CANDIDATE ID: 418

CANDIDATE ID: 418

NUMBER OF GENES: 6
AVERAGE SCORE:    9.9981087e-1 (range=[0.0,1.0])
AVERAGE MINIMUM BLAST P-VAL:   2.6666667e-44

Gene List
List of organisms containing most genes from the group
    Phylogenetic tree highlighting these organisms (opens new page)
List of organisms containing very few or no genes from the group
List of organisms enriched for group
List of organisms depleted for group
Phylogenetic profile similarity with known pathways
Pairwise genome context scores
Pairwise Blast scores
Pathway or protein complex matches in target organism
Genome context matrix
    Genes and their orthologs in genome browser BioCyc pages



GENE LIST:

- G6142 (yagG) (b0270)
   Products of gene:
     - B0270-MONOMER (YagG GPH Transporter)

- EG11842 (yihP) (b3877)
   Products of gene:
     - YIHP-MONOMER (YihP GPH transporter)

- EG11841 (yihO) (b3876)
   Products of gene:
     - YIHO-MONOMER (YihO GPH transporter)

- EG11686 (yicJ) (b3657)
   Products of gene:
     - YICJ-MONOMER (YicJ GPH transporter)

- EG11658 (uidB) (b1616)
   Products of gene:
     - UIDB-MONOMER (UidB glucuronides GPH transporter)
       Reactions:
        a glucoronide[periplasmic space] + H+[periplasmic space]  ->  a glucoronide[cytosol] + H+[cytosol]

- EG10578 (melB) (b4120)
   Products of gene:
     - MELB-MONOMER (MelB GPH transporter)
       Reactions:
        Li+[periplasmic space] + melibiose[periplasmic space]  ->  Li+[cytosol] + melibiose[cytosol]



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ORGANISMS CONTAINING AT LEAST 5 GENES FROM THE GROUP:

Total number of orgs: 165
Effective number of orgs (counting one per cluster within 468 clusters): 115

Organism list
Homologs in each organism in the list
Features enriched in organism list


Follow (ncbi) link, when present, to find the set of organism features for each organism
Org ID  Org Name  # genes in group found in org  
YPSE349747 ncbi Yersinia pseudotuberculosis IP 317586
YPSE273123 ncbi Yersinia pseudotuberculosis IP 329536
YPES386656 ncbi Yersinia pestis Pestoides F6
YPES377628 ncbi Yersinia pestis Nepal5166
YPES360102 ncbi Yersinia pestis Antiqua6
YPES349746 ncbi Yersinia pestis Angola6
YPES214092 ncbi Yersinia pestis CO926
YPES187410 ncbi Yersinia pestis KIM 106
XORY360094 ncbi Xanthomonas oryzae pv. oryzae PXO99A6
XORY342109 ncbi Xanthomonas oryzae pv. oryzae MAFF 3110186
XORY291331 ncbi Xanthomonas oryzae pv. oryzae KACC103316
XCAM487884 Xanthomonas campestris pv. paulliniae6
XCAM316273 ncbi Xanthomonas campestris pv. vesicatoria str. 85-106
XCAM314565 ncbi Xanthomonas campestris pv. campestris str. 80046
XCAM190485 ncbi Xanthomonas campestris pv. campestris str. ATCC 339136
XAXO190486 ncbi Xanthomonas axonopodis pv. citri str. 3066
VVUL216895 ncbi Vibrio vulnificus CMCP66
VVUL196600 ncbi Vibrio vulnificus YJ0166
VPAR223926 ncbi Vibrio parahaemolyticus RIMD 22106336
TTUR377629 ncbi Teredinibacter turnerae T79016
TTHE300852 ncbi Thermus thermophilus HB85
TTEN273068 ncbi Thermoanaerobacter tengcongensis MB46
TSP1755 Thermoanaerobacter sp.5
TLET416591 ncbi Thermotoga lettingae TMO6
TERY203124 ncbi Trichodesmium erythraeum IMS1016
TELO197221 ncbi Thermosynechococcus elongatus BP-16
TDEN243275 ncbi Treponema denticola ATCC 354056
STYP99287 ncbi Salmonella enterica enterica serovar Typhimurium str. LT26
STHE322159 ncbi Streptococcus thermophilus LMD-95
STHE299768 ncbi Streptococcus thermophilus CNRZ10665
STHE264199 ncbi Streptococcus thermophilus LMG 183115
SSP94122 ncbi Shewanella sp. ANA-36
SSP84588 ncbi Synechococcus sp. WH 81025
SSP64471 ncbi Synechococcus sp. CC93116
SSP321332 ncbi Synechococcus sp. JA-2-3Ba(2-13)6
SSP321327 ncbi Synechococcus sp. JA-3-3Ab6
SSP1148 ncbi Synechocystis sp. PCC 68036
SSON300269 ncbi Shigella sonnei Ss0466
SSAP342451 ncbi Staphylococcus saprophyticus saprophyticus ATCC 153056
SPRO399741 ncbi Serratia proteamaculans 5686
SMAR399550 ncbi Staphylothermus marinus F16
SHIGELLA ncbi Shigella flexneri 2a str. 2457T6
SHAE279808 ncbi Staphylococcus haemolyticus JCSC14356
SFLE373384 ncbi Shigella flexneri 5 str. 84016
SFLE198214 ncbi Shigella flexneri 2a str. 3016
SENT454169 ncbi Salmonella enterica enterica serovar Heidelberg str. SL4766
SENT321314 ncbi Salmonella enterica enterica serovar Choleraesuis str. SC-B676
SENT295319 ncbi Salmonella enterica enterica serovar Paratyphi A str. ATCC 91506
SENT220341 ncbi Salmonella enterica enterica serovar Typhi str. CT186
SENT209261 ncbi Salmonella enterica enterica serovar Typhi str. Ty26
SELO269084 ncbi Synechococcus elongatus PCC 63016
SDYS300267 ncbi Shigella dysenteriae Sd1976
SDEN318161 ncbi Shewanella denitrificans OS2176
SDEG203122 ncbi Saccharophagus degradans 2-406
SBOY300268 ncbi Shigella boydii Sb2276
SBAL402882 ncbi Shewanella baltica OS1856
SBAL399599 ncbi Shewanella baltica OS1956
SALA317655 ncbi Sphingopyxis alaskensis RB22565
SAGA211110 ncbi Streptococcus agalactiae NEM3165
SAGA205921 ncbi Streptococcus agalactiae A9095
RSP357808 ncbi Roseiflexus sp. RS-16
RRUB269796 ncbi Rhodospirillum rubrum ATCC 111705
RCAS383372 ncbi Roseiflexus castenholzii DSM 139415
PRUM264731 ncbi Prevotella ruminicola 236
PPRO298386 ncbi Photobacterium profundum SS96
PPEN278197 ncbi Pediococcus pentosaceus ATCC 257456
PMOB403833 ncbi Petrotoga mobilis SJ955
PMAR93060 ncbi Prochlorococcus marinus MIT 92155
PMAR74547 ncbi Prochlorococcus marinus MIT 93136
PMAR74546 ncbi Prochlorococcus marinus MIT 93126
PMAR59920 ncbi Prochlorococcus marinus NATL2A5
PMAR167555 ncbi Prochlorococcus marinus NATL1A5
PMAR167546 ncbi Prochlorococcus marinus MIT 93015
PMAR167542 ncbi Prochlorococcus marinus MIT 95156
PMAR167540 Prochlorococcus marinus pastoris MED4ax6
PMAR167539 ncbi Prochlorococcus marinus marinus CCMP13755
PMAR146891 ncbi Prochlorococcus marinus AS96016
PDIS435591 ncbi Parabacteroides distasonis ATCC 85036
PATL342610 ncbi Pseudoalteromonas atlantica T6c6
PACN267747 ncbi Propionibacterium acnes KPA1712026
NSP103690 ncbi Nostoc sp. PCC 71206
NFAR247156 ncbi Nocardia farcinica IFM 101526
MSUC221988 ncbi Mannheimia succiniciproducens MBEL55E6
MSP400668 ncbi Marinomonas sp. MWYL16
MMAR394221 ncbi Maricaulis maris MCS106
MAER449447 ncbi Microcystis aeruginosa NIES-8436
LWEL386043 ncbi Listeria welshimeri serovar 6b str. SLCC53346
LSAK314315 ncbi Lactobacillus sakei sakei 23K6
LREU557436 ncbi Lactobacillus reuteri DSM 200166
LPLA220668 ncbi Lactobacillus plantarum WCFS16
LMES203120 ncbi Leuconostoc mesenteroides mesenteroides ATCC 82936
LLAC272623 ncbi Lactococcus lactis lactis Il14036
LLAC272622 ncbi Lactococcus lactis cremoris SK115
LJOH257314 ncbi Lactobacillus johnsonii NCC 5336
LHEL405566 ncbi Lactobacillus helveticus DPC 45716
LDEL390333 ncbi Lactobacillus delbrueckii bulgaricus ATCC 118426
LDEL321956 ncbi Lactobacillus delbrueckii bulgaricus ATCC BAA-3655
LCAS321967 ncbi Lactobacillus casei ATCC 3346
LBRE387344 ncbi Lactobacillus brevis ATCC 3676
LBIF456481 ncbi Leptospira biflexa serovar Patoc strain Patoc 1 (Paris)6
LBIF355278 ncbi Leptospira biflexa serovar Patoc strain Patoc 1 (Ames)6
LACI272621 ncbi Lactobacillus acidophilus NCFM6
KPNE272620 ncbi Klebsiella pneumoniae pneumoniae MGH 785786
HSOM228400 ncbi Haemophilus somnus 23366
HSOM205914 ncbi Haemophilus somnus 129PT6
HNEP81032 Hyphomonas neptunium6
GVIO251221 ncbi Gloeobacter violaceus PCC 74216
FTUL401614 ncbi Francisella novicida U1125
FNUC190304 ncbi Fusobacterium nucleatum nucleatum ATCC 255865
FNOD381764 ncbi Fervidobacterium nodosum Rt17-B15
FJOH376686 ncbi Flavobacterium johnsoniae UW1016
ESP42895 Enterobacter sp.6
ELIT314225 ncbi Erythrobacter litoralis HTCC25946
EFER585054 ncbi Escherichia fergusonii ATCC 354696
ECOO157 ncbi Escherichia coli O157:H7 EDL9336
ECOL83334 Escherichia coli O157:H76
ECOL585397 ncbi Escherichia coli ED1a6
ECOL585057 ncbi Escherichia coli IAI396
ECOL585056 ncbi Escherichia coli UMN0266
ECOL585055 ncbi Escherichia coli 559896
ECOL585035 ncbi Escherichia coli S886
ECOL585034 ncbi Escherichia coli IAI16
ECOL481805 ncbi Escherichia coli ATCC 87396
ECOL469008 ncbi Escherichia coli BL21(DE3)6
ECOL439855 ncbi Escherichia coli SMS-3-56
ECOL413997 ncbi Escherichia coli B str. REL6066
ECOL409438 ncbi Escherichia coli SE116
ECOL405955 ncbi Escherichia coli APEC O16
ECOL364106 ncbi Escherichia coli UTI896
ECOL362663 ncbi Escherichia coli 5366
ECOL331111 ncbi Escherichia coli E24377A6
ECOL316407 ncbi Escherichia coli K-12 substr. W31106
ECOL199310 ncbi Escherichia coli CFT0736
ECAR218491 ncbi Pectobacterium atrosepticum SCRI10436
DOLE96561 ncbi Desulfococcus oleovorans Hxd36
DHAF138119 ncbi Desulfitobacterium hafniense Y516
CSP78 Caulobacter sp.6
CSAL290398 ncbi Chromohalobacter salexigens DSM 30436
CPSY167879 ncbi Colwellia psychrerythraea 34H6
CPHY357809 ncbi Clostridium phytofermentans ISDg6
CPER289380 ncbi Clostridium perfringens SM1016
CPER195103 ncbi Clostridium perfringens ATCC 131246
CPER195102 ncbi Clostridium perfringens 136
CJAP155077 Cellvibrio japonicus6
CEFF196164 ncbi Corynebacterium efficiens YS-3146
CDIF272563 ncbi Clostridium difficile 6306
CBOT536232 ncbi Clostridium botulinum A2 str. Kyoto6
CBOT498213 ncbi Clostridium botulinum B1 str. Okra6
CBOT441772 ncbi Clostridium botulinum F str. Langeland6
CBOT441771 ncbi Clostridium botulinum A str. Hall6
CBOT441770 ncbi Clostridium botulinum A str. ATCC 193976
CBOT36826 Clostridium botulinum A6
CBEI290402 ncbi Clostridium beijerinckii NCIMB 80526
CAULO ncbi Caulobacter crescentus CB156
CACE272562 ncbi Clostridium acetobutylicum ATCC 8246
BSUB ncbi Bacillus subtilis subtilis 1686
BPUM315750 ncbi Bacillus pumilus SAFR-0326
BLON206672 ncbi Bifidobacterium longum NCC27056
BLIC279010 ncbi Bacillus licheniformis ATCC 145806
BFRA295405 ncbi Bacteroides fragilis YCH466
BFRA272559 ncbi Bacteroides fragilis NCTC 93436
BAMY326423 ncbi Bacillus amyloliquefaciens FZB426
AVAR240292 ncbi Anabaena variabilis ATCC 294136
AMET293826 ncbi Alkaliphilus metalliredigens QYMF6
AMAR329726 ncbi Acaryochloris marina MBIC110176


Names of the homologs of the genes in the group in each of these orgs
  G6142   EG11842   EG11841   EG11686   EG11658   EG10578   
YPSE349747 YPSIP31758_0709YPSIP31758_0709YPSIP31758_0709YPSIP31758_0709YPSIP31758_0709YPSIP31758_0709
YPSE273123 YPTB3268YPTB3268YPTB3268YPTB3268YPTB3268YPTB3268
YPES386656 YPDSF_0523YPDSF_0523YPDSF_0523YPDSF_0523YPDSF_0523YPDSF_0523
YPES377628 YPN_3193YPN_3193YPN_3193YPN_3193YPN_3193YPN_3193
YPES360102 YPA_0269YPA_0269YPA_0269YPA_0269YPA_0269YPA_0269
YPES349746 YPANGOLA_A0195YPANGOLA_A0195YPANGOLA_A0195YPANGOLA_A0195YPANGOLA_A0195YPANGOLA_A0195
YPES214092 YPO0995YPO0995YPO0995YPO0995YPO0995YPO0995
YPES187410 Y3386Y3386Y3386Y3386Y3386Y3386
XORY360094 XOOORF_5061XOOORF_5061XOOORF_5061XOOORF_5061XOOORF_5061XOOORF_5061
XORY342109 XOO0305XOO0305XOO0305XOO0305XOO0305XOO0305
XORY291331 XOO0333XOO0333XOO0333XOO0333XOO0333XOO0333
XCAM487884 XCC-B100_4333XCC-B100_4279XCC-B100_4279XCC-B100_4279XCC-B100_4279XCC-B100_4279
XCAM316273 XCAORF_0170XCAORF_0170XCAORF_0170XCAORF_0170XCAORF_0170XCAORF_0170
XCAM314565 XC_4213XC_4169XC_4169XC_4169XC_4169XC_4169
XCAM190485 XCC4121XCC4078XCC4078XCC4078XCC4078XCC4078
XAXO190486 XAC4196XAC4196XAC4196XAC4196XAC4196XAC4196
VVUL216895 VV2_1332VV2_1332VV2_1332VV2_1332VV2_1332VV2_1332
VVUL196600 VVA0167VVA0167VVA0167VVA0167VVA0167VVA0167
VPAR223926 VP2394VP2394VP2394VP2394VP2394VP2394
TTUR377629 TERTU_1420TERTU_0850TERTU_2765TERTU_0850TERTU_0850TERTU_0850
TTHE300852 TTHB030TTHB030TTHB036TTHB036TTHB030
TTEN273068 TTE2458TTE1932TTE1932TTE1932TTE1932TTE1932
TSP1755 TETH514_0679TETH514_0679TETH514_0679TETH514_0679TETH514_0679
TLET416591 TLET_0046TLET_0046TLET_0046TLET_0046TLET_0046TLET_0046
TERY203124 TERY_3858TERY_3858TERY_3858TERY_3858TERY_3858TERY_3858
TELO197221 TLR1521TLR1521TLR1521TLR1521TLR1521TLR1521
TDEN243275 TDE_1454TDE_1454TDE_1454TDE_1454TDE_1454TDE_1454
STYP99287 STM3750STM4018STM4018STM3750STM4017STM4299
STHE322159 STER_1367STER_1367STER_1367STER_1367STER_1367
STHE299768 STR1398STR1398STR1398STR1398STR1398
STHE264199 STU1398STU1398STU1398STU1398STU1398
SSP94122 SHEWANA3_2081SHEWANA3_2081SHEWANA3_2081SHEWANA3_2081SHEWANA3_2081SHEWANA3_2081
SSP84588 SYNW0583OR2038SYNW0583OR2038SYNW0583OR2038SYNW0583OR2038SYNW0583OR2038
SSP64471 GSYN2332GSYN2332GSYN2332GSYN2332GSYN2332GSYN2332
SSP321332 CYB_0528CYB_0528CYB_0528CYB_0528CYB_0528CYB_0528
SSP321327 CYA_2141CYA_2141CYA_2141CYA_2141CYA_2141CYA_2141
SSP1148 SLL1374SLL1374SLL1374SLL1374SLL1374SLL1374
SSON300269 SSO_3746SSO_1544SSO_1544SSO_3746SSO_1544SSO_3746
SSAP342451 SSP0104SSP0104SSP0104SSP0104SSP0104SSP0104
SPRO399741 SPRO_4014SPRO_4014SPRO_4014SPRO_4014SPRO_4014SPRO_4014
SMAR399550 SMAR_0710SMAR_0710SMAR_0710SMAR_0710SMAR_0710SMAR_0710
SHIGELLA MELBYIHOYIHOMELBYIHOMELB
SHAE279808 SH2649SH2649SH2649SH2649SH2649SH2649
SFLE373384 SFV_3954SFV_3623SFV_3623SFV_3954SFV_3622SFV_4110
SFLE198214 AAN45528.1AAN45384.1AAN45383.1AAN45528.1AAN45383.1AAN45528.1
SENT454169 SEHA_C4076SEHA_C4340SEHA_C4340SEHA_C4076SEHA_C4340SEHA_C4645
SENT321314 SCH_3674SCH_3909SCH_3909SCH_3674SCH_3908SCH_4178
SENT295319 SPA3601SPA3859SPA3859SPA3601SPA3858SPA4117
SENT220341 STY4043STY3861STY3861STY4043STY3861STY4498
SENT209261 T3769T3604T3604T3769T3604T4206
SELO269084 SYC0951_DSYC0951_DSYC0951_DSYC0951_DSYC0951_DSYC0951_D
SDYS300267 SDY_1835SDY_1835SDY_1835SDY_1835SDY_1835SDY_1835
SDEN318161 SDEN_2608SDEN_2608SDEN_2608SDEN_2608SDEN_2608SDEN_2608
SDEG203122 SDE_1395SDE_1395SDE_1395SDE_1395SDE_2284SDE_1395
SBOY300268 SBO_3720SBO_1520SBO_1520SBO_3720SBO_1520SBO_3720
SBAL402882 SHEW185_1182SHEW185_1182SHEW185_1182SHEW185_1182SHEW185_1182SHEW185_1182
SBAL399599 SBAL195_1215SBAL195_1215SBAL195_1215SBAL195_1215SBAL195_1215SBAL195_1215
SALA317655 SALA_3075SALA_3075SALA_3075SALA_3075SALA_3075
SAGA211110 GBS0669GBS0669GBS0669GBS0669GBS0669
SAGA205921 SAK_0822SAK_0822SAK_0822SAK_0822SAK_0822
RSP357808 ROSERS_1071ROSERS_1071ROSERS_1071ROSERS_1071ROSERS_1071ROSERS_1071
RRUB269796 RRU_A0726RRU_A0726RRU_A0726RRU_A0726RRU_A0726
RCAS383372 RCAS_2191RCAS_2191RCAS_2191RCAS_2191RCAS_2191
PRUM264731 GFRORF2598GFRORF2598GFRORF1724GFRORF2598GFRORF2598GFRORF2598
PPRO298386 PBPRA0458PBPRB0259PBPRB0259PBPRA0458PBPRA0458PBPRB0259
PPEN278197 PEPE_0185PEPE_0185PEPE_0185PEPE_0185PEPE_0185PEPE_0185
PMOB403833 PMOB_0290PMOB_0290PMOB_0290PMOB_0290PMOB_0290
PMAR93060 P9215_15521P9215_15521P9215_15521P9215_15521P9215_15521
PMAR74547 PMT1398PMT1398PMT1398PMT1398PMT1398PMT1398
PMAR74546 PMT9312_1421PMT9312_1421PMT9312_1421PMT9312_1421PMT9312_1421PMT9312_1421
PMAR59920 PMN2A_0894PMN2A_0894PMN2A_0894PMN2A_0894PMN2A_0894
PMAR167555 NATL1_17501NATL1_17501NATL1_17501NATL1_17501NATL1_17501
PMAR167546 P9301ORF_1538P9301ORF_1538P9301ORF_1538P9301ORF_1538P9301ORF_1538
PMAR167542 P9515ORF_1552P9515ORF_1552P9515ORF_1552P9515ORF_1552P9515ORF_1552P9515ORF_1552
PMAR167540 PMM1323PMM1323PMM1323PMM1323PMM1323PMM1323
PMAR167539 PRO_1404PRO_1404PRO_1404PRO_1404PRO_1404
PMAR146891 A9601_15231A9601_15231A9601_15231A9601_15231A9601_15231A9601_15231
PDIS435591 BDI_0058BDI_0058BDI_0058BDI_0058BDI_0058BDI_0058
PATL342610 PATL_3275PATL_3275PATL_3275PATL_3275PATL_3275PATL_3275
PACN267747 PPA2331PPA2331PPA2331PPA2331PPA2331PPA2331
NSP103690 ALR3705ALR3705ALR3705ALR3705ALR3705ALR3705
NFAR247156 NFA34010NFA34010NFA34010NFA34010NFA34010NFA34010
MSUC221988 MS1409MS1409MS1409MS1409MS1409MS1228
MSP400668 MMWYL1_1614MMWYL1_1614MMWYL1_1614MMWYL1_1614MMWYL1_1614MMWYL1_1614
MMAR394221 MMAR10_2719MMAR10_2719MMAR10_2719MMAR10_2697MMAR10_2697MMAR10_2719
MAER449447 MAE_37730MAE_37730MAE_37730MAE_37730MAE_37730MAE_37730
LWEL386043 LWE0242LWE0242LWE0242LWE0242LWE0242LWE0242
LSAK314315 LSA0185LSA0185LSA0185LSA0185LSA0185LSA0185
LREU557436 LREU_1086LREU_1086LREU_1086LREU_1768LREU_1086LREU_1768
LPLA220668 LP_0975LP_0331LP_0331LP_0975LP_0331LP_3486
LMES203120 LEUM_1245LEUM_1245LEUM_1245LEUM_1245LEUM_1245LEUM_0880
LLAC272623 L0233L0233L0233L0233L0233L0233
LLAC272622 LACR_2246LACR_2246LACR_2246LACR_2246LACR_2246
LJOH257314 LJ_0857LJ_0260LJ_0857LJ_0857LJ_0260LJ_0260
LHEL405566 LHV_1543LHV_1543LHV_1543LHV_1543LHV_1543LHV_1543
LDEL390333 LDB1202LDB1202LDB1202LDB1202LDB1202LDB1202
LDEL321956 LBUL_1115LBUL_1115LBUL_1115LBUL_1115LBUL_1115
LCAS321967 LSEI_0578LSEI_0578LSEI_0578LSEI_0578LSEI_0578LSEI_0578
LBRE387344 LVIS_0463LVIS_0148LVIS_0148LVIS_0463LVIS_0463LVIS_0463
LBIF456481 LEPBI_I0592LEPBI_I0592LEPBI_I0592LEPBI_I0592LEPBI_I0592LEPBI_I0592
LBIF355278 LBF_0571LBF_0571LBF_0571LBF_0571LBF_0571LBF_0571
LACI272621 LBA1463LBA1463LBA1463LBA1463LBA1463LBA1463
KPNE272620 GKPORF_B2856GKPORF_B0982GKPORF_B0982GKPORF_B3380GKPORF_B4396GKPORF_B3865
HSOM228400 HSM_0410HSM_0410HSM_0410HSM_0410HSM_0410HSM_0410
HSOM205914 HS_1601HS_1601HS_1601HS_1601HS_1601HS_1601
HNEP81032 HNE_2445HNE_2445HNE_2445HNE_2445HNE_2445HNE_2445
GVIO251221 GLL4250GLL4250GLL4250GLL4250GLL4250GLL4250
FTUL401614 FTN_0910FTN_0910FTN_0910FTN_0910FTN_0910
FNUC190304 FN0222FN0222FN0222FN0222FN0222
FNOD381764 FNOD_1344FNOD_1344FNOD_1344FNOD_1344FNOD_1344
FJOH376686 FJOH_4954FJOH_4954FJOH_4954FJOH_4954FJOH_4954FJOH_4954
ESP42895 ENT638_0456ENT638_0456ENT638_0070ENT638_0070ENT638_0657ENT638_0070
ELIT314225 ELI_08420ELI_08420ELI_08420ELI_08420ELI_08420ELI_08420
EFER585054 EFER_3950EFER_3950EFER_3950EFER_3950EFER_3950EFER_3950
ECOO157 YICJYIHPYIHPYICJUIDBMELB
ECOL83334 ECS4533ECS4799ECS4799ECS4533ECS2323ECS5102
ECOL585397 ECED1_4350ECED1_4576ECED1_4576ECED1_4350ECED1_1815ECED1_4350
ECOL585057 ECIAI39_4187ECIAI39_3124ECIAI39_3124ECIAI39_4187ECIAI39_1442ECIAI39_4544
ECOL585056 ECUMN_4175ECUMN_4404ECUMN_4404ECUMN_4175ECUMN_1905ECUMN_4652
ECOL585055 EC55989_4124EC55989_1782EC55989_1782EC55989_4124EC55989_1782EC55989_4611
ECOL585035 ECS88_4081ECS88_1662ECS88_1662ECS88_4081ECS88_1662ECS88_4081
ECOL585034 ECIAI1_3831ECIAI1_4077ECIAI1_4077ECIAI1_3831ECIAI1_1667ECIAI1_4350
ECOL481805 ECOLC_0054ECOLC_0054ECOLC_0054ECOLC_0054ECOLC_0054ECOLC_3907
ECOL469008 ECBD_0067ECBD_4151ECBD_4151ECBD_0067ECBD_2029ECBD_3911
ECOL439855 ECSMS35_4000ECSMS35_4262ECSMS35_4262ECSMS35_4000ECSMS35_1583ECSMS35_4586
ECOL413997 ECB_03515ECB_03762ECB_03762ECB_03515ECB_01585ECB_03991
ECOL409438 ECSE_3940ECSE_4160ECSE_4160ECSE_3940ECSE_1737ECSE_4418
ECOL405955 APECO1_2796APECO1_699APECO1_699APECO1_2796APECO1_699APECO1_2796
ECOL364106 UTI89_C4210UTI89_C1804UTI89_C1804UTI89_C4210UTI89_C1804UTI89_C4210
ECOL362663 ECP_3763ECP_1560ECP_1560ECP_3763ECP_1560ECP_3763
ECOL331111 ECE24377A_4161ECE24377A_4400ECE24377A_4400ECE24377A_4161ECE24377A_1824ECE24377A_4674
ECOL316407 ECK0271:JW0263:B0270ECK3869:JW5852:B3876ECK3869:JW5852:B3876ECK3647:JW5939:B3657ECK1611:JW1608:B1616ECK4113:JW4081:B4120
ECOL199310 C4490C2008C2008C4490C2008C4490
ECAR218491 ECA3792ECA3792ECA3792ECA3792ECA3792ECA3792
DOLE96561 DOLE_0353DOLE_0353DOLE_0353DOLE_0353DOLE_0353DOLE_0353
DHAF138119 DSY1272DSY1272DSY1272DSY1272DSY1272DSY1272
CSP78 CAUL_0430CAUL_1919CAUL_2614CAUL_1919CAUL_1919CAUL_2614
CSAL290398 CSAL_1144CSAL_1144CSAL_1144CSAL_1144CSAL_1144CSAL_1144
CPSY167879 CPS_3732CPS_3732CPS_3732CPS_3732CPS_3732CPS_3708
CPHY357809 CPHY_1935CPHY_1935CPHY_1935CPHY_1935CPHY_1935CPHY_1935
CPER289380 CPR_0748CPR_0748CPR_0748CPR_0748CPR_0748CPR_0748
CPER195103 CPF_0733CPF_0764CPF_0764CPF_0733CPF_0764CPF_0764
CPER195102 CPE0153CPE0769CPE0153CPE0769CPE0153CPE0769
CJAP155077 CJA_3013CJA_3013CJA_3013CJA_3013CJA_0848CJA_3013
CEFF196164 CE2381CE2381CE2381CE2381CE2381CE2381
CDIF272563 CD0034CD0034CD0034CD0034CD0034CD0034
CBOT536232 CLM_1352CLM_1352CLM_1352CLM_1352CLM_1352CLM_1352
CBOT498213 CLD_3369CLD_3369CLD_3369CLD_3369CLD_3369CLD_3369
CBOT441772 CLI_1282CLI_1282CLI_1282CLI_1282CLI_1282CLI_1282
CBOT441771 CLC_1241CLC_1241CLC_1241CLC_1241CLC_1241CLC_1241
CBOT441770 CLB_1229CLB_1229CLB_1229CLB_1229CLB_1229CLB_1229
CBOT36826 CBO1199CBO1199CBO1199CBO1199CBO1199CBO1199
CBEI290402 CBEI_4125CBEI_1835CBEI_1835CBEI_4125CBEI_4125CBEI_4125
CAULO CC3030CC1748CC1748CC1748CC1748CC1748
CACE272562 CAC3451CAC0694CAC0694CAC3451CAC3451CAC0694
BSUB BSU17570BSU12310BSU12310BSU17570BSU17570BSU06160
BPUM315750 BPUM_1832BPUM_1832BPUM_1832BPUM_1832BPUM_1832BPUM_1832
BLON206672 BL0976BL0976BL0976BL0976BL0976BL0976
BLIC279010 BL00709BL00709BL00709BL00709BL00709BL00709
BFRA295405 BF0848BF0848BF0848BF0848BF0848BF0848
BFRA272559 BF0773BF0773BF0773BF0773BF0773BF0773
BAMY326423 RBAM_017320RBAM_012390RBAM_012390RBAM_017320RBAM_017320RBAM_006550
AVAR240292 AVA_3583AVA_3583AVA_3583AVA_3583AVA_3583AVA_3583
AMET293826 AMET_2094AMET_2089AMET_2089AMET_2089AMET_2089AMET_2089
AMAR329726 AM1_3342AM1_3342AM1_3342AM1_3342AM1_3342AM1_3342


Organism features enriched in list (features available for 156 out of the 165 orgs in the list)
Feature    Pvalue       Num occurrences in list  Total num occurrences  
Arrangment:Pairs 0.000017348112
Arrangment:Singles 0.000096896286
Disease:Botulism 0.001308155
Disease:Bubonic_plague 0.000341766
Disease:Dysentery 0.000341766
Disease:Gastroenteritis 0.00017901013
Endospores:No 0.003990244211
GC_Content_Range4:40-60 4.908e-683224
GC_Content_Range4:60-100 0.000031121145
GC_Content_Range7:40-50 0.007570741117
GC_Content_Range7:50-60 0.000662442107
GC_Content_Range7:60-70 0.000119020134
Genome_Size_Range5:0-2 3.346e-621155
Genome_Size_Range5:4-6 8.394e-1080184
Genome_Size_Range9:1-2 0.000825721128
Genome_Size_Range9:4-5 0.00021664096
Genome_Size_Range9:5-6 0.00002004088
Habitat:Host-associated 0.007211844206
Habitat:Multiple 0.009008358178
Motility:No 0.001238227151
Motility:Yes 0.004703184267
Oxygen_Req:Aerobic 0.000010629185
Oxygen_Req:Facultative 7.122e-881201
Shape:Rod 5.156e-7118347



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ORGANISMS CONTAINING AT MOST 1 GENES FROM THE GROUP:

Total number of orgs: 436
Effective number of orgs (counting one per cluster within 468 clusters): 335

Organism list
Homologs in each organism in the list
Features enriched in organism list


Follow (ncbi) link, when present, to find the set of organism features for each organism
Org ID  Org Name  # genes in group found in org  
ZMOB264203 ncbi Zymomonas mobilis mobilis ZM40
XFAS405440 ncbi Xylella fastidiosa M120
XFAS183190 ncbi Xylella fastidiosa Temecula10
XFAS160492 ncbi Xylella fastidiosa 9a5c0
XAUT78245 ncbi Xanthobacter autotrophicus Py20
WSUC273121 ncbi Wolinella succinogenes DSM 17400
WPIP955 Wolbachia pipientis0
WPIP80849 Wolbachia endosymbiont of Brugia malayi0
VFIS312309 ncbi Vibrio fischeri ES1140
VEIS391735 ncbi Verminephrobacter eiseniae EF01-20
VCHO345073 ncbi Vibrio cholerae O3950
VCHO ncbi Vibrio cholerae O1 biovar El Tor str. N169610
UURE95667 Ureaplasma urealyticum serovar 130
UURE95664 Ureaplasma urealyticum serovar 100
UPAR505682 ncbi Ureaplasma parvum serovar 3 str. ATCC 278150
UMET351160 ncbi uncultured methanogenic archaeon RC-I0
TWHI218496 ncbi Tropheryma whipplei TW08/270
TWHI203267 ncbi Tropheryma whipplei Twist0
TVOL273116 ncbi Thermoplasma volcanium GSS10
TSP28240 Thermotoga sp.0
TROS309801 ncbi Thermomicrobium roseum DSM 51590
TPSE340099 ncbi Thermoanaerobacter pseudethanolicus ATCC 332230
TPET390874 ncbi Thermotoga petrophila RKU-10
TPEN368408 ncbi Thermofilum pendens Hrk 50
TPAL243276 ncbi Treponema pallidum pallidum Nichols0
TMAR243274 ncbi Thermotoga maritima MSB80
TKOD69014 ncbi Thermococcus kodakarensis KOD10
TFUS269800 ncbi Thermobifida fusca YX0
TDEN326298 ncbi Sulfurimonas denitrificans DSM 12510
TDEN292415 ncbi Thiobacillus denitrificans ATCC 252590
TCRU317025 ncbi Thiomicrospira crunogena XCL-20
TACI273075 ncbi Thermoplasma acidophilum DSM 17280
SWOL335541 ncbi Syntrophomonas wolfei wolfei Goettingen0
STOK273063 ncbi Sulfolobus tokodaii 70
STHE292459 ncbi Symbiobacterium thermophilum IAM 148630
SSUI391296 ncbi Streptococcus suis 98HAH330
SSUI391295 ncbi Streptococcus suis 05ZYH330
SSP644076 Silicibacter sp. TrichCH4B0
SSP387093 ncbi Sulfurovum sp. NBC37-10
SSP292414 ncbi Ruegeria sp. TM10400
SSOL273057 ncbi Sulfolobus solfataricus P20
SSED425104 ncbi Shewanella sediminis HAW-EB30
SRUB309807 ncbi Salinibacter ruber DSM 138550
SPYO370554 ncbi Streptococcus pyogenes MGAS107500
SPYO370553 ncbi Streptococcus pyogenes MGAS20960
SPYO370551 ncbi Streptococcus pyogenes MGAS94290
SPYO319701 ncbi Streptococcus pyogenes MGAS61800
SPYO293653 ncbi Streptococcus pyogenes MGAS50050
SPYO286636 ncbi Streptococcus pyogenes MGAS103940
SPYO198466 ncbi Streptococcus pyogenes MGAS3150
SPYO193567 ncbi Streptococcus pyogenes SSI-10
SPYO186103 ncbi Streptococcus pyogenes MGAS82320
SPYO160490 ncbi Streptococcus pyogenes M1 GAS0
SPNE487214 ncbi Streptococcus pneumoniae Hungary19A-60
SPNE487213 ncbi Streptococcus pneumoniae Taiwan19F-140
SPNE171101 ncbi Streptococcus pneumoniae R60
SPNE170187 ncbi Streptococcus pneumoniae G540
SPNE1313 Streptococcus pneumoniae0
SPEA398579 ncbi Shewanella pealeana ATCC 7003450
SONE211586 ncbi Shewanella oneidensis MR-10
SMUT210007 ncbi Streptococcus mutans UA1590
SMEL266834 ncbi Sinorhizobium meliloti 10210
SMED366394 ncbi Sinorhizobium medicae WSM4190
SLOI323850 ncbi Shewanella loihica PV-40
SLAC55218 Ruegeria lacuscaerulensis1
SHAL458817 ncbi Shewanella halifaxensis HAW-EB40
SGOR29390 Streptococcus gordonii Challis0
SGLO343509 ncbi Sodalis glossinidius morsitans0
SFUM335543 ncbi Syntrophobacter fumaroxidans MPOB0
SERY405948 ncbi Saccharopolyspora erythraea NRRL 23381
SEPI176280 ncbi Staphylococcus epidermidis ATCC 122280
SEPI176279 ncbi Staphylococcus epidermidis RP62A0
SCO ncbi Streptomyces coelicolor A3(2)0
SAVE227882 ncbi Streptomyces avermitilis MA-46800
SAUR93062 ncbi Staphylococcus aureus aureus COL0
SAUR93061 ncbi Staphylococcus aureus aureus NCTC 83250
SAUR426430 ncbi Staphylococcus aureus aureus Newman0
SAUR418127 ncbi Staphylococcus aureus aureus Mu30
SAUR367830 Staphylococcus aureus aureus USA3000
SAUR359787 ncbi Staphylococcus aureus aureus JH10
SAUR359786 ncbi Staphylococcus aureus aureus JH90
SAUR282459 ncbi Staphylococcus aureus aureus MSSA4760
SAUR282458 ncbi Staphylococcus aureus aureus MRSA2520
SAUR273036 ncbi Staphylococcus aureus RF1220
SAUR196620 ncbi Staphylococcus aureus aureus MW20
SAUR158879 ncbi Staphylococcus aureus aureus N3150
SAUR158878 ncbi Staphylococcus aureus aureus Mu500
SACI56780 ncbi Syntrophus aciditrophicus SB0
SACI330779 ncbi Sulfolobus acidocaldarius DSM 6390
RXYL266117 ncbi Rubrobacter xylanophilus DSM 99410
RTYP257363 ncbi Rickettsia typhi Wilmington0
RSPH349102 ncbi Rhodobacter sphaeroides ATCC 170250
RSPH349101 ncbi Rhodobacter sphaeroides ATCC 170290
RSPH272943 ncbi Rhodobacter sphaeroides 2.4.10
RSP101510 ncbi Rhodococcus jostii RHA11
RSOL267608 ncbi Ralstonia solanacearum GMI10000
RSAL288705 ncbi Renibacterium salmoninarum ATCC 332090
RRIC452659 ncbi Rickettsia rickettsii Iowa0
RRIC392021 ncbi Rickettsia rickettsii Sheila Smith0
RPRO272947 ncbi Rickettsia prowazekii Madrid E0
RPOM246200 ncbi Ruegeria pomeroyi DSS-30
RPAL316058 ncbi Rhodopseudomonas palustris HaA20
RPAL316057 ncbi Rhodopseudomonas palustris BisB50
RPAL316056 ncbi Rhodopseudomonas palustris BisB180
RPAL316055 ncbi Rhodopseudomonas palustris BisA530
RPAL258594 ncbi Rhodopseudomonas palustris CGA0090
RMET266264 ncbi Ralstonia metallidurans CH340
RMAS416276 ncbi Rickettsia massiliae MTU50
RLEG216596 ncbi Rhizobium leguminosarum bv. viciae 38410
RFER338969 ncbi Rhodoferax ferrireducens T1180
RFEL315456 ncbi Rickettsia felis URRWXCal20
REUT381666 ncbi Ralstonia eutropha H160
REUT264198 ncbi Ralstonia eutropha JMP1340
RETL347834 ncbi Rhizobium etli CFN 420
RDEN375451 ncbi Roseobacter denitrificans OCh 1141
RCON272944 ncbi Rickettsia conorii Malish 70
RCAN293613 ncbi Rickettsia canadensis McKiel0
RBEL391896 ncbi Rickettsia bellii OSU 85-3890
RBEL336407 ncbi Rickettsia bellii RML369-C0
RAKA293614 ncbi Rickettsia akari Hartford0
PTOR263820 ncbi Picrophilus torridus DSM 97900
PTHE370438 ncbi Pelotomaculum thermopropionicum SI0
PSYR223283 ncbi Pseudomonas syringae pv. tomato str. DC30000
PSYR205918 ncbi Pseudomonas syringae pv. syringae B728a0
PSP56811 Psychrobacter sp.0
PSP312153 ncbi Polynucleobacter necessarius asymbioticus QLW-P1DMWA-10
PSP296591 ncbi Polaromonas sp. JS6660
PSP117 Pirellula sp.0
PPUT76869 ncbi Pseudomonas putida GB-10
PPUT351746 ncbi Pseudomonas putida F10
PPUT160488 ncbi Pseudomonas putida KT24400
PMUL272843 ncbi Pasteurella multocida multocida Pm700
PMEN399739 ncbi Pseudomonas mendocina ymp0
PLUT319225 ncbi Chlorobium luteolum DSM 2730
PLUM243265 ncbi Photorhabdus luminescens laumondii TTO10
PISL384616 ncbi Pyrobaculum islandicum DSM 41840
PINT246198 Prevotella intermedia 170
PING357804 ncbi Psychromonas ingrahamii 370
PHOR70601 ncbi Pyrococcus horikoshii OT30
PHAL326442 ncbi Pseudoalteromonas haloplanktis TAC1250
PGIN242619 ncbi Porphyromonas gingivalis W830
PFLU220664 ncbi Pseudomonas fluorescens Pf-50
PFLU216595 ncbi Pseudomonas fluorescens SBW250
PFLU205922 ncbi Pseudomonas fluorescens Pf0-10
PENT384676 ncbi Pseudomonas entomophila L480
PCRY335284 ncbi Psychrobacter cryohalolentis K50
PCAR338963 ncbi Pelobacter carbinolicus DSM 23800
PAST100379 Onion yellows phytoplasma0
PARS340102 ncbi Pyrobaculum arsenaticum DSM 135140
PARC259536 ncbi Psychrobacter arcticus 273-40
PAER208964 ncbi Pseudomonas aeruginosa PAO10
PAER208963 ncbi Pseudomonas aeruginosa UCBPP-PA140
PAER178306 ncbi Pyrobaculum aerophilum IM20
PABY272844 ncbi Pyrococcus abyssi GE50
OTSU357244 ncbi Orientia tsutsugamushi Boryong0
OIHE221109 ncbi Oceanobacillus iheyensis HTE8310
OCAR504832 ncbi Oligotropha carboxidovorans OM50
OANT439375 ncbi Ochrobactrum anthropi ATCC 491880
NWIN323098 ncbi Nitrobacter winogradskyi Nb-2550
NSP387092 ncbi Nitratiruptor sp. SB155-20
NSEN222891 ncbi Neorickettsia sennetsu Miyayama0
NPHA348780 ncbi Natronomonas pharaonis DSM 21600
NOCE323261 ncbi Nitrosococcus oceani ATCC 197070
NMUL323848 ncbi Nitrosospira multiformis ATCC 251960
NMEN374833 ncbi Neisseria meningitidis 0534420
NMEN272831 ncbi Neisseria meningitidis FAM180
NMEN122587 ncbi Neisseria meningitidis Z24910
NMEN122586 ncbi Neisseria meningitidis MC580
NHAM323097 ncbi Nitrobacter hamburgensis X140
NGON242231 ncbi Neisseria gonorrhoeae FA 10900
NEUT335283 ncbi Nitrosomonas eutropha C910
NEUR228410 ncbi Nitrosomonas europaea ATCC 197180
MXAN246197 ncbi Myxococcus xanthus DK 16220
MVAN350058 ncbi Mycobacterium vanbaalenii PYR-10
MTUB419947 ncbi Mycobacterium tuberculosis H37Ra0
MTUB336982 ncbi Mycobacterium tuberculosis F110
MTHE349307 ncbi Methanosaeta thermophila PT0
MTHE264732 ncbi Moorella thermoacetica ATCC 390730
MTHE187420 ncbi Methanothermobacter thermautotrophicus Delta H0
MTBRV ncbi Mycobacterium tuberculosis H37Rv0
MTBCDC ncbi Mycobacterium tuberculosis CDC15510
MSYN262723 ncbi Mycoplasma synoviae 530
MSTA339860 ncbi Methanosphaera stadtmanae DSM 30910
MSP409 Methylobacterium sp.0
MSP266779 ncbi Chelativorans sp. BNC10
MSP189918 ncbi Mycobacterium sp. KMS0
MSP164757 ncbi Mycobacterium sp. JLS0
MSP164756 ncbi Mycobacterium sp. MCS0
MSME246196 ncbi Mycobacterium smegmatis MC2 1551
MSED399549 ncbi Metallosphaera sedula DSM 53480
MPUL272635 ncbi Mycoplasma pulmonis UAB CTIP0
MPNE272634 ncbi Mycoplasma pneumoniae M1290
MPEN272633 ncbi Mycoplasma penetrans HF-20
MMYC272632 ncbi Mycoplasma mycoides mycoides SC str. PG10
MMOB267748 ncbi Mycoplasma mobile 163K0
MMAZ192952 ncbi Methanosarcina mazei Go10
MMAR444158 ncbi Methanococcus maripaludis C60
MMAR426368 ncbi Methanococcus maripaludis C70
MMAR402880 ncbi Methanococcus maripaludis C50
MMAR368407 ncbi Methanoculleus marisnigri JR10
MMAR267377 ncbi Methanococcus maripaludis S20
MMAG342108 ncbi Magnetospirillum magneticum AMB-10
MLOT266835 ncbi Mesorhizobium loti MAFF3030990
MLEP272631 ncbi Mycobacterium leprae TN0
MLAB410358 ncbi Methanocorpusculum labreanum Z0
MKAN190192 ncbi Methanopyrus kandleri AV190
MJAN243232 ncbi Methanocaldococcus jannaschii DSM 26610
MHYO295358 ncbi Mycoplasma hyopneumoniae 2320
MHYO262722 ncbi Mycoplasma hyopneumoniae 74480
MHYO262719 ncbi Mycoplasma hyopneumoniae J0
MHUN323259 ncbi Methanospirillum hungatei JF-10
MGIL350054 ncbi Mycobacterium gilvum PYR-GCK0
MGEN243273 ncbi Mycoplasma genitalium G370
MFLO265311 ncbi Mesoplasma florum L10
MFLA265072 ncbi Methylobacillus flagellatus KT0
MEXT419610 ncbi Methylobacterium extorquens PA10
MCAP340047 ncbi Mycoplasma capricolum capricolum ATCC 273430
MCAP243233 ncbi Methylococcus capsulatus Bath0
MBUR259564 ncbi Methanococcoides burtonii DSM 62420
MBOV410289 ncbi Mycobacterium bovis BCG str. Pasteur 1173P20
MBOV233413 ncbi Mycobacterium bovis AF2122/970
MBAR269797 ncbi Methanosarcina barkeri Fusaro0
MAVI243243 ncbi Mycobacterium avium 1040
MART243272 ncbi Mycoplasma arthritidis 158L3-10
MAQU351348 ncbi Marinobacter aquaeolei VT80
MAEO419665 ncbi Methanococcus aeolicus Nankai-30
MACE188937 ncbi Methanosarcina acetivorans C2A0
MABS561007 ncbi Mycobacterium abscessus ATCC 199770
LXYL281090 ncbi Leifsonia xyli xyli CTCB070
LSPH444177 ncbi Lysinibacillus sphaericus C3-410
LPNE400673 ncbi Legionella pneumophila Corby0
LPNE297246 ncbi Legionella pneumophila Paris0
LPNE297245 ncbi Legionella pneumophila Lens0
LPNE272624 ncbi Legionella pneumophila pneumophila Philadelphia 10
LMON265669 ncbi Listeria monocytogenes 4b F23650
LMON169963 ncbi Listeria monocytogenes EGD-e0
LINT363253 ncbi Lawsonia intracellularis PHE/MN1-000
LINT267671 ncbi Leptospira interrogans serovar Copenhageni str. Fiocruz L1-1300
LINT189518 ncbi Leptospira interrogans serovar Lai str. 566010
LINN272626 ncbi Listeria innocua Clip112620
LGAS324831 ncbi Lactobacillus gasseri ATCC 333230
LBOR355277 ncbi Leptospira borgpetersenii serovar Hardjo-bovis JB1970
LBOR355276 ncbi Leptospira borgpetersenii serovar Hardjo-bovis L5500
KRAD266940 ncbi Kineococcus radiotolerans SRS302160
JSP375286 ncbi Janthinobacterium sp. Marseille0
JSP290400 ncbi Jannaschia sp. CCS10
ILOI283942 ncbi Idiomarina loihiensis L2TR0
IHOS453591 ncbi Ignicoccus hospitalis KIN4/I0
HWAL362976 ncbi Haloquadratum walsbyi DSM 167900
HSP64091 ncbi Halobacterium sp. NRC-10
HSAL478009 ncbi Halobacterium salinarum R10
HPYL85963 ncbi Helicobacter pylori J990
HPYL357544 ncbi Helicobacter pylori HPAG10
HPY ncbi Helicobacter pylori 266950
HMUK485914 ncbi Halomicrobium mukohataei DSM 122860
HMOD498761 ncbi Heliobacterium modesticaldum Ice10
HMAR272569 ncbi Haloarcula marismortui ATCC 430490
HINF71421 ncbi Haemophilus influenzae Rd KW200
HINF374930 ncbi Haemophilus influenzae PittEE0
HINF281310 ncbi Haemophilus influenzae 86-028NP0
HHEP235279 ncbi Helicobacter hepaticus ATCC 514490
HHAL349124 ncbi Halorhodospira halophila SL10
HDUC233412 ncbi Haemophilus ducreyi 35000HP0
HCHE349521 ncbi Hahella chejuensis KCTC 23960
HBUT415426 ncbi Hyperthermus butylicus DSM 54560
HAUR316274 ncbi Herpetosiphon aurantiacus ATCC 237790
HACI382638 ncbi Helicobacter acinonychis Sheeba0
GURA351605 ncbi Geobacter uraniireducens Rf40
GTHE420246 ncbi Geobacillus thermodenitrificans NG80-20
GSUL243231 ncbi Geobacter sulfurreducens PCA0
GOXY290633 ncbi Gluconobacter oxydans 621H0
GMET269799 ncbi Geobacter metallireducens GS-150
GKAU235909 ncbi Geobacillus kaustophilus HTA4260
GFOR411154 ncbi Gramella forsetii KT08030
GBET391165 ncbi Granulibacter bethesdensis CGDNIH10
FTUL458234 ncbi Francisella tularensis holarctica FTNF002-000
FTUL418136 ncbi Francisella tularensis tularensis WY96-34180
FTUL393115 ncbi Francisella tularensis tularensis FSC1980
FTUL393011 ncbi Francisella tularensis holarctica OSU180
FTUL351581 Francisella tularensis holarctica FSC2000
FSUC59374 ncbi Fibrobacter succinogenes succinogenes S850
FSP1855 Frankia sp. EAN1pec0
FSP106370 ncbi Frankia sp. CcI30
FRANT ncbi Francisella tularensis tularensis SCHU S40
FPHI484022 ncbi Francisella philomiragia philomiragia ATCC 250171
FMAG334413 ncbi Finegoldia magna ATCC 293280
FALN326424 ncbi Frankia alni ACN14a0
ERUM302409 ncbi Ehrlichia ruminantium Gardel0
ERUM254945 ncbi Ehrlichia ruminantium Welgevonden0
EFAE226185 ncbi Enterococcus faecalis V5830
ECHA205920 ncbi Ehrlichia chaffeensis Arkansas0
ECAN269484 ncbi Ehrlichia canis Jake0
DVUL882 ncbi Desulfovibrio vulgaris Hildenborough0
DSP255470 ncbi Dehalococcoides sp. CBDB10
DSP216389 ncbi Dehalococcoides sp. BAV10
DSHI398580 ncbi Dinoroseobacter shibae DFL 120
DRED349161 ncbi Desulfotomaculum reducens MI-10
DRAD243230 ncbi Deinococcus radiodurans R10
DPSY177439 ncbi Desulfotalea psychrophila LSv540
DNOD246195 ncbi Dichelobacter nodosus VCS1703A0
DGEO319795 ncbi Deinococcus geothermalis DSM 113000
DETH243164 ncbi Dehalococcoides ethenogenes 1950
DDES207559 ncbi Desulfovibrio desulfuricans desulfuricans G200
DARO159087 ncbi Dechloromonas aromatica RCB0
CVIO243365 ncbi Chromobacterium violaceum ATCC 124720
CVES412965 ncbi Candidatus Vesicomyosocius okutanii HA0
CTRA471473 ncbi Chlamydia trachomatis L2b/UCH-1/proctitis0
CTRA471472 ncbi Chlamydia trachomatis 434/Bu0
CTET212717 ncbi Clostridium tetani E880
CTEP194439 ncbi Chlorobium tepidum TLS0
CSUL444179 ncbi Candidatus Sulcia muelleri GWSS0
CSP501479 Citreicella sp. SE450
CRUT413404 ncbi Candidatus Ruthia magnifica Cm (Calyptogena magnifica)0
CPRO264201 ncbi Candidatus Protochlamydia amoebophila UWE250
CPNE182082 ncbi Chlamydophila pneumoniae TW-1830
CPNE138677 ncbi Chlamydophila pneumoniae J1380
CPNE115713 ncbi Chlamydophila pneumoniae CWL0290
CPNE115711 ncbi Chlamydophila pneumoniae AR390
CPEL335992 ncbi Candidatus Pelagibacter ubique HTCC10620
CNOV386415 ncbi Clostridium novyi NT0
CMUR243161 ncbi Chlamydia muridarum Nigg0
CMIC443906 ncbi Clavibacter michiganensis michiganensis NCPPB 3820
CMIC31964 ncbi Clavibacter michiganensis sepedonicus0
CMET456442 ncbi Candidatus Methanoregula boonei 6A80
CMAQ397948 ncbi Caldivirga maquilingensis IC-1670
CKOR374847 ncbi Candidatus Korarchaeum cryptofilum OPF80
CKLU431943 ncbi Clostridium kluyveri DSM 5550
CJEJ407148 ncbi Campylobacter jejuni jejuni 811160
CJEJ360109 ncbi Campylobacter jejuni doylei 269.970
CJEJ354242 ncbi Campylobacter jejuni jejuni 81-1760
CJEJ195099 ncbi Campylobacter jejuni RM12210
CJEJ192222 ncbi Campylobacter jejuni jejuni NCTC 111680
CJEI306537 ncbi Corynebacterium jeikeium K4110
CHYD246194 ncbi Carboxydothermus hydrogenoformans Z-29010
CHUT269798 ncbi Cytophaga hutchinsonii ATCC 334060
CHOM360107 ncbi Campylobacter hominis ATCC BAA-3810
CGLU196627 ncbi Corynebacterium glutamicum ATCC 130320
CFET360106 ncbi Campylobacter fetus fetus 82-400
CFEL264202 ncbi Chlamydophila felis Fe/C-560
CDIP257309 ncbi Corynebacterium diphtheriae NCTC 131290
CDES477974 ncbi Candidatus Desulforudis audaxviator MP104C0
CCUR360105 ncbi Campylobacter curvus 525.920
CCON360104 ncbi Campylobacter concisus 138260
CCHL340177 ncbi Chlorobium chlorochromatii CaD30
CCAV227941 ncbi Chlamydophila caviae GPIC0
CBUR434922 ncbi Coxiella burnetii Dugway 5J108-1110
CBUR360115 ncbi Coxiella burnetii RSA 3310
CBUR227377 ncbi Coxiella burnetii RSA 4930
CBOT515621 ncbi Clostridium botulinum Ba4 str. 6570
CBOT508765 ncbi Clostridium botulinum B str. Eklund 17B0
CBLO291272 ncbi Candidatus Blochmannia pennsylvanicus BPEN0
CBLO203907 ncbi Candidatus Blochmannia floridanus0
CABO218497 ncbi Chlamydophila abortus S26/30
BXEN266265 ncbi Burkholderia xenovorans LB4000
BWEI315730 ncbi Bacillus weihenstephanensis KBAB40
BVIE269482 ncbi Burkholderia vietnamiensis G40
BTUR314724 ncbi Borrelia turicatae 91E1350
BTRI382640 ncbi Bartonella tribocorum CIP 1054760
BTHU412694 ncbi Bacillus thuringiensis Al Hakam0
BTHU281309 ncbi Bacillus thuringiensis serovar konkukian str. 97-270
BTHE226186 ncbi Bacteroides thetaiotaomicron VPI-54820
BTHA271848 ncbi Burkholderia thailandensis E2640
BSUI470137 ncbi Brucella suis ATCC 234450
BSUI204722 ncbi Brucella suis 13300
BSP376 Bradyrhizobium sp.0
BSP36773 Burkholderia sp.0
BSP107806 ncbi Buchnera aphidicola APS (Acyrthosiphon pisum)0
BQUI283165 ncbi Bartonella quintana Toulouse0
BPSE320373 ncbi Burkholderia pseudomallei 6680
BPSE320372 ncbi Burkholderia pseudomallei 1710b0
BPSE272560 ncbi Burkholderia pseudomallei K962430
BPET94624 Bordetella petrii0
BPER257313 ncbi Bordetella pertussis Tohama I0
BPAR257311 ncbi Bordetella parapertussis 128220
BOVI236 Brucella ovis0
BMEL359391 ncbi Brucella melitensis biovar Abortus 23080
BMEL224914 ncbi Brucella melitensis bv. 1 str. 16M0
BMAL320389 ncbi Burkholderia mallei NCTC 102470
BMAL320388 ncbi Burkholderia mallei SAVP10
BMAL243160 ncbi Burkholderia mallei ATCC 233440
BJAP224911 ncbi Bradyrhizobium japonicum USDA 1100
BHER314723 ncbi Borrelia hermsii DAH0
BHEN283166 ncbi Bartonella henselae Houston-10
BHAL272558 ncbi Bacillus halodurans C-1250
BGAR290434 ncbi Borrelia garinii PBi0
BCLA66692 ncbi Bacillus clausii KSM-K160
BCIC186490 Candidatus Baumannia cicadellinicola0
BCER572264 ncbi Bacillus cereus 03BB1020
BCER405917 Bacillus cereus W0
BCER315749 ncbi Bacillus cytotoxicus NVH 391-980
BCER288681 ncbi Bacillus cereus E33L0
BCER226900 ncbi Bacillus cereus ATCC 145790
BCEN331272 ncbi Burkholderia cenocepacia HI24240
BCEN331271 ncbi Burkholderia cenocepacia AU 10540
BCAN483179 ncbi Brucella canis ATCC 233650
BBUR224326 ncbi Borrelia burgdorferi B310
BBRO257310 ncbi Bordetella bronchiseptica RB500
BBAC360095 ncbi Bartonella bacilliformis KC5830
BAPH372461 ncbi Buchnera aphidicola Cc (Cinara cedri)0
BAPH198804 ncbi Buchnera aphidicola Sg (Schizaphis graminum)0
BANT592021 ncbi Bacillus anthracis A02480
BANT568206 ncbi Bacillus anthracis CDC 6840
BANT261594 ncbi Bacillus anthracis Ames Ancestor0
BANT260799 ncbi Bacillus anthracis Sterne0
BAMB398577 ncbi Burkholderia ambifaria MC40-60
BAMB339670 ncbi Burkholderia ambifaria AMMD0
BAFZ390236 ncbi Borrelia afzelii PKo0
BABO262698 ncbi Brucella abortus bv. 1 str. 9-9410
AYEL322098 ncbi Aster yellows witches-broom phytoplasma AYWB0
AURANTIMONAS Aurantimonas manganoxydans SI85-9A10
ASP76114 ncbi Aromatoleum aromaticum EbN10
ASP62977 ncbi Acinetobacter sp. ADP10
ASP62928 ncbi Azoarcus sp. BH720
ASP232721 ncbi Acidovorax sp. JS421
ASP1667 Arthrobacter sp.0
ASAL382245 ncbi Aeromonas salmonicida salmonicida A4490
APLE434271 ncbi Actinobacillus pleuropneumoniae serovar 3 str. JL030
APLE416269 ncbi Actinobacillus pleuropneumoniae L200
APHA212042 ncbi Anaplasma phagocytophilum HZ0
APER272557 ncbi Aeropyrum pernix K10
AORE350688 ncbi Alkaliphilus oremlandii OhILAs0
ANAE240017 Actinomyces oris MG10
AMAR234826 ncbi Anaplasma marginale St. Maries0
ALAI441768 ncbi Acholeplasma laidlawii PG-8A0
AHYD196024 Aeromonas hydrophila dhakensis0
AFUL224325 ncbi Archaeoglobus fulgidus DSM 43040
AFER243159 ncbi Acidithiobacillus ferrooxidans ATCC 232700
AEHR187272 ncbi Alkalilimnicola ehrlichii MLHE-10
ADEH290397 ncbi Anaeromyxobacter dehalogenans 2CP-C0
ACEL351607 ncbi Acidothermus cellulolyticus 11B0
ACAU438753 ncbi Azorhizobium caulinodans ORS 5710
ABOR393595 ncbi Alcanivorax borkumensis SK20
ABAC204669 ncbi Candidatus Koribacter versatilis Ellin3450
AAVE397945 ncbi Acidovorax citrulli AAC00-10
AAUR290340 ncbi Arthrobacter aurescens TC10
AAEO224324 ncbi Aquifex aeolicus VF50


Names of the homologs of the genes in the group in each of these orgs
  G6142   EG11842   EG11841   EG11686   EG11658   EG10578   
ZMOB264203
XFAS405440
XFAS183190
XFAS160492
XAUT78245
WSUC273121
WPIP955
WPIP80849
VFIS312309
VEIS391735
VCHO345073
VCHO
UURE95667
UURE95664
UPAR505682
UMET351160
TWHI218496
TWHI203267
TVOL273116
TSP28240
TROS309801
TPSE340099
TPET390874
TPEN368408
TPAL243276
TMAR243274
TKOD69014
TFUS269800
TDEN326298
TDEN292415
TCRU317025
TACI273075
SWOL335541
STOK273063
STHE292459
SSUI391296
SSUI391295
SSP644076
SSP387093
SSP292414
SSOL273057
SSED425104
SRUB309807
SPYO370554
SPYO370553
SPYO370551
SPYO319701
SPYO293653
SPYO286636
SPYO198466
SPYO193567
SPYO186103
SPYO160490
SPNE487214
SPNE487213
SPNE171101
SPNE170187
SPNE1313
SPEA398579
SONE211586
SMUT210007
SMEL266834
SMED366394
SLOI323850
SLAC55218 SL1157_1196
SHAL458817
SGOR29390
SGLO343509
SFUM335543
SERY405948 SACE_6972
SEPI176280
SEPI176279
SCO
SAVE227882
SAUR93062
SAUR93061
SAUR426430
SAUR418127
SAUR367830
SAUR359787
SAUR359786
SAUR282459
SAUR282458
SAUR273036
SAUR196620
SAUR158879
SAUR158878
SACI56780
SACI330779
RXYL266117
RTYP257363
RSPH349102
RSPH349101
RSPH272943
RSP101510 RHA1_RO03967
RSOL267608
RSAL288705
RRIC452659
RRIC392021
RPRO272947
RPOM246200
RPAL316058
RPAL316057
RPAL316056
RPAL316055
RPAL258594
RMET266264
RMAS416276
RLEG216596
RFER338969
RFEL315456
REUT381666
REUT264198
RETL347834
RDEN375451 RD1_0695
RCON272944
RCAN293613
RBEL391896
RBEL336407
RAKA293614
PTOR263820
PTHE370438
PSYR223283
PSYR205918
PSP56811
PSP312153
PSP296591
PSP117
PPUT76869
PPUT351746
PPUT160488
PMUL272843
PMEN399739
PLUT319225
PLUM243265
PISL384616
PINT246198
PING357804
PHOR70601
PHAL326442
PGIN242619
PFLU220664
PFLU216595
PFLU205922
PENT384676
PCRY335284
PCAR338963
PAST100379
PARS340102
PARC259536
PAER208964
PAER208963
PAER178306
PABY272844
OTSU357244
OIHE221109
OCAR504832
OANT439375
NWIN323098
NSP387092
NSEN222891
NPHA348780
NOCE323261
NMUL323848
NMEN374833
NMEN272831
NMEN122587
NMEN122586
NHAM323097
NGON242231
NEUT335283
NEUR228410
MXAN246197
MVAN350058
MTUB419947
MTUB336982
MTHE349307
MTHE264732
MTHE187420
MTBRV
MTBCDC
MSYN262723
MSTA339860
MSP409
MSP266779
MSP189918
MSP164757
MSP164756
MSME246196 MSMEG_0896
MSED399549
MPUL272635
MPNE272634
MPEN272633
MMYC272632
MMOB267748
MMAZ192952
MMAR444158
MMAR426368
MMAR402880
MMAR368407
MMAR267377
MMAG342108
MLOT266835
MLEP272631
MLAB410358
MKAN190192
MJAN243232
MHYO295358
MHYO262722
MHYO262719
MHUN323259
MGIL350054
MGEN243273
MFLO265311
MFLA265072
MEXT419610
MCAP340047
MCAP243233
MBUR259564
MBOV410289
MBOV233413
MBAR269797
MAVI243243
MART243272
MAQU351348
MAEO419665
MACE188937
MABS561007
LXYL281090
LSPH444177
LPNE400673
LPNE297246
LPNE297245
LPNE272624
LMON265669
LMON169963
LINT363253
LINT267671
LINT189518
LINN272626
LGAS324831
LBOR355277
LBOR355276
KRAD266940
JSP375286
JSP290400
ILOI283942
IHOS453591
HWAL362976
HSP64091
HSAL478009
HPYL85963
HPYL357544
HPY
HMUK485914
HMOD498761
HMAR272569
HINF71421
HINF374930
HINF281310
HHEP235279
HHAL349124
HDUC233412
HCHE349521
HBUT415426
HAUR316274
HACI382638
GURA351605
GTHE420246
GSUL243231
GOXY290633
GMET269799
GKAU235909
GFOR411154
GBET391165
FTUL458234
FTUL418136
FTUL393115
FTUL393011
FTUL351581
FSUC59374
FSP1855
FSP106370
FRANT
FPHI484022 FPHI_1726
FMAG334413
FALN326424
ERUM302409
ERUM254945
EFAE226185
ECHA205920
ECAN269484
DVUL882
DSP255470
DSP216389
DSHI398580
DRED349161
DRAD243230
DPSY177439
DNOD246195
DGEO319795
DETH243164
DDES207559
DARO159087
CVIO243365
CVES412965
CTRA471473
CTRA471472
CTET212717
CTEP194439
CSUL444179
CSP501479
CRUT413404
CPRO264201
CPNE182082
CPNE138677
CPNE115713
CPNE115711
CPEL335992
CNOV386415
CMUR243161
CMIC443906
CMIC31964
CMET456442
CMAQ397948
CKOR374847
CKLU431943
CJEJ407148
CJEJ360109
CJEJ354242
CJEJ195099
CJEJ192222
CJEI306537
CHYD246194
CHUT269798
CHOM360107
CGLU196627
CFET360106
CFEL264202
CDIP257309
CDES477974
CCUR360105
CCON360104
CCHL340177
CCAV227941
CBUR434922
CBUR360115
CBUR227377
CBOT515621
CBOT508765
CBLO291272
CBLO203907
CABO218497
BXEN266265
BWEI315730
BVIE269482
BTUR314724
BTRI382640
BTHU412694
BTHU281309
BTHE226186
BTHA271848
BSUI470137
BSUI204722
BSP376
BSP36773
BSP107806
BQUI283165
BPSE320373
BPSE320372
BPSE272560
BPET94624
BPER257313
BPAR257311
BOVI236
BMEL359391
BMEL224914
BMAL320389
BMAL320388
BMAL243160
BJAP224911
BHER314723
BHEN283166
BHAL272558
BGAR290434
BCLA66692
BCIC186490
BCER572264
BCER405917
BCER315749
BCER288681
BCER226900
BCEN331272
BCEN331271
BCAN483179
BBUR224326
BBRO257310
BBAC360095
BAPH372461
BAPH198804
BANT592021
BANT568206
BANT261594
BANT260799
BAMB398577
BAMB339670
BAFZ390236
BABO262698
AYEL322098
AURANTIMONAS
ASP76114
ASP62977
ASP62928
ASP232721 AJS_2966
ASP1667
ASAL382245
APLE434271
APLE416269
APHA212042
APER272557
AORE350688
ANAE240017
AMAR234826
ALAI441768
AHYD196024
AFUL224325
AFER243159
AEHR187272
ADEH290397
ACEL351607
ACAU438753
ABOR393595
ABAC204669
AAVE397945
AAUR290340
AAEO224324


Organism features enriched in list (features available for 408 out of the 436 orgs in the list)
Feature    Pvalue       Num occurrences in list  Total num occurrences  
Arrangment:Pairs 0.000047161112
Arrangment:Singles 0.0003317182286
Disease:Gastroenteritis 0.0000564213
Endospores:No 0.0050108160211
GC_Content_Range4:40-60 0.0000484136224
GC_Content_Range4:60-100 0.0025127114145
GC_Content_Range7:50-60 0.001184162107
GC_Content_Range7:60-70 0.0074802104134
Genome_Size_Range5:0-2 3.094e-7132155
Genome_Size_Range5:4-6 7.205e-1195184
Genome_Size_Range5:6-10 0.00718134047
Genome_Size_Range9:0-1 0.00004992727
Genome_Size_Range9:1-2 0.0002265105128
Genome_Size_Range9:4-5 0.00002485096
Genome_Size_Range9:5-6 0.00002664588
Habitat:Aquatic 0.00323065391
Habitat:Host-associated 0.0038814157206
Habitat:Multiple 0.0092752114178
Motility:No 0.0051823117151
Motility:Yes 0.0048241174267
Oxygen_Req:Aerobic 0.0007462145185
Oxygen_Req:Facultative 2.723e-7114201
Oxygen_Req:Microaerophilic 0.00144461818
Shape:Irregular_coccus 0.00209111717
Shape:Rod 0.0000834223347
Shape:Sphere 0.00850131819



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ORGANISMS ENRICHED FOR GROUP:

Total number of orgs: 18
Effective number of orgs (counting one per cluster within 468 clusters): 18

Organism list
Homologs in each organism in the list
Features enriched in organism list


Follow (ncbi) link, when present, to find the set of organism features for each organism
Org ID  Org Name    Pvalue       # genes in tgt genome found in org  # genes in group found in org  
SMAR399550 ncbi Staphylothermus marinus F1 0.00001502736
PMAR167540 Prochlorococcus marinus pastoris MED4ax 0.00046424826
PMAR167542 ncbi Prochlorococcus marinus MIT 9515 0.00050644896
PMAR146891 ncbi Prochlorococcus marinus AS9601 0.00051274906
PMAR74546 ncbi Prochlorococcus marinus MIT 9312 0.00061495056
LDEL390333 ncbi Lactobacillus delbrueckii bulgaricus ATCC 11842 0.00130315726
BLON206672 ncbi Bifidobacterium longum NCC2705 0.00153875886
TDEN243275 ncbi Treponema denticola ATCC 35405 0.00163585946
LHEL405566 ncbi Lactobacillus helveticus DPC 4571 0.00179096036
PMAR74547 ncbi Prochlorococcus marinus MIT 9313 0.00266186446
LJOH257314 ncbi Lactobacillus johnsonii NCC 533 0.00271206466
LACI272621 ncbi Lactobacillus acidophilus NCFM 0.00382656846
SSP64471 ncbi Synechococcus sp. CC9311 0.00503937166
PRUM264731 ncbi Prevotella ruminicola 23 0.00629737436
LREU557436 ncbi Lactobacillus reuteri DSM 20016 0.00677077526
LMES203120 ncbi Leuconostoc mesenteroides mesenteroides ATCC 8293 0.00727347616
PPEN278197 ncbi Pediococcus pentosaceus ATCC 25745 0.00870127846
TLET416591 ncbi Thermotoga lettingae TMO 0.00975267996


Names of the homologs of the genes in the group in each of these orgs
  G6142   EG11842   EG11841   EG11686   EG11658   EG10578   
SMAR399550 SMAR_0710SMAR_0710SMAR_0710SMAR_0710SMAR_0710SMAR_0710
PMAR167540 PMM1323PMM1323PMM1323PMM1323PMM1323PMM1323
PMAR167542 P9515ORF_1552P9515ORF_1552P9515ORF_1552P9515ORF_1552P9515ORF_1552P9515ORF_1552
PMAR146891 A9601_15231A9601_15231A9601_15231A9601_15231A9601_15231A9601_15231
PMAR74546 PMT9312_1421PMT9312_1421PMT9312_1421PMT9312_1421PMT9312_1421PMT9312_1421
LDEL390333 LDB1202LDB1202LDB1202LDB1202LDB1202LDB1202
BLON206672 BL0976BL0976BL0976BL0976BL0976BL0976
TDEN243275 TDE_1454TDE_1454TDE_1454TDE_1454TDE_1454TDE_1454
LHEL405566 LHV_1543LHV_1543LHV_1543LHV_1543LHV_1543LHV_1543
PMAR74547 PMT1398PMT1398PMT1398PMT1398PMT1398PMT1398
LJOH257314 LJ_0857LJ_0260LJ_0857LJ_0857LJ_0260LJ_0260
LACI272621 LBA1463LBA1463LBA1463LBA1463LBA1463LBA1463
SSP64471 GSYN2332GSYN2332GSYN2332GSYN2332GSYN2332GSYN2332
PRUM264731 GFRORF2598GFRORF2598GFRORF1724GFRORF2598GFRORF2598GFRORF2598
LREU557436 LREU_1086LREU_1086LREU_1086LREU_1768LREU_1086LREU_1768
LMES203120 LEUM_1245LEUM_1245LEUM_1245LEUM_1245LEUM_1245LEUM_0880
PPEN278197 PEPE_0185PEPE_0185PEPE_0185PEPE_0185PEPE_0185PEPE_0185
TLET416591 TLET_0046TLET_0046TLET_0046TLET_0046TLET_0046TLET_0046


Organism features enriched in list (features available for 17 out of the 18 orgs in the list)
Feature    Pvalue       Num occurrences in list  Total num occurrences  
GC_Content_Range4:0-40 0.003237312213
GC_Content_Range7:30-40 0.000270512166
Genome_Size_Range9:1-2 0.00353899128
Gram_Stain:Gram_Neg 0.00380034333
Pathogenic_in:Human 0.00391841213
Pathogenic_in:No 0.000224814226
Shape:Oval 0.007410425



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ORGANISMS DEPLETED FOR GROUP:




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PHYLOGENETIC PROFILE SIMILARITY WITH KNOWN PATHWAYS:

Pathways or complexes with absolute value of Pearson coefficient with respect to candidate larger than 0.4 are listed below
The candidate is assumed to exist in orgs listed in section List of organisms containing most genes from the group


Pathway or complex  # Orgs containing it  # of those orgs also containing candidate  Pearson Coeff  
PWY-6507 (5-dehydro-4-deoxy-D-glucuronate degradation)76580.4209



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PAIRWISE GENOME CONTEXT SCORE MATRIX:

  EG11842   EG11841   EG11686   EG11658   EG10578   
G61420.9997590.9997750.999850.999790.999794
EG118420.9998530.9998080.9998150.999805
EG118410.9998140.9998070.9998
EG116860.9998350.999861
EG116580.999797
EG10578



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PAIRWISE BLAST SCORES:

  G6142   EG11842   EG11841   EG11686   EG11658   EG10578   
G61420.0f01.3e-391.9e-331.6e-913.7e-443.5e-39
EG118424.7e-440.0f001.7e-461.6e-572.3e-35
EG118418.4e-3800.0f02.5e-453.0e-582.5e-38
EG116868.5e-932.8e-462.6e-430.0f03.7e-441.7e-46
EG116585.3e-451.7e-533.6e-533.8e-420.0f04.8e-35
EG105782.0e-389.3e-321.3e-341.6e-433.3e-360.0f0



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PATHWAYS OR PROTEIN COMPLEX MATCHES IN TARGET ORG:

For each case, all genes involved in the pathway or complex are listed. For each gene we list: a tag indicating whether the gene is part of the candidate list or not, the average and the minimum scores of the gene to the candidate list, the gene name, and its product names.



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GENOME CONTEXT INFORMATION:

Each row corresponds to a replicon in an organism, each column to a gene in the candidate. The second column indicates whether the organims was included in the list used to compute the genome context scores or not. Some organisms are not included because they are phylogenetically too similar to others already in the list.
The number in the matrix indicate the position of the homolog of the gene in the replicon. All numbers are relative to the smaller one, which is assigned a position of zero. Two columns with the same number indicate that the two genes matched the same gene in that organism.

Genome browser links for gene clusters

The links below opens a genome browser BioCyc page for each cluster of genes in the target genome. These pages shows the central gene of the cluster in the target genome and its best homolog in the reference genomes, for the genomes that contain homologs for at least 75% of the genes in the group. Only one genome per phylogenetic cluster of organisms is shown, to keep the list smaller.

EG11841 EG11842 (centered at EG11842)
EG10578 (centered at EG10578)
EG11658 (centered at EG11658)
EG11686 (centered at EG11686)
G6142 (centered at G6142)


ORG:REPLICON:CIRC?\GENE  IN REF LIST  G6142   EG11842   EG11841   EG11686   EG11658   EG10578   
170/623169/623175/623180/623174/623176/623
ABAU360910:0:Tyes-00---
ABUT367737:0:Tyes0--000
ACRY349163:8:Tyes0--000
AMAR329726:9:Tyes000000
AMET293826:0:Tyes500000
ASP232721:2:Tyes--0---
AVAR240292:3:Tyes000000
BAMY326423:0:Tyes1076583583107610760
BBAC264462:0:Tyes-000-0
BFRA272559:1:Tyes000000
BFRA295405:0:Tno000000
BLIC279010:0:Tyes000000
BLON206672:0:Tyes000000
BPUM315750:0:Tyes000000
BSUB:0:Tyes1208650650120812080
CACE272562:1:Tyes276500276527650
CAULO:0:Tyes130300000
CBEI290402:0:Tyes223100223122312231
CBOT36826:1:Tno000000
CBOT441770:0:Tyes000000
CBOT441771:0:Tno000000
CBOT441772:1:Tno000000
CBOT498213:1:Tno000000
CBOT536232:0:Tno000000
CDIF272563:1:Tyes000000
CEFF196164:0:Fyes000000
CJAP155077:0:Tyes211621162116211602116
CPER195102:1:Tyes063306330633
CPER195103:0:Tno0303003030
CPER289380:3:Tyes000000
CPHY357809:0:Tyes000000
CPSY167879:0:Tyes24242424240
CSAL290398:0:Tyes000000
CSP78:2:Tyes014932189149314932189
DHAF138119:0:Tyes000000
DOLE96561:0:Tyes000000
ECAR218491:0:Tyes000000
ECOL199310:0:Tno244900244902449
ECOL316407:0:Tno031253125334513543838
ECOL331111:6:Tno225424782478225402737
ECOL362663:0:Tno220300220302203
ECOL364106:1:Tno239600239602396
ECOL405955:2:Tyes217700217702177
ECOL409438:6:Tyes224624812481224602752
ECOL413997:0:Tno195222102210195202448
ECOL439855:4:Tno234925922592234902901
ECOL469008:0:Tno040804080019703831
ECOL481805:0:Tno000003863
ECOL585034:0:Tno213023672367213002620
ECOL585035:0:Tno234400234402344
ECOL585055:0:Tno229800229802780
ECOL585056:2:Tno226424972497226402743
ECOL585057:0:Tno272816741674272803096
ECOL585397:0:Tno247627082708247602476
ECOL83334:0:Tno226325482548226302862
ECOLI:0:Tno036783677345413773924
ECOO157:0:Tno224725282528224702793
EFER585054:1:Tyes000000
ELIT314225:0:Tyes000000
ESP42895:1:Tyes394394005980
FJOH376686:0:Tyes000000
FNOD381764:0:Tyes0000-0
FNUC190304:0:Tyes0-0000
FPHI484022:1:Tyes-----0
FTUL401614:0:Tyes-00000
GVIO251221:0:Tyes000000
HARS204773:0:Tyes00----
HNEP81032:0:Tyes000000
HSOM205914:1:Tyes000000
HSOM228400:0:Tno000000
KPNE272620:2:Tyes183900235633332814
LACI272621:0:Tyes000000
LBIF355278:2:Tyes000000
LBIF456481:2:Tno000000
LBRE387344:2:Tyes30600306306306
LCAS321967:1:Tyes000000
LCHO395495:0:Tyes--00--
LDEL321956:0:Tyes-00000
LDEL390333:0:Tyes000000
LHEL405566:0:Tyes000000
LJOH257314:0:Tyes449044944900
LLAC272622:5:Tyes-00000
LLAC272623:0:Tyes000000
LMES203120:1:Tyes3543543543543540
LPLA220668:0:Tyes5580055802635
LREU557436:0:Tyes0006880688
LSAK314315:0:Tyes000000
LWEL386043:0:Tyes000000
MAER449447:0:Tyes000000
MMAR394221:0:Tyes2222220022
MPET420662:1:Tyes0-0---
MSME246196:0:Tyes--0---
MSP400668:0:Tyes000000
MSUC221988:0:Tyes1871871871871870
NARO279238:0:Tyes554--5540-
NFAR247156:2:Tyes000000
NSP103690:6:Tyes000000
NSP35761:1:Tyes---0-0
PACN267747:0:Tyes000000
PATL342610:0:Tyes000000
PDIS435591:0:Tyes000000
PFUR186497:0:Tyes-00---
PMAR146891:0:Tyes000000
PMAR167539:0:Tyes0000-0
PMAR167540:0:Tyes000000
PMAR167542:0:Tyes000000
PMAR167546:0:Tyes0-0000
PMAR167555:0:Tyes00-000
PMAR59920:0:Tno00-000
PMAR74546:0:Tyes000000
PMAR74547:0:Tyes000000
PMAR93060:0:Tyes0-0000
PMOB403833:0:Tyes-00000
PNAP365044:8:Tyes--0-0-
PPEN278197:0:Tyes000000
PPRO298386:1:Tyes-00--0
PPRO298386:2:Tyes0--00-
PRUM264731:0:Tyes8538530853853853
PSTU379731:0:Tyes-00---
RALB246199:0:Tyes--00-0
RCAS383372:0:Tyes0000-0
RDEN375451:4:Tyes0-----
RRUB269796:1:Tyes00000-
RSP101510:3:Fyes--0---
RSP357808:0:Tyes000000
SAGA205921:0:Tno00-000
SAGA208435:0:Tno0--000
SAGA211110:0:Tyes00-000
SALA317655:1:Tyes00-000
SARE391037:0:Tyes-0-000
SBAL399599:3:Tyes000000
SBAL402882:1:Tno000000
SBOY300268:1:Tyes209200209202092
SDEG203122:0:Tyes00009040
SDEN318161:0:Tyes000000
SDYS300267:1:Tyes000000
SELO269084:0:Tyes000000
SENT209261:0:Tno152001520574
SENT220341:0:Tno152001520576
SENT295319:0:Tno02442440243492
SENT321314:2:Tno02462460245521
SENT454169:2:Tno02422420242528
SERY405948:0:Tyes----0-
SFLE198214:0:Tyes157101570157
SFLE373384:0:Tno319113190459
SHAE279808:0:Tyes000000
SHIGELLA:0:Tno015815801580
SLAC55218:1:Fyes----0-
SMAR399550:0:Tyes000000
SPNE488221:0:Tno0--0--
SPRO399741:1:Tyes000000
SPYO370552:0:Tno00--00
SSAP342451:2:Tyes000000
SSON300269:1:Tyes209100209102091
SSP1131:0:Tyes0-00-0
SSP1148:0:Tyes000000
SSP321327:0:Tyes000000
SSP321332:0:Tyes000000
SSP64471:0:Tyes000000
SSP84588:0:Tyes0-0000
SSP94122:1:Tyes000000
STHE264199:0:Tyes-00000
STHE299768:0:Tno-00000
STHE322159:2:Tyes-00000
STRO369723:0:Tyes-0-000
STYP99287:1:Tyes02652650264542
TDEN243275:0:Tyes000000
TELO197221:0:Tyes000000
TERY203124:0:Tyes000000
TLET416591:0:Tyes000000
TSP1755:0:Tyes0-0000
TTEN273068:0:Tyes49800000
TTHE262724:0:Tyes--440-
TTHE300852:1:Tyes0066-0
TTUR377629:0:Tyes51301707000
VPAR223926:1:Tyes000000
VVUL196600:1:Tyes000000
VVUL216895:0:Tno000000
XAXO190486:0:Tyes000000
XCAM190485:0:Tyes4300000
XCAM314565:0:Tno4400000
XCAM316273:0:Tno000000
XCAM487884:0:Tno5400000
XORY291331:0:Tno000000
XORY342109:0:Tyes000000
XORY360094:0:Tno000000
YENT393305:1:Tyes0-000-
YPES187410:5:Tno000000
YPES214092:3:Tno000000
YPES349746:2:Tno000000
YPES360102:3:Tyes000000
YPES377628:2:Tno000000
YPES386656:2:Tno000000
YPSE273123:2:Tno000000
YPSE349747:2:Tno000000



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