CANDIDATE ID: 417

CANDIDATE ID: 417

NUMBER OF GENES: 6
AVERAGE SCORE:    9.9948240e-1 (range=[0.0,1.0])
AVERAGE MINIMUM BLAST P-VAL:    1.0000000e+0

Gene List
List of organisms containing most genes from the group
    Phylogenetic tree highlighting these organisms (opens new page)
List of organisms containing very few or no genes from the group
List of organisms enriched for group
List of organisms depleted for group
Phylogenetic profile similarity with known pathways
Pairwise genome context scores
Pairwise Blast scores
Pathway or protein complex matches in target organism
Genome context matrix
    Genes and their orthologs in genome browser BioCyc pages



GENE LIST:

- EG12438 (menH) (b2263)
   Products of gene:
     - EG12438-MONOMER ((1R,6R)-2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase)
       Reactions:
        2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate  ->  (1R,6R)-6-hydroxy-2-succinylcyclohexa-2,4-diene-1-carboxylate + pyruvate + H+
         In pathways
         PWY-5850 (PWY-5850)
         PWY-5840 (PWY-5840)
         PWY-5845 (PWY-5845)
         PWY-5860 (PWY-5860)
         PWY-5862 (PWY-5862)
         PWY-5838 (superpathway of menaquinone-8 biosynthesis I)
         PWY-5896 (PWY-5896)
         PWY-5897 (PWY-5897)
         PWY-5898 (PWY-5898)
         PWY-5899 (PWY-5899)
         ALL-CHORISMATE-PWY (superpathway of chorismate)
         PWY-5861 (PWY-5861)
         PWY-5863 (PWY-5863)
         PWY-5837 (1,4-dihydroxy-2-naphthoate biosynthesis I)
         PWY-5791 (PWY-5791)

- EG12437 (menE) (b2260)
   Products of gene:
     - O-SUCCINYLBENZOATE-COA-LIG-MONOMER (MenE)
     - MENE-CPLX (o-succinylbenzoate-CoA ligase)
       Reactions:
        ATP + o-succinylbenzoate + coenzyme A  ->  AMP + diphosphate + o-succinylbenzoyl-CoA + H+
         In pathways
         PWY-5850 (PWY-5850)
         PWY-5840 (PWY-5840)
         PWY-5845 (PWY-5845)
         PWY-5860 (PWY-5860)
         PWY-5862 (PWY-5862)
         PWY-5838 (superpathway of menaquinone-8 biosynthesis I)
         PWY-5896 (PWY-5896)
         PWY-5897 (PWY-5897)
         PWY-5898 (PWY-5898)
         PWY-5899 (PWY-5899)
         ALL-CHORISMATE-PWY (superpathway of chorismate)
         PWY-5861 (PWY-5861)
         PWY-5837 (1,4-dihydroxy-2-naphthoate biosynthesis I)

- EG12362 (menF) (b2265)
   Products of gene:
     - MENF-MONOMER (MenF)
     - MENF-CPLX (isochorismate synthase 2)
       Reactions:
        chorismate  =  isochorismate
         In pathways
         PWY-5850 (PWY-5850)
         PWY-5840 (PWY-5840)
         PWY-5845 (PWY-5845)
         PWY-5860 (PWY-5860)
         PWY-5862 (PWY-5862)
         PWY-5838 (superpathway of menaquinone-8 biosynthesis I)
         PWY-5896 (PWY-5896)
         PWY-5897 (PWY-5897)
         PWY-5898 (PWY-5898)
         PWY-5899 (PWY-5899)
         ALL-CHORISMATE-PWY (superpathway of chorismate)
         PWY-5861 (PWY-5861)
         PWY-5863 (PWY-5863)
         PWY-6374 (PWY-6374)
         PWY-5903 (PWY-5903)
         ENTBACSYN-PWY (enterobactin biosynthesis)
         PWY-5837 (1,4-dihydroxy-2-naphthoate biosynthesis I)
         PWY-5791 (PWY-5791)
         PWY-5901 (2,3-dihydroxybenzoate biosynthesis)
         PWY-6406 (PWY-6406)

- EG11532 (menC) (b2261)
   Products of gene:
     - O-SUCCINYLBENZOATE-COA-SYN-MONOMER (o-succinylbenzoate synthase)
       Reactions:
        (1R,6R)-6-hydroxy-2-succinylcyclohexa-2,4-diene-1-carboxylate  ->  o-succinylbenzoate + H2O
         In pathways
         PWY-5850 (PWY-5850)
         PWY-5840 (PWY-5840)
         PWY-5845 (PWY-5845)
         PWY-5860 (PWY-5860)
         PWY-5862 (PWY-5862)
         PWY-5838 (superpathway of menaquinone-8 biosynthesis I)
         PWY-5896 (PWY-5896)
         PWY-5897 (PWY-5897)
         PWY-5898 (PWY-5898)
         PWY-5899 (PWY-5899)
         ALL-CHORISMATE-PWY (superpathway of chorismate)
         PWY-5861 (PWY-5861)
         PWY-5863 (PWY-5863)
         PWY-5837 (1,4-dihydroxy-2-naphthoate biosynthesis I)
         PWY-5791 (PWY-5791)

- EG11368 (menB) (b2262)
   Products of gene:
     - NAPHTHOATE-SYN-MONOMER (MenB)
     - CPLX0-7882 (1,4-dihydroxy-2-naphthoyl-CoA synthase)
       Reactions:
        o-succinylbenzoyl-CoA + H+  ->  1,4-dihydroxy-2-naphthoyl-CoA + H2O
         In pathways
         PWY-5850 (PWY-5850)
         PWY-5840 (PWY-5840)
         PWY-5845 (PWY-5845)
         PWY-5860 (PWY-5860)
         PWY-5862 (PWY-5862)
         PWY-5838 (superpathway of menaquinone-8 biosynthesis I)
         PWY-5896 (PWY-5896)
         PWY-5897 (PWY-5897)
         PWY-5898 (PWY-5898)
         PWY-5899 (PWY-5899)
         ALL-CHORISMATE-PWY (superpathway of chorismate)
         PWY-5861 (PWY-5861)
         PWY-5863 (PWY-5863)
         PWY-5837 (1,4-dihydroxy-2-naphthoate biosynthesis I)
         PWY-5791 (PWY-5791)

- EG10579 (menD) (b2264)
   Products of gene:
     - MEND-MONOMER (MenD)
     - CPLX0-7525 (2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate synthase)
       Reactions:
        2-oxoglutarate + isochorismate + 2 H+  ->  2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate + CO2
         In pathways
         PWY-5850 (PWY-5850)
         PWY-5840 (PWY-5840)
         PWY-5845 (PWY-5845)
         PWY-5860 (PWY-5860)
         PWY-5862 (PWY-5862)
         PWY-5838 (superpathway of menaquinone-8 biosynthesis I)
         PWY-5896 (PWY-5896)
         PWY-5897 (PWY-5897)
         PWY-5898 (PWY-5898)
         PWY-5899 (PWY-5899)
         ALL-CHORISMATE-PWY (superpathway of chorismate)
         PWY-5861 (PWY-5861)
         PWY-5863 (PWY-5863)
         PWY-5837 (1,4-dihydroxy-2-naphthoate biosynthesis I)
         PWY-5791 (PWY-5791)



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ORGANISMS CONTAINING AT LEAST 5 GENES FROM THE GROUP:

Total number of orgs: 144
Effective number of orgs (counting one per cluster within 468 clusters): 96

Organism list
Homologs in each organism in the list
Features enriched in organism list


Follow (ncbi) link, when present, to find the set of organism features for each organism
Org ID  Org Name  # genes in group found in org  
YPSE349747 ncbi Yersinia pseudotuberculosis IP 317586
YPSE273123 ncbi Yersinia pseudotuberculosis IP 329536
YPES386656 ncbi Yersinia pestis Pestoides F6
YPES377628 ncbi Yersinia pestis Nepal5166
YPES360102 ncbi Yersinia pestis Antiqua6
YPES349746 ncbi Yersinia pestis Angola6
YPES214092 ncbi Yersinia pestis CO926
YPES187410 ncbi Yersinia pestis KIM 106
YENT393305 ncbi Yersinia enterocolitica enterocolitica 80816
VVUL216895 ncbi Vibrio vulnificus CMCP66
VVUL196600 ncbi Vibrio vulnificus YJ0166
VPAR223926 ncbi Vibrio parahaemolyticus RIMD 22106336
VFIS312309 ncbi Vibrio fischeri ES1146
VCHO345073 ncbi Vibrio cholerae O3956
VCHO ncbi Vibrio cholerae O1 biovar El Tor str. N169616
TTUR377629 ncbi Teredinibacter turnerae T79016
TROS309801 ncbi Thermomicrobium roseum DSM 51596
TFUS269800 ncbi Thermobifida fusca YX5
TELO197221 ncbi Thermosynechococcus elongatus BP-15
STYP99287 ncbi Salmonella enterica enterica serovar Typhimurium str. LT26
SSP94122 ncbi Shewanella sp. ANA-36
SSP84588 ncbi Synechococcus sp. WH 81025
SSP321327 ncbi Synechococcus sp. JA-3-3Ab5
SSP1131 Synechococcus sp. CC96055
SSON300269 ncbi Shigella sonnei Ss0466
SSED425104 ncbi Shewanella sediminis HAW-EB36
SRUB309807 ncbi Salinibacter ruber DSM 138555
SPRO399741 ncbi Serratia proteamaculans 5686
SPEA398579 ncbi Shewanella pealeana ATCC 7003456
SONE211586 ncbi Shewanella oneidensis MR-16
SLOI323850 ncbi Shewanella loihica PV-46
SHIGELLA ncbi Shigella flexneri 2a str. 2457T6
SHAL458817 ncbi Shewanella halifaxensis HAW-EB46
SFLE373384 ncbi Shigella flexneri 5 str. 84016
SFLE198214 ncbi Shigella flexneri 2a str. 3016
SERY405948 ncbi Saccharopolyspora erythraea NRRL 23386
SENT454169 ncbi Salmonella enterica enterica serovar Heidelberg str. SL4766
SENT321314 ncbi Salmonella enterica enterica serovar Choleraesuis str. SC-B676
SENT295319 ncbi Salmonella enterica enterica serovar Paratyphi A str. ATCC 91506
SENT220341 ncbi Salmonella enterica enterica serovar Typhi str. CT186
SENT209261 ncbi Salmonella enterica enterica serovar Typhi str. Ty26
SELO269084 ncbi Synechococcus elongatus PCC 63016
SDYS300267 ncbi Shigella dysenteriae Sd1976
SBOY300268 ncbi Shigella boydii Sb2276
SBAL402882 ncbi Shewanella baltica OS1856
SBAL399599 ncbi Shewanella baltica OS1956
SACI56780 ncbi Syntrophus aciditrophicus SB6
RXYL266117 ncbi Rubrobacter xylanophilus DSM 99416
RSP357808 ncbi Roseiflexus sp. RS-15
RSP101510 ncbi Rhodococcus jostii RHA15
RSAL288705 ncbi Renibacterium salmoninarum ATCC 332095
RCAS383372 ncbi Roseiflexus castenholzii DSM 139415
PPRO298386 ncbi Photobacterium profundum SS95
PMUL272843 ncbi Pasteurella multocida multocida Pm706
PMAR59920 ncbi Prochlorococcus marinus NATL2A5
PMAR167555 ncbi Prochlorococcus marinus NATL1A5
PLUT319225 ncbi Chlorobium luteolum DSM 2736
PLUM243265 ncbi Photorhabdus luminescens laumondii TTO16
PING357804 ncbi Psychromonas ingrahamii 376
OIHE221109 ncbi Oceanobacillus iheyensis HTE8315
NSP35761 Nocardioides sp.6
NSP103690 ncbi Nostoc sp. PCC 71205
NPHA348780 ncbi Natronomonas pharaonis DSM 21605
NFAR247156 ncbi Nocardia farcinica IFM 101525
MXAN246197 ncbi Myxococcus xanthus DK 16226
MSUC221988 ncbi Mannheimia succiniciproducens MBEL55E6
MGIL350054 ncbi Mycobacterium gilvum PYR-GCK5
MAER449447 ncbi Microcystis aeruginosa NIES-8436
MABS561007 ncbi Mycobacterium abscessus ATCC 199775
LXYL281090 ncbi Leifsonia xyli xyli CTCB075
LWEL386043 ncbi Listeria welshimeri serovar 6b str. SLCC53345
LSPH444177 ncbi Lysinibacillus sphaericus C3-415
LMON265669 ncbi Listeria monocytogenes 4b F23655
LMON169963 ncbi Listeria monocytogenes EGD-e5
LLAC272623 ncbi Lactococcus lactis lactis Il14035
LLAC272622 ncbi Lactococcus lactis cremoris SK115
LINN272626 ncbi Listeria innocua Clip112625
KRAD266940 ncbi Kineococcus radiotolerans SRS302165
KPNE272620 ncbi Klebsiella pneumoniae pneumoniae MGH 785786
HSOM228400 ncbi Haemophilus somnus 23366
HSOM205914 ncbi Haemophilus somnus 129PT6
HMUK485914 ncbi Halomicrobium mukohataei DSM 122865
HMAR272569 ncbi Haloarcula marismortui ATCC 430495
HINF71421 ncbi Haemophilus influenzae Rd KW206
HINF374930 ncbi Haemophilus influenzae PittEE6
HINF281310 ncbi Haemophilus influenzae 86-028NP6
HHAL349124 ncbi Halorhodospira halophila SL16
HDUC233412 ncbi Haemophilus ducreyi 35000HP6
GTHE420246 ncbi Geobacillus thermodenitrificans NG80-26
GKAU235909 ncbi Geobacillus kaustophilus HTA4265
ESP42895 Enterobacter sp.6
EFER585054 ncbi Escherichia fergusonii ATCC 354696
EFAE226185 ncbi Enterococcus faecalis V5835
ECOO157 ncbi Escherichia coli O157:H7 EDL9336
ECOL83334 Escherichia coli O157:H76
ECOL585397 ncbi Escherichia coli ED1a6
ECOL585057 ncbi Escherichia coli IAI396
ECOL585056 ncbi Escherichia coli UMN0266
ECOL585055 ncbi Escherichia coli 559896
ECOL585035 ncbi Escherichia coli S886
ECOL585034 ncbi Escherichia coli IAI16
ECOL481805 ncbi Escherichia coli ATCC 87396
ECOL469008 ncbi Escherichia coli BL21(DE3)6
ECOL439855 ncbi Escherichia coli SMS-3-56
ECOL413997 ncbi Escherichia coli B str. REL6066
ECOL409438 ncbi Escherichia coli SE116
ECOL405955 ncbi Escherichia coli APEC O16
ECOL364106 ncbi Escherichia coli UTI896
ECOL362663 ncbi Escherichia coli 5366
ECOL331111 ncbi Escherichia coli E24377A6
ECOL316407 ncbi Escherichia coli K-12 substr. W31106
ECOL199310 ncbi Escherichia coli CFT0736
ECAR218491 ncbi Pectobacterium atrosepticum SCRI10436
DHAF138119 ncbi Desulfitobacterium hafniense Y515
DARO159087 ncbi Dechloromonas aromatica RCB5
CTEP194439 ncbi Chlorobium tepidum TLS6
CMIC443906 ncbi Clavibacter michiganensis michiganensis NCPPB 3825
CMIC31964 ncbi Clavibacter michiganensis sepedonicus5
CGLU196627 ncbi Corynebacterium glutamicum ATCC 130325
CEFF196164 ncbi Corynebacterium efficiens YS-3145
CDIP257309 ncbi Corynebacterium diphtheriae NCTC 131295
CCHL340177 ncbi Chlorobium chlorochromatii CaD36
BWEI315730 ncbi Bacillus weihenstephanensis KBAB45
BTHU412694 ncbi Bacillus thuringiensis Al Hakam6
BTHU281309 ncbi Bacillus thuringiensis serovar konkukian str. 97-276
BSUB ncbi Bacillus subtilis subtilis 1685
BPUM315750 ncbi Bacillus pumilus SAFR-0325
BLIC279010 ncbi Bacillus licheniformis ATCC 145805
BCER572264 ncbi Bacillus cereus 03BB1026
BCER405917 Bacillus cereus W5
BCER315749 ncbi Bacillus cytotoxicus NVH 391-986
BCER288681 ncbi Bacillus cereus E33L6
BCER226900 ncbi Bacillus cereus ATCC 145795
BBAC264462 ncbi Bdellovibrio bacteriovorus HD1005
BANT592021 ncbi Bacillus anthracis A02485
BANT568206 ncbi Bacillus anthracis CDC 6845
BANT261594 ncbi Bacillus anthracis Ames Ancestor5
BANT260799 ncbi Bacillus anthracis Sterne5
AVAR240292 ncbi Anabaena variabilis ATCC 294136
ASAL382245 ncbi Aeromonas salmonicida salmonicida A4496
APLE434271 ncbi Actinobacillus pleuropneumoniae serovar 3 str. JL036
APLE416269 ncbi Actinobacillus pleuropneumoniae L206
AMAR329726 ncbi Acaryochloris marina MBIC110175
AHYD196024 Aeromonas hydrophila dhakensis6


Names of the homologs of the genes in the group in each of these orgs
  EG12438   EG12437   EG12362   EG11532   EG11368   EG10579   
YPSE349747 YPSIP31758_1483YPSIP31758_1486YPSIP31758_1481YPSIP31758_1485YPSIP31758_1484YPSIP31758_1482
YPSE273123 YPTB2559YPTB2556YPTB2561YPTB2557YPTB2558YPTB2560
YPES386656 YPDSF_1936YPDSF_1933YPDSF_1938YPDSF_1934YPDSF_1935YPDSF_1937
YPES377628 YPN_2121YPN_2118YPN_2123YPN_2119YPN_2120YPN_2122
YPES360102 YPA_2018YPA_2015YPA_2020YPA_2016YPA_2017YPA_2019
YPES349746 YPANGOLA_A1784YPANGOLA_A1781YPANGOLA_A1786YPANGOLA_A1782YPANGOLA_A1783YPANGOLA_A1785
YPES214092 YPO2526YPO2523YPO2528YPO2524YPO2525YPO2527
YPES187410 Y1661Y1664Y1659Y1663Y1662Y1660
YENT393305 YE1376YE1379YE1373YE1378YE1377YE1375
VVUL216895 VV1_3171VV1_3168VV1_3173VV1_3169VV1_3170VV1_3172
VVUL196600 VV1117VV1120VV1115VV1119VV1118VV1116
VPAR223926 VP0930VP0933VP0928VP0932VP0931VP0929
VFIS312309 VF1670VF1666VF1672VF1667VF1669VF1671
VCHO345073 VC0395_A1560VC0395_A1557VC0395_A1562VC0395_A1558VC0395_A1559VC0395_A1561
VCHO VC1974VC1971VC1976VC1972VC1973VC1975
TTUR377629 TERTU_2727TERTU_2724TERTU_2729TERTU_2725TERTU_2726TERTU_2728
TROS309801 TRD_A0259TRD_A0308TRD_A0262TRD_A0306TRD_A0304TRD_A0261
TFUS269800 TFU_1408TFU_1872TFU_1410TFU_1409TFU_1411
TELO197221 TLL1221TLL1213TLR1174TLL2458TLL0130
STYP99287 STM2308STM2305STM2310STM2306STM2307STM2309
SSP94122 SHEWANA3_3966SHEWANA3_3968SHEWANA3_4071SHEWANA3_3967SHEWANA3_4123SHEWANA3_3965
SSP84588 SYNW2305OR2556SYNW2308OR0956SYNW2306OR2555SYNW0998OR0030SYNW0997OR0029
SSP321327 CYA_2666CYA_2455CYA_1249CYA_0530CYA_0082
SSP1131 SYNCC9605_2436SYNCC9605_2439SYNCC9605_2437SYNCC9605_1123SYNCC9605_1122
SSON300269 SSO_2324SSO_2321SSO_2326SSO_2322SSO_2323SSO_2325
SSED425104 SSED_0225SSED_0223SSED_0130SSED_0224SSED_4478SSED_0226
SRUB309807 SRU_1355SRU_1350SRU_1354SRU_2766SRU_1351
SPRO399741 SPRO_3282SPRO_3279SPRO_3284SPRO_3280SPRO_3281SPRO_3283
SPEA398579 SPEA_3972SPEA_3974SPEA_4089SPEA_3973SPEA_4225SPEA_3971
SONE211586 SO_4574SO_4576SO_4713SO_4575SO_4739SO_4573
SLOI323850 SHEW_3600SHEW_3602SHEW_3677SHEW_3601SHEW_3814SHEW_3599
SHIGELLA YFBBMENEMENFMENCMENBMEND
SHAL458817 SHAL_0296SHAL_0294SHAL_0155SHAL_0295SHAL_4273SHAL_0297
SFLE373384 SFV_2334SFV_2331SFV_2336SFV_2332SFV_2333SFV_2335
SFLE198214 AAN43856.1AAN43853.1AAN43858.1AAN43854.1AAN43855.1AAN43857.1
SERY405948 SACE_4756SACE_6916SACE_6911SACE_0541SACE_6914SACE_6913
SENT454169 SEHA_C2548SEHA_C2545SEHA_C2550SEHA_C2546SEHA_C2547SEHA_C2549
SENT321314 SCH_2308SCH_2305SCH_2310SCH_2306SCH_2307SCH_2309
SENT295319 SPA0555SPA0558SPA0553SPA0557SPA0556SPA0554
SENT220341 STY2538STY2535STY2541STY2536STY2537STY2540
SENT209261 T0555T0558T0553T0557T0556T0554
SELO269084 SYC0762_CSYC0525_CSYC1908_DSYC0526_CSYC0926_DSYC0121_D
SDYS300267 SDY_2459SDY_2456SDY_2461SDY_2457SDY_2458SDY_2460
SBOY300268 SBO_2300SBO_2297SBO_2302SBO_2298SBO_2299SBO_2301
SBAL402882 SHEW185_4158SHEW185_4160SHEW185_4311SHEW185_4159SHEW185_4358SHEW185_4157
SBAL399599 SBAL195_4289SBAL195_4291SBAL195_4451SBAL195_4290SBAL195_4500SBAL195_4288
SACI56780 SYN_02621SYN_02620SYN_02398SYN_02619SYN_02400SYN_02399
RXYL266117 RXYL_2894RXYL_2891RXYL_2897RXYL_2892RXYL_2893RXYL_2896
RSP357808 ROSERS_4115ROSERS_3859ROSERS_0026ROSERS_0024ROSERS_0025
RSP101510 RHA1_RO02011RHA1_RO05194RHA1_RO02001RHA1_RO02630RHA1_RO01997
RSAL288705 RSAL33209_2701RSAL33209_2639RSAL33209_2644RSAL33209_2700RSAL33209_2643
RCAS383372 RCAS_1310RCAS_0559RCAS_4216RCAS_4218RCAS_4217
PPRO298386 PBPRA2623PBPRA2621PBPRA2625PBPRA2622PBPRA2624
PMUL272843 PM0055PM0357PM0053PM1094PM1096PM0054
PMAR59920 PMN2A_1542PMN2A_1545PMN2A_1543PMN2A_0044PMN2A_0043
PMAR167555 NATL1_02491NATL1_02521NATL1_02501NATL1_06641NATL1_06631
PLUT319225 PLUT_0329PLUT_0326PLUT_0332PLUT_0327PLUT_0328PLUT_0331
PLUM243265 PLU3072PLU3069PLU3074PLU3070PLU3071PLU3073
PING357804 PING_0351PING_0189PING_0355PING_0190PING_0350PING_0352
OIHE221109 OB2324OB2666OB2326OB2323OB2325
NSP35761 NOCA_1790NOCA_0508NOCA_0516NOCA_0509NOCA_4299NOCA_0510
NSP103690 ALL2753ALL0032ALR0034ALL2347ALR0312
NPHA348780 NP2738ANP2724ANP2736ANP2730ANP2726A
NFAR247156 NFA35240NFA51420NFA55430NFA51380NFA51330
MXAN246197 MXAN_3529MXAN_3532MXAN_3527MXAN_3531MXAN_3154MXAN_3528
MSUC221988 MS1793MS0864MS1795MS1791MS1792MS1794
MGIL350054 MFLV_0033MFLV_4680MFLV_5268MFLV_0025MFLV_5263
MAER449447 MAE_07710MAE_58410MAE_01970MAE_58420MAE_45860MAE_26640
MABS561007 MAB_3952MAB_3535MAB_3935CMAB_3945MAB_3933C
LXYL281090 LXX01450LXX01810LXX01430LXX01440LXX01490
LWEL386043 LWE1692LWE1690LWE1694LWE1691LWE1693
LSPH444177 BSPH_4276BSPH_4273BSPH_4278BSPH_4275BSPH_4277
LMON265669 LMOF2365_1698LMOF2365_1696LMOF2365_1700LMOF2365_1697LMOF2365_1699
LMON169963 LMO1674LMO1672LMO1676LMO1673LMO1675
LLAC272623 L0170L0172L0168L0171L0169
LLAC272622 LACR_0772LACR_0770LACR_0774LACR_0771LACR_0773
LINN272626 LIN1782LIN1780LIN1784LIN1781LIN1783
KRAD266940 KRAD_0637KRAD_3982KRAD_0643KRAD_0641KRAD_0646
KPNE272620 GKPORF_B1965GKPORF_B1962GKPORF_B1967GKPORF_B1963GKPORF_B1964GKPORF_B1966
HSOM228400 HSM_0967HSM_0356HSM_0969HSM_1611HSM_1612HSM_0968
HSOM205914 HS_0616HS_1207HS_0618HS_0563HS_0562HS_0617
HMUK485914 HMUK_0125HMUK_0041HMUK_1379HMUK_2252HMUK_2535
HMAR272569 RRNAC1977RRNAC0837RRNAC0844RRNAC0841RRNAC0838
HINF71421 HI_0282HI_0194HI_0285HI_0969HI_0968HI_0283
HINF374930 CGSHIEE_01645CGSHIEE_02280CGSHIEE_01635CGSHIEE_07115CGSHIEE_07120CGSHIEE_01640
HINF281310 NTHI0391NTHI0290NTHI0393NTHI1142NTHI1141NTHI0392
HHAL349124 HHAL_1128HHAL_1131HHAL_1126HHAL_1130HHAL_1129HHAL_1127
HDUC233412 HD_1854HD_1271HD_0621HD_1055HD_1925HD_1853
GTHE420246 GTNG_2772GTNG_2770GTNG_2774GTNG_3181GTNG_2771GTNG_2773
GKAU235909 GK2874GK1315GK2876GK2873GK2875
ESP42895 ENT638_2813ENT638_2810ENT638_2815ENT638_2811ENT638_2812ENT638_2814
EFER585054 EFER_0905EFER_0908EFER_0903EFER_0907EFER_0906EFER_0904
EFAE226185 EF_0449EF_0447EF_1511EF_0445EF_0448
ECOO157 YFBBMENEMENFMENCMENBMEND
ECOL83334 ECS3151ECS3148ECS3153ECS3149ECS3150ECS3152
ECOL585397 ECED1_2731ECED1_2728ECED1_2733ECED1_2729ECED1_2730ECED1_2732
ECOL585057 ECIAI39_2411ECIAI39_2408ECIAI39_2413ECIAI39_2409ECIAI39_2410ECIAI39_2412
ECOL585056 ECUMN_2606ECUMN_2603ECUMN_2608ECUMN_2604ECUMN_2605ECUMN_2607
ECOL585055 EC55989_2511EC55989_2508EC55989_2513EC55989_2509EC55989_2510EC55989_2512
ECOL585035 ECS88_2414ECS88_2411ECS88_2416ECS88_2412ECS88_2413ECS88_2415
ECOL585034 ECIAI1_2341ECIAI1_2338ECIAI1_2343ECIAI1_2339ECIAI1_2340ECIAI1_2342
ECOL481805 ECOLC_1385ECOLC_1388ECOLC_1383ECOLC_1387ECOLC_1386ECOLC_1384
ECOL469008 ECBD_1395ECBD_1398ECBD_1393ECBD_1397ECBD_1396ECBD_1394
ECOL439855 ECSMS35_2418ECSMS35_2415ECSMS35_2420ECSMS35_2416ECSMS35_2417ECSMS35_2419
ECOL413997 ECB_02190ECB_02187ECB_02192ECB_02188ECB_02189ECB_02191
ECOL409438 ECSE_2523ECSE_2520ECSE_2525ECSE_2521ECSE_2522ECSE_2524
ECOL405955 APECO1_4298APECO1_4301APECO1_4296APECO1_4300APECO1_4299APECO1_4297
ECOL364106 UTI89_C2547UTI89_C2543UTI89_C2549UTI89_C2544UTI89_C2545UTI89_C2548
ECOL362663 ECP_2307ECP_2304ECP_2309ECP_2305ECP_2306ECP_2308
ECOL331111 ECE24377A_2559ECE24377A_2556ECE24377A_2562ECE24377A_2557ECE24377A_2558ECE24377A_2560
ECOL316407 ECK2257:JW2258:B2263ECK2254:JW2255:B2260ECK2259:JW2260:B2265ECK2255:JW2256:B2261ECK2256:JW2257:B2262ECK2258:JW5374:B2264
ECOL199310 C2807C2803C2809C2804C2805C2808
ECAR218491 ECA1212ECA1215ECA1210ECA1214ECA1213ECA1211
DHAF138119 DSY0519DSY0521DSY0517DSY0520DSY0518
DARO159087 DARO_2822DARO_2823DARO_1615DARO_1616DARO_2345
CTEP194439 CT_1845CT_1848CT_1838CT_1847CT_1846CT_1839
CMIC443906 CMM_0577CMM_2810CMM_0573CMM_0576CMM_2812
CMIC31964 CMS2585CMS3013CMS2583CMS2584CMS3017
CGLU196627 CG0533CG1462CG0551CG0548CG0552
CEFF196164 CE0471CE1388CE0477CE2780CE0478
CDIP257309 DIP0420DIP1114DIP0422DIP0421DIP0423
CCHL340177 CAG_1720CAG_1672CAG_1701CAG_1718CAG_1719CAG_1700
BWEI315730 BCERKBAB4_4696BCERKBAB4_0779BCERKBAB4_4698BCERKBAB4_4695BCERKBAB4_4697
BTHU412694 BALH_4420BALH_0790BALH_2108BALH_2558BALH_4419BALH_4421
BTHU281309 BT9727_4587BT9727_0778BT9727_2144BT9727_2610BT9727_4586BT9727_4588
BSUB BSU30810BSU30790BSU30830BSU30800BSU30820
BPUM315750 BPUM_2717BPUM_2715BPUM_2719BPUM_2716BPUM_2718
BLIC279010 BL02407BL01987BL02409BL02406BL02408
BCER572264 BCA_4990BCA_0929BCA_2436BCA_2931BCA_4989BCA_4991
BCER405917 BCE_5014BCE_0965BCE_5016BCE_5013BCE_5015
BCER315749 BCER98_3492BCER98_0707BCER98_3494BCER98_1937BCER98_3491BCER98_3493
BCER288681 BCE33L4609BCE33L0779BCE33L2128BCE33L2578BCE33L4608BCE33L4610
BCER226900 BC_4854BC_0890BC_2303BC_4853BC_4855
BBAC264462 BD3483BD0279BD3485BD3492BD3484
BANT592021 BAA_5122BAA_0981BAA_2427BAA_5121BAA_5123
BANT568206 BAMEG_5144BAMEG_3684BAMEG_2231BAMEG_5143BAMEG_5145
BANT261594 GBAA5110GBAA0876GBAA2369GBAA5109GBAA5111
BANT260799 BAS4749BAS0832BAS2205BAS4748BAS4750
AVAR240292 AVA_4319AVA_2636AVA_2632AVA_2635AVA_0166AVA_4706
ASAL382245 ASA_3736ASA_3733ASA_3738ASA_3734ASA_3735ASA_3737
APLE434271 APJL_1784APJL_0752APJL_1060APJL_0369APJL_1860APJL_1785
APLE416269 APL_1749APL_0751APL_1042APL_0353APL_1824APL_1750
AMAR329726 AM1_3754AM1_A0125AM1_3753AM1_5258AM1_1108
AHYD196024 AHA_0530AHA_0527AHA_0532AHA_0528AHA_0529AHA_0531


Organism features enriched in list (features available for 138 out of the 144 orgs in the list)
Feature    Pvalue       Num occurrences in list  Total num occurrences  
Arrangment:Pairs 0.000509440112
Arrangment:Singles 0.000262585286
Disease:Anthrax 0.003035844
Disease:Bubonic_plague 0.000161766
Disease:Dysentery 0.000161766
Disease:Gastroenteritis 4.505e-61113
Disease:Urinary_tract_infection 0.003035844
Endospores:No 0.006775639211
Endospores:Yes 0.00122312253
GC_Content_Range4:0-40 4.247e-629213
GC_Content_Range4:40-60 1.181e-1187224
GC_Content_Range4:60-100 0.001636722145
GC_Content_Range7:30-40 0.007054329166
GC_Content_Range7:40-50 0.002550839117
GC_Content_Range7:50-60 4.050e-848107
GC_Content_Range7:60-70 0.000070716134
Genome_Size_Range5:0-2 3.562e-146155
Genome_Size_Range5:4-6 1.459e-1684184
Genome_Size_Range9:1-2 1.605e-106128
Genome_Size_Range9:4-5 0.00006153896
Genome_Size_Range9:5-6 1.306e-104688
Habitat:Host-associated 0.000788934206
Habitat:Multiple 0.001272556178
Motility:No 0.008214226151
Motility:Yes 0.000044683267
Optimal_temp.:20-30 0.008741057
Optimal_temp.:28-30 0.008741057
Oxygen_Req:Aerobic 0.002138031185
Oxygen_Req:Anaerobic 4.998e-68102
Oxygen_Req:Facultative 2.398e-1891201
Pathogenic_in:Human 0.005343762213
Pathogenic_in:No 0.001115739226
Shape:Coccus 0.0001145782
Shape:Rod 1.475e-10113347
Shape:Spiral 0.0008557134



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ORGANISMS CONTAINING AT MOST 1 GENES FROM THE GROUP:

Total number of orgs: 278
Effective number of orgs (counting one per cluster within 468 clusters): 220

Organism list
Homologs in each organism in the list
Features enriched in organism list


Follow (ncbi) link, when present, to find the set of organism features for each organism
Org ID  Org Name  # genes in group found in org  
ZMOB264203 ncbi Zymomonas mobilis mobilis ZM41
XFAS405440 ncbi Xylella fastidiosa M121
XFAS183190 ncbi Xylella fastidiosa Temecula11
XFAS160492 ncbi Xylella fastidiosa 9a5c1
WSUC273121 ncbi Wolinella succinogenes DSM 17400
WPIP955 Wolbachia pipientis0
WPIP80849 Wolbachia endosymbiont of Brugia malayi0
UURE95667 Ureaplasma urealyticum serovar 130
UURE95664 Ureaplasma urealyticum serovar 100
UPAR505682 ncbi Ureaplasma parvum serovar 3 str. ATCC 278150
UMET351160 ncbi uncultured methanogenic archaeon RC-I1
TVOL273116 ncbi Thermoplasma volcanium GSS10
TTHE300852 ncbi Thermus thermophilus HB81
TSP28240 Thermotoga sp.1
TSP1755 Thermoanaerobacter sp.1
TPSE340099 ncbi Thermoanaerobacter pseudethanolicus ATCC 332231
TPET390874 ncbi Thermotoga petrophila RKU-11
TPEN368408 ncbi Thermofilum pendens Hrk 51
TPAL243276 ncbi Treponema pallidum pallidum Nichols0
TMAR243274 ncbi Thermotoga maritima MSB81
TLET416591 ncbi Thermotoga lettingae TMO0
TKOD69014 ncbi Thermococcus kodakarensis KOD10
TDEN326298 ncbi Sulfurimonas denitrificans DSM 12510
TDEN243275 ncbi Treponema denticola ATCC 354050
TCRU317025 ncbi Thiomicrospira crunogena XCL-20
TACI273075 ncbi Thermoplasma acidophilum DSM 17280
SWOL335541 ncbi Syntrophomonas wolfei wolfei Goettingen1
STRO369723 ncbi Salinispora tropica CNB-4400
STHE322159 ncbi Streptococcus thermophilus LMD-90
STHE299768 ncbi Streptococcus thermophilus CNRZ10660
STHE264199 ncbi Streptococcus thermophilus LMG 183110
SSUI391296 ncbi Streptococcus suis 98HAH330
SSUI391295 ncbi Streptococcus suis 05ZYH330
SSP644076 Silicibacter sp. TrichCH4B0
SSP387093 ncbi Sulfurovum sp. NBC37-10
SSP292414 ncbi Ruegeria sp. TM10401
SSOL273057 ncbi Sulfolobus solfataricus P21
SPYO370554 ncbi Streptococcus pyogenes MGAS107500
SPYO370553 ncbi Streptococcus pyogenes MGAS20960
SPYO370552 ncbi Streptococcus pyogenes MGAS102700
SPYO370551 ncbi Streptococcus pyogenes MGAS94290
SPYO319701 ncbi Streptococcus pyogenes MGAS61800
SPYO293653 ncbi Streptococcus pyogenes MGAS50050
SPYO286636 ncbi Streptococcus pyogenes MGAS103940
SPYO198466 ncbi Streptococcus pyogenes MGAS3150
SPYO193567 ncbi Streptococcus pyogenes SSI-10
SPYO186103 ncbi Streptococcus pyogenes MGAS82320
SPYO160490 ncbi Streptococcus pyogenes M1 GAS0
SPNE488221 ncbi Streptococcus pneumoniae 705850
SPNE487214 ncbi Streptococcus pneumoniae Hungary19A-60
SPNE487213 ncbi Streptococcus pneumoniae Taiwan19F-140
SPNE171101 ncbi Streptococcus pneumoniae R60
SPNE170187 ncbi Streptococcus pneumoniae G540
SPNE1313 Streptococcus pneumoniae0
SMUT210007 ncbi Streptococcus mutans UA1590
SMEL266834 ncbi Sinorhizobium meliloti 10211
SMAR399550 ncbi Staphylothermus marinus F10
SGOR29390 Streptococcus gordonii Challis1
SGLO343509 ncbi Sodalis glossinidius morsitans0
SDEN318161 ncbi Shewanella denitrificans OS2170
SDEG203122 ncbi Saccharophagus degradans 2-401
SAGA211110 ncbi Streptococcus agalactiae NEM3160
SAGA208435 ncbi Streptococcus agalactiae 2603V/R0
SAGA205921 ncbi Streptococcus agalactiae A9090
RTYP257363 ncbi Rickettsia typhi Wilmington0
RSOL267608 ncbi Ralstonia solanacearum GMI10001
RRIC452659 ncbi Rickettsia rickettsii Iowa0
RRIC392021 ncbi Rickettsia rickettsii Sheila Smith0
RPRO272947 ncbi Rickettsia prowazekii Madrid E0
RMAS416276 ncbi Rickettsia massiliae MTU50
RFER338969 ncbi Rhodoferax ferrireducens T1181
RFEL315456 ncbi Rickettsia felis URRWXCal20
RETL347834 ncbi Rhizobium etli CFN 421
RDEN375451 ncbi Roseobacter denitrificans OCh 1140
RCON272944 ncbi Rickettsia conorii Malish 70
RCAN293613 ncbi Rickettsia canadensis McKiel0
RBEL391896 ncbi Rickettsia bellii OSU 85-3890
RBEL336407 ncbi Rickettsia bellii RML369-C0
RALB246199 Ruminococcus albus 80
RAKA293614 ncbi Rickettsia akari Hartford0
PTOR263820 ncbi Picrophilus torridus DSM 97900
PSYR223283 ncbi Pseudomonas syringae pv. tomato str. DC30001
PSYR205918 ncbi Pseudomonas syringae pv. syringae B728a0
PSTU379731 ncbi Pseudomonas stutzeri A15011
PSP56811 Psychrobacter sp.0
PSP312153 ncbi Polynucleobacter necessarius asymbioticus QLW-P1DMWA-11
PSP117 Pirellula sp.0
PPEN278197 ncbi Pediococcus pentosaceus ATCC 257450
PMOB403833 ncbi Petrotoga mobilis SJ950
PMEN399739 ncbi Pseudomonas mendocina ymp1
PHOR70601 ncbi Pyrococcus horikoshii OT30
PHAL326442 ncbi Pseudoalteromonas haloplanktis TAC1250
PFUR186497 ncbi Pyrococcus furiosus DSM 36381
PFLU216595 ncbi Pseudomonas fluorescens SBW250
PFLU205922 ncbi Pseudomonas fluorescens Pf0-11
PENT384676 ncbi Pseudomonas entomophila L481
PCRY335284 ncbi Psychrobacter cryohalolentis K50
PCAR338963 ncbi Pelobacter carbinolicus DSM 23801
PAST100379 Onion yellows phytoplasma0
PARC259536 ncbi Psychrobacter arcticus 273-40
PABY272844 ncbi Pyrococcus abyssi GE50
OTSU357244 ncbi Orientia tsutsugamushi Boryong0
OANT439375 ncbi Ochrobactrum anthropi ATCC 491881
NSP387092 ncbi Nitratiruptor sp. SB155-20
NSEN222891 ncbi Neorickettsia sennetsu Miyayama0
NOCE323261 ncbi Nitrosococcus oceani ATCC 197071
NMUL323848 ncbi Nitrosospira multiformis ATCC 251960
NMEN374833 ncbi Neisseria meningitidis 0534420
NMEN272831 ncbi Neisseria meningitidis FAM180
NMEN122587 ncbi Neisseria meningitidis Z24910
NMEN122586 ncbi Neisseria meningitidis MC580
NHAM323097 ncbi Nitrobacter hamburgensis X141
NGON242231 ncbi Neisseria gonorrhoeae FA 10900
NEUR228410 ncbi Nitrosomonas europaea ATCC 197181
MTHE349307 ncbi Methanosaeta thermophila PT1
MSYN262723 ncbi Mycoplasma synoviae 530
MSTA339860 ncbi Methanosphaera stadtmanae DSM 30911
MPUL272635 ncbi Mycoplasma pulmonis UAB CTIP0
MPNE272634 ncbi Mycoplasma pneumoniae M1290
MPET420662 ncbi Methylibium petroleiphilum PM10
MPEN272633 ncbi Mycoplasma penetrans HF-20
MMYC272632 ncbi Mycoplasma mycoides mycoides SC str. PG10
MMOB267748 ncbi Mycoplasma mobile 163K0
MMAZ192952 ncbi Methanosarcina mazei Go11
MMAR444158 ncbi Methanococcus maripaludis C61
MMAR426368 ncbi Methanococcus maripaludis C71
MMAR368407 ncbi Methanoculleus marisnigri JR11
MMAR267377 ncbi Methanococcus maripaludis S21
MLAB410358 ncbi Methanocorpusculum labreanum Z1
MHYO295358 ncbi Mycoplasma hyopneumoniae 2320
MHYO262722 ncbi Mycoplasma hyopneumoniae 74480
MHYO262719 ncbi Mycoplasma hyopneumoniae J0
MHUN323259 ncbi Methanospirillum hungatei JF-11
MGEN243273 ncbi Mycoplasma genitalium G370
MFLO265311 ncbi Mesoplasma florum L10
MFLA265072 ncbi Methylobacillus flagellatus KT1
MEXT419610 ncbi Methylobacterium extorquens PA10
MCAP340047 ncbi Mycoplasma capricolum capricolum ATCC 273430
MBUR259564 ncbi Methanococcoides burtonii DSM 62421
MBAR269797 ncbi Methanosarcina barkeri Fusaro1
MART243272 ncbi Mycoplasma arthritidis 158L3-10
MAEO419665 ncbi Methanococcus aeolicus Nankai-31
MACE188937 ncbi Methanosarcina acetivorans C2A1
LSAK314315 ncbi Lactobacillus sakei sakei 23K0
LPNE400673 ncbi Legionella pneumophila Corby0
LPNE297246 ncbi Legionella pneumophila Paris0
LPNE297245 ncbi Legionella pneumophila Lens0
LPNE272624 ncbi Legionella pneumophila pneumophila Philadelphia 10
LPLA220668 ncbi Lactobacillus plantarum WCFS10
LJOH257314 ncbi Lactobacillus johnsonii NCC 5330
LINT363253 ncbi Lawsonia intracellularis PHE/MN1-001
LINT267671 ncbi Leptospira interrogans serovar Copenhageni str. Fiocruz L1-1300
LINT189518 ncbi Leptospira interrogans serovar Lai str. 566010
LHEL405566 ncbi Lactobacillus helveticus DPC 45710
LGAS324831 ncbi Lactobacillus gasseri ATCC 333230
LDEL390333 ncbi Lactobacillus delbrueckii bulgaricus ATCC 118421
LDEL321956 ncbi Lactobacillus delbrueckii bulgaricus ATCC BAA-3651
LCAS321967 ncbi Lactobacillus casei ATCC 3341
LBOR355277 ncbi Leptospira borgpetersenii serovar Hardjo-bovis JB1970
LBOR355276 ncbi Leptospira borgpetersenii serovar Hardjo-bovis L5500
LBIF456481 ncbi Leptospira biflexa serovar Patoc strain Patoc 1 (Paris)1
LBIF355278 ncbi Leptospira biflexa serovar Patoc strain Patoc 1 (Ames)1
LACI272621 ncbi Lactobacillus acidophilus NCFM0
JSP375286 ncbi Janthinobacterium sp. Marseille1
ILOI283942 ncbi Idiomarina loihiensis L2TR0
IHOS453591 ncbi Ignicoccus hospitalis KIN4/I1
HPYL85963 ncbi Helicobacter pylori J990
HPYL357544 ncbi Helicobacter pylori HPAG10
HPY ncbi Helicobacter pylori 266950
HHEP235279 ncbi Helicobacter hepaticus ATCC 514490
HCHE349521 ncbi Hahella chejuensis KCTC 23961
HBUT415426 ncbi Hyperthermus butylicus DSM 54561
HARS204773 ncbi Herminiimonas arsenicoxydans0
HACI382638 ncbi Helicobacter acinonychis Sheeba0
GOXY290633 ncbi Gluconobacter oxydans 621H0
GBET391165 ncbi Granulibacter bethesdensis CGDNIH11
FTUL458234 ncbi Francisella tularensis holarctica FTNF002-000
FTUL418136 ncbi Francisella tularensis tularensis WY96-34180
FTUL401614 ncbi Francisella novicida U1120
FTUL393115 ncbi Francisella tularensis tularensis FSC1980
FTUL393011 ncbi Francisella tularensis holarctica OSU180
FTUL351581 Francisella tularensis holarctica FSC2000
FSUC59374 ncbi Fibrobacter succinogenes succinogenes S851
FSP1855 Frankia sp. EAN1pec1
FSP106370 ncbi Frankia sp. CcI30
FRANT ncbi Francisella tularensis tularensis SCHU S40
FPHI484022 ncbi Francisella philomiragia philomiragia ATCC 250171
FNUC190304 ncbi Fusobacterium nucleatum nucleatum ATCC 255860
FNOD381764 ncbi Fervidobacterium nodosum Rt17-B10
FMAG334413 ncbi Finegoldia magna ATCC 293280
FALN326424 ncbi Frankia alni ACN14a1
ERUM302409 ncbi Ehrlichia ruminantium Gardel0
ERUM254945 ncbi Ehrlichia ruminantium Welgevonden0
ELIT314225 ncbi Erythrobacter litoralis HTCC25941
ECHA205920 ncbi Ehrlichia chaffeensis Arkansas0
ECAN269484 ncbi Ehrlichia canis Jake0
DSP255470 ncbi Dehalococcoides sp. CBDB11
DSP216389 ncbi Dehalococcoides sp. BAV11
DSHI398580 ncbi Dinoroseobacter shibae DFL 120
DRAD243230 ncbi Deinococcus radiodurans R11
DOLE96561 ncbi Desulfococcus oleovorans Hxd31
DNOD246195 ncbi Dichelobacter nodosus VCS1703A0
DETH243164 ncbi Dehalococcoides ethenogenes 1951
CVIO243365 ncbi Chromobacterium violaceum ATCC 124721
CVES412965 ncbi Candidatus Vesicomyosocius okutanii HA0
CTRA471473 ncbi Chlamydia trachomatis L2b/UCH-1/proctitis0
CTRA471472 ncbi Chlamydia trachomatis 434/Bu0
CTET212717 ncbi Clostridium tetani E881
CSUL444179 ncbi Candidatus Sulcia muelleri GWSS0
CRUT413404 ncbi Candidatus Ruthia magnifica Cm (Calyptogena magnifica)0
CPSY167879 ncbi Colwellia psychrerythraea 34H0
CPNE182082 ncbi Chlamydophila pneumoniae TW-1830
CPNE138677 ncbi Chlamydophila pneumoniae J1380
CPNE115713 ncbi Chlamydophila pneumoniae CWL0290
CPNE115711 ncbi Chlamydophila pneumoniae AR390
CPHY357809 ncbi Clostridium phytofermentans ISDg0
CPER289380 ncbi Clostridium perfringens SM1011
CPER195103 ncbi Clostridium perfringens ATCC 131241
CPER195102 ncbi Clostridium perfringens 131
CPEL335992 ncbi Candidatus Pelagibacter ubique HTCC10621
CNOV386415 ncbi Clostridium novyi NT1
CMUR243161 ncbi Chlamydia muridarum Nigg0
CMET456442 ncbi Candidatus Methanoregula boonei 6A81
CJEJ407148 ncbi Campylobacter jejuni jejuni 811160
CJEJ360109 ncbi Campylobacter jejuni doylei 269.970
CJEJ354242 ncbi Campylobacter jejuni jejuni 81-1760
CJEJ195099 ncbi Campylobacter jejuni RM12210
CJEJ192222 ncbi Campylobacter jejuni jejuni NCTC 111680
CJAP155077 Cellvibrio japonicus0
CHOM360107 ncbi Campylobacter hominis ATCC BAA-3810
CFET360106 ncbi Campylobacter fetus fetus 82-400
CFEL264202 ncbi Chlamydophila felis Fe/C-560
CDIF272563 ncbi Clostridium difficile 6301
CDES477974 ncbi Candidatus Desulforudis audaxviator MP104C1
CCUR360105 ncbi Campylobacter curvus 525.920
CCON360104 ncbi Campylobacter concisus 138260
CCAV227941 ncbi Chlamydophila caviae GPIC0
CBUR434922 ncbi Coxiella burnetii Dugway 5J108-1110
CBUR360115 ncbi Coxiella burnetii RSA 3310
CBUR227377 ncbi Coxiella burnetii RSA 4930
CBLO291272 ncbi Candidatus Blochmannia pennsylvanicus BPEN0
CBLO203907 ncbi Candidatus Blochmannia floridanus0
CBEI290402 ncbi Clostridium beijerinckii NCIMB 80521
CACE272562 ncbi Clostridium acetobutylicum ATCC 8241
CABO218497 ncbi Chlamydophila abortus S26/30
BTUR314724 ncbi Borrelia turicatae 91E1350
BTRI382640 ncbi Bartonella tribocorum CIP 1054760
BSUI204722 ncbi Brucella suis 13301
BSP107806 ncbi Buchnera aphidicola APS (Acyrthosiphon pisum)0
BQUI283165 ncbi Bartonella quintana Toulouse0
BPER257313 ncbi Bordetella pertussis Tohama I1
BOVI236 Brucella ovis0
BMEL359391 ncbi Brucella melitensis biovar Abortus 23081
BHER314723 ncbi Borrelia hermsii DAH0
BHEN283166 ncbi Bartonella henselae Houston-10
BGAR290434 ncbi Borrelia garinii PBi0
BCIC186490 Candidatus Baumannia cicadellinicola0
BCAN483179 ncbi Brucella canis ATCC 233650
BBUR224326 ncbi Borrelia burgdorferi B310
BBAC360095 ncbi Bartonella bacilliformis KC5830
BAPH372461 ncbi Buchnera aphidicola Cc (Cinara cedri)0
BAPH198804 ncbi Buchnera aphidicola Sg (Schizaphis graminum)0
BAMB398577 ncbi Burkholderia ambifaria MC40-61
BAFZ390236 ncbi Borrelia afzelii PKo0
BABO262698 ncbi Brucella abortus bv. 1 str. 9-9411
AYEL322098 ncbi Aster yellows witches-broom phytoplasma AYWB0
AURANTIMONAS Aurantimonas manganoxydans SI85-9A10
APHA212042 ncbi Anaplasma phagocytophilum HZ0
APER272557 ncbi Aeropyrum pernix K11
AORE350688 ncbi Alkaliphilus oremlandii OhILAs1
AMAR234826 ncbi Anaplasma marginale St. Maries0
ALAI441768 ncbi Acholeplasma laidlawii PG-8A0
AFER243159 ncbi Acidithiobacillus ferrooxidans ATCC 232701
AEHR187272 ncbi Alkalilimnicola ehrlichii MLHE-11
ACEL351607 ncbi Acidothermus cellulolyticus 11B0
ABUT367737 ncbi Arcobacter butzleri RM40180
ABOR393595 ncbi Alcanivorax borkumensis SK21
AAEO224324 ncbi Aquifex aeolicus VF51


Names of the homologs of the genes in the group in each of these orgs
  EG12438   EG12437   EG12362   EG11532   EG11368   EG10579   
ZMOB264203 ZMO0113
XFAS405440 XFASM12_0179
XFAS183190 PD_0170
XFAS160492 XF0210
WSUC273121
WPIP955
WPIP80849
UURE95667
UURE95664
UPAR505682
UMET351160 RCIX797
TVOL273116
TTHE300852 TTHA1844
TSP28240 TRQ2_0806
TSP1755 TETH514_1062
TPSE340099 TETH39_0579
TPET390874 TPET_0783
TPEN368408 TPEN_1837
TPAL243276
TMAR243274 TM_0142
TLET416591
TKOD69014
TDEN326298
TDEN243275
TCRU317025
TACI273075
SWOL335541 SWOL_2031
STRO369723
STHE322159
STHE299768
STHE264199
SSUI391296
SSUI391295
SSP644076
SSP387093
SSP292414 TM1040_1170
SSOL273057 SSO0893
SPYO370554
SPYO370553
SPYO370552
SPYO370551
SPYO319701
SPYO293653
SPYO286636
SPYO198466
SPYO193567
SPYO186103
SPYO160490
SPNE488221
SPNE487214
SPNE487213
SPNE171101
SPNE170187
SPNE1313
SMUT210007
SMEL266834 SMC02263
SMAR399550
SGOR29390 SGO_0657
SGLO343509
SDEN318161
SDEG203122 SDE_3400
SAGA211110
SAGA208435
SAGA205921
RTYP257363
RSOL267608 RSC2872
RRIC452659
RRIC392021
RPRO272947
RMAS416276
RFER338969 RFER_3898
RFEL315456
RETL347834 RHE_CH02790
RDEN375451
RCON272944
RCAN293613
RBEL391896
RBEL336407
RALB246199
RAKA293614
PTOR263820
PSYR223283 PSPTO_2595
PSYR205918
PSTU379731 PST_1925
PSP56811
PSP312153 PNUC_1558
PSP117
PPEN278197
PMOB403833
PMEN399739 PMEN_3817
PHOR70601
PHAL326442
PFUR186497 PF1709
PFLU216595
PFLU205922 PFL_3939
PENT384676 PSEEN2504
PCRY335284
PCAR338963 PCAR_0730
PAST100379
PARC259536
PABY272844
OTSU357244
OANT439375 OANT_4115
NSP387092
NSEN222891
NOCE323261 NOC_2494
NMUL323848
NMEN374833
NMEN272831
NMEN122587
NMEN122586
NHAM323097 NHAM_2722
NGON242231
NEUR228410 NE2298
MTHE349307 MTHE_1541
MSYN262723
MSTA339860 MSP_1070
MPUL272635
MPNE272634
MPET420662
MPEN272633
MMYC272632
MMOB267748
MMAZ192952 MM2818
MMAR444158 MMARC6_1653
MMAR426368 MMARC7_1674
MMAR368407 MEMAR_0071
MMAR267377 MMP1006
MLAB410358 MLAB_1399
MHYO295358
MHYO262722
MHYO262719
MHUN323259 MHUN_1785
MGEN243273
MFLO265311
MFLA265072 MFLA_2162
MEXT419610
MCAP340047
MBUR259564 MBUR_2365
MBAR269797 MBAR_A3626
MART243272
MAEO419665 MAEO_1117
MACE188937 MA2987
LSAK314315
LPNE400673
LPNE297246
LPNE297245
LPNE272624
LPLA220668
LJOH257314
LINT363253 LI0807
LINT267671
LINT189518
LHEL405566
LGAS324831
LDEL390333 LDB1742
LDEL321956 LBUL_1615
LCAS321967 LSEI_2772
LBOR355277
LBOR355276
LBIF456481 LEPBI_I0792
LBIF355278 LBF_0766
LACI272621
JSP375286 MMA_0235
ILOI283942
IHOS453591 IGNI_0925
HPYL85963
HPYL357544
HPY
HHEP235279
HCHE349521 HCH_06563
HBUT415426 HBUT_0684
HARS204773
HACI382638
GOXY290633
GBET391165 GBCGDNIH1_0824
FTUL458234
FTUL418136
FTUL401614
FTUL393115
FTUL393011
FTUL351581
FSUC59374 FSU0540
FSP1855 FRANEAN1_4529
FSP106370
FRANT
FPHI484022 FPHI_1647
FNUC190304
FNOD381764
FMAG334413
FALN326424 FRAAL3400
ERUM302409
ERUM254945
ELIT314225 ELI_06485
ECHA205920
ECAN269484
DSP255470 CBDBA1441
DSP216389 DEHABAV1_1271
DSHI398580
DRAD243230 DR_1151
DOLE96561 DOLE_1569
DNOD246195
DETH243164 DET_1481
CVIO243365 CV_1485
CVES412965
CTRA471473
CTRA471472
CTET212717 CTC_00479
CSUL444179
CRUT413404
CPSY167879
CPNE182082
CPNE138677
CPNE115713
CPNE115711
CPHY357809
CPER289380 CPR_2287
CPER195103 CPF_2585
CPER195102 CPE2301
CPEL335992 SAR11_0003
CNOV386415 NT01CX_0474
CMUR243161
CMET456442 MBOO_0228
CJEJ407148
CJEJ360109
CJEJ354242
CJEJ195099
CJEJ192222
CJAP155077
CHOM360107
CFET360106
CFEL264202
CDIF272563 CD0800
CDES477974 DAUD_1191
CCUR360105
CCON360104
CCAV227941
CBUR434922
CBUR360115
CBUR227377
CBLO291272
CBLO203907
CBEI290402 CBEI_0321
CACE272562 CAC2712
CABO218497
BTUR314724
BTRI382640
BSUI204722 BR_A0016
BSP107806
BQUI283165
BPER257313 BP3277
BOVI236
BMEL359391 BAB2_0015
BHER314723
BHEN283166
BGAR290434
BCIC186490
BCAN483179
BBUR224326
BBAC360095
BAPH372461
BAPH198804
BAMB398577 BAMMC406_1748
BAFZ390236
BABO262698 BRUAB2_0016
AYEL322098
AURANTIMONAS
APHA212042
APER272557 APE0396
AORE350688 CLOS_0165
AMAR234826
ALAI441768
AFER243159 AFE_3088
AEHR187272 MLG_1601
ACEL351607
ABUT367737
ABOR393595 ABO_2748
AAEO224324 AQ_582


Organism features enriched in list (features available for 259 out of the 278 orgs in the list)
Feature    Pvalue       Num occurrences in list  Total num occurrences  
Arrangment:Clusters 0.0005431117
Arrangment:Pairs 0.000603935112
Disease:Pharyngitis 0.001427588
Disease:Wide_range_of_infections 0.00011791111
Disease:bronchitis_and_pneumonitis 0.001427588
Endospores:No 0.0072551106211
Endospores:Yes 0.00034361253
GC_Content_Range4:0-40 5.505e-16141213
GC_Content_Range4:60-100 7.086e-1427145
GC_Content_Range7:0-30 2.174e-94047
GC_Content_Range7:30-40 2.441e-7101166
GC_Content_Range7:60-70 1.169e-1225134
Genome_Size_Range5:0-2 1.323e-36134155
Genome_Size_Range5:4-6 6.379e-2230184
Genome_Size_Range5:6-10 0.0001132947
Genome_Size_Range9:0-1 9.339e-82527
Genome_Size_Range9:1-2 5.832e-27109128
Genome_Size_Range9:4-5 2.767e-81996
Genome_Size_Range9:5-6 4.206e-121188
Genome_Size_Range9:6-8 0.0035947938
Gram_Stain:Gram_Pos 0.004136754150
Habitat:Host-associated 3.702e-6117206
Habitat:Multiple 0.002787965178
Habitat:Terrestrial 0.0058639731
Motility:Yes 0.000172698267
Optimal_temp.:30 0.0093566215
Optimal_temp.:30-35 0.003262977
Optimal_temp.:30-37 0.0003129118
Oxygen_Req:Anaerobic 0.003355057102
Oxygen_Req:Facultative 0.000015366201
Pathogenic_in:Cattle 0.007441666
Salinity:Non-halophilic 0.008823857106
Shape:Coccus 0.00211214882
Shape:Irregular_coccus 0.00119371417
Shape:Rod 9.253e-15109347
Shape:Sphere 3.525e-61819
Shape:Spiral 4.989e-93134



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ORGANISMS ENRICHED FOR GROUP:

Total number of orgs: 1
Effective number of orgs (counting one per cluster within 468 clusters): 1

Organism list
Homologs in each organism in the list
Features enriched in organism list


Follow (ncbi) link, when present, to find the set of organism features for each organism
Org ID  Org Name    Pvalue       # genes in tgt genome found in org  # genes in group found in org  
CCHL340177 ncbi Chlorobium chlorochromatii CaD3 0.00946247956


Names of the homologs of the genes in the group in each of these orgs
  EG12438   EG12437   EG12362   EG11532   EG11368   EG10579   
CCHL340177 CAG_1720CAG_1672CAG_1701CAG_1718CAG_1719CAG_1700


Organism features enriched in list (features available for 1 out of the 1 orgs in the list)
Feature    Pvalue       Num occurrences in list  Total num occurrences  



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ORGANISMS DEPLETED FOR GROUP:




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PHYLOGENETIC PROFILE SIMILARITY WITH KNOWN PATHWAYS:

Pathways or complexes with absolute value of Pearson coefficient with respect to candidate larger than 0.4 are listed below
The candidate is assumed to exist in orgs listed in section List of organisms containing most genes from the group


Pathway or complex  # Orgs containing it  # of those orgs also containing candidate  Pearson Coeff  
PWY-5837 (1,4-dihydroxy-2-naphthoate biosynthesis I)2281390.6822
PWY-6406 (salicylate biosynthesis I)1881250.6764
PWY-5852 (demethylmenaquinone-8 biosynthesis I)1671080.5966
PWY-5861 (superpathway of demethylmenaquinone-8 biosynthesis)50480.5107
TREDEGLOW-PWY (trehalose degradation I (low osmolarity))121720.4238
PWY-6374 (vibriobactin biosynthesis)77540.4188



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PAIRWISE GENOME CONTEXT SCORE MATRIX:

  EG12437   EG12362   EG11532   EG11368   EG10579   
EG124380.9992910.9995490.9992620.9995640.999696
EG124370.9992550.9996090.999430.999403
EG123620.9992760.9994240.999696
EG115320.9995190.999503
EG113680.999759
EG10579



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PAIRWISE BLAST SCORES:

  EG12438   EG12437   EG12362   EG11532   EG11368   EG10579   
EG124380.0f0-----
EG12437-0.0f0----
EG12362--0.0f0---
EG11532---0.0f0--
EG11368----0.0f0-
EG10579-----0.0f0



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PATHWAYS OR PROTEIN COMPLEX MATCHES IN TARGET ORG:

For each case, all genes involved in the pathway or complex are listed. For each gene we list: a tag indicating whether the gene is part of the candidate list or not, the average and the minimum scores of the gene to the candidate list, the gene name, and its product names.

- PWY-5838 (superpathway of menaquinone-8 biosynthesis I) (degree of match pw to cand: 0.600, degree of match cand to pw: 1.000, average score: 0.816)
  Genes in pathway or complex:
             0.8249 0.1533 EG10017 (ispB) OPPSYN-MONOMER (IspB)
             0.2445 0.1400 EG11110 (ybgC) EG11110-MONOMER (esterase/thioesterase)
   *in cand* 0.9996 0.9994 EG11368 (menB) NAPHTHOATE-SYN-MONOMER (MenB)
   *in cand* 0.9996 0.9993 EG12438 (menH) EG12438-MONOMER ((1R,6R)-2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase)
   *in cand* 0.9997 0.9994 EG10579 (menD) MEND-MONOMER (MenD)
   *in cand* 0.9995 0.9993 EG12362 (menF) MENF-MONOMER (MenF)
   *in cand* 0.9995 0.9993 EG11532 (menC) O-SUCCINYLBENZOATE-COA-SYN-MONOMER (o-succinylbenzoate synthase)
   *in cand* 0.9995 0.9993 EG12437 (menE) O-SUCCINYLBENZOATE-COA-LIG-MONOMER (MenE)
             0.9277 0.6008 EG11473 (ubiE) 2-OCTAPRENYL-METHOXY-BENZOQ-METH-MONOMER (bifunctional 2-octaprenyl-6-methoxy-1,4-benzoquinone methylase and S-adenosylmethionine:2-DMK methyltransferase)
             0.9985 0.9978 EG11880 (menA) DMK-MONOMER (1,4-dihydroxy-2-naphthoate octaprenyltransferase)
  All candidate genes found in this pathway

- PWY-5837 (1,4-dihydroxy-2-naphthoate biosynthesis I) (degree of match pw to cand: 0.857, degree of match cand to pw: 1.000, average score: 0.784)
  Genes in pathway or complex:
   *in cand* 0.9995 0.9993 EG12437 (menE) O-SUCCINYLBENZOATE-COA-LIG-MONOMER (MenE)
   *in cand* 0.9995 0.9993 EG11532 (menC) O-SUCCINYLBENZOATE-COA-SYN-MONOMER (o-succinylbenzoate synthase)
   *in cand* 0.9995 0.9993 EG12362 (menF) MENF-MONOMER (MenF)
   *in cand* 0.9997 0.9994 EG10579 (menD) MEND-MONOMER (MenD)
   *in cand* 0.9996 0.9993 EG12438 (menH) EG12438-MONOMER ((1R,6R)-2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase)
   *in cand* 0.9996 0.9994 EG11368 (menB) NAPHTHOATE-SYN-MONOMER (MenB)
             0.2445 0.1400 EG11110 (ybgC) EG11110-MONOMER (esterase/thioesterase)
  All candidate genes found in this pathway

- ALL-CHORISMATE-PWY (superpathway of chorismate) (degree of match pw to cand: 0.105, degree of match cand to pw: 1.000, average score: 0.580)
  Genes in pathway or complex:
             0.8477 0.7621 EG10799 (purN) GART-MONOMER (phosphoribosylglycinamide formyltransferase 1)
             0.8805 0.7591 EG11375 (folE) GTP-CYCLOHYDRO-I-MONOMER (GTP cyclohydrolase I monomer)
             0.6967 0.5185 EG11138 (nudB) H2NEOPTERINP3PYROPHOSPHOHYDRO-MONOMER (dihydroneopterin triphosphate pyrophosphohydrolase)
             0.5389 0.1428 EG11673 (folB) H2NEOPTERINALDOL-MONOMER (FolB)
             0.2992 0.1629 EG11374 (folK) H2PTERIDINEPYROPHOSPHOKIN-MONOMER (6-hydroxymethyl-7,8-dihydropterin pyrophosphokinase)
             0.6836 0.5351 G6862 (folM) G6862-MONOMER (dihydromonapterin reductase / dihydrofolate reductase)
             0.3127 0.0962 EG10326 (folA) DIHYDROFOLATEREDUCT-MONOMER (dihydrofolate reductase)
             0.9453 0.9135 EG10327 (folC) FOLC-MONOMER (bifunctional folypolyglutamate synthetase / dihydrofolate synthetase)
             0.7002 0.3737 EG10328 (folD) FOLD-MONOMER (FolD)
             0.6419 0.1089 EG10682 (pabA) PABASYN-COMPII-MONOMER (PabA)
             0.5070 0.2389 EG10683 (pabB) PABASYN-COMPI-MONOMER (PabB)
             0.4062 0.2692 EG50011 (folP) H2PTEROATESYNTH-MONOMER (FolP)
             0.7255 0.5977 EG11493 (pabC) ADCLY-MONOMER (pabC)
             0.3872 0.2940 EG11369 (ubiC) CHORPYRLY-MONOMER (chorismate lyase)
             0.4636 0.2123 EG11370 (ubiA) 4OHBENZOATE-OCTAPRENYLTRANSFER-MONOMER (4-hydroxybenzoate octaprenyltransferase)
             0.9533 0.9076 EG11044 (ubiX) UBIX-MONOMER (3-octaprenyl-4-hydroxybenzoate decarboxylase together with UbiG)
             0.3211 0.0743 EG11396 (ubiD) EG11396-MONOMER (3-octaprenyl-4-hydroxybenzoate carboxy-lyase monomer)
             0.5574 0.3725 EG11476 (ubiB) 2-OCTAPRENYLPHENOL-HYDROX-MONOMER (2-octaprenylphenol hydroxylase)
             0.9783 0.9574 EG11143 (ubiG) DHHB-METHYLTRANSFER-MONOMER (UbiG)
             0.4953 0.1988 EG11324 (ubiH) OCTAPRENYL-METHOXYPHENOL-OH-MONOMER (2-octaprenyl-6-methoxyphenol hydroxylase)
             0.3658 0.1106 G6365 (ubiF) OCTAPRENYL-METHYL-METHOXY-BENZOQ-OH-MON (2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinone hydroxylase)
             0.1263 0.0393 EG11040 (tyrB) TYRB-MONOMER (TyrB)
             0.2495 0.1543 EG10096 (aspC) ASPAMINOTRANS-MONOMER (AspC)
             0.6954 0.3596 EG10707 (pheA) CHORISMUTPREPHENDEHYDRAT-MONOMER (PheA)
             0.6651 0.4776 EG11039 (tyrA) CHORISMUTPREPHENDEHYDROG-MONOMER (TyrA)
             0.3302 0.0592 EG10497 (ilvE) BRANCHED-CHAINAMINOTRANSFER-MONOMER (IlvE)
             0.4752 0.1867 EG11026 (trpC) PRAI-IGPS (indole-3-glycerol phosphate synthase / phosphoribosylanthranilate isomerase)
             0.5820 0.2734 EG11027 (trpD) ANTHRANSYNCOMPII-MONOMER (anthranilate synthase component II)
             0.4719 0.1764 EG11028 (trpE) ANTHRANSYNCOMPI-MONOMER (anthranilate synthase component I)
             0.6324 0.3049 EG11024 (trpA) TRYPSYN-APROTEIN (tryptophan synthase, α subunit)
             0.5527 0.1257 EG11025 (trpB) TRYPSYN-BPROTEIN (tryptophan synthase, β subunit)
             0.9583 0.8856 EG10075 (aroC) AROC-MONOMER (AroC)
             0.7350 0.3891 EG10073 (aroA) AROA-MONOMER (3-phosphoshikimate-1-carboxyvinyltransferase)
             0.4390 0.2283 EG10082 (aroL) AROL-MONOMER (shikimate kinase II)
             0.4057 0.1119 EG10081 (aroK) AROK-MONOMER (shikimate kinase I)
             0.6581 0.3944 EG10077 (aroE) AROE-MONOMER (shikimate dehydrogenase)
             0.3903 0.3002 EG10076 (aroD) AROD-MONOMER (AroD)
             0.4399 0.1835 EG10074 (aroB) AROB-MONOMER (3-dehydroquinate synthase)
             0.2857 0.0500 EG10079 (aroG) AROG-MONOMER (AroG)
             0.4575 0.0958 EG10080 (aroH) AROH-MONOMER (AroH)
             0.6924 0.4460 EG10078 (aroF) AROF-MONOMER (AroF)
             0.5335 0.1817 EG11234 (ydiB) EG11234-MONOMER (YdiB)
             0.9990 0.9982 EG10261 (entC) ENTC-MONOMER (isochorismate synthase 1)
             0.6282 0.3432 EG10259 (entA) ENTA-MONOMER (EntA)
             0.6083 0.1770 EG10263 (entE) ENTE-MONOMER (EntE)
             0.7477 0.5854 EG10264 (entF) ENTF-PANT (aryl carrier protein / serine activating enzyme)
             0.2228 0.0793 EG10262 (entD) ENTD-MONOMER (phosphopantetheinyl transferase)
             0.3643 0.0501 EG10260 (entB) ENTB-MONOMER (EntB)
             0.2445 0.1400 EG11110 (ybgC) EG11110-MONOMER (esterase/thioesterase)
   *in cand* 0.9996 0.9994 EG11368 (menB) NAPHTHOATE-SYN-MONOMER (MenB)
   *in cand* 0.9996 0.9993 EG12438 (menH) EG12438-MONOMER ((1R,6R)-2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase)
   *in cand* 0.9997 0.9994 EG10579 (menD) MEND-MONOMER (MenD)
   *in cand* 0.9995 0.9993 EG12362 (menF) MENF-MONOMER (MenF)
   *in cand* 0.9995 0.9993 EG11532 (menC) O-SUCCINYLBENZOATE-COA-SYN-MONOMER (o-succinylbenzoate synthase)
   *in cand* 0.9995 0.9993 EG12437 (menE) O-SUCCINYLBENZOATE-COA-LIG-MONOMER (MenE)
             0.9985 0.9978 EG11880 (menA) DMK-MONOMER (1,4-dihydroxy-2-naphthoate octaprenyltransferase)
             0.9277 0.6008 EG11473 (ubiE) 2-OCTAPRENYL-METHOXY-BENZOQ-METH-MONOMER (bifunctional 2-octaprenyl-6-methoxy-1,4-benzoquinone methylase and S-adenosylmethionine:2-DMK methyltransferase)
  All candidate genes found in this pathway
   This pathway has holes



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GENOME CONTEXT INFORMATION:

Each row corresponds to a replicon in an organism, each column to a gene in the candidate. The second column indicates whether the organims was included in the list used to compute the genome context scores or not. Some organisms are not included because they are phylogenetically too similar to others already in the list.
The number in the matrix indicate the position of the homolog of the gene in the replicon. All numbers are relative to the smaller one, which is assigned a position of zero. Two columns with the same number indicate that the two genes matched the same gene in that organism.

Genome browser links for gene clusters

The links below opens a genome browser BioCyc page for each cluster of genes in the target genome. These pages shows the central gene of the cluster in the target genome and its best homolog in the reference genomes, for the genomes that contain homologs for at least 75% of the genes in the group. Only one genome per phylogenetic cluster of organisms is shown, to keep the list smaller.

EG10579 EG11368 EG11532 EG12362 EG12437 EG12438 (centered at EG12438)


ORG:REPLICON:CIRC?\GENE  IN REF LIST  EG12438   EG12437   EG12362   EG11532   EG11368   EG10579   
185/623257/623299/623161/623320/623257/623
AAEO224324:0:Tyes--0---
AAUR290340:2:Tyes--0121725
AAVE397945:0:Tyes-2240--0-
ABAC204669:0:Tyes--2932-0-
ABAU360910:0:Tyes0---2252-
ABOR393595:0:Tyes-0----
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CSP501479:8:Fyes-----0
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CTEP194439:0:Tyes690871
CTET212717:0:Tyes----0-
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KPNE272620:2:Tyes305124
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MMAR402880:1:Tyes--0--358
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NWIN323098:0:Tyes-0--16471739
OANT439375:4:Tyes0-----
OCAR504832:0:Tyes---1503-0
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PMAR167555:0:Tyes-031428427
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REUT381666:1:Tyes----0172
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RMET266264:2:Tyes-0--522-
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RSPH349102:5:Tyes--506-0-
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SACI330779:0:Tyes-7660-196-
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SBOY300268:1:Tyes305124
SCO:2:Fyes037642965---
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SDYS300267:1:Tyes305124
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SSP64471:0:Tyes-11091112-10
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TMAR243274:0:Tyes--0---
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UMET351160:0:Tyes--0---
VCHO:0:Tyes305124
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VEIS391735:1:Tyes-0--2409-
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YPES187410:5:Tno250431
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YPES377628:2:Tno305124
YPES386656:2:Tno305124
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ZMOB264203:0:Tyes--0---



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