CANDIDATE ID: 413

CANDIDATE ID: 413

NUMBER OF GENES: 6
AVERAGE SCORE:    9.9957960e-1 (range=[0.0,1.0])
AVERAGE MINIMUM BLAST P-VAL:    1.6666667e-1

Gene List
List of organisms containing most genes from the group
    Phylogenetic tree highlighting these organisms (opens new page)
List of organisms containing very few or no genes from the group
List of organisms enriched for group
List of organisms depleted for group
Phylogenetic profile similarity with known pathways
Pairwise genome context scores
Pairwise Blast scores
Pathway or protein complex matches in target organism
Genome context matrix
    Genes and their orthologs in genome browser BioCyc pages



GENE LIST:

- G81 (uxaC) (b3092)
   Products of gene:
     - UXAC-MONOMER (D-glucuronate isomerase / D-galacturonate isomerase)
       Reactions:
        D-glucuronate  =  D-fructuronate
         In pathways
         GALACT-GLUCUROCAT-PWY (superpathway of hexuronide and hexuronate degradation)
         PWY-6516 (PWY-6516)
         GLUCUROCAT-PWY (β-D-glucuronide and D-glucuronate degradation)
        D-galacturonate  =  D-tagaturonate
         In pathways
         GALACT-GLUCUROCAT-PWY (superpathway of hexuronide and hexuronate degradation)
         PWY-6516 (PWY-6516)
         GALACTUROCAT-PWY (D-galacturonate degradation I)

- G6816 (ydfI) (b1542)
   Products of gene:
     - G6816-MONOMER (predicted mannonate dehydrogenase)

- EG20248 (uxuB) (b4323)
   Products of gene:
     - MANNONOXIDOREDUCT-MONOMER (D-mannonate oxidoreductase)
       Reactions:
        NAD+ + D-mannonate  =  D-fructuronate + NADH + H+
         In pathways
         GALACT-GLUCUROCAT-PWY (superpathway of hexuronide and hexuronate degradation)
         PWY-6516 (PWY-6516)
         GLUCUROCAT-PWY (β-D-glucuronide and D-glucuronate degradation)

- EG12036 (yeiQ) (b2172)
   Products of gene:
     - EG12036-MONOMER (predicted dehydrogenase, NAD-dependent)

- EG11065 (uxaB) (b1521)
   Products of gene:
     - ALTRO-OXIDOREDUCT-MONOMER (altronate oxidoreductase)
       Reactions:
        NAD+ + D-altronate  =  NADH + D-tagaturonate + H+
         In pathways
         GALACT-GLUCUROCAT-PWY (superpathway of hexuronide and hexuronate degradation)
         PWY-6516 (PWY-6516)
         GALACTUROCAT-PWY (D-galacturonate degradation I)

- EG10616 (mtlD) (b3600)
   Products of gene:
     - MANNPDEHYDROG-MONOMER (mannitol-1-phosphate 5-dehydrogenase)
       Reactions:
        mannitol-1-phosphate + NAD+  =  D-fructose-6-phosphate + NADH + H+
         In pathways
         HEXITOLDEGSUPER-PWY (superpathway of hexitol degradation)
         MANNIDEG-PWY (mannitol degradation I)



Back to top


ORGANISMS CONTAINING AT LEAST 5 GENES FROM THE GROUP:

Total number of orgs: 165
Effective number of orgs (counting one per cluster within 468 clusters): 112

Organism list
Homologs in each organism in the list
Features enriched in organism list


Follow (ncbi) link, when present, to find the set of organism features for each organism
Org ID  Org Name  # genes in group found in org  
ZMOB264203 ncbi Zymomonas mobilis mobilis ZM45
YPSE349747 ncbi Yersinia pseudotuberculosis IP 317586
YPSE273123 ncbi Yersinia pseudotuberculosis IP 329536
YPES386656 ncbi Yersinia pestis Pestoides F6
YPES377628 ncbi Yersinia pestis Nepal5166
YPES360102 ncbi Yersinia pestis Antiqua6
YPES349746 ncbi Yersinia pestis Angola6
YPES214092 ncbi Yersinia pestis CO926
YPES187410 ncbi Yersinia pestis KIM 106
YENT393305 ncbi Yersinia enterocolitica enterocolitica 80816
XORY360094 ncbi Xanthomonas oryzae pv. oryzae PXO99A6
XORY342109 ncbi Xanthomonas oryzae pv. oryzae MAFF 3110186
XORY291331 ncbi Xanthomonas oryzae pv. oryzae KACC103316
XCAM487884 Xanthomonas campestris pv. paulliniae6
XCAM316273 ncbi Xanthomonas campestris pv. vesicatoria str. 85-106
XCAM314565 ncbi Xanthomonas campestris pv. campestris str. 80046
XCAM190485 ncbi Xanthomonas campestris pv. campestris str. ATCC 339136
XAXO190486 ncbi Xanthomonas axonopodis pv. citri str. 3066
VVUL216895 ncbi Vibrio vulnificus CMCP66
VVUL196600 ncbi Vibrio vulnificus YJ0166
VPAR223926 ncbi Vibrio parahaemolyticus RIMD 22106336
VEIS391735 ncbi Verminephrobacter eiseniae EF01-25
TTUR377629 ncbi Teredinibacter turnerae T79016
TTEN273068 ncbi Thermoanaerobacter tengcongensis MB46
TSP28240 Thermotoga sp.6
TSP1755 Thermoanaerobacter sp.5
TPSE340099 ncbi Thermoanaerobacter pseudethanolicus ATCC 332235
TPET390874 ncbi Thermotoga petrophila RKU-16
TMAR243274 ncbi Thermotoga maritima MSB86
STYP99287 ncbi Salmonella enterica enterica serovar Typhimurium str. LT26
SSP644076 Silicibacter sp. TrichCH4B6
SSP292414 ncbi Ruegeria sp. TM10406
SSON300269 ncbi Shigella sonnei Ss0466
SPRO399741 ncbi Serratia proteamaculans 5686
SMEL266834 ncbi Sinorhizobium meliloti 10216
SMED366394 ncbi Sinorhizobium medicae WSM4196
SHIGELLA ncbi Shigella flexneri 2a str. 2457T6
SFLE373384 ncbi Shigella flexneri 5 str. 84016
SFLE198214 ncbi Shigella flexneri 2a str. 3016
SERY405948 ncbi Saccharopolyspora erythraea NRRL 23386
SENT454169 ncbi Salmonella enterica enterica serovar Heidelberg str. SL4766
SENT321314 ncbi Salmonella enterica enterica serovar Choleraesuis str. SC-B676
SENT295319 ncbi Salmonella enterica enterica serovar Paratyphi A str. ATCC 91506
SENT220341 ncbi Salmonella enterica enterica serovar Typhi str. CT186
SENT209261 ncbi Salmonella enterica enterica serovar Typhi str. Ty26
SDYS300267 ncbi Shigella dysenteriae Sd1975
SDEG203122 ncbi Saccharophagus degradans 2-406
SBOY300268 ncbi Shigella boydii Sb2276
SALA317655 ncbi Sphingopyxis alaskensis RB22566
RSPH349102 ncbi Rhodobacter sphaeroides ATCC 170256
RSPH349101 ncbi Rhodobacter sphaeroides ATCC 170296
RSPH272943 ncbi Rhodobacter sphaeroides 2.4.16
RSP101510 ncbi Rhodococcus jostii RHA15
RSAL288705 ncbi Renibacterium salmoninarum ATCC 332096
RPOM246200 ncbi Ruegeria pomeroyi DSS-35
RLEG216596 ncbi Rhizobium leguminosarum bv. viciae 38416
RETL347834 ncbi Rhizobium etli CFN 426
RDEN375451 ncbi Roseobacter denitrificans OCh 1146
RALB246199 Ruminococcus albus 86
PSYR223283 ncbi Pseudomonas syringae pv. tomato str. DC30005
PSYR205918 ncbi Pseudomonas syringae pv. syringae B728a5
PSTU379731 ncbi Pseudomonas stutzeri A15015
PSP296591 ncbi Polaromonas sp. JS6665
PSP117 Pirellula sp.5
PRUM264731 ncbi Prevotella ruminicola 236
PPRO298386 ncbi Photobacterium profundum SS96
PMEN399739 ncbi Pseudomonas mendocina ymp5
PLUM243265 ncbi Photorhabdus luminescens laumondii TTO16
PING357804 ncbi Psychromonas ingrahamii 376
PHAL326442 ncbi Pseudoalteromonas haloplanktis TAC1255
PFLU220664 ncbi Pseudomonas fluorescens Pf-55
PFLU216595 ncbi Pseudomonas fluorescens SBW255
PFLU205922 ncbi Pseudomonas fluorescens Pf0-15
PENT384676 ncbi Pseudomonas entomophila L485
PATL342610 ncbi Pseudoalteromonas atlantica T6c5
PAER208964 ncbi Pseudomonas aeruginosa PAO15
PAER208963 ncbi Pseudomonas aeruginosa UCBPP-PA145
OANT439375 ncbi Ochrobactrum anthropi ATCC 491885
MSUC221988 ncbi Mannheimia succiniciproducens MBEL55E6
MSP400668 ncbi Marinomonas sp. MWYL16
MSP266779 ncbi Chelativorans sp. BNC16
MSP189918 ncbi Mycobacterium sp. KMS5
MSP164757 ncbi Mycobacterium sp. JLS5
MSP164756 ncbi Mycobacterium sp. MCS5
MSME246196 ncbi Mycobacterium smegmatis MC2 1555
MMAR394221 ncbi Maricaulis maris MCS106
MLOT266835 ncbi Mesorhizobium loti MAFF3030996
MAVI243243 ncbi Mycobacterium avium 1045
LLAC272623 ncbi Lactococcus lactis lactis Il14035
LLAC272622 ncbi Lactococcus lactis cremoris SK116
LCHO395495 ncbi Leptothrix cholodnii SP-65
LCAS321967 ncbi Lactobacillus casei ATCC 3345
KRAD266940 ncbi Kineococcus radiotolerans SRS302166
KPNE272620 ncbi Klebsiella pneumoniae pneumoniae MGH 785786
HCHE349521 ncbi Hahella chejuensis KCTC 23965
GTHE420246 ncbi Geobacillus thermodenitrificans NG80-25
GOXY290633 ncbi Gluconobacter oxydans 621H5
GFOR411154 ncbi Gramella forsetii KT08035
FSP1855 Frankia sp. EAN1pec6
FJOH376686 ncbi Flavobacterium johnsoniae UW1016
ESP42895 Enterobacter sp.6
EFER585054 ncbi Escherichia fergusonii ATCC 354696
ECOO157 ncbi Escherichia coli O157:H7 EDL9336
ECOL83334 Escherichia coli O157:H76
ECOL585397 ncbi Escherichia coli ED1a6
ECOL585057 ncbi Escherichia coli IAI396
ECOL585056 ncbi Escherichia coli UMN0266
ECOL585055 ncbi Escherichia coli 559896
ECOL585035 ncbi Escherichia coli S886
ECOL585034 ncbi Escherichia coli IAI16
ECOL481805 ncbi Escherichia coli ATCC 87396
ECOL469008 ncbi Escherichia coli BL21(DE3)6
ECOL439855 ncbi Escherichia coli SMS-3-56
ECOL413997 ncbi Escherichia coli B str. REL6066
ECOL409438 ncbi Escherichia coli SE116
ECOL405955 ncbi Escherichia coli APEC O16
ECOL364106 ncbi Escherichia coli UTI896
ECOL362663 ncbi Escherichia coli 5366
ECOL331111 ncbi Escherichia coli E24377A6
ECOL316407 ncbi Escherichia coli K-12 substr. W31106
ECOL199310 ncbi Escherichia coli CFT0736
ECAR218491 ncbi Pectobacterium atrosepticum SCRI10436
DGEO319795 ncbi Deinococcus geothermalis DSM 113005
CSP78 Caulobacter sp.6
CSP501479 Citreicella sp. SE455
CSAL290398 ncbi Chromohalobacter salexigens DSM 30435
CPHY357809 ncbi Clostridium phytofermentans ISDg6
CJAP155077 Cellvibrio japonicus6
CGLU196627 ncbi Corynebacterium glutamicum ATCC 130326
CEFF196164 ncbi Corynebacterium efficiens YS-3146
CBEI290402 ncbi Clostridium beijerinckii NCIMB 80526
CAULO ncbi Caulobacter crescentus CB156
CACE272562 ncbi Clostridium acetobutylicum ATCC 8246
BVIE269482 ncbi Burkholderia vietnamiensis G45
BTHE226186 ncbi Bacteroides thetaiotaomicron VPI-54825
BTHA271848 ncbi Burkholderia thailandensis E2645
BSUB ncbi Bacillus subtilis subtilis 1686
BPUM315750 ncbi Bacillus pumilus SAFR-0326
BPSE320373 ncbi Burkholderia pseudomallei 6685
BPSE320372 ncbi Burkholderia pseudomallei 1710b5
BPSE272560 ncbi Burkholderia pseudomallei K962435
BPET94624 Bordetella petrii5
BOVI236 Brucella ovis5
BMEL359391 ncbi Brucella melitensis biovar Abortus 23085
BMEL224914 ncbi Brucella melitensis bv. 1 str. 16M6
BMAL320389 ncbi Burkholderia mallei NCTC 102475
BMAL320388 ncbi Burkholderia mallei SAVP15
BMAL243160 ncbi Burkholderia mallei ATCC 233445
BLIC279010 ncbi Bacillus licheniformis ATCC 145806
BJAP224911 ncbi Bradyrhizobium japonicum USDA 1105
BHAL272558 ncbi Bacillus halodurans C-1256
BCLA66692 ncbi Bacillus clausii KSM-K166
BCEN331272 ncbi Burkholderia cenocepacia HI24245
BCEN331271 ncbi Burkholderia cenocepacia AU 10545
BCAN483179 ncbi Brucella canis ATCC 233656
BAMY326423 ncbi Bacillus amyloliquefaciens FZB426
BAMB398577 ncbi Burkholderia ambifaria MC40-65
BAMB339670 ncbi Burkholderia ambifaria AMMD5
BABO262698 ncbi Brucella abortus bv. 1 str. 9-9415
ASP1667 Arthrobacter sp.6
ANAE240017 Actinomyces oris MG15
AMET293826 ncbi Alkaliphilus metalliredigens QYMF6
ACEL351607 ncbi Acidothermus cellulolyticus 11B5
ACAU438753 ncbi Azorhizobium caulinodans ORS 5716
AAUR290340 ncbi Arthrobacter aurescens TC16


Names of the homologs of the genes in the group in each of these orgs
  G81   G6816   EG20248   EG12036   EG11065   EG10616   
ZMOB264203 ZMO1449ZMO1449ZMO1449ZMO1449ZMO1449
YPSE349747 YPSIP31758_0491YPSIP31758_2702YPSIP31758_2702YPSIP31758_2702YPSIP31758_0492YPSIP31758_4127
YPSE273123 YPTB3478YPTB1314YPTB1314YPTB1314YPTB3477YPTB3919
YPES386656 YPDSF_0366YPDSF_2414YPDSF_2414YPDSF_2414YPDSF_0367YPDSF_0026
YPES377628 YPN_0448YPN_2696YPN_2696YPN_2696YPN_0449YPN_3714
YPES360102 YPA_3210YPA_0998YPA_0998YPA_0998YPA_3208YPA_3015
YPES349746 YPANGOLA_A1104YPANGOLA_A1507YPANGOLA_A1507YPANGOLA_A1507YPANGOLA_A1103YPANGOLA_A3779
YPES214092 YPO0579YPO1280YPO1280YPO1280YPO0580YPO4067
YPES187410 Y3600Y2903Y2903Y2903Y3599Y4086
YENT393305 YE3708YE1438YE1438YE1438YE3707YE4147
XORY360094 XOOORF_0360XOOORF_0363XOOORF_0363XOOORF_0363XOOORF_0363XOOORF_0363
XORY342109 XOO4170XOO4167XOO4167XOO4167XOO4167XOO4167
XORY291331 XOO4427XOO4424XOO4424XOO4424XOO4424XOO4424
XCAM487884 XCC-B100_4329XCC-B100_4312XCC-B100_4312XCC-B100_4312XCC-B100_4312XCC-B100_4312
XCAM316273 XCAORF_4439XCAORF_4428XCAORF_4428XCAORF_4428XCAORF_4428XCAORF_4428
XCAM314565 XC_4209XC_4198XC_4198XC_4198XC_4198XC_4198
XCAM190485 XCC4117XCC4107XCC4107XCC4107XCC4107XCC4107
XAXO190486 XAC4251XAC4232XAC4232XAC4232XAC4232XAC4232
VVUL216895 VV2_1070VV2_1069VV2_1069VV2_1069VV2_1069VV1_0639
VVUL196600 VVA1594VVA1593VVA1593VVA1593VVA1593VV0504
VPAR223926 VPA1706VPA1705VPA1705VPA1705VPA1705VP0369
VEIS391735 VEIS_3560VEIS_3560VEIS_3560VEIS_3560VEIS_3560
TTUR377629 TERTU_0898TERTU_0899TERTU_0899TERTU_0899TERTU_0899TERTU_0899
TTEN273068 TTE1939TTE0342TTE1940TTE1940TTE0342TTE0342
TSP28240 TRQ2_0883TRQ2_0879TRQ2_0879TRQ2_0879TRQ2_0879TRQ2_0879
TSP1755 TETH514_0271TETH514_0271TETH514_0271TETH514_0271TETH514_0271
TPSE340099 TETH39_1939TETH39_1939TETH39_1939TETH39_1939TETH39_1939
TPET390874 TPET_0860TPET_0856TPET_0856TPET_0856TPET_0856TPET_0856
TMAR243274 TM_0064TM_0068TM_0068TM_0068TM_0068TM_0068
STYP99287 STM3137STM1508STM1508STM1508STM3136STM3686
SSP644076 SCH4B_0013SCH4B_1269SCH4B_1269SCH4B_1269SCH4B_1269SCH4B_0014
SSP292414 TM1040_3865TM1040_3866TM1040_3866TM1040_3866TM1040_0426TM1040_3866
SSON300269 SSO_3245SSO_2228SSO_2228SSO_2228SSO_1607SSO_3808
SPRO399741 SPRO_4321SPRO_3239SPRO_3239SPRO_3239SPRO_3566SPRO_0073
SMEL266834 SMB21354SMB20749SMB20749SMB20749SMB20749SMB20749
SMED366394 SMED_4749SMED_4245SMED_4245SMED_4245SMED_4245SMED_4245
SHIGELLA UXACYEIQYEIQYEIQUXABMTLD
SFLE373384 SFV_3133SFV_4203SFV_4203SFV_4203SFV_1580SFV_3937
SFLE198214 AAN44604.1AAN45618.1AAN45618.1AAN45618.1AAN43160.1AAN45081.1
SERY405948 SACE_5055SACE_4940SACE_4940SACE_4940SACE_5054SACE_5054
SENT454169 SEHA_C3383SEHA_C3382SEHA_C3382SEHA_C3382SEHA_C3382SEHA_C4009
SENT321314 SCH_3078SCH_3077SCH_3077SCH_3077SCH_3077SCH_3610
SENT295319 SPA3005SPA3004SPA3004SPA3004SPA3004SPA3538
SENT220341 STY3308STY1553STY1553STY1553STY3307STY4110
SENT209261 T3058T3057T3057T3057T3057T3833
SDYS300267 SDY_0907SDY_0907SDY_0907SDY_0907SDY_0907
SDEG203122 SDE_1272SDE_0941SDE_0941SDE_0941SDE_0941SDE_0941
SBOY300268 SBO_2953SBO_4374SBO_4374SBO_4374SBO_1616SBO_3598
SALA317655 SALA_3046SALA_3047SALA_3047SALA_3047SALA_3047SALA_3047
RSPH349102 RSPH17025_2412RSPH17025_2405RSPH17025_2405RSPH17025_2405RSPH17025_2405RSPH17025_2405
RSPH349101 RSPH17029_2139RSPH17029_2132RSPH17029_2132RSPH17029_2132RSPH17029_2132RSPH17029_2132
RSPH272943 RSP_0488RSP_0480RSP_0480RSP_0480RSP_0480RSP_0480
RSP101510 RHA1_RO02810RHA1_RO02810RHA1_RO02810RHA1_RO02810RHA1_RO02810
RSAL288705 RSAL33209_3421RSAL33209_3419RSAL33209_3419RSAL33209_3419RSAL33209_3419RSAL33209_3419
RPOM246200 SPO_1724SPO_1724SPO_1724SPO_1724SPO_1724
RLEG216596 RL0099RL0098RL0098RL0098RL4214RL0098
RETL347834 RHE_CH00090RHE_CH00089RHE_CH00089RHE_CH00089RHE_CH03678RHE_CH00089
RDEN375451 RD1_2934RD1_2933RD1_2933RD1_2933RD1_2933RD1_2933
RALB246199 GRAORF_3160GRAORF_3304GRAORF_0353GRAORF_3304GRAORF_0353GRAORF_0353
PSYR223283 PSPTO_2703PSPTO_2703PSPTO_2703PSPTO_2703PSPTO_2703
PSYR205918 PSYR_2436PSYR_2436PSYR_2436PSYR_2436PSYR_2436
PSTU379731 PST_2194PST_2194PST_2194PST_2194PST_2194
PSP296591 BPRO_3970BPRO_3970BPRO_3970BPRO_3970BPRO_3970
PSP117 RB2403RB2403RB2403RB2403RB2403
PRUM264731 GFRORF1363GFRORF0735GFRORF0735GFRORF0735GFRORF1646GFRORF1646
PPRO298386 PBPRB1515PBPRB1880PBPRB1880PBPRB1880PBPRB1516PBPRB0362
PMEN399739 PMEN_4472PMEN_4472PMEN_4472PMEN_4472PMEN_4472
PLUM243265 PLU0176PLU0175PLU0175PLU0175PLU0175PLU0175
PING357804 PING_0131PING_0132PING_0132PING_0132PING_0132PING_0089
PHAL326442 PSHAB0208PSHAB0208PSHAB0208PSHAB0208PSHAB0208
PFLU220664 PFL_3074PFL_3074PFL_3074PFL_3074PFL_3074
PFLU216595 PFLU2741PFLU2741PFLU2741PFLU2741PFLU2741
PFLU205922 PFL_2636PFL_2636PFL_2636PFL_2636PFL_2636
PENT384676 PSEEN1989PSEEN1989PSEEN1989PSEEN1989PSEEN1989
PATL342610 PATL_0779PATL_0779PATL_0779PATL_0834PATL_3649
PAER208964 PA2342PA2342PA2342PA2342PA2342
PAER208963 PA14_34360PA14_34360PA14_34360PA14_34360PA14_34360
OANT439375 OANT_4096OANT_4096OANT_3848OANT_3906OANT_4096
MSUC221988 MS0544MS0529MS0529MS0529MS0529MS0410
MSP400668 MMWYL1_2780MMWYL1_2779MMWYL1_2779MMWYL1_2779MMWYL1_2779MMWYL1_2779
MSP266779 MESO_4496MESO_4497MESO_4497MESO_4497MESO_4497MESO_4497
MSP189918 MKMS_4445MKMS_4445MKMS_4445MKMS_4445MKMS_4445
MSP164757 MJLS_4739MJLS_4739MJLS_4739MJLS_4739MJLS_4739
MSP164756 MMCS_4359MMCS_4359MMCS_4359MMCS_4359MMCS_4359
MSME246196 MSMEG_2907MSMEG_5576MSMEG_2907MSMEG_5576MSMEG_2907
MMAR394221 MMAR10_0230MMAR10_0223MMAR10_0223MMAR10_0223MMAR10_0223MMAR10_0223
MLOT266835 MLL4056MLR1886MLR1886MLL4920MLR1886MLR1886
MAVI243243 MAV_1054MAV_1052MAV_4838MAV_4838MAV_1052
LLAC272623 L0019L0241L0241L0241L33416
LLAC272622 LACR_1742LACR_1746LACR_1746LACR_1746LACR_1746LACR_0030
LCHO395495 LCHO_0894LCHO_0894LCHO_0134LCHO_0134LCHO_0134
LCAS321967 LSEI_2885LSEI_2885LSEI_2885LSEI_2885LSEI_2885
KRAD266940 KRAD_0587KRAD_0583KRAD_0300KRAD_0583KRAD_4205KRAD_0583
KPNE272620 GKPORF_B2865GKPORF_B1895GKPORF_B1895GKPORF_B1895GKPORF_B4207GKPORF_B3305
HCHE349521 HCH_01298HCH_01298HCH_01298HCH_01298HCH_01298
GTHE420246 GTNG_1765GTNG_1844GTNG_1844GTNG_1844GTNG_1844
GOXY290633 GOX1432GOX1432GOX1432GOX0849GOX1432
GFOR411154 GFO_1705GFO_1705GFO_1705GFO_1705GFO_1705
FSP1855 FRANEAN1_3197FRANEAN1_3198FRANEAN1_3198FRANEAN1_3198FRANEAN1_3198FRANEAN1_3198
FJOH376686 FJOH_4262FJOH_4259FJOH_4259FJOH_4259FJOH_4259FJOH_4259
ESP42895 ENT638_3546ENT638_1935ENT638_1935ENT638_1935ENT638_2013ENT638_0135
EFER585054 EFER_4383EFER_3029EFER_3029EFER_3029EFER_1553EFER_3591
ECOO157 UXACUXUBUXUBUXUBUXABMTLD
ECOL83334 ECS3974ECS2151ECS2151ECS2151ECS2128ECS4476
ECOL585397 ECED1_3759ECED1_2622ECED1_2622ECED1_2622ECED1_1653ECED1_4282
ECOL585057 ECIAI39_3589ECIAI39_4796ECIAI39_4796ECIAI39_4796ECIAI39_1785ECIAI39_4115
ECOL585056 ECUMN_3576ECUMN_2509ECUMN_2509ECUMN_2509ECUMN_1789ECUMN_4111
ECOL585055 EC55989_3506EC55989_4988EC55989_4988EC55989_4988EC55989_1654EC55989_4064
ECOL585035 ECS88_3488ECS88_4941ECS88_4941ECS88_4941ECS88_1598ECS88_4013
ECOL585034 ECIAI1_3238ECIAI1_4539ECIAI1_4539ECIAI1_4539ECIAI1_1533ECIAI1_3770
ECOL481805 ECOLC_0608ECOLC_2116ECOLC_3741ECOLC_2116ECOLC_2137ECOLC_0112
ECOL469008 ECBD_0648ECBD_2097ECBD_2097ECBD_2097ECBD_2121ECBD_0128
ECOL439855 ECSMS35_3384ECSMS35_1623ECSMS35_1623ECSMS35_1623ECSMS35_1651ECSMS35_3933
ECOL413997 ECB_02961ECB_04192ECB_04192ECB_04192ECB_01478ECB_03455
ECOL409438 ECSE_3373ECSE_4596ECSE_4596ECSE_4596ECSE_1611ECSE_3879
ECOL405955 APECO1_3327APECO1_4382APECO1_4382APECO1_4382APECO1_641APECO1_2857
ECOL364106 UTI89_C3530UTI89_C5019UTI89_C5019UTI89_C5019UTI89_C1740UTI89_C4138
ECOL362663 ECP_3183ECP_4659ECP_4659ECP_4659ECP_1505ECP_3698
ECOL331111 ECE24377A_3560ECE24377A_1751ECE24377A_1751ECE24377A_1751ECE24377A_1721ECE24377A_4099
ECOL316407 ECK3083:JW3063:B3092ECK4314:JW4286:B4323ECK4314:JW4286:B4323ECK4314:JW4286:B4323ECK1514:JW1514:B1521ECK3589:JW3574:B3600
ECOL199310 C3850C5403C5403C5403C1968C4417
ECAR218491 ECA0645ECA0920ECA0920ECA0920ECA4383ECA0088
DGEO319795 DGEO_2866DGEO_2866DGEO_2866DGEO_2866DGEO_2866
CSP78 CAUL_1756CAUL_1753CAUL_1753CAUL_1753CAUL_1753CAUL_1753
CSP501479 CSE45_4888CSE45_4888CSE45_4888CSE45_4888CSE45_4888
CSAL290398 CSAL_2979CSAL_2979CSAL_2979CSAL_2979CSAL_2979
CPHY357809 CPHY_2743CPHY_1062CPHY_1062CPHY_1062CPHY_2741CPHY_2741
CJAP155077 CJA_2772CJA_0180CJA_0180CJA_0180CJA_0180CJA_0180
CGLU196627 CG2731CG0143CG0143CG0143CG0143CG0143
CEFF196164 CE2377CE2378CE2378CE2378CE2378CE2378
CBEI290402 CBEI_4657CBEI_1833CBEI_1838CBEI_1838CBEI_1838CBEI_0245
CAULO CC1490CC1487CC1487CC1487CC1487CC1487
CACE272562 CAC0692CAC0695CAC0695CAC0695CAC0695CAC0157
BVIE269482 BCEP1808_2702BCEP1808_2702BCEP1808_2702BCEP1808_2702BCEP1808_2702
BTHE226186 BT_0823BT_0825BT_0825BT_0825BT_0825
BTHA271848 BTH_I0703BTH_I0703BTH_I0703BTH_I0703BTH_I0703
BSUB BSU12300BSU12380BSU12380BSU12380BSU12380BSU03990
BPUM315750 BPUM_2987BPUM_2985BPUM_2985BPUM_2985BPUM_2985BPUM_0371
BPSE320373 BURPS668_A2094BURPS668_A2094BURPS668_A2094BURPS668_A2094BURPS668_A2094
BPSE320372 BURPS1710B_B0609BURPS1710B_B0609BURPS1710B_B0609BURPS1710B_B0609BURPS1710B_B0609
BPSE272560 BPSS1476BPSS1476BPSS1476BPSL0840BPSS1476
BPET94624 BPET3940BPET3940BPET3940BPET3940BPET3940
BOVI236 GBOORFA0836GBOORFA0836GBOORFA0836GBOORFA0836GBOORFA0836
BMEL359391 BAB2_0426BAB2_0426BAB2_0426BAB2_0426BAB2_0426
BMEL224914 BMEII0476BMEII0478BMEII0478BMEII0478BMEII0478BMEII0478
BMAL320389 BMA10247_A1646BMA10247_A1646BMA10247_A1646BMA10247_0091BMA10247_A1646
BMAL320388 BMASAVP1_0581BMASAVP1_0581BMASAVP1_0581BMASAVP1_A0643BMASAVP1_0581
BMAL243160 BMA_A0768BMA_A0768BMA_A0768BMA_0344BMA_A0768
BLIC279010 BL00708BL00711BL00711BL00711BL00711BL02815
BJAP224911 BLR6836BLR6836BLR6836BLR6836BLR6836
BHAL272558 BH0705BH0492BH0492BH0492BH0492BH3851
BCLA66692 ABC0995ABC0443ABC1154ABC0443ABC0443ABC2926
BCEN331272 BCEN2424_4641BCEN2424_4641BCEN2424_4641BCEN2424_6703BCEN2424_4641
BCEN331271 BCEN_3727BCEN_3727BCEN_3727BCEN_6468BCEN_3727
BCAN483179 BCAN_B0827BCAN_B0825BCAN_B0825BCAN_B0825BCAN_B0825BCAN_B0825
BAMY326423 RBAM_012380RBAM_012410RBAM_012410RBAM_012410RBAM_012410RBAM_004250
BAMB398577 BAMMC406_5134BAMMC406_5134BAMMC406_5134BAMMC406_1248BAMMC406_5134
BAMB339670 BAMB_4601BAMB_4601BAMB_4601BAMB_1222BAMB_4601
BABO262698 BRUAB2_0421BRUAB2_0421BRUAB2_0421BRUAB2_0421BRUAB2_0421
ASP1667 ARTH_0502ARTH_0503ARTH_0503ARTH_0503ARTH_0503ARTH_4003
ANAE240017 ANA_2774ANA_2774ANA_2774ANA_2774ANA_2774
AMET293826 AMET_1291AMET_1293AMET_0555AMET_0555AMET_0555AMET_0555
ACEL351607 ACEL_0905ACEL_0905ACEL_0905ACEL_0905ACEL_0905
ACAU438753 AZC_3342AZC_3347AZC_3347AZC_3347AZC_3347AZC_3347
AAUR290340 AAUR_0527AAUR_0528AAUR_0528AAUR_0528AAUR_0528AAUR_3858


Organism features enriched in list (features available for 149 out of the 165 orgs in the list)
Feature    Pvalue       Num occurrences in list  Total num occurrences  
Arrangment:Chains 0.00196861392
Disease:Bubonic_plague 0.000258366
Disease:Dysentery 0.000258366
Disease:Gastroenteritis 0.00011711013
Endospores:No 0.000123636211
GC_Content_Range4:0-40 1.367e-2110213
GC_Content_Range4:40-60 0.000011279224
GC_Content_Range4:60-100 5.586e-760145
GC_Content_Range7:0-30 8.651e-6147
GC_Content_Range7:30-40 1.062e-149166
GC_Content_Range7:50-60 0.000015845107
GC_Content_Range7:60-70 1.353e-758134
Genome_Size_Range5:0-2 5.934e-212155
Genome_Size_Range5:2-4 6.890e-727197
Genome_Size_Range5:4-6 1.016e-1790184
Genome_Size_Range5:6-10 6.504e-93047
Genome_Size_Range9:1-2 2.239e-162128
Genome_Size_Range9:2-3 2.351e-89120
Genome_Size_Range9:4-5 1.127e-74696
Genome_Size_Range9:5-6 4.600e-84488
Genome_Size_Range9:6-8 8.955e-92638
Gram_Stain:Gram_Neg 2.658e-8113333
Gram_Stain:Gram_Pos 0.006713528150
Habitat:Multiple 0.001847459178
Habitat:Specialized 0.0004304453
Motility:No 4.943e-717151
Motility:Yes 4.494e-794267
Optimal_temp.:25-30 0.00006951319
Oxygen_Req:Anaerobic 0.000037111102
Oxygen_Req:Facultative 0.000670167201
Shape:Coccus 0.0000938882
Shape:Rod 3.198e-17130347
Temp._range:Mesophilic 0.0079698130473
Temp._range:Thermophilic 0.0074369335



Back to top


ORGANISMS CONTAINING AT MOST 1 GENES FROM THE GROUP:

Total number of orgs: 423
Effective number of orgs (counting one per cluster within 468 clusters): 329

Organism list
Homologs in each organism in the list
Features enriched in organism list


Follow (ncbi) link, when present, to find the set of organism features for each organism
Org ID  Org Name  # genes in group found in org  
XFAS405440 ncbi Xylella fastidiosa M120
XFAS183190 ncbi Xylella fastidiosa Temecula10
XFAS160492 ncbi Xylella fastidiosa 9a5c0
WSUC273121 ncbi Wolinella succinogenes DSM 17400
WPIP955 Wolbachia pipientis0
WPIP80849 Wolbachia endosymbiont of Brugia malayi0
VFIS312309 ncbi Vibrio fischeri ES1140
UURE95667 Ureaplasma urealyticum serovar 130
UURE95664 Ureaplasma urealyticum serovar 100
UPAR505682 ncbi Ureaplasma parvum serovar 3 str. ATCC 278150
UMET351160 ncbi uncultured methanogenic archaeon RC-I0
TWHI218496 ncbi Tropheryma whipplei TW08/270
TWHI203267 ncbi Tropheryma whipplei Twist0
TVOL273116 ncbi Thermoplasma volcanium GSS10
TTHE300852 ncbi Thermus thermophilus HB80
TTHE262724 ncbi Thermus thermophilus HB270
TROS309801 ncbi Thermomicrobium roseum DSM 51590
TPEN368408 ncbi Thermofilum pendens Hrk 50
TPAL243276 ncbi Treponema pallidum pallidum Nichols0
TLET416591 ncbi Thermotoga lettingae TMO1
TKOD69014 ncbi Thermococcus kodakarensis KOD10
TFUS269800 ncbi Thermobifida fusca YX0
TERY203124 ncbi Trichodesmium erythraeum IMS1010
TELO197221 ncbi Thermosynechococcus elongatus BP-10
TDEN326298 ncbi Sulfurimonas denitrificans DSM 12510
TDEN292415 ncbi Thiobacillus denitrificans ATCC 252590
TDEN243275 ncbi Treponema denticola ATCC 354050
TCRU317025 ncbi Thiomicrospira crunogena XCL-20
TACI273075 ncbi Thermoplasma acidophilum DSM 17280
SWOL335541 ncbi Syntrophomonas wolfei wolfei Goettingen0
STRO369723 ncbi Salinispora tropica CNB-4400
STOK273063 ncbi Sulfolobus tokodaii 70
STHE322159 ncbi Streptococcus thermophilus LMD-90
STHE299768 ncbi Streptococcus thermophilus CNRZ10660
STHE292459 ncbi Symbiobacterium thermophilum IAM 148630
STHE264199 ncbi Streptococcus thermophilus LMG 183110
SSUI391296 ncbi Streptococcus suis 98HAH331
SSUI391295 ncbi Streptococcus suis 05ZYH331
SSP94122 ncbi Shewanella sp. ANA-30
SSP84588 ncbi Synechococcus sp. WH 81020
SSP64471 ncbi Synechococcus sp. CC93110
SSP387093 ncbi Sulfurovum sp. NBC37-10
SSP321332 ncbi Synechococcus sp. JA-2-3Ba(2-13)0
SSP321327 ncbi Synechococcus sp. JA-3-3Ab0
SSP1148 ncbi Synechocystis sp. PCC 68030
SSP1131 Synechococcus sp. CC96050
SSOL273057 ncbi Sulfolobus solfataricus P20
SSED425104 ncbi Shewanella sediminis HAW-EB30
SRUB309807 ncbi Salinibacter ruber DSM 138550
SPYO370554 ncbi Streptococcus pyogenes MGAS107500
SPYO370553 ncbi Streptococcus pyogenes MGAS20960
SPYO370552 ncbi Streptococcus pyogenes MGAS102701
SPYO370551 ncbi Streptococcus pyogenes MGAS94290
SPYO319701 ncbi Streptococcus pyogenes MGAS61800
SPYO293653 ncbi Streptococcus pyogenes MGAS50050
SPYO286636 ncbi Streptococcus pyogenes MGAS103940
SPYO198466 ncbi Streptococcus pyogenes MGAS3150
SPYO193567 ncbi Streptococcus pyogenes SSI-10
SPYO186103 ncbi Streptococcus pyogenes MGAS82320
SPYO160490 ncbi Streptococcus pyogenes M1 GAS0
SPNE487213 ncbi Streptococcus pneumoniae Taiwan19F-140
SPNE171101 ncbi Streptococcus pneumoniae R61
SPNE170187 ncbi Streptococcus pneumoniae G541
SPEA398579 ncbi Shewanella pealeana ATCC 7003450
SONE211586 ncbi Shewanella oneidensis MR-10
SMAR399550 ncbi Staphylothermus marinus F10
SLOI323850 ncbi Shewanella loihica PV-40
SHAL458817 ncbi Shewanella halifaxensis HAW-EB40
SGOR29390 Streptococcus gordonii Challis0
SFUM335543 ncbi Syntrophobacter fumaroxidans MPOB0
SEPI176280 ncbi Staphylococcus epidermidis ATCC 122280
SEPI176279 ncbi Staphylococcus epidermidis RP62A0
SELO269084 ncbi Synechococcus elongatus PCC 63010
SDEN318161 ncbi Shewanella denitrificans OS2170
SCO ncbi Streptomyces coelicolor A3(2)0
SBAL402882 ncbi Shewanella baltica OS1850
SBAL399599 ncbi Shewanella baltica OS1950
SAVE227882 ncbi Streptomyces avermitilis MA-46800
SAUR93062 ncbi Staphylococcus aureus aureus COL1
SAUR93061 ncbi Staphylococcus aureus aureus NCTC 83251
SAUR426430 ncbi Staphylococcus aureus aureus Newman1
SAUR418127 ncbi Staphylococcus aureus aureus Mu31
SAUR367830 Staphylococcus aureus aureus USA3001
SAUR359787 ncbi Staphylococcus aureus aureus JH11
SAUR359786 ncbi Staphylococcus aureus aureus JH91
SAUR282459 ncbi Staphylococcus aureus aureus MSSA4761
SAUR282458 ncbi Staphylococcus aureus aureus MRSA2521
SAUR273036 ncbi Staphylococcus aureus RF1221
SAUR196620 ncbi Staphylococcus aureus aureus MW21
SAUR158879 ncbi Staphylococcus aureus aureus N3151
SAUR158878 ncbi Staphylococcus aureus aureus Mu501
SARE391037 ncbi Salinispora arenicola CNS-2050
SAGA211110 ncbi Streptococcus agalactiae NEM3161
SAGA208435 ncbi Streptococcus agalactiae 2603V/R1
SAGA205921 ncbi Streptococcus agalactiae A9091
SACI56780 ncbi Syntrophus aciditrophicus SB0
SACI330779 ncbi Sulfolobus acidocaldarius DSM 6390
RXYL266117 ncbi Rubrobacter xylanophilus DSM 99410
RTYP257363 ncbi Rickettsia typhi Wilmington0
RSP357808 ncbi Roseiflexus sp. RS-10
RRUB269796 ncbi Rhodospirillum rubrum ATCC 111700
RRIC452659 ncbi Rickettsia rickettsii Iowa0
RRIC392021 ncbi Rickettsia rickettsii Sheila Smith0
RPRO272947 ncbi Rickettsia prowazekii Madrid E0
RPAL316058 ncbi Rhodopseudomonas palustris HaA20
RPAL316057 ncbi Rhodopseudomonas palustris BisB50
RPAL316056 ncbi Rhodopseudomonas palustris BisB180
RPAL316055 ncbi Rhodopseudomonas palustris BisA530
RPAL258594 ncbi Rhodopseudomonas palustris CGA0090
RMET266264 ncbi Ralstonia metallidurans CH340
RMAS416276 ncbi Rickettsia massiliae MTU50
RFER338969 ncbi Rhodoferax ferrireducens T1180
RFEL315456 ncbi Rickettsia felis URRWXCal20
REUT264198 ncbi Ralstonia eutropha JMP1340
RCON272944 ncbi Rickettsia conorii Malish 70
RCAS383372 ncbi Roseiflexus castenholzii DSM 139410
RCAN293613 ncbi Rickettsia canadensis McKiel0
RBEL391896 ncbi Rickettsia bellii OSU 85-3890
RBEL336407 ncbi Rickettsia bellii RML369-C0
RAKA293614 ncbi Rickettsia akari Hartford0
PTOR263820 ncbi Picrophilus torridus DSM 97900
PTHE370438 ncbi Pelotomaculum thermopropionicum SI0
PSP56811 Psychrobacter sp.0
PSP312153 ncbi Polynucleobacter necessarius asymbioticus QLW-P1DMWA-10
PPUT76869 ncbi Pseudomonas putida GB-11
PPUT351746 ncbi Pseudomonas putida F11
PPUT160488 ncbi Pseudomonas putida KT24401
PPEN278197 ncbi Pediococcus pentosaceus ATCC 257450
PMOB403833 ncbi Petrotoga mobilis SJ951
PMAR93060 ncbi Prochlorococcus marinus MIT 92150
PMAR74547 ncbi Prochlorococcus marinus MIT 93130
PMAR74546 ncbi Prochlorococcus marinus MIT 93120
PMAR59920 ncbi Prochlorococcus marinus NATL2A0
PMAR167555 ncbi Prochlorococcus marinus NATL1A0
PMAR167546 ncbi Prochlorococcus marinus MIT 93010
PMAR167542 ncbi Prochlorococcus marinus MIT 95150
PMAR167540 Prochlorococcus marinus pastoris MED4ax0
PMAR167539 ncbi Prochlorococcus marinus marinus CCMP13750
PMAR146891 ncbi Prochlorococcus marinus AS96010
PLUT319225 ncbi Chlorobium luteolum DSM 2730
PISL384616 ncbi Pyrobaculum islandicum DSM 41840
PINT246198 Prevotella intermedia 170
PHOR70601 ncbi Pyrococcus horikoshii OT30
PGIN242619 ncbi Porphyromonas gingivalis W830
PFUR186497 ncbi Pyrococcus furiosus DSM 36380
PDIS435591 ncbi Parabacteroides distasonis ATCC 85031
PCRY335284 ncbi Psychrobacter cryohalolentis K50
PCAR338963 ncbi Pelobacter carbinolicus DSM 23800
PAST100379 Onion yellows phytoplasma0
PARS340102 ncbi Pyrobaculum arsenaticum DSM 135140
PARC259536 ncbi Psychrobacter arcticus 273-40
PAER178306 ncbi Pyrobaculum aerophilum IM20
PABY272844 ncbi Pyrococcus abyssi GE50
OTSU357244 ncbi Orientia tsutsugamushi Boryong0
OCAR504832 ncbi Oligotropha carboxidovorans OM50
NWIN323098 ncbi Nitrobacter winogradskyi Nb-2550
NSP387092 ncbi Nitratiruptor sp. SB155-20
NSP35761 Nocardioides sp.0
NSP103690 ncbi Nostoc sp. PCC 71200
NSEN222891 ncbi Neorickettsia sennetsu Miyayama0
NPHA348780 ncbi Natronomonas pharaonis DSM 21600
NOCE323261 ncbi Nitrosococcus oceani ATCC 197070
NMUL323848 ncbi Nitrosospira multiformis ATCC 251960
NMEN374833 ncbi Neisseria meningitidis 0534420
NMEN272831 ncbi Neisseria meningitidis FAM180
NMEN122587 ncbi Neisseria meningitidis Z24910
NMEN122586 ncbi Neisseria meningitidis MC580
NHAM323097 ncbi Nitrobacter hamburgensis X140
NGON242231 ncbi Neisseria gonorrhoeae FA 10900
NFAR247156 ncbi Nocardia farcinica IFM 101520
NEUT335283 ncbi Nitrosomonas eutropha C910
NEUR228410 ncbi Nitrosomonas europaea ATCC 197180
NARO279238 ncbi Novosphingobium aromaticivorans DSM 124440
MXAN246197 ncbi Myxococcus xanthus DK 16220
MVAN350058 ncbi Mycobacterium vanbaalenii PYR-10
MTUB419947 ncbi Mycobacterium tuberculosis H37Ra0
MTUB336982 ncbi Mycobacterium tuberculosis F110
MTHE349307 ncbi Methanosaeta thermophila PT0
MTHE187420 ncbi Methanothermobacter thermautotrophicus Delta H0
MTBRV ncbi Mycobacterium tuberculosis H37Rv0
MTBCDC ncbi Mycobacterium tuberculosis CDC15510
MSYN262723 ncbi Mycoplasma synoviae 530
MSTA339860 ncbi Methanosphaera stadtmanae DSM 30910
MSP409 Methylobacterium sp.0
MSED399549 ncbi Metallosphaera sedula DSM 53480
MPUL272635 ncbi Mycoplasma pulmonis UAB CTIP1
MPNE272634 ncbi Mycoplasma pneumoniae M1291
MPET420662 ncbi Methylibium petroleiphilum PM10
MPEN272633 ncbi Mycoplasma penetrans HF-20
MMYC272632 ncbi Mycoplasma mycoides mycoides SC str. PG11
MMOB267748 ncbi Mycoplasma mobile 163K0
MMAZ192952 ncbi Methanosarcina mazei Go10
MMAR444158 ncbi Methanococcus maripaludis C60
MMAR426368 ncbi Methanococcus maripaludis C70
MMAR402880 ncbi Methanococcus maripaludis C50
MMAR368407 ncbi Methanoculleus marisnigri JR10
MMAR267377 ncbi Methanococcus maripaludis S20
MMAG342108 ncbi Magnetospirillum magneticum AMB-10
MLEP272631 ncbi Mycobacterium leprae TN0
MLAB410358 ncbi Methanocorpusculum labreanum Z0
MKAN190192 ncbi Methanopyrus kandleri AV190
MJAN243232 ncbi Methanocaldococcus jannaschii DSM 26610
MHYO295358 ncbi Mycoplasma hyopneumoniae 2321
MHYO262722 ncbi Mycoplasma hyopneumoniae 74481
MHYO262719 ncbi Mycoplasma hyopneumoniae J1
MHUN323259 ncbi Methanospirillum hungatei JF-10
MGIL350054 ncbi Mycobacterium gilvum PYR-GCK0
MGEN243273 ncbi Mycoplasma genitalium G370
MFLO265311 ncbi Mesoplasma florum L10
MFLA265072 ncbi Methylobacillus flagellatus KT1
MEXT419610 ncbi Methylobacterium extorquens PA10
MCAP340047 ncbi Mycoplasma capricolum capricolum ATCC 273431
MCAP243233 ncbi Methylococcus capsulatus Bath0
MBUR259564 ncbi Methanococcoides burtonii DSM 62420
MBOV410289 ncbi Mycobacterium bovis BCG str. Pasteur 1173P20
MBOV233413 ncbi Mycobacterium bovis AF2122/970
MBAR269797 ncbi Methanosarcina barkeri Fusaro0
MART243272 ncbi Mycoplasma arthritidis 158L3-10
MAQU351348 ncbi Marinobacter aquaeolei VT80
MAER449447 ncbi Microcystis aeruginosa NIES-8430
MAEO419665 ncbi Methanococcus aeolicus Nankai-30
MACE188937 ncbi Methanosarcina acetivorans C2A0
MABS561007 ncbi Mycobacterium abscessus ATCC 199770
LWEL386043 ncbi Listeria welshimeri serovar 6b str. SLCC53340
LSPH444177 ncbi Lysinibacillus sphaericus C3-410
LSAK314315 ncbi Lactobacillus sakei sakei 23K1
LREU557436 ncbi Lactobacillus reuteri DSM 200160
LPNE400673 ncbi Legionella pneumophila Corby0
LPNE297246 ncbi Legionella pneumophila Paris0
LPNE297245 ncbi Legionella pneumophila Lens0
LPNE272624 ncbi Legionella pneumophila pneumophila Philadelphia 10
LMON265669 ncbi Listeria monocytogenes 4b F23650
LMON169963 ncbi Listeria monocytogenes EGD-e0
LMES203120 ncbi Leuconostoc mesenteroides mesenteroides ATCC 82930
LJOH257314 ncbi Lactobacillus johnsonii NCC 5330
LINT363253 ncbi Lawsonia intracellularis PHE/MN1-000
LINT267671 ncbi Leptospira interrogans serovar Copenhageni str. Fiocruz L1-1300
LINT189518 ncbi Leptospira interrogans serovar Lai str. 566010
LINN272626 ncbi Listeria innocua Clip112620
LHEL405566 ncbi Lactobacillus helveticus DPC 45710
LGAS324831 ncbi Lactobacillus gasseri ATCC 333230
LDEL390333 ncbi Lactobacillus delbrueckii bulgaricus ATCC 118420
LDEL321956 ncbi Lactobacillus delbrueckii bulgaricus ATCC BAA-3650
LBOR355277 ncbi Leptospira borgpetersenii serovar Hardjo-bovis JB1970
LBOR355276 ncbi Leptospira borgpetersenii serovar Hardjo-bovis L5500
LBIF456481 ncbi Leptospira biflexa serovar Patoc strain Patoc 1 (Paris)0
LBIF355278 ncbi Leptospira biflexa serovar Patoc strain Patoc 1 (Ames)0
LACI272621 ncbi Lactobacillus acidophilus NCFM0
JSP375286 ncbi Janthinobacterium sp. Marseille0
ILOI283942 ncbi Idiomarina loihiensis L2TR0
IHOS453591 ncbi Ignicoccus hospitalis KIN4/I0
HWAL362976 ncbi Haloquadratum walsbyi DSM 167900
HSP64091 ncbi Halobacterium sp. NRC-10
HSAL478009 ncbi Halobacterium salinarum R10
HPYL85963 ncbi Helicobacter pylori J990
HPYL357544 ncbi Helicobacter pylori HPAG10
HPY ncbi Helicobacter pylori 266950
HNEP81032 Hyphomonas neptunium0
HMUK485914 ncbi Halomicrobium mukohataei DSM 122860
HMOD498761 ncbi Heliobacterium modesticaldum Ice10
HMAR272569 ncbi Haloarcula marismortui ATCC 430490
HINF71421 ncbi Haemophilus influenzae Rd KW200
HINF374930 ncbi Haemophilus influenzae PittEE0
HINF281310 ncbi Haemophilus influenzae 86-028NP1
HHEP235279 ncbi Helicobacter hepaticus ATCC 514490
HHAL349124 ncbi Halorhodospira halophila SL10
HDUC233412 ncbi Haemophilus ducreyi 35000HP0
HBUT415426 ncbi Hyperthermus butylicus DSM 54560
HAUR316274 ncbi Herpetosiphon aurantiacus ATCC 237790
HARS204773 ncbi Herminiimonas arsenicoxydans0
HACI382638 ncbi Helicobacter acinonychis Sheeba0
GVIO251221 ncbi Gloeobacter violaceus PCC 74210
GURA351605 ncbi Geobacter uraniireducens Rf40
GSUL243231 ncbi Geobacter sulfurreducens PCA0
GMET269799 ncbi Geobacter metallireducens GS-151
GBET391165 ncbi Granulibacter bethesdensis CGDNIH10
FTUL458234 ncbi Francisella tularensis holarctica FTNF002-000
FTUL418136 ncbi Francisella tularensis tularensis WY96-34180
FTUL401614 ncbi Francisella novicida U1120
FTUL393115 ncbi Francisella tularensis tularensis FSC1980
FTUL393011 ncbi Francisella tularensis holarctica OSU180
FTUL351581 Francisella tularensis holarctica FSC2000
FSUC59374 ncbi Fibrobacter succinogenes succinogenes S850
FSP106370 ncbi Frankia sp. CcI30
FRANT ncbi Francisella tularensis tularensis SCHU S40
FPHI484022 ncbi Francisella philomiragia philomiragia ATCC 250170
FNUC190304 ncbi Fusobacterium nucleatum nucleatum ATCC 255860
FNOD381764 ncbi Fervidobacterium nodosum Rt17-B10
FMAG334413 ncbi Finegoldia magna ATCC 293280
FALN326424 ncbi Frankia alni ACN14a0
ERUM302409 ncbi Ehrlichia ruminantium Gardel0
ERUM254945 ncbi Ehrlichia ruminantium Welgevonden0
ELIT314225 ncbi Erythrobacter litoralis HTCC25940
ECHA205920 ncbi Ehrlichia chaffeensis Arkansas0
ECAN269484 ncbi Ehrlichia canis Jake0
DVUL882 ncbi Desulfovibrio vulgaris Hildenborough0
DSP255470 ncbi Dehalococcoides sp. CBDB10
DSP216389 ncbi Dehalococcoides sp. BAV10
DRED349161 ncbi Desulfotomaculum reducens MI-10
DRAD243230 ncbi Deinococcus radiodurans R10
DPSY177439 ncbi Desulfotalea psychrophila LSv540
DOLE96561 ncbi Desulfococcus oleovorans Hxd30
DNOD246195 ncbi Dichelobacter nodosus VCS1703A0
DHAF138119 ncbi Desulfitobacterium hafniense Y510
DETH243164 ncbi Dehalococcoides ethenogenes 1950
DDES207559 ncbi Desulfovibrio desulfuricans desulfuricans G200
DARO159087 ncbi Dechloromonas aromatica RCB0
CVIO243365 ncbi Chromobacterium violaceum ATCC 124720
CVES412965 ncbi Candidatus Vesicomyosocius okutanii HA0
CTRA471473 ncbi Chlamydia trachomatis L2b/UCH-1/proctitis0
CTRA471472 ncbi Chlamydia trachomatis 434/Bu0
CTET212717 ncbi Clostridium tetani E880
CTEP194439 ncbi Chlorobium tepidum TLS0
CSUL444179 ncbi Candidatus Sulcia muelleri GWSS0
CRUT413404 ncbi Candidatus Ruthia magnifica Cm (Calyptogena magnifica)0
CPSY167879 ncbi Colwellia psychrerythraea 34H0
CPRO264201 ncbi Candidatus Protochlamydia amoebophila UWE250
CPNE182082 ncbi Chlamydophila pneumoniae TW-1830
CPNE138677 ncbi Chlamydophila pneumoniae J1380
CPNE115713 ncbi Chlamydophila pneumoniae CWL0290
CPNE115711 ncbi Chlamydophila pneumoniae AR390
CPER289380 ncbi Clostridium perfringens SM1010
CPER195103 ncbi Clostridium perfringens ATCC 131240
CPER195102 ncbi Clostridium perfringens 131
CPEL335992 ncbi Candidatus Pelagibacter ubique HTCC10620
CNOV386415 ncbi Clostridium novyi NT0
CMUR243161 ncbi Chlamydia muridarum Nigg0
CMIC443906 ncbi Clavibacter michiganensis michiganensis NCPPB 3821
CMIC31964 ncbi Clavibacter michiganensis sepedonicus1
CMET456442 ncbi Candidatus Methanoregula boonei 6A80
CMAQ397948 ncbi Caldivirga maquilingensis IC-1670
CKOR374847 ncbi Candidatus Korarchaeum cryptofilum OPF80
CKLU431943 ncbi Clostridium kluyveri DSM 5551
CJEJ407148 ncbi Campylobacter jejuni jejuni 811160
CJEJ360109 ncbi Campylobacter jejuni doylei 269.970
CJEJ354242 ncbi Campylobacter jejuni jejuni 81-1760
CJEJ195099 ncbi Campylobacter jejuni RM12210
CJEJ192222 ncbi Campylobacter jejuni jejuni NCTC 111680
CJEI306537 ncbi Corynebacterium jeikeium K4110
CHYD246194 ncbi Carboxydothermus hydrogenoformans Z-29010
CHUT269798 ncbi Cytophaga hutchinsonii ATCC 334060
CHOM360107 ncbi Campylobacter hominis ATCC BAA-3810
CFET360106 ncbi Campylobacter fetus fetus 82-400
CFEL264202 ncbi Chlamydophila felis Fe/C-560
CDIP257309 ncbi Corynebacterium diphtheriae NCTC 131290
CDES477974 ncbi Candidatus Desulforudis audaxviator MP104C0
CCUR360105 ncbi Campylobacter curvus 525.920
CCON360104 ncbi Campylobacter concisus 138260
CCHL340177 ncbi Chlorobium chlorochromatii CaD30
CCAV227941 ncbi Chlamydophila caviae GPIC0
CBUR434922 ncbi Coxiella burnetii Dugway 5J108-1110
CBUR360115 ncbi Coxiella burnetii RSA 3310
CBUR227377 ncbi Coxiella burnetii RSA 4930
CBOT536232 ncbi Clostridium botulinum A2 str. Kyoto0
CBOT515621 ncbi Clostridium botulinum Ba4 str. 6570
CBOT508765 ncbi Clostridium botulinum B str. Eklund 17B0
CBOT498213 ncbi Clostridium botulinum B1 str. Okra0
CBOT441772 ncbi Clostridium botulinum F str. Langeland0
CBOT441771 ncbi Clostridium botulinum A str. Hall0
CBOT441770 ncbi Clostridium botulinum A str. ATCC 193970
CBOT36826 Clostridium botulinum A0
CBLO291272 ncbi Candidatus Blochmannia pennsylvanicus BPEN0
CBLO203907 ncbi Candidatus Blochmannia floridanus0
CABO218497 ncbi Chlamydophila abortus S26/30
BXEN266265 ncbi Burkholderia xenovorans LB4000
BWEI315730 ncbi Bacillus weihenstephanensis KBAB40
BTUR314724 ncbi Borrelia turicatae 91E1350
BTRI382640 ncbi Bartonella tribocorum CIP 1054760
BTHU412694 ncbi Bacillus thuringiensis Al Hakam0
BTHU281309 ncbi Bacillus thuringiensis serovar konkukian str. 97-270
BSUI470137 ncbi Brucella suis ATCC 234451
BSUI204722 ncbi Brucella suis 13301
BSP376 Bradyrhizobium sp.0
BSP107806 ncbi Buchnera aphidicola APS (Acyrthosiphon pisum)1
BQUI283165 ncbi Bartonella quintana Toulouse0
BPER257313 ncbi Bordetella pertussis Tohama I0
BPAR257311 ncbi Bordetella parapertussis 128220
BLON206672 ncbi Bifidobacterium longum NCC27050
BHER314723 ncbi Borrelia hermsii DAH0
BHEN283166 ncbi Bartonella henselae Houston-10
BGAR290434 ncbi Borrelia garinii PBi0
BFRA295405 ncbi Bacteroides fragilis YCH461
BFRA272559 ncbi Bacteroides fragilis NCTC 93431
BCIC186490 Candidatus Baumannia cicadellinicola0
BCER572264 ncbi Bacillus cereus 03BB1020
BCER405917 Bacillus cereus W0
BCER315749 ncbi Bacillus cytotoxicus NVH 391-980
BCER288681 ncbi Bacillus cereus E33L0
BCER226900 ncbi Bacillus cereus ATCC 145790
BBUR224326 ncbi Borrelia burgdorferi B310
BBRO257310 ncbi Bordetella bronchiseptica RB500
BBAC360095 ncbi Bartonella bacilliformis KC5830
BBAC264462 ncbi Bdellovibrio bacteriovorus HD1000
BAPH372461 ncbi Buchnera aphidicola Cc (Cinara cedri)0
BAPH198804 ncbi Buchnera aphidicola Sg (Schizaphis graminum)1
BANT592021 ncbi Bacillus anthracis A02480
BANT568206 ncbi Bacillus anthracis CDC 6840
BANT261594 ncbi Bacillus anthracis Ames Ancestor0
BANT260799 ncbi Bacillus anthracis Sterne0
BAFZ390236 ncbi Borrelia afzelii PKo0
AYEL322098 ncbi Aster yellows witches-broom phytoplasma AYWB0
AVAR240292 ncbi Anabaena variabilis ATCC 294130
AURANTIMONAS Aurantimonas manganoxydans SI85-9A10
ASP76114 ncbi Aromatoleum aromaticum EbN10
ASP62977 ncbi Acinetobacter sp. ADP11
ASP62928 ncbi Azoarcus sp. BH720
ASP232721 ncbi Acidovorax sp. JS420
APHA212042 ncbi Anaplasma phagocytophilum HZ0
APER272557 ncbi Aeropyrum pernix K10
AORE350688 ncbi Alkaliphilus oremlandii OhILAs0
AMAR329726 ncbi Acaryochloris marina MBIC110170
AMAR234826 ncbi Anaplasma marginale St. Maries0
ALAI441768 ncbi Acholeplasma laidlawii PG-8A0
AFUL224325 ncbi Archaeoglobus fulgidus DSM 43040
AFER243159 ncbi Acidithiobacillus ferrooxidans ATCC 232700
AEHR187272 ncbi Alkalilimnicola ehrlichii MLHE-10
ADEH290397 ncbi Anaeromyxobacter dehalogenans 2CP-C0
ABUT367737 ncbi Arcobacter butzleri RM40181
ABOR393595 ncbi Alcanivorax borkumensis SK20
ABAU360910 ncbi Bordetella avium 197N0
ABAC204669 ncbi Candidatus Koribacter versatilis Ellin3451
AAVE397945 ncbi Acidovorax citrulli AAC00-10
AAEO224324 ncbi Aquifex aeolicus VF50


Names of the homologs of the genes in the group in each of these orgs
  G81   G6816   EG20248   EG12036   EG11065   EG10616   
XFAS405440
XFAS183190
XFAS160492
WSUC273121
WPIP955
WPIP80849
VFIS312309
UURE95667
UURE95664
UPAR505682
UMET351160
TWHI218496
TWHI203267
TVOL273116
TTHE300852
TTHE262724
TROS309801
TPEN368408
TPAL243276
TLET416591 TLET_1289
TKOD69014
TFUS269800
TERY203124
TELO197221
TDEN326298
TDEN292415
TDEN243275
TCRU317025
TACI273075
SWOL335541
STRO369723
STOK273063
STHE322159
STHE299768
STHE292459
STHE264199
SSUI391296 SSU98_1174
SSUI391295 SSU05_1159
SSP94122
SSP84588
SSP64471
SSP387093
SSP321332
SSP321327
SSP1148
SSP1131
SSOL273057
SSED425104
SRUB309807
SPYO370554
SPYO370553
SPYO370552 MGAS10270_SPY1171
SPYO370551
SPYO319701
SPYO293653
SPYO286636
SPYO198466
SPYO193567
SPYO186103
SPYO160490
SPNE487213
SPNE171101 SPR0359
SPNE170187 SPN06006
SPEA398579
SONE211586
SMAR399550
SLOI323850
SHAL458817
SGOR29390
SFUM335543
SEPI176280
SEPI176279
SELO269084
SDEN318161
SCO
SBAL402882
SBAL399599
SAVE227882
SAUR93062 SACOL2149
SAUR93061 SAOUHSC_02403
SAUR426430 NWMN_2060
SAUR418127 SAHV_2143
SAUR367830 SAUSA300_2108
SAUR359787 SAURJH1_2229
SAUR359786 SAURJH9_2191
SAUR282459 SAS2060
SAUR282458 SAR2247
SAUR273036 SAB2039
SAUR196620 MW2085
SAUR158879 SA1963
SAUR158878 SAV2159
SARE391037
SAGA211110 GBS0674
SAGA208435 SAG_0701
SAGA205921 SAK_0827
SACI56780
SACI330779
RXYL266117
RTYP257363
RSP357808
RRUB269796
RRIC452659
RRIC392021
RPRO272947
RPAL316058
RPAL316057
RPAL316056
RPAL316055
RPAL258594
RMET266264
RMAS416276
RFER338969
RFEL315456
REUT264198
RCON272944
RCAS383372
RCAN293613
RBEL391896
RBEL336407
RAKA293614
PTOR263820
PTHE370438
PSP56811
PSP312153
PPUT76869 PPUTGB1_1571
PPUT351746 PPUT_3689
PPUT160488 PP_2052
PPEN278197
PMOB403833 PMOB_0854
PMAR93060
PMAR74547
PMAR74546
PMAR59920
PMAR167555
PMAR167546
PMAR167542
PMAR167540
PMAR167539
PMAR146891
PLUT319225
PISL384616
PINT246198
PHOR70601
PGIN242619
PFUR186497
PDIS435591 BDI_3184
PCRY335284
PCAR338963
PAST100379
PARS340102
PARC259536
PAER178306
PABY272844
OTSU357244
OCAR504832
NWIN323098
NSP387092
NSP35761
NSP103690
NSEN222891
NPHA348780
NOCE323261
NMUL323848
NMEN374833
NMEN272831
NMEN122587
NMEN122586
NHAM323097
NGON242231
NFAR247156
NEUT335283
NEUR228410
NARO279238
MXAN246197
MVAN350058
MTUB419947
MTUB336982
MTHE349307
MTHE187420
MTBRV
MTBCDC
MSYN262723
MSTA339860
MSP409
MSED399549
MPUL272635 MYPU_7500
MPNE272634 MPN652
MPET420662
MPEN272633
MMYC272632 MSC_0017
MMOB267748
MMAZ192952
MMAR444158
MMAR426368
MMAR402880
MMAR368407
MMAR267377
MMAG342108
MLEP272631
MLAB410358
MKAN190192
MJAN243232
MHYO295358 MHP568
MHYO262722 MHP7448_0549
MHYO262719 MHJ_0553
MHUN323259
MGIL350054
MGEN243273
MFLO265311
MFLA265072 MFLA_1729
MEXT419610
MCAP340047 MCAP_0032
MCAP243233
MBUR259564
MBOV410289
MBOV233413
MBAR269797
MART243272
MAQU351348
MAER449447
MAEO419665
MACE188937
MABS561007
LWEL386043
LSPH444177
LSAK314315 LSA0129
LREU557436
LPNE400673
LPNE297246
LPNE297245
LPNE272624
LMON265669
LMON169963
LMES203120
LJOH257314
LINT363253
LINT267671
LINT189518
LINN272626
LHEL405566
LGAS324831
LDEL390333
LDEL321956
LBOR355277
LBOR355276
LBIF456481
LBIF355278
LACI272621
JSP375286
ILOI283942
IHOS453591
HWAL362976
HSP64091
HSAL478009
HPYL85963
HPYL357544
HPY
HNEP81032
HMUK485914
HMOD498761
HMAR272569
HINF71421
HINF374930
HINF281310 NTHI0056
HHEP235279
HHAL349124
HDUC233412
HBUT415426
HAUR316274
HARS204773
HACI382638
GVIO251221
GURA351605
GSUL243231
GMET269799 GMET_0451
GBET391165
FTUL458234
FTUL418136
FTUL401614
FTUL393115
FTUL393011
FTUL351581
FSUC59374
FSP106370
FRANT
FPHI484022
FNUC190304
FNOD381764
FMAG334413
FALN326424
ERUM302409
ERUM254945
ELIT314225
ECHA205920
ECAN269484
DVUL882
DSP255470
DSP216389
DRED349161
DRAD243230
DPSY177439
DOLE96561
DNOD246195
DHAF138119
DETH243164
DDES207559
DARO159087
CVIO243365
CVES412965
CTRA471473
CTRA471472
CTET212717
CTEP194439
CSUL444179
CRUT413404
CPSY167879
CPRO264201
CPNE182082
CPNE138677
CPNE115713
CPNE115711
CPER289380
CPER195103
CPER195102 CPE0152
CPEL335992
CNOV386415
CMUR243161
CMIC443906 CMM_2589
CMIC31964 CMS0311
CMET456442
CMAQ397948
CKOR374847
CKLU431943 CKL_2197
CJEJ407148
CJEJ360109
CJEJ354242
CJEJ195099
CJEJ192222
CJEI306537
CHYD246194
CHUT269798
CHOM360107
CFET360106
CFEL264202
CDIP257309
CDES477974
CCUR360105
CCON360104
CCHL340177
CCAV227941
CBUR434922
CBUR360115
CBUR227377
CBOT536232
CBOT515621
CBOT508765
CBOT498213
CBOT441772
CBOT441771
CBOT441770
CBOT36826
CBLO291272
CBLO203907
CABO218497
BXEN266265
BWEI315730
BTUR314724
BTRI382640
BTHU412694
BTHU281309
BSUI470137 BSUIS_B0804
BSUI204722 BR_A0812
BSP376
BSP107806 BU571
BQUI283165
BPER257313
BPAR257311
BLON206672
BHER314723
BHEN283166
BGAR290434
BFRA295405 BF2293
BFRA272559 BF2382
BCIC186490
BCER572264
BCER405917
BCER315749
BCER288681
BCER226900
BBUR224326
BBRO257310
BBAC360095
BBAC264462
BAPH372461
BAPH198804 BUSG551
BANT592021
BANT568206
BANT261594
BANT260799
BAFZ390236
AYEL322098
AVAR240292
AURANTIMONAS
ASP76114
ASP62977 ACIAD1672
ASP62928
ASP232721
APHA212042
APER272557
AORE350688
AMAR329726
AMAR234826
ALAI441768
AFUL224325
AFER243159
AEHR187272
ADEH290397
ABUT367737 ABU_1393
ABOR393595
ABAU360910
ABAC204669 ACID345_4306
AAVE397945
AAEO224324


Organism features enriched in list (features available for 403 out of the 423 orgs in the list)
Feature    Pvalue       Num occurrences in list  Total num occurrences  
Disease:Gastroenteritis 0.0006547313
Endospores:No 0.0001101165211
GC_Content_Range4:0-40 1.826e-19193213
GC_Content_Range4:40-60 0.0000118132224
GC_Content_Range4:60-100 1.210e-677145
GC_Content_Range7:0-30 3.261e-64547
GC_Content_Range7:30-40 1.904e-12148166
GC_Content_Range7:50-60 0.000024556107
GC_Content_Range7:60-70 1.719e-768134
Genome_Size_Range5:0-2 2.369e-25152155
Genome_Size_Range5:2-4 0.0007802152197
Genome_Size_Range5:4-6 4.505e-1783184
Genome_Size_Range5:6-10 1.969e-71647
Genome_Size_Range9:0-1 0.00003542727
Genome_Size_Range9:1-2 1.335e-19125128
Genome_Size_Range9:2-3 0.000254698120
Genome_Size_Range9:4-5 3.328e-84396
Genome_Size_Range9:5-6 3.070e-74088
Genome_Size_Range9:6-8 1.316e-71138
Gram_Stain:Gram_Neg 2.946e-7203333
Habitat:Multiple 0.0019623109178
Habitat:Specialized 0.00009474853
Motility:No 0.0000402123151
Motility:Yes 0.0000781164267
Optimal_temp.:25-30 0.0005701619
Optimal_temp.:30-37 0.00966551718
Oxygen_Req:Anaerobic 8.161e-688102
Oxygen_Req:Facultative 7.848e-6116201
Oxygen_Req:Microaerophilic 0.00966551718
Pathogenic_in:Plant 0.0033830515
Shape:Coccus 0.00527106682
Shape:Irregular_coccus 0.00168851717
Shape:Rod 3.827e-16197347
Shape:Sphere 0.00078471919
Shape:Spiral 2.248e-63434
Temp._range:Mesophilic 0.0018798315473



Back to top


ORGANISMS ENRICHED FOR GROUP:

Total number of orgs: 2
Effective number of orgs (counting one per cluster within 468 clusters): 2

Organism list
Homologs in each organism in the list
Features enriched in organism list


Follow (ncbi) link, when present, to find the set of organism features for each organism
Org ID  Org Name    Pvalue       # genes in tgt genome found in org  # genes in group found in org  
RALB246199 Ruminococcus albus 8 0.00308596606
PRUM264731 ncbi Prevotella ruminicola 23 0.00629737436


Names of the homologs of the genes in the group in each of these orgs
  G81   G6816   EG20248   EG12036   EG11065   EG10616   
RALB246199 GRAORF_3160GRAORF_3304GRAORF_0353GRAORF_3304GRAORF_0353GRAORF_0353
PRUM264731 GFRORF1363GFRORF0735GFRORF0735GFRORF0735GFRORF1646GFRORF1646


Organism features enriched in list (features available for 1 out of the 2 orgs in the list)
Feature    Pvalue       Num occurrences in list  Total num occurrences  



Back to top


ORGANISMS DEPLETED FOR GROUP:




Back to top


PHYLOGENETIC PROFILE SIMILARITY WITH KNOWN PATHWAYS:

Pathways or complexes with absolute value of Pearson coefficient with respect to candidate larger than 0.4 are listed below
The candidate is assumed to exist in orgs listed in section List of organisms containing most genes from the group


Pathway or complex  # Orgs containing it  # of those orgs also containing candidate  Pearson Coeff  
XYLCAT-PWY (xylose degradation I)2171400.6301
GALACTCAT-PWY (D-galactonate degradation)104870.5800
GLUCUROCAT-PWY (β-D-glucuronide and D-glucuronate degradation)2081300.5778
ENTNER-DOUDOROFF-PWY (Entner-Doudoroff pathway I)2491380.5351
GLYCOLYSIS-E-D (superpathway of glycolysis and Entner-Doudoroff)2491380.5351
GLUCONSUPER-PWY (D-gluconate degradation)2291300.5232
PWY-6507 (5-dehydro-4-deoxy-D-glucuronate degradation)76670.5210
GALACTITOLCAT-PWY (galactitol degradation)73650.5165
PWY-1001 (cellulose biosynthesis)2161240.5105
PWY0-981 (taurine degradation IV)106790.4930
GALACT-GLUCUROCAT-PWY (superpathway of hexuronide and hexuronate degradation)150960.4788
GALACTUROCAT-PWY (D-galacturonate degradation I)1721040.4756
PWY-5148 (acyl-CoA hydrolysis)2271230.4753
3-HYDROXYPHENYLACETATE-DEGRADATION-PWY (4-hydroxyphenylacetate degradation)149930.4566
COBALSYN-PWY (adenosylcobalamin salvage from cobinamide I)1951090.4499
GLYSYN-THR-PWY (glycine biosynthesis IV)2151140.4366
CHOLINE-BETAINE-ANA-PWY (choline degradation I)135850.4348
BETSYN-PWY (glycine betaine biosynthesis I (Gram-negative bacteria))138860.4332
RHAMCAT-PWY (rhamnose degradation)91660.4316
THREONINE-DEG2-PWY (threonine degradation II)2141120.4238
PWY0-1182 (trehalose degradation II (trehalase))70550.4200
GLUTAMINDEG-PWY (glutamine degradation I)1911030.4135
PWY0-1329 (succinate to cytochrome bo oxidase electron transfer)96660.4088
KETOGLUCONMET-PWY (ketogluconate metabolism)103690.4085
ARABCAT-PWY (L-arabinose degradation I)128790.4060



Back to top


PAIRWISE GENOME CONTEXT SCORE MATRIX:

  G6816   EG20248   EG12036   EG11065   EG10616   
G810.999250.9992280.9992690.9992250.9988
G68160.9999030.9999020.999750.999757
EG202480.9998990.9997550.999756
EG120360.9997610.999744
EG110650.999695
EG10616



Back to top


PAIRWISE BLAST SCORES:

  G81   G6816   EG20248   EG12036   EG11065   EG10616   
G810.0f0-----
G6816-0.0f0003.3e-237.6e-16
EG20248-00.0f002.5e-191.1e-14
EG12036-000.0f01.6e-184.9e-17
EG11065-3.3e-232.5e-191.6e-180.0f04.3e-4
EG10616-7.6e-161.1e-144.9e-17-0.0f0



Back to top


PATHWAYS OR PROTEIN COMPLEX MATCHES IN TARGET ORG:

For each case, all genes involved in the pathway or complex are listed. For each gene we list: a tag indicating whether the gene is part of the candidate list or not, the average and the minimum scores of the gene to the candidate list, the gene name, and its product names.

- GALACT-GLUCUROCAT-PWY (superpathway of hexuronide and hexuronate degradation) (degree of match pw to cand: 0.429, degree of match cand to pw: 0.500, average score: 0.943)
  Genes in pathway or complex:
   *in cand* 0.9997 0.9992 EG11065 (uxaB) ALTRO-OXIDOREDUCT-MONOMER (altronate oxidoreductase)
             0.9986 0.9976 EG12734 (uxaA) ALTRODEHYDRAT-MONOMER (D-altronate dehydratase)
             0.9645 0.8801 EG11055 (uidA) BETA-GLUCURONID-MONOMER (β-D-glucuronidase)
   *in cand* 0.9993 0.9988 G81 (uxaC) UXAC-MONOMER (D-glucuronate isomerase / D-galacturonate isomerase)
   *in cand* 0.9998 0.9992 EG20248 (uxuB) MANNONOXIDOREDUCT-MONOMER (D-mannonate oxidoreductase)
             0.9966 0.9957 EG12253 (kdgK) DEOXYGLUCONOKIN-MONOMER (2-keto-3-deoxygluconokinase)
             0.9981 0.9951 EG11066 (uxuA) MANNONDEHYDRAT-MONOMER (D-mannonate dehydratase)
  Genes in candidate but not in this pathway or complex:
   *in cand* 0.9996 0.9988 EG10616 (mtlD) MANNPDEHYDROG-MONOMER (mannitol-1-phosphate 5-dehydrogenase)
   *in cand* 0.9998 0.9993 EG12036 (yeiQ) EG12036-MONOMER (predicted dehydrogenase, NAD-dependent)
   *in cand* 0.9998 0.9992 G6816 (ydfI) G6816-MONOMER (predicted mannonate dehydrogenase)

- GALACTUROCAT-PWY (D-galacturonate degradation I) (degree of match pw to cand: 0.500, degree of match cand to pw: 0.333, average score: 0.996)
  Genes in pathway or complex:
             0.9986 0.9976 EG12734 (uxaA) ALTRODEHYDRAT-MONOMER (D-altronate dehydratase)
             0.9966 0.9957 EG12253 (kdgK) DEOXYGLUCONOKIN-MONOMER (2-keto-3-deoxygluconokinase)
   *in cand* 0.9997 0.9992 EG11065 (uxaB) ALTRO-OXIDOREDUCT-MONOMER (altronate oxidoreductase)
   *in cand* 0.9993 0.9988 G81 (uxaC) UXAC-MONOMER (D-glucuronate isomerase / D-galacturonate isomerase)
  Genes in candidate but not in this pathway or complex:
   *in cand* 0.9996 0.9988 EG10616 (mtlD) MANNPDEHYDROG-MONOMER (mannitol-1-phosphate 5-dehydrogenase)
   *in cand* 0.9998 0.9993 EG12036 (yeiQ) EG12036-MONOMER (predicted dehydrogenase, NAD-dependent)
   *in cand* 0.9998 0.9992 EG20248 (uxuB) MANNONOXIDOREDUCT-MONOMER (D-mannonate oxidoreductase)
   *in cand* 0.9998 0.9992 G6816 (ydfI) G6816-MONOMER (predicted mannonate dehydrogenase)

- GLUCUROCAT-PWY (β-D-glucuronide and D-glucuronate degradation) (degree of match pw to cand: 0.400, degree of match cand to pw: 0.333, average score: 0.944)
  Genes in pathway or complex:
             0.9981 0.9951 EG11066 (uxuA) MANNONDEHYDRAT-MONOMER (D-mannonate dehydratase)
             0.9966 0.9957 EG12253 (kdgK) DEOXYGLUCONOKIN-MONOMER (2-keto-3-deoxygluconokinase)
   *in cand* 0.9998 0.9992 EG20248 (uxuB) MANNONOXIDOREDUCT-MONOMER (D-mannonate oxidoreductase)
   *in cand* 0.9993 0.9988 G81 (uxaC) UXAC-MONOMER (D-glucuronate isomerase / D-galacturonate isomerase)
             0.9645 0.8801 EG11055 (uidA) BETA-GLUCURONID-MONOMER (β-D-glucuronidase)
  Genes in candidate but not in this pathway or complex:
   *in cand* 0.9996 0.9988 EG10616 (mtlD) MANNPDEHYDROG-MONOMER (mannitol-1-phosphate 5-dehydrogenase)
   *in cand* 0.9997 0.9992 EG11065 (uxaB) ALTRO-OXIDOREDUCT-MONOMER (altronate oxidoreductase)
   *in cand* 0.9998 0.9993 EG12036 (yeiQ) EG12036-MONOMER (predicted dehydrogenase, NAD-dependent)
   *in cand* 0.9998 0.9992 G6816 (ydfI) G6816-MONOMER (predicted mannonate dehydrogenase)



Back to top


GENOME CONTEXT INFORMATION:

Each row corresponds to a replicon in an organism, each column to a gene in the candidate. The second column indicates whether the organims was included in the list used to compute the genome context scores or not. Some organisms are not included because they are phylogenetically too similar to others already in the list.
The number in the matrix indicate the position of the homolog of the gene in the replicon. All numbers are relative to the smaller one, which is assigned a position of zero. Two columns with the same number indicate that the two genes matched the same gene in that organism.

Genome browser links for gene clusters

The links below opens a genome browser BioCyc page for each cluster of genes in the target genome. These pages shows the central gene of the cluster in the target genome and its best homolog in the reference genomes, for the genomes that contain homologs for at least 75% of the genes in the group. Only one genome per phylogenetic cluster of organisms is shown, to keep the list smaller.

G81 (centered at G81)
G6816 (centered at G6816)
EG20248 (centered at EG20248)
EG12036 (centered at EG12036)
EG11065 (centered at EG11065)
EG10616 (centered at EG10616)


ORG:REPLICON:CIRC?\GENE  IN REF LIST  G81   G6816   EG20248   EG12036   EG11065   EG10616   
140/623187/623189/623186/623175/623228/623
AAUR290340:2:Tyes011113260
ABAC204669:0:Tyes0-----
ABUT367737:0:Tyes-----0
ACAU438753:0:Tyes055555
ACEL351607:0:Tyes-00000
ACRY349163:8:Tyes-0000-
AHYD196024:0:Tyes-000-0
AMET293826:0:Tyes7227240000
ANAE240017:0:Tyes-00000
APLE416269:0:Tyes0-640--640
APLE434271:0:Tno0----661
ASAL382245:5:Tyes-000-0
ASP1667:3:Tyes011113537
ASP62977:0:Tyes-----0
BABO262698:0:Tno-00000
BAMB339670:2:Tno-000-0
BAMB339670:3:Tno----0-
BAMB398577:2:Tno-000-0
BAMB398577:3:Tno----0-
BAMY326423:0:Tyes8128158158158150
BAPH198804:0:Tyes-----0
BCAN483179:0:Tno100000
BCEN331271:0:Tno----0-
BCEN331271:1:Tno-000-0
BCEN331272:1:Tyes----0-
BCEN331272:2:Tyes-000-0
BCLA66692:0:Tyes5630720002523
BFRA272559:1:Tyes0-----
BFRA295405:0:Tno0-----
BHAL272558:0:Tyes23400003418
BJAP224911:0:Fyes-00000
BLIC279010:0:Tyes292529222922292229220
BMAL243160:0:Tno-000-0
BMAL243160:1:Tno----0-
BMAL320388:0:Tno-000-0
BMAL320388:1:Tno----0-
BMAL320389:0:Tyes-000-0
BMAL320389:1:Tyes----0-
BMEL224914:0:Tno022222
BMEL359391:0:Tno-00000
BOVI236:0:Tyes-00000
BPET94624:0:Tyes-00000
BPSE272560:0:Tyes-000-0
BPSE272560:1:Tyes----0-
BPSE320372:0:Tno-00000
BPSE320373:0:Tno-00000
BPUM315750:0:Tyes264626442644264426440
BSP107806:2:Tyes-----0
BSP36773:2:Tyes-000-0
BSUB:0:Tyes8888968968968960
BSUI204722:0:Tyes0-----
BSUI470137:0:Tno0-----
BTHA271848:1:Tno-00000
BTHE226186:0:Tyes02222-
BVIE269482:7:Tyes-00000
CACE272562:1:Tyes5495525525525520
CAULO:0:Tyes300000
CBEI290402:0:Tyes433215691574157415740
CDIF272563:1:Tyes-0-000
CEFF196164:0:Fyes011111
CGLU196627:0:Tyes236600000
CJAP155077:0:Tyes253200000
CKLU431943:1:Tyes-----0
CMIC31964:2:Tyes-----0
CMIC443906:2:Tyes-----0
CPER195102:1:Tyes0-----
CPHY357809:0:Tyes166500016631663
CSAL290398:0:Tyes-00000
CSP501479:4:Fyes-00000
CSP78:2:Tyes300000
DGEO319795:0:Tyes-00000
DSHI398580:5:Tyes-000-0
ECAR218491:0:Tyes56484384384343650
ECOL199310:0:Tno185833883388338802416
ECOL316407:0:Tno156227812781278102144
ECOL331111:6:Tno176628282802291
ECOL362663:0:Tno168331393139313902193
ECOL364106:1:Tno178732603260326002388
ECOL405955:2:Tyes169264264264202176
ECOL409438:6:Tyes179630613061306102311
ECOL413997:0:Tno149827492749274901997
ECOL439855:4:Tno1708000282244
ECOL469008:0:Tno52119731973197319970
ECOL481805:0:Tno50020103643201020310
ECOL585034:0:Tno167829362936293602200
ECOL585035:0:Tno182732123212321202340
ECOL585055:0:Tno182032603260326002364
ECOL585056:2:Tno178472472472402318
ECOL585057:0:Tno180230023002300202323
ECOL585397:0:Tno205493393393302559
ECOL83334:0:Tno189623232302409
ECOLI:0:Tno160623285267002118
ECOO157:0:Tno209034153415341502620
EFAE226185:3:Tyes-0--00
EFER585054:1:Tyes280114811481148102038
ESP42895:1:Tyes344818251825182519030
FJOH376686:0:Tyes300000
FSP1855:0:Tyes011111
GFOR411154:0:Tyes-00000
GKAU235909:1:Tyes-000-0
GMET269799:1:Tyes0-----
GOXY290633:5:Tyes-5775775770577
GTHE420246:1:Tyes0757575-75
HCHE349521:0:Tyes-00000
HINF281310:0:Tyes0-----
HSOM205914:1:Tyes34400--0
HSOM228400:0:Tno0425425--425
JSP290400:1:Tyes-000-0
KPNE272620:2:Tyes94700022461380
KRAD266940:2:Fyes0429449074
LBRE387344:2:Tyes0444--
LCAS321967:1:Tyes-00000
LCHO395495:0:Tyes-766766000
LLAC272622:5:Tyes161116151615161516150
LLAC272623:0:Tyes1604160816081608-0
LPLA220668:0:Tyes-000-0
LSAK314315:0:Tyes0-----
LXYL281090:0:Tyes1360----0
MAVI243243:0:Tyes-20374037400
MCAP340047:0:Tyes-----0
MFLA265072:0:Tyes-----0
MHYO262719:0:Tyes-----0
MHYO262722:0:Tno-----0
MHYO295358:0:Tno-----0
MLOT266835:2:Tyes167900234200
MMAR394221:0:Tyes700000
MMYC272632:0:Tyes-----0
MPNE272634:0:Tyes-----0
MPUL272635:0:Tyes-----0
MSME246196:0:Tyes-02644026440
MSP164756:1:Tno-00000
MSP164757:0:Tno-00000
MSP189918:2:Tyes-00000
MSP266779:1:Tyes011111
MSP400668:0:Tyes100000
MSUC221988:0:Tyes1511361361361360
MTHE264732:0:Tyes-0000-
OANT439375:4:Tyes-245245058245
OIHE221109:0:Tyes02279--22792279
PACN267747:0:Tyes1000--
PAER208963:0:Tyes-00000
PAER208964:0:Tno-00000
PATL342610:0:Tyes-000562898
PDIS435591:0:Tyes0-----
PENT384676:0:Tyes-00000
PFLU205922:0:Tyes-00000
PFLU216595:1:Tyes-00000
PFLU220664:0:Tyes-00000
PHAL326442:0:Tyes-00000
PING357804:0:Tyes39404040400
PLUM243265:0:Fyes100000
PMEN399739:0:Tyes-00000
PMOB403833:0:Tyes0-----
PMUL272843:1:Tyes-00--0
PNAP365044:8:Tyes--0000
PPRO298386:1:Tyes115215171517151711530
PPUT160488:0:Tno-----0
PPUT351746:0:Tyes-----0
PPUT76869:0:Tno-----0
PRUM264731:0:Tyes609000887887
PSP117:0:Tyes-00000
PSP296591:2:Tyes-00000
PSTU379731:0:Tyes-00000
PSYR205918:0:Tyes-00000
PSYR223283:2:Tyes-00000
RALB246199:0:Tyes280029440294400
RDEN375451:4:Tyes100000
RETL347834:5:Tyes100035580
REUT381666:2:Tyes-000-0
RLEG216596:6:Tyes100041280
RPOM246200:1:Tyes-00000
RSAL288705:0:Tyes200000
RSOL267608:1:Tyes-000-0
RSP101510:3:Fyes-00000
RSPH272943:4:Tyes700000
RSPH349101:2:Tno700000
RSPH349102:5:Tyes700000
SAGA205921:0:Tno0-----
SAGA208435:0:Tno0-----
SAGA211110:0:Tyes0-----
SALA317655:1:Tyes011111
SAUR158878:1:Tno-----0
SAUR158879:1:Tno-----0
SAUR196620:0:Tno-----0
SAUR273036:0:Tno-----0
SAUR282458:0:Tno-----0
SAUR282459:0:Tno-----0
SAUR359786:1:Tno-----0
SAUR359787:1:Tno-----0
SAUR367830:3:Tno-----0
SAUR418127:0:Tyes-----0
SAUR426430:0:Tno-----0
SAUR93061:0:Fno-----0
SAUR93062:1:Tno-----0
SBOY300268:1:Tyes126726202620262001888
SDEG203122:0:Tyes33500000
SDYS300267:1:Tyes-00000
SENT209261:0:Tno10000747
SENT220341:0:Tno159600015952340
SENT295319:0:Tno10000515
SENT321314:2:Tno10000539
SENT454169:2:Tno10000607
SERY405948:0:Tyes109000108108
SFLE198214:0:Tyes148925412541254101976
SFLE373384:0:Tno147124892489248902241
SGLO343509:3:Tyes-187418741874-0
SHAE279808:0:Tyes2474---00
SHIGELLA:0:Tno140656056056002137
SLAC55218:0:Fyes-000-0
SMED366394:2:Tyes49600000
SMEL266834:1:Tyes0512512512512512
SMUT210007:0:Tyes---0-0
SPNE1313:0:Tyes----00
SPNE170187:0:Tyes-----0
SPNE171101:0:Tno-----0
SPNE487214:0:Tno----00
SPNE488221:0:Tno1636----0
SPRO399741:1:Tyes432332243224322435590
SPYO370552:0:Tno0-----
SSAP342451:2:Tyes---000
SSON300269:1:Tyes155558558558502088
SSP292414:0:Tyes0111-1
SSP292414:2:Tyes----0-
SSP644076:1:Fyes0----1
SSP644076:7:Fyes-0000-
SSUI391295:0:Tyes0-----
SSUI391296:0:Tyes0-----
STYP99287:1:Tyes162100016202166
TLET416591:0:Tyes0-----
TMAR243274:0:Tyes044444
TPET390874:0:Tno400000
TPSE340099:0:Tyes-00000
TSP1755:0:Tyes-00000
TSP28240:0:Tyes400000
TTEN273068:0:Tyes151901520152000
TTUR377629:0:Tyes011111
VCHO:1:Fyes--0--0
VCHO345073:0:Tno--0--0
VEIS391735:1:Tyes-00000
VPAR223926:0:Tyes10000-
VPAR223926:1:Tyes-----0
VVUL196600:1:Tyes10000-
VVUL196600:2:Tyes-----0
VVUL216895:0:Tno10000-
VVUL216895:1:Tno-----0
XAUT78245:1:Tyes--0000
XAXO190486:0:Tyes1900000
XCAM190485:0:Tyes1000000
XCAM314565:0:Tno1100000
XCAM316273:0:Tno1100000
XCAM487884:0:Tno1700000
XORY291331:0:Tno300000
XORY342109:0:Tyes300000
XORY360094:0:Tno077777
YENT393305:1:Tyes218900021882625
YPES187410:5:Tno7130007121202
YPES214092:3:Tno067767767713360
YPES349746:2:Tno139439439402609
YPES360102:3:Tyes224000022382043
YPES377628:2:Tno022842284228413327
YPES386656:2:Tno3362380238023803370
YPSE273123:2:Tno215500021542598
YPSE349747:2:Tno021872187218713594
ZMOB264203:0:Tyes-00000



Back to top