_1314PATL_1311PATL_1310PATL_1315
PARC259536 PSYC_2071PSYC_2140PSYC_2069PSYC_2141PSYC_2142PSYC_2070
PAER208964 PA4051PA4055PA4053PA4056PA4057PA4052
PAER208963 PA14_11460PA14_11410PA14_11430PA14_11400PA14_11380PA14_11450
PACN267747 PPA1357PPA1751PPA1749PPA1752PPA1025
OIHE221109 OB0644OB3215OB3213OB0423OB2158OB1881
OCAR504832 OCAR_5866OCAR_5863OCAR_5862OCAR_5861OCAR_5865
NWIN323098 NWI_1721NWI_1724NWI_1725NWI_1726NWI_1722
NSP35761 NOCA_3288NOCA_2448NOCA_2450NOCA_2447NOCA_3812
NOCE323261 NOC_0804NOC_2024NOC_0802NOC_2025NOC_2026NOC_0803
NMUL323848 NMUL_A0013NMUL_A0009NMUL_A0011NMUL_A0006NMUL_A0005NMUL_A0012
NMEN374833 NMCC_1758NMCC_1128NMCC_0641NMCC_0411NMCC_0640
NMEN272831 NMC1782NMC1148NMC0635NMC0403NMC0634
NMEN122587 NMA2103NMA1416NMA0886NMA0644NMA0885
NMEN122586 NMB_0385NMB_1247NMB_0684NMB_1817NMB_0683
NGON242231 NGO1575NGO0755NGO0257NGO0089NGO0256
NFAR247156 NFA42010NFA36010NFA35990NFA37980NFA36310
NEUT335283 NEUT_2519NEUT_2515NEUT_1091NEUT_1551NEUT_2518
NEUR228410 NE2559NE2555NE2557NE0793NE1432NE2558
MXAN246197 MXAN_6697MXAN_4763MXAN_4762MXAN_4764MXAN_4765MXAN_4761
MVAN350058 MVAN_2151MVAN_2693MVAN_2695MVAN_2690MVAN_2443MVAN_2652
MTUB419947 MRA_3006MRA_1421MRA_1425MRA_2746MRA_2561
MTUB336982 TBFG_12992TBFG_11441TBFG_11445TBFG_12732TBFG_12553
MTHE264732 MOTH_1157MOTH_0916MOTH_0918MOTH_0915MOTH_1521
MTBRV RV2977CRV1412RV1416RV2718CRV2533C
MTBCDC MT3055MT1456MT1459MT2791MT2608
MSUC221988 MS0974MS1313MS0976MS1374MS1375MS0975
MSP400668 MMWYL1_4047MMWYL1_1243MMWYL1_4050MMWYL1_4051MMWYL1_4049
MSP189918 MKMS_1978MKMS_2436MKMS_2433MKMS_2216MKMS_2406
MSP164757 MJLS_1912MJLS_2430MJLS_2427MJLS_2159MJLS_2400
MSP164756 MMCS_1932MMCS_2389MMCS_2386MMCS_2170MMCS_2359
MSME246196 MSMEG_2398MSMEG_3071MSMEG_3067MSMEG_2743MSMEG_3036
MPET420662 MPE_A1597MPE_A2946MPE_A2945MPE_A2939MPE_A2949
MGIL350054 MFLV_4216MFLV_3721MFLV_3718MFLV_3727MFLV_3954MFLV_3751
MFLA265072 MFLA_0573MFLA_2097MFLA_0492MFLA_1915MFLA_1916MFLA_0493
MCAP243233 MCA_1653MCA_1865MCA_1655MCA_1658MCA_1659MCA_1654
MBOV410289 BCG_2998CBCG_1473BCG_1477BCG_1470BCG_2731CBCG_2555C
MBOV233413 MB3001CMB1447MB1451MB1444MB2737CMB2562C
MAVI243243 MAV_3829MAV_3366MAV_3364MAV_3368MAV_3612MAV_3410
MAQU351348 MAQU_0847MAQU_1940MAQU_0845MAQU_0843MAQU_0842MAQU_0846
LXYL281090 LXX09720LXX04360LXX04370LXX15110LXX11010
LSPH444177 BSPH_2043BSPH_2045BSPH_1751BSPH_4106BSPH_3515
LPNE400673 LPC_2564LPC_0645LPC_0647LPC_2566LPC_2565
LPNE297246 LPP0794LPP1181LPP1183LPP0792LPP0793
LPNE297245 LPL0765LPL1187LPL1189LPL0763LPL0764
LPNE272624 LPG0728LPG1178LPG1180LPG0726LPG0727
LCHO395495 LCHO_3919LCHO_2113LCHO_2934LCHO_2928LCHO_2937
KRAD266940 KRAD_1366KRAD_2977KRAD_0126KRAD_1508KRAD_3008
KPNE272620 GKPORF_B4697GKPORF_B1099GKPORF_B4695GKPORF_B4694GKPORF_B4693GKPORF_B4696
JSP375286 MMA_0609MMA_2339MMA_2434MMA_2442MMA_2338
ILOI283942 IL2140IL1402IL2142IL1870IL1871IL2141
HSOM228400 HSM_1301HSM_1281HSM_1299HSM_1534HSM_1535HSM_1300
HSOM205914 HS_0832HS_0812HS_0830HS_1050HS_1051HS_0831
HMOD498761 HM1_0203HM1_2142HM1_2144HM1_2141HM1_2069HM1_0286
HINF71421 HI_1305HI_1613HI_1303HI_0944HI_0943HI_1304
HINF374930 CGSHIEE_05150CGSHIEE_05720CGSHIEE_05160CGSHIEE_07245CGSHIEE_07250CGSHIEE_05155
HINF281310 NTHI1618NTHI1429NTHI1616NTHI1115NTHI1114NTHI1617
HHAL349124 HHAL_0895HHAL_0899HHAL_0897HHAL_0900HHAL_0901HHAL_0896
HDUC233412 HD_0436HD_1162HD_1165HD_1161HD_1374HD_0435
HCHE349521 HCH_05952HCH_02673HCH_05954HCH_05957HCH_05958HCH_05953
HAUR316274 HAUR_1228HAUR_1304HAUR_1586HAUR_2423HAUR_1584HAUR_0751
HARS204773 HEAR0642HEAR1037HEAR2372HEAR2379HEAR1038
GURA351605 GURA_0692GURA_2182GURA_2180GURA_2183GURA_2184GURA_2179
GSUL243231 GSU_3194GSU_1689GSU_1691GSU_1688GSU_1687GSU_1692
GMET269799 GMET_3213GMET_1625GMET_1627GMET_1624GMET_1623GMET_1628
GKAU235909 GK2296GK2294GK2297GK2723GK2397
FSUC59374 FSU3106FSU3306FSU3308FSU0814FSU3309
ESP42895 ENT638_0885ENT638_1784ENT638_0883ENT638_0882ENT638_0881ENT638_0884
EFER585054 EFER_2608EFER_1382EFER_2610EFER_2611EFER_2612EFER_2609
ECOO157 THILRIBEZ0516RIBDYBADNUSB
ECOL83334 ECS0470ECS2371ECS0468ECS0467ECS0466ECS0469
ECOL585397 ECED1_0440ECED1_1861ECED1_0438ECED1_0437ECED1_0436ECED1_0439
ECOL585057 ECIAI39_0259ECIAI39_1394ECIAI39_0261ECIAI39_0262ECIAI39_0263ECIAI39_0260
ECOL585056 ECUMN_0455ECUMN_1952ECUMN_0453ECUMN_0452ECUMN_0451ECUMN_0454
ECOL585055 EC55989_0427EC55989_1830EC55989_0425EC55989_0424EC55989_0423EC55989_0426
ECOL585035 ECS88_0412ECS88_1711ECS88_0410ECS88_0409ECS88_0408ECS88_0411
ECOL585034 ECIAI1_0417ECIAI1_1714ECIAI1_0415ECIAI1_0414ECIAI1_0413ECIAI1_0416
ECOL481805 ECOLC_3216ECOLC_1967ECOLC_3218ECOLC_3219ECOLC_3220ECOLC_3217
ECOL469008 ECBD_3244ECBD_1981ECBD_3246ECBD_3247ECBD_3248ECBD_3245
ECOL439855 ECSMS35_0453ECSMS35_1535ECSMS35_0451ECSMS35_0450ECSMS35_0449ECSMS35_0452
ECOL413997 ECB_00365ECB_01633ECB_00363ECB_00362ECB_00361ECB_00364
ECOL409438 ECSE_0439ECSE_1786ECSE_0437ECSE_0436ECSE_0435ECSE_0438
ECOL405955 APECO1_1593APECO1_742APECO1_1595APECO1_1596APECO1_1597
ECOL364106 UTI89_C0440UTI89_C1853UTI89_C0437UTI89_C0436UTI89_C0435UTI89_C0439
ECOL362663 ECP_0476ECP_1609ECP_0474ECP_0473ECP_0472ECP_0475
ECOL331111 ECE24377A_0448ECE24377A_1876ECE24377A_0446ECE24377A_0445ECE24377A_0444ECE24377A_0447
ECOL316407 ECK0411:JW0407:B0417ECK1658:JW1654:B1662ECK0409:JW0405:B0415ECK0408:JW0404:B0414ECK0407:JW0403:B0413ECK0410:JW0406:B0416
ECOL199310 C0528C2056C0525C0524C0523C0527
ECAR218491 ECA1129ECA1923ECA1127ECA1126ECA1125ECA1128
DVUL882 DVU_0157DVU_1200DVU_1198DVU_1201DVU_1197
DSP255470 CBDBA347CBDBA1104CBDBA1102CBDBA1105CBDBA286CBDBA1206
DSP216389 DEHABAV1_0376DEHABAV1_1000DEHABAV1_0998DEHABAV1_1001DEHABAV1_0323DEHABAV1_1089
DRED349161 DRED_2889DRED_2092DRED_2090DRED_2093DRED_0692DRED_1069
DPSY177439 DP2270DP1099DP1101DP2785DP2786DP1102
DOLE96561 DOLE_1765DOLE_2078DOLE_2076DOLE_2079DOLE_2080DOLE_2075
DNOD246195 DNO_0473DNO_0471DNO_0474DNO_0475DNO_0470
DHAF138119 DSY1663DSY1665DSY1662DSY0321DSY2364
DETH243164 DET_0397DET_1189DET_1187DET_1190DET_0344DET_1278
DDES207559 DDE_3570DDE_2435DDE_2437DDE_2434DDE_2438
DARO159087 DARO_3740DARO_4095DARO_3738DARO_0605DARO_0604DARO_3739
CVIO243365 CV_2392CV_2387CV_2390CV_1290CV_1287CV_2391
CVES412965 COSY_0388COSY_0462COSY_0464COSY_0726COSY_0465
CTET212717 CTC_00672CTC_00674CTC_00671CTC_01129CTC_01581
CSAL290398 CSAL_2581CSAL_2099CSAL_2583CSAL_2585CSAL_2586CSAL_2582
CRUT413404 RMAG_0419RMAG_0504RMAG_0506RMAG_0800RMAG_0631RMAG_0507
CPSY167879 CPS_1533CPS_1531CPS_0730CPS_0729CPS_1532
CPER289380 CPR_0531CPR_0533CPR_0530CPR_1730CPR_1792
CPER195103 CPF_0547CPF_0549CPF_0546CPF_2012CPF_2078
CPER195102 CPE0567CPE0569CPE0566CPE1759CPE1824
CNOV386415 NT01CX_0714NT01CX_0712NT01CX_0715NT01CX_2257NT01CX_1978
CMIC443906 CMM_1349CMM_0962CMM_0960CMM_0963CMM_1847CMM_1792
CMIC31964 CMS2044CMS2877CMS2876CMS1385CMS2040
CKLU431943 CKL_2168CKL_2166CKL_2169CKL_1344CKL_1227
CJAP155077 CJA_2692CJA_2696CJA_2694CJA_2698CJA_2699CJA_2693
CHYD246194 CHY_0749CHY_1474CHY_1472CHY_1475CHY_2052CHY_1994
CGLU196627 CG1495CG1799CG1797CG1800CG2112
CEFF196164 CE1435CE1715CE1713CE1716CE1820
CDES477974 DAUD_2017DAUD_0624DAUD_0626DAUD_0623DAUD_1020
CCHL340177 CAG_1213CAG_0625CAG_0132CAG_0623CAG_0417
CBUR434922 COXBU7E912_0581COXBU7E912_0657COXBU7E912_0659COXBU7E912_0655COXBU7E912_0578COXBU7E912_0579
CBUR360115 COXBURSA331_A1576COXBURSA331_A0761COXBURSA331_A0763COXBURSA331_A0758COXBURSA331_A1579COXBURSA331_A1578
CBUR227377 CBU_1415CBU_0646CBU_0648CBU_0643CBU_1418CBU_1417
CBOT536232 CLM_3261CLM_3259CLM_3262CLM_2834CLM_2103
CBOT515621 CLJ_B3119CLJ_B3117CLJ_B3120CLJ_B2760CLJ_B2073
CBOT508765 CLL_A1296CLL_A1298CLL_A1295CLL_A1193CLL_A2406
CBOT498213 CLD_1677CLD_1679CLD_1676CLD_2106CLD_2751
CBOT441772 CLI_2921CLI_2919CLI_2922CLI_2592CLI_1950
CBOT441771 CLC_2764CLC_2762CLC_2765CLC_2388CLC_1830
CBOT441770 CLB_2831CLB_2829CLB_2832CLB_2406CLB_1823
CBOT36826 CBO2865CBO2863CBO2866CBO2530CBO1886
CBEI290402 CBEI_1225CBEI_1227CBEI_1224CBEI_1123CBEI_1701
CACE272562 CAC0591CAC0593CAC0590CAC1698CAC2084
BWEI315730 BCERKBAB4_3942BCERKBAB4_3944BCERKBAB4_3941BCERKBAB4_4411BCERKBAB4_4034
BVIE269482 BCEP1808_0604BCEP1808_4180BCEP1808_0873BCEP1808_0877BCEP1808_0739BCEP1808_0872
BTHU412694 BALH_3726BALH_3728BALH_3725BALH_4164BALH_3790
BTHU281309 BT9727_3852BT9727_3854BT9727_3851BT9727_4311BT9727_3924
BTHA271848 BTH_I1188BTH_I1530BTH_I1542BTH_I1380BTH_I1529
BSUB BSU05900BSU23270BSU23250BSU23280BSU29000BSU24320
BSP376 BRADO4424BRADO4427BRADO4428BRADO4429BRADO4425
BSP36773 BCEP18194_A3712BCEP18194_B2300BCEP18194_A4057BCEP18194_A4064BCEP18194_A3896BCEP18194_A4056
BSP107806 BU460BU112BU459BU462BU463
BPUM315750 BPUM_0521BPUM_2061BPUM_2059BPUM_0703BPUM_2164
BPSE320373 BURPS668_3440BURPS668_3017BURPS668_3012BURPS668_3195BURPS668_3018
BPSE320372 BURPS1710B_A3752BURPS1710B_A3360BURPS1710B_A3355BURPS1710B_A3517BURPS1710B_A3361
BPSE272560 BPSL2960BPSL2627BPSL2624BPSL2757BPSL2628
BPET94624 BPET3955BPET0617BPET3957BPET0616BPET0615BPET3956
BPER257313 BP3487BP2874BP3485BP2948BP2951BP3486
BPAR257311 BPP0860BPP0955BPP0858BPP3871BPP3874BPP0859
BMAL320389 BMA10247_3308BMA10247_2017BMA10247_2013BMA10247_1941BMA10247_2018
BMAL320388 BMASAVP1_A0397BMASAVP1_A0763BMASAVP1_A0767BMASAVP1_A0835BMASAVP1_A0762
BMAL243160 BMA_2478BMA_2146BMA_2143BMA_2074BMA_2147
BLIC279010 BL00841BL01890BL01888BL01891BL00388BL01528
BJAP224911 BLL5027BLL5030BLL5031BLL5032BLL5028
BHAL272558 BH0544BH1555BH1557BH1554BH3146BH2785
BCLA66692 ABC0867ABC1811ABC1813ABC3987ABC2702ABC2466
BCIC186490 BCI_0604BCI_0087BCI_0602BCI_0601BCI_0603
BCER572264 BCA_4223BCA_4225BCA_4222BCA_4690BCA_4291
BCER405917 BCE_4180BCE_4182BCE_4179BCE_4711BCE_4255
BCER315749 BCER98_2809BCER98_2811BCER98_2808BCER98_3266BCER98_2875
BCER288681 BCE33L3866BCE33L3868BCE33L3865BCE33L4322BCE33L3935
BCER226900 BC_4110BC_4112BC_4109BC_4581BC_4181
BCEN331272 BCEN2424_0630BCEN2424_3795BCEN2424_0956BCEN2424_0960BCEN2424_0807BCEN2424_0955
BCEN331271 BCEN_0147BCEN_4568BCEN_0477BCEN_0481BCEN_0324BCEN_0476
BBRO257310 BB0954BB1167BB0952BB4344BB4347BB0953
BBAC264462 BD1008BD3039BD3037BD1098BD1097
BAPH198804 BUSG444BUSG104BUSG443BUSG446BUSG447
BANT592021 BAA_4354BAA_4357BAA_4353BAA_4835BAA_4423
BANT568206 BAMEG_4372BAMEG_4375BAMEG_4371BAMEG_4855BAMEG_4441
BANT261594 GBAA4332GBAA4334GBAA4331GBAA4824GBAA4406
BANT260799 BAS4019BAS4021BAS4018BAS4476BAS4086
BAMY326423 RBAM_006350RBAM_021410RBAM_021390RBAM_021420RBAM_026040RBAM_022650
BAMB398577 BAMMC406_0555BAMMC406_3686BAMMC406_0826BAMMC406_0830BAMMC406_0701BAMMC406_0825
BAMB339670 BAMB_0531BAMB_5522BAMB_0817BAMB_0821BAMB_0684BAMB_0816
ASP76114 EBA3404EBA3569EBA3566EBA1045EBA1044EBA3564
ASP62977 ACIAD3573ACIAD0249ACIAD3571ACIAD0247ACIAD0246ACIAD3572
ASP62928 AZO0510AZO0320AZO0318AZO2803AZO2802AZO0317
ASP232721 AJS_0356AJS_4077AJS_2767AJS_3190AJS_1659AJS_2768
ASAL382245 ASA_0984ASA_2183ASA_0982ASA_0979ASA_0978ASA_0983
APLE434271 APJL_0203APJL_0403APJL_0405APJL_0402APJL_0711APJL_0202
APLE416269 APL_0202APL_0383APL_0385APL_0382APL_0711APL_0201
AHYD196024 AHA_3327AHA_2116AHA_3329AHA_3333AHA_3334AHA_3328
AFER243159 AFE_2118AFE_2730AFE_2728AFE_2731AFE_2732AFE_2727
AEHR187272 MLG_0380MLG_0376MLG_0378MLG_0375MLG_0374MLG_0379
ADEH290397 ADEH_4320ADEH_2741ADEH_2739ADEH_2742ADEH_2743ADEH_2738
ABOR393595 ABO_2169ABO_2173ABO_2171ABO_2174ABO_2175ABO_2170
ABAU360910 BAV0572BAV0570BAV2957BAV2960BAV0571
ABAC204669 ACID345_4694ACID345_1214ACID345_3337ACID345_4041ACID345_1215
AAVE397945 AAVE_0432AAVE_4731AAVE_2231AAVE_3555AAVE_2993AAVE_2230
AAUR290340 AAUR_2479AAUR_1827AAUR_1829AAUR_1826AAUR_1725


Organism features enriched in list (features available for 278 out of the 294 orgs in the list)
Feature    Pvalue       Num occurrences in list  Total num occurrences  
Arrangment:Clusters 0.0002165117
Arrangment:Pairs 0.000757868112
Endospores:No 7.494e-968211
Endospores:Yes 2.560e-84453
GC_Content_Range4:0-40 1.260e-1950213
GC_Content_Range4:40-60 1.163e-7137224
GC_Content_Range4:60-100 0.000025590145
GC_Content_Range7:0-30 0.00947421547
GC_Content_Range7:30-40 7.951e-1735166
GC_Content_Range7:50-60 1.274e-877107
GC_Content_Range7:60-70 0.000136082134
Genome_Size_Range5:0-2 6.561e-3413155
Genome_Size_Range5:4-6 6.673e-23142184
Genome_Size_Range5:6-10 0.00065743347
Genome_Size_Range9:0-1 0.0000403327
Genome_Size_Range9:1-2 1.018e-2710128
Genome_Size_Range9:2-3 0.009109547120
Genome_Size_Range9:4-5 2.969e-87096
Genome_Size_Range9:5-6 8.841e-137288
Genome_Size_Range9:6-8 0.00155202738
Gram_Stain:Gram_Neg 8.887e-7187333
Habitat:Host-associated 0.000261679206
Habitat:Multiple 0.0000258107178
Habitat:Specialized 0.00311961653
Habitat:Terrestrial 0.00040732431
Motility:No 0.000415155151
Motility:Yes 5.771e-8159267
Optimal_temp.:35-37 0.00005671313
Pathogenic_in:No 0.004372294226
Pathogenic_in:Plant 0.00170241315
Shape:Coccus 1.026e-81682
Shape:Irregular_coccus 0.0016540217
Shape:Rod 3.356e-20219347
Shape:Sphere 0.0005450219
Shape:Spiral 6.695e-7334
Temp._range:Hyperthermophilic 5.058e-6123
Temp._range:Mesophilic 0.0001814242473
Temp._range:Psychrophilic 0.001189999
Temp._range:Thermophilic 0.00902411035



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ORGANISMS CONTAINING AT MOST 1 GENES FROM THE GROUP:

Total number of orgs: 101
Effective number of orgs (counting one per cluster within 468 clusters): 90

Organism list
Homologs in each organism in the list
Features enriched in organism list


Follow (ncbi) link, when present, to find the set of organism features for each organism
Org ID  Org Name  # genes in group found in org  
WPIP955 Wolbachia pipientis1
UURE95667 Ureaplasma urealyticum serovar 130
UURE95664 Ureaplasma urealyticum serovar 100
UPAR505682 ncbi Ureaplasma parvum serovar 3 str. ATCC 278150
UMET351160 ncbi uncultured methanogenic archaeon RC-I1
TWHI218496 ncbi Tropheryma whipplei TW08/271
TWHI203267 ncbi Tropheryma whipplei Twist1
TVOL273116 ncbi Thermoplasma volcanium GSS11
TTEN273068 ncbi Thermoanaerobacter tengcongensis MB41
TPEN368408 ncbi Thermofilum pendens Hrk 51
TPAL243276 ncbi Treponema pallidum pallidum Nichols1
TACI273075 ncbi Thermoplasma acidophilum DSM 17281
STOK273063 ncbi Sulfolobus tokodaii 70
STHE322159 ncbi Streptococcus thermophilus LMD-91
STHE299768 ncbi Streptococcus thermophilus CNRZ10661
STHE264199 ncbi Streptococcus thermophilus LMG 183111
SSUI391295 ncbi Streptococcus suis 05ZYH331
SSOL273057 ncbi Sulfolobus solfataricus P20
SPYO193567 ncbi Streptococcus pyogenes SSI-10
SMAR399550 ncbi Staphylothermus marinus F11
SACI330779 ncbi Sulfolobus acidocaldarius DSM 6390
RTYP257363 ncbi Rickettsia typhi Wilmington0
RRIC452659 ncbi Rickettsia rickettsii Iowa0
RRIC392021 ncbi Rickettsia rickettsii Sheila Smith0
RPRO272947 ncbi Rickettsia prowazekii Madrid E0
RMAS416276 ncbi Rickettsia massiliae MTU50
RFEL315456 ncbi Rickettsia felis URRWXCal20
RCON272944 ncbi Rickettsia conorii Malish 70
RCAN293613 ncbi Rickettsia canadensis McKiel0
RBEL391896 ncbi Rickettsia bellii OSU 85-3890
RBEL336407 ncbi Rickettsia bellii RML369-C0
RALB246199 Ruminococcus albus 80
RAKA293614 ncbi Rickettsia akari Hartford0
PTOR263820 ncbi Picrophilus torridus DSM 97901
PISL384616 ncbi Pyrobaculum islandicum DSM 41841
PHOR70601 ncbi Pyrococcus horikoshii OT31
PAST100379 Onion yellows phytoplasma0
PARS340102 ncbi Pyrobaculum arsenaticum DSM 135141
PAER178306 ncbi Pyrobaculum aerophilum IM21
PABY272844 ncbi Pyrococcus abyssi GE51
OTSU357244 ncbi Orientia tsutsugamushi Boryong0
MTHE349307 ncbi Methanosaeta thermophila PT1
MTHE187420 ncbi Methanothermobacter thermautotrophicus Delta H1
MSYN262723 ncbi Mycoplasma synoviae 530
MSTA339860 ncbi Methanosphaera stadtmanae DSM 30911
MSED399549 ncbi Metallosphaera sedula DSM 53481
MPUL272635 ncbi Mycoplasma pulmonis UAB CTIP0
MPNE272634 ncbi Mycoplasma pneumoniae M1290
MPEN272633 ncbi Mycoplasma penetrans HF-20
MMYC272632 ncbi Mycoplasma mycoides mycoides SC str. PG10
MMOB267748 ncbi Mycoplasma mobile 163K0
MMAZ192952 ncbi Methanosarcina mazei Go11
MMAR444158 ncbi Methanococcus maripaludis C61
MMAR426368 ncbi Methanococcus maripaludis C71
MMAR402880 ncbi Methanococcus maripaludis C51
MMAR368407 ncbi Methanoculleus marisnigri JR11
MMAR267377 ncbi Methanococcus maripaludis S21
MKAN190192 ncbi Methanopyrus kandleri AV191
MJAN243232 ncbi Methanocaldococcus jannaschii DSM 26611
MHYO295358 ncbi Mycoplasma hyopneumoniae 2320
MHYO262722 ncbi Mycoplasma hyopneumoniae 74480
MHYO262719 ncbi Mycoplasma hyopneumoniae J0
MHUN323259 ncbi Methanospirillum hungatei JF-11
MGEN243273 ncbi Mycoplasma genitalium G370
MFLO265311 ncbi Mesoplasma florum L10
MCAP340047 ncbi Mycoplasma capricolum capricolum ATCC 273430
MBUR259564 ncbi Methanococcoides burtonii DSM 62421
MBAR269797 ncbi Methanosarcina barkeri Fusaro1
MART243272 ncbi Mycoplasma arthritidis 158L3-10
MAEO419665 ncbi Methanococcus aeolicus Nankai-31
MACE188937 ncbi Methanosarcina acetivorans C2A1
LHEL405566 ncbi Lactobacillus helveticus DPC 45711
LGAS324831 ncbi Lactobacillus gasseri ATCC 333231
LDEL390333 ncbi Lactobacillus delbrueckii bulgaricus ATCC 118421
LDEL321956 ncbi Lactobacillus delbrueckii bulgaricus ATCC BAA-3651
LACI272621 ncbi Lactobacillus acidophilus NCFM1
IHOS453591 ncbi Ignicoccus hospitalis KIN4/I1
HSP64091 ncbi Halobacterium sp. NRC-11
HSAL478009 ncbi Halobacterium salinarum R11
HMUK485914 ncbi Halomicrobium mukohataei DSM 122861
HBUT415426 ncbi Hyperthermus butylicus DSM 54561
FMAG334413 ncbi Finegoldia magna ATCC 293281
CSUL444179 ncbi Candidatus Sulcia muelleri GWSS0
CPHY357809 ncbi Clostridium phytofermentans ISDg1
CPEL335992 ncbi Candidatus Pelagibacter ubique HTCC10621
CMET456442 ncbi Candidatus Methanoregula boonei 6A81
CMAQ397948 ncbi Caldivirga maquilingensis IC-1670
CKOR374847 ncbi Candidatus Korarchaeum cryptofilum OPF81
BXEN266265 ncbi Burkholderia xenovorans LB4000
BTUR314724 ncbi Borrelia turicatae 91E1351
BLON206672 ncbi Bifidobacterium longum NCC27051
BHER314723 ncbi Borrelia hermsii DAH1
BGAR290434 ncbi Borrelia garinii PBi0
BBUR224326 ncbi Borrelia burgdorferi B311
BAPH372461 ncbi Buchnera aphidicola Cc (Cinara cedri)1
BAFZ390236 ncbi Borrelia afzelii PKo0
AYEL322098 ncbi Aster yellows witches-broom phytoplasma AYWB0
AURANTIMONAS Aurantimonas manganoxydans SI85-9A10
APER272557 ncbi Aeropyrum pernix K10
ALAI441768 ncbi Acholeplasma laidlawii PG-8A1
AFUL224325 ncbi Archaeoglobus fulgidus DSM 43041


Names of the homologs of the genes in the group in each of these orgs
  G6234   EG11406   EG11322   EG11321   EG11320   EG10666   
WPIP955 WD_0710
UURE95667
UURE95664
UPAR505682
UMET351160 RRC167
TWHI218496 TW0507
TWHI203267 TW237
TVOL273116 TVN1002
TTEN273068 TTE1634
TPEN368408 TPEN_0476
TPAL243276 TP_1015
TACI273075 TA0526
STOK273063
STHE322159 STER_0356
STHE299768 STR0319
STHE264199 STU0319
SSUI391295 SSU05_1730
SSOL273057
SPYO193567
SMAR399550 SMAR_1576
SACI330779
RTYP257363
RRIC452659
RRIC392021
RPRO272947
RMAS416276
RFEL315456
RCON272944
RCAN293613
RBEL391896
RBEL336407
RALB246199
RAKA293614
PTOR263820 PTO0838
PISL384616 PISL_1186
PHOR70601 PH1833
PAST100379
PARS340102 PARS_0146
PAER178306 PAE0949
PABY272844 PAB2358
OTSU357244
MTHE349307 MTHE_1093
MTHE187420 MTH1396
MSYN262723
MSTA339860 MSP_1564
MSED399549 MSED_0019
MPUL272635
MPNE272634
MPEN272633
MMYC272632
MMOB267748
MMAZ192952 MM1365
MMAR444158 MMARC6_1543
MMAR426368 MMARC7_0376
MMAR402880 MMARC5_0460
MMAR368407 MEMAR_0480
MMAR267377 MMP1124
MKAN190192 MK0607
MJAN243232 MJ_0028
MHYO295358
MHYO262722
MHYO262719
MHUN323259 MHUN_2605
MGEN243273
MFLO265311
MCAP340047
MBUR259564 MBUR_2128
MBAR269797 MBAR_A1035
MART243272
MAEO419665 MAEO_1455
MACE188937 MA0069
LHEL405566 LHV_1614
LGAS324831 LGAS_1418
LDEL390333 LDB1509
LDEL321956 LBUL_1404
LACI272621 LBA1546
IHOS453591 IGNI_0490
HSP64091 VNG2011G
HSAL478009 OE3818F
HMUK485914 HMUK_1297
HBUT415426 HBUT_0793
FMAG334413 FMG_0620
CSUL444179
CPHY357809 CPHY_2725
CPEL335992 SAR11_1041
CMET456442 MBOO_2319
CMAQ397948
CKOR374847 KCR_0043
BXEN266265
BTUR314724 BT0107
BLON206672 BL1312
BHER314723 BH0107
BGAR290434
BBUR224326 BB_0107
BAPH372461 BCC_285
BAFZ390236
AYEL322098
AURANTIMONAS
APER272557
ALAI441768 ACL_1106
AFUL224325 AF_0733


Organism features enriched in list (features available for 95 out of the 101 orgs in the list)
Feature    Pvalue       Num occurrences in list  Total num occurrences  
Arrangment:Aggregates 0.006711159
Disease:Rocky_Mountain_Spotted_Fever 0.004212833
Endospores:No 2.098e-1062211
Endospores:Yes 0.0005679153
GC_Content_Range4:0-40 5.373e-960213
GC_Content_Range4:60-100 1.841e-67145
GC_Content_Range7:0-30 5.470e-92447
GC_Content_Range7:30-40 0.008812236166
GC_Content_Range7:60-70 0.00001197134
Genome_Size_Range5:0-2 2.166e-2569155
Genome_Size_Range5:2-4 0.002681821197
Genome_Size_Range5:4-6 1.518e-124184
Genome_Size_Range5:6-10 0.0016112147
Genome_Size_Range9:0-1 1.445e-101927
Genome_Size_Range9:1-2 2.523e-1350128
Genome_Size_Range9:3-4 0.0003292377
Genome_Size_Range9:4-5 0.0000131396
Genome_Size_Range9:5-6 7.877e-7188
Gram_Stain:Gram_Neg 9.298e-733333
Gram_Stain:Gram_Pos 0.004886215150
Habitat:Multiple 0.000023513178
Habitat:Specialized 0.00004382053
Optimal_temp.:35-40 0.004212833
Optimal_temp.:42 0.004212833
Oxygen_Req:Anaerobic 3.503e-735102
Pathogenic_in:Animal 0.0003898266
Pathogenic_in:Human 0.006991825213
Pathogenic_in:No 0.006139647226
Pathogenic_in:Swine 0.002816045
Shape:Irregular_coccus 1.706e-91417
Shape:Rod 5.008e-931347
Shape:Sphere 4.925e-111619
Temp._range:Hyperthermophilic 6.802e-91623
Temp._range:Mesophilic 0.000026662473
Temp._range:Thermophilic 0.00396461235



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ORGANISMS ENRICHED FOR GROUP:

Total number of orgs: 4
Effective number of orgs (counting one per cluster within 468 clusters): 3

Organism list
Homologs in each organism in the list
Features enriched in organism list


Follow (ncbi) link, when present, to find the set of organism features for each organism
Org ID  Org Name    Pvalue       # genes in tgt genome found in org  # genes in group found in org  
DETH243164 ncbi Dehalococcoides ethenogenes 195 0.00133085746
DSP216389 ncbi Dehalococcoides sp. BAV1 0.00149205856
DSP255470 ncbi Dehalococcoides sp. CBDB1 0.00158665916
CRUT413404 ncbi Candidatus Ruthia magnifica Cm (Calyptogena magnifica) 0.00693507556


Names of the homologs of the genes in the group in each of these orgs
  G6234   EG11406   EG11322   EG11321   EG11320   EG10666   
DETH243164 DET_0397DET_1189DET_1187DET_1190DET_0344DET_1278
DSP216389 DEHABAV1_0376DEHABAV1_1000DEHABAV1_0998DEHABAV1_1001DEHABAV1_0323DEHABAV1_1089
DSP255470 CBDBA347CBDBA1104CBDBA1102CBDBA1105CBDBA286CBDBA1206
CRUT413404 RMAG_0419RMAG_0504RMAG_0506RMAG_0800RMAG_0631RMAG_0507


Organism features enriched in list (features available for 4 out of the 4 orgs in the list)
Feature    Pvalue       Num occurrences in list  Total num occurrences  
Genome_Size_Range5:0-2 0.00485504155
Genome_Size_Range9:1-2 0.00223924128
Salinity:Mesophilic 0.0026550213
Shape:Irregular_coccus 0.0045645217



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ORGANISMS DEPLETED FOR GROUP:




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PHYLOGENETIC PROFILE SIMILARITY WITH KNOWN PATHWAYS:

Pathways or complexes with absolute value of Pearson coefficient with respect to candidate larger than 0.4 are listed below
The candidate is assumed to exist in orgs listed in section List of organisms containing most genes from the group


Pathway or complex  # Orgs containing it  # of those orgs also containing candidate  Pearson Coeff  
PWY0-1241 (ADP-L-glycero-β-D-manno-heptose biosynthesis)2181730.4727
PWY-5194 (siroheme biosynthesis)3122160.4422
THISYN-PWY (thiamin biosynthesis I)5022910.4397
SULFATE-CYS-PWY (superpathway of sulfate assimilation and cysteine biosynthesis)3652390.4357
PWY-5669 (phosphatidylethanolamine biosynthesis I)4162600.4347
GLYCOCAT-PWY (glycogen degradation I)2461810.4270
PYRIDOXSYN-PWY (pyridoxal 5'-phosphate biosynthesis I)4222610.4254
GLYCOLATEMET-PWY (glycolate and glyoxylate degradation I)2701920.4191
PWY-5340 (sulfate activation for sulfonation)3852450.4190
PWY-5386 (methylglyoxal degradation I)3052090.4185
COBALSYN-PWY (adenosylcobalamin salvage from cobinamide I)1951520.4159
PWY-5148 (acyl-CoA hydrolysis)2271690.4134
PROSYN-PWY (proline biosynthesis I)4752780.4068
ARO-PWY (chorismate biosynthesis I)5102890.4032
AST-PWY (arginine degradation II (AST pathway))1201060.4025



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PAIRWISE GENOME CONTEXT SCORE MATRIX:

  EG11406   EG11322   EG11321   EG11320   EG10666   
G62340.9985680.9995860.9994190.9995260.999787
EG114060.9998180.9998760.9994650.999478
EG113220.9998740.9995530.999921
EG113210.9998950.999736
EG113200.99971
EG10666



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PAIRWISE BLAST SCORES:

  G6234   EG11406   EG11322   EG11321   EG11320   EG10666   
G62340.0f0-----
EG11406-0.0f0----
EG11322--0.0f0---
EG11321---0.0f0--
EG11320----0.0f0-
EG10666-----0.0f0



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PATHWAYS OR PROTEIN COMPLEX MATCHES IN TARGET ORG:

For each case, all genes involved in the pathway or complex are listed. For each gene we list: a tag indicating whether the gene is part of the candidate list or not, the average and the minimum scores of the gene to the candidate list, the gene name, and its product names.

- RIBOSYN2-PWY (flavin biosynthesis I (bacteria and plants)) (degree of match pw to cand: 0.500, degree of match cand to pw: 0.500, average score: 0.959)
  Genes in pathway or complex:
             0.9297 0.7380 EG11079 (ribF) RIBF-MONOMER (bifunctional riboflavin kinase / FMN adenylyltransferase)
   *in cand* 0.9995 0.9986 EG11406 (ribC) RIBOFLAVIN-SYN-MONOMER (RibC)
   *in cand* 0.9998 0.9996 EG11322 (ribE) LUMAZINESYN-MONOMER (RibE)
             0.9993 0.9983 EG10465 (ribB) DIOHBUTANONEPSYN-MONOMER (3,4-dihydroxy-2-butanone 4-phosphate synthase)
   *in cand* 0.9998 0.9994 EG11321 (ribD) RIBOFLAVINSYNDEAM-MONOMER (fused diaminohydroxyphosphoribosylaminopyrimidine deaminase / 5-amino-6-(5-phosphoribosylamino)uracil reductase)
             0.9946 0.9742 EG11331 (ribA) GTP-CYCLOHYDRO-II-MONOMER (GTP cyclohydrolase II)
  Genes in candidate but not in this pathway or complex:
   *in cand* 0.9998 0.9995 EG10666 (nusB) EG10666-MONOMER (transcription antitermination protein NusB)
   *in cand* 0.9997 0.9995 EG11320 (nrdR) EG11320-MONOMER (NrdR)
   *in cand* 0.9995 0.9986 G6234 (thiL) THI-P-KIN-MONOMER (thiamine monophosphate kinase)
   This pathway has holes



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GENOME CONTEXT INFORMATION:

Each row corresponds to a replicon in an organism, each column to a gene in the candidate. The second column indicates whether the organims was included in the list used to compute the genome context scores or not. Some organisms are not included because they are phylogenetically too similar to others already in the list.
The number in the matrix indicate the position of the homolog of the gene in the replicon. All numbers are relative to the smaller one, which is assigned a position of zero. Two columns with the same number indicate that the two genes matched the same gene in that organism.

Genome browser links for gene clusters

The links below opens a genome browser BioCyc page for each cluster of genes in the target genome. These pages shows the central gene of the cluster in the target genome and its best homolog in the reference genomes, for the genomes that contain homologs for at least 75% of the genes in the group. Only one genome per phylogenetic cluster of organisms is shown, to keep the list smaller.

EG10666 EG11320 EG11321 EG11322 G6234 (centered at EG11322)
EG11406 (centered at EG11406)


ORG:REPLICON:CIRC?\GENE  IN REF LIST  G6234   EG11406   EG11322   EG11321   EG11320   EG10666   
396/623392/623402/623399/623422/623415/623
AAEO224324:0:Tyes1404111205--
AAUR290340:2:Tyes7329596940-
AAVE397945:0:Tyes042241770306725211769
ABAC204669:0:Tyes3517-0213828511
ABAU360910:0:Tyes2-0239523981
ABOR393595:0:Tyes042561
ABUT367737:0:Tyes0-1104--1105
ACAU438753:0:Tyes5--10-
ACEL351607:0:Tyes3110-1204-
ACRY349163:8:Tyes04-56-
ADEH290397:0:Tyes159331450
AEHR187272:0:Tyes624105
AFER243159:0:Tyes0601599602603598
AFUL224325:0:Tyes0-----
AHYD196024:0:Tyes117601178118211831177
ALAI441768:0:Tyes---0--
AMAR234826:0:Tyes380--038-
AMAR329726:9:Tyes0-40032163917-
AMET293826:0:Tyes-1301806-
ANAE240017:0:Tyes978-790-
AORE350688:0:Tyes----0222
APHA212042:0:Tyes660--0--
APLE416269:0:Tyes11841861835100
APLE434271:0:Tno11931951924790
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