CANDIDATE ID: 435

CANDIDATE ID: 435

NUMBER OF GENES: 6
AVERAGE SCORE:    9.9948047e-1 (range=[0.0,1.0])
AVERAGE MINIMUM BLAST P-VAL:    1.0000000e+0

Gene List
List of organisms containing most genes from the group
    Phylogenetic tree highlighting these organisms (opens new page)
List of organisms containing very few or no genes from the group
List of organisms enriched for group
List of organisms depleted for group
Phylogenetic profile similarity with known pathways
Pairwise genome context scores
Pairwise Blast scores
Pathway or protein complex matches in target organism
Genome context matrix
    Genes and their orthologs in genome browser BioCyc pages



GENE LIST:

- EG11259 (rnr) (b4179)
   Products of gene:
     - EG11259-MONOMER (RNase R)
       Reactions:
        RNase II degradation substrate mRNA  ->  n a nucleoside-5'-phosphate

- EG10790 (purA) (b4177)
   Products of gene:
     - ADENYLOSUCCINATE-SYN-MONOMER (PurA)
     - ADENYLOSUCCINATE-SYN-DIMER (adenylosuccinate synthetase)
       Reactions:
        L-aspartate + inosine-5'-phosphate + GTP  ->  adenylo-succinate + phosphate + GDP + 2 H+
         In pathways
         PRPP-PWY (superpathway of histidine, purine, and pyrimidine biosynthesis)
         DENOVOPURINE2-PWY (purine nucleotides de novo biosynthesis I)
         P121-PWY (P121-PWY)
         PWY-841 (PWY-841)
         PWY-6126 (adenosine nucleotides de novo biosynthesis)

- EG10438 (hfq) (b4172)
   Products of gene:
     - EG10438-MONOMER (RNA-binding protein that affects many cellular processes; homolog of mammalian Sm/Sm-like proteins)
     - CPLX0-1461 (HF-I, host factor for RNA phage Q β replication)

- EG10437 (hflX) (b4173)
   Products of gene:
     - EG10437-MONOMER (GTPase associated with the 50S subunit of the ribosome)
       Reactions:
        GTP + H2O  ->  GDP + phosphate + H+

- EG10436 (hflK) (b4174)
   Products of gene:
     - EG10436-MONOMER (regulator of FtsH protease)
     - CPLX0-1321 (HflK-HflC complex; regulator of FtsH protease)
     - CPLX0-2982 (HflB, integral membrane ATP-dependent zinc metallopeptidase)
       Reactions:
        EC# 3.4.24.-

- EG10435 (hflC) (b4175)
   Products of gene:
     - EG10435-MONOMER (regulator of FtsH protease)
     - CPLX0-1321 (HflK-HflC complex; regulator of FtsH protease)
     - CPLX0-2982 (HflB, integral membrane ATP-dependent zinc metallopeptidase)
       Reactions:
        EC# 3.4.24.-



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ORGANISMS CONTAINING AT LEAST 5 GENES FROM THE GROUP:

Total number of orgs: 272
Effective number of orgs (counting one per cluster within 468 clusters): 187

Organism list
Homologs in each organism in the list
Features enriched in organism list


Follow (ncbi) link, when present, to find the set of organism features for each organism
Org ID  Org Name  # genes in group found in org  
YPSE349747 ncbi Yersinia pseudotuberculosis IP 317586
YPSE273123 ncbi Yersinia pseudotuberculosis IP 329536
YPES386656 ncbi Yersinia pestis Pestoides F6
YPES377628 ncbi Yersinia pestis Nepal5166
YPES360102 ncbi Yersinia pestis Antiqua6
YPES349746 ncbi Yersinia pestis Angola6
YPES214092 ncbi Yersinia pestis CO926
YPES187410 ncbi Yersinia pestis KIM 106
YENT393305 ncbi Yersinia enterocolitica enterocolitica 80816
XORY360094 ncbi Xanthomonas oryzae pv. oryzae PXO99A6
XORY342109 ncbi Xanthomonas oryzae pv. oryzae MAFF 3110186
XORY291331 ncbi Xanthomonas oryzae pv. oryzae KACC103316
XFAS405440 ncbi Xylella fastidiosa M126
XFAS183190 ncbi Xylella fastidiosa Temecula16
XFAS160492 ncbi Xylella fastidiosa 9a5c6
XCAM487884 Xanthomonas campestris pv. paulliniae6
XCAM316273 ncbi Xanthomonas campestris pv. vesicatoria str. 85-106
XCAM314565 ncbi Xanthomonas campestris pv. campestris str. 80046
XCAM190485 ncbi Xanthomonas campestris pv. campestris str. ATCC 339136
XAXO190486 ncbi Xanthomonas axonopodis pv. citri str. 3066
XAUT78245 ncbi Xanthobacter autotrophicus Py26
VVUL216895 ncbi Vibrio vulnificus CMCP66
VVUL196600 ncbi Vibrio vulnificus YJ0166
VPAR223926 ncbi Vibrio parahaemolyticus RIMD 22106336
VFIS312309 ncbi Vibrio fischeri ES1146
VEIS391735 ncbi Verminephrobacter eiseniae EF01-25
VCHO345073 ncbi Vibrio cholerae O3956
VCHO ncbi Vibrio cholerae O1 biovar El Tor str. N169616
TTUR377629 ncbi Teredinibacter turnerae T79016
TTEN273068 ncbi Thermoanaerobacter tengcongensis MB45
TSP28240 Thermotoga sp.5
TPET390874 ncbi Thermotoga petrophila RKU-15
TMAR243274 ncbi Thermotoga maritima MSB85
TDEN292415 ncbi Thiobacillus denitrificans ATCC 252596
TCRU317025 ncbi Thiomicrospira crunogena XCL-26
STYP99287 ncbi Salmonella enterica enterica serovar Typhimurium str. LT26
STHE292459 ncbi Symbiobacterium thermophilum IAM 148635
SSP94122 ncbi Shewanella sp. ANA-36
SSP644076 Silicibacter sp. TrichCH4B6
SSP292414 ncbi Ruegeria sp. TM10406
SSON300269 ncbi Shigella sonnei Ss0466
SSED425104 ncbi Shewanella sediminis HAW-EB36
SPRO399741 ncbi Serratia proteamaculans 5686
SPEA398579 ncbi Shewanella pealeana ATCC 7003456
SONE211586 ncbi Shewanella oneidensis MR-16
SMEL266834 ncbi Sinorhizobium meliloti 10216
SMED366394 ncbi Sinorhizobium medicae WSM4196
SLOI323850 ncbi Shewanella loihica PV-46
SLAC55218 Ruegeria lacuscaerulensis6
SHIGELLA ncbi Shigella flexneri 2a str. 2457T6
SHAL458817 ncbi Shewanella halifaxensis HAW-EB46
SGLO343509 ncbi Sodalis glossinidius morsitans6
SFLE373384 ncbi Shigella flexneri 5 str. 84016
SFLE198214 ncbi Shigella flexneri 2a str. 3016
SENT454169 ncbi Salmonella enterica enterica serovar Heidelberg str. SL4766
SENT321314 ncbi Salmonella enterica enterica serovar Choleraesuis str. SC-B676
SENT295319 ncbi Salmonella enterica enterica serovar Paratyphi A str. ATCC 91506
SENT220341 ncbi Salmonella enterica enterica serovar Typhi str. CT186
SENT209261 ncbi Salmonella enterica enterica serovar Typhi str. Ty26
SDYS300267 ncbi Shigella dysenteriae Sd1976
SDEN318161 ncbi Shewanella denitrificans OS2176
SDEG203122 ncbi Saccharophagus degradans 2-406
SBOY300268 ncbi Shigella boydii Sb2276
SBAL402882 ncbi Shewanella baltica OS1856
SBAL399599 ncbi Shewanella baltica OS1956
SALA317655 ncbi Sphingopyxis alaskensis RB22565
RSPH349102 ncbi Rhodobacter sphaeroides ATCC 170256
RSPH349101 ncbi Rhodobacter sphaeroides ATCC 170296
RSPH272943 ncbi Rhodobacter sphaeroides 2.4.16
RSOL267608 ncbi Ralstonia solanacearum GMI10006
RRUB269796 ncbi Rhodospirillum rubrum ATCC 111706
RPOM246200 ncbi Ruegeria pomeroyi DSS-36
RPAL316058 ncbi Rhodopseudomonas palustris HaA26
RPAL316057 ncbi Rhodopseudomonas palustris BisB56
RPAL316056 ncbi Rhodopseudomonas palustris BisB186
RPAL316055 ncbi Rhodopseudomonas palustris BisA536
RPAL258594 ncbi Rhodopseudomonas palustris CGA0096
RMET266264 ncbi Ralstonia metallidurans CH346
RLEG216596 ncbi Rhizobium leguminosarum bv. viciae 38416
RFER338969 ncbi Rhodoferax ferrireducens T1185
REUT381666 ncbi Ralstonia eutropha H166
REUT264198 ncbi Ralstonia eutropha JMP1346
RETL347834 ncbi Rhizobium etli CFN 426
RDEN375451 ncbi Roseobacter denitrificans OCh 1146
PSYR223283 ncbi Pseudomonas syringae pv. tomato str. DC30006
PSYR205918 ncbi Pseudomonas syringae pv. syringae B728a6
PSTU379731 ncbi Pseudomonas stutzeri A15016
PSP56811 Psychrobacter sp.5
PSP312153 ncbi Polynucleobacter necessarius asymbioticus QLW-P1DMWA-16
PSP296591 ncbi Polaromonas sp. JS6666
PPUT76869 ncbi Pseudomonas putida GB-16
PPUT351746 ncbi Pseudomonas putida F16
PPUT160488 ncbi Pseudomonas putida KT24406
PPRO298386 ncbi Photobacterium profundum SS96
PNAP365044 ncbi Polaromonas naphthalenivorans CJ26
PMUL272843 ncbi Pasteurella multocida multocida Pm706
PMEN399739 ncbi Pseudomonas mendocina ymp6
PLUM243265 ncbi Photorhabdus luminescens laumondii TTO16
PING357804 ncbi Psychromonas ingrahamii 376
PHAL326442 ncbi Pseudoalteromonas haloplanktis TAC1256
PFLU220664 ncbi Pseudomonas fluorescens Pf-56
PFLU216595 ncbi Pseudomonas fluorescens SBW256
PFLU205922 ncbi Pseudomonas fluorescens Pf0-16
PENT384676 ncbi Pseudomonas entomophila L486
PCRY335284 ncbi Psychrobacter cryohalolentis K55
PCAR338963 ncbi Pelobacter carbinolicus DSM 23806
PATL342610 ncbi Pseudoalteromonas atlantica T6c6
PARC259536 ncbi Psychrobacter arcticus 273-45
PAER208964 ncbi Pseudomonas aeruginosa PAO16
PAER208963 ncbi Pseudomonas aeruginosa UCBPP-PA146
OCAR504832 ncbi Oligotropha carboxidovorans OM56
OANT439375 ncbi Ochrobactrum anthropi ATCC 491886
NWIN323098 ncbi Nitrobacter winogradskyi Nb-2556
NOCE323261 ncbi Nitrosococcus oceani ATCC 197076
NMUL323848 ncbi Nitrosospira multiformis ATCC 251966
NHAM323097 ncbi Nitrobacter hamburgensis X146
NEUT335283 ncbi Nitrosomonas eutropha C916
NEUR228410 ncbi Nitrosomonas europaea ATCC 197186
NARO279238 ncbi Novosphingobium aromaticivorans DSM 124446
MXAN246197 ncbi Myxococcus xanthus DK 16225
MSUC221988 ncbi Mannheimia succiniciproducens MBEL55E6
MSP409 Methylobacterium sp.6
MSP400668 ncbi Marinomonas sp. MWYL16
MSP266779 ncbi Chelativorans sp. BNC16
MPET420662 ncbi Methylibium petroleiphilum PM16
MMAR394221 ncbi Maricaulis maris MCS105
MMAG342108 ncbi Magnetospirillum magneticum AMB-16
MLOT266835 ncbi Mesorhizobium loti MAFF3030996
MFLA265072 ncbi Methylobacillus flagellatus KT6
MEXT419610 ncbi Methylobacterium extorquens PA16
MCAP243233 ncbi Methylococcus capsulatus Bath6
MAQU351348 ncbi Marinobacter aquaeolei VT86
LSPH444177 ncbi Lysinibacillus sphaericus C3-415
LPNE400673 ncbi Legionella pneumophila Corby6
LPNE297246 ncbi Legionella pneumophila Paris6
LPNE297245 ncbi Legionella pneumophila Lens6
LPNE272624 ncbi Legionella pneumophila pneumophila Philadelphia 16
LCHO395495 ncbi Leptothrix cholodnii SP-66
KPNE272620 ncbi Klebsiella pneumoniae pneumoniae MGH 785786
JSP375286 ncbi Janthinobacterium sp. Marseille6
JSP290400 ncbi Jannaschia sp. CCS16
ILOI283942 ncbi Idiomarina loihiensis L2TR6
HSOM228400 ncbi Haemophilus somnus 23366
HSOM205914 ncbi Haemophilus somnus 129PT6
HNEP81032 Hyphomonas neptunium6
HINF71421 ncbi Haemophilus influenzae Rd KW205
HINF374930 ncbi Haemophilus influenzae PittEE5
HINF281310 ncbi Haemophilus influenzae 86-028NP5
HHAL349124 ncbi Halorhodospira halophila SL16
HDUC233412 ncbi Haemophilus ducreyi 35000HP6
HCHE349521 ncbi Hahella chejuensis KCTC 23966
HARS204773 ncbi Herminiimonas arsenicoxydans6
FTUL458234 ncbi Francisella tularensis holarctica FTNF002-005
FTUL418136 ncbi Francisella tularensis tularensis WY96-34185
FTUL401614 ncbi Francisella novicida U1125
FTUL393115 ncbi Francisella tularensis tularensis FSC1985
FTUL393011 ncbi Francisella tularensis holarctica OSU185
FTUL351581 Francisella tularensis holarctica FSC2005
FRANT ncbi Francisella tularensis tularensis SCHU S45
FPHI484022 ncbi Francisella philomiragia philomiragia ATCC 250175
ESP42895 Enterobacter sp.6
ELIT314225 ncbi Erythrobacter litoralis HTCC25946
EFER585054 ncbi Escherichia fergusonii ATCC 354696
ECOO157 ncbi Escherichia coli O157:H7 EDL9336
ECOL83334 Escherichia coli O157:H76
ECOL585397 ncbi Escherichia coli ED1a6
ECOL585057 ncbi Escherichia coli IAI396
ECOL585056 ncbi Escherichia coli UMN0266
ECOL585055 ncbi Escherichia coli 559896
ECOL585035 ncbi Escherichia coli S886
ECOL585034 ncbi Escherichia coli IAI16
ECOL481805 ncbi Escherichia coli ATCC 87396
ECOL469008 ncbi Escherichia coli BL21(DE3)6
ECOL439855 ncbi Escherichia coli SMS-3-56
ECOL413997 ncbi Escherichia coli B str. REL6066
ECOL409438 ncbi Escherichia coli SE116
ECOL405955 ncbi Escherichia coli APEC O16
ECOL364106 ncbi Escherichia coli UTI896
ECOL362663 ncbi Escherichia coli 5366
ECOL331111 ncbi Escherichia coli E24377A6
ECOL316407 ncbi Escherichia coli K-12 substr. W31106
ECOL199310 ncbi Escherichia coli CFT0736
ECAR218491 ncbi Pectobacterium atrosepticum SCRI10436
DVUL882 ncbi Desulfovibrio vulgaris Hildenborough5
DSHI398580 ncbi Dinoroseobacter shibae DFL 126
DPSY177439 ncbi Desulfotalea psychrophila LSv545
DNOD246195 ncbi Dichelobacter nodosus VCS1703A6
DDES207559 ncbi Desulfovibrio desulfuricans desulfuricans G205
DARO159087 ncbi Dechloromonas aromatica RCB6
CVIO243365 ncbi Chromobacterium violaceum ATCC 124726
CSP78 Caulobacter sp.6
CSP501479 Citreicella sp. SE456
CSAL290398 ncbi Chromohalobacter salexigens DSM 30436
CRUT413404 ncbi Candidatus Ruthia magnifica Cm (Calyptogena magnifica)5
CPSY167879 ncbi Colwellia psychrerythraea 34H6
CPER289380 ncbi Clostridium perfringens SM1015
CPER195103 ncbi Clostridium perfringens ATCC 131245
CPER195102 ncbi Clostridium perfringens 135
CNOV386415 ncbi Clostridium novyi NT5
CKLU431943 ncbi Clostridium kluyveri DSM 5555
CJAP155077 Cellvibrio japonicus6
CDIF272563 ncbi Clostridium difficile 6305
CBOT536232 ncbi Clostridium botulinum A2 str. Kyoto5
CBOT515621 ncbi Clostridium botulinum Ba4 str. 6575
CBOT508765 ncbi Clostridium botulinum B str. Eklund 17B5
CBOT498213 ncbi Clostridium botulinum B1 str. Okra6
CBOT441772 ncbi Clostridium botulinum F str. Langeland5
CBOT441771 ncbi Clostridium botulinum A str. Hall5
CBOT441770 ncbi Clostridium botulinum A str. ATCC 193975
CBOT36826 Clostridium botulinum A5
CBLO291272 ncbi Candidatus Blochmannia pennsylvanicus BPEN5
CBEI290402 ncbi Clostridium beijerinckii NCIMB 80525
CACE272562 ncbi Clostridium acetobutylicum ATCC 8246
BWEI315730 ncbi Bacillus weihenstephanensis KBAB46
BVIE269482 ncbi Burkholderia vietnamiensis G46
BTRI382640 ncbi Bartonella tribocorum CIP 1054766
BTHU412694 ncbi Bacillus thuringiensis Al Hakam6
BTHU281309 ncbi Bacillus thuringiensis serovar konkukian str. 97-276
BTHA271848 ncbi Burkholderia thailandensis E2646
BSUI470137 ncbi Brucella suis ATCC 234456
BSUI204722 ncbi Brucella suis 13306
BSP376 Bradyrhizobium sp.6
BSP36773 Burkholderia sp.6
BQUI283165 ncbi Bartonella quintana Toulouse6
BPSE320373 ncbi Burkholderia pseudomallei 6686
BPSE320372 ncbi Burkholderia pseudomallei 1710b6
BPSE272560 ncbi Burkholderia pseudomallei K962436
BPET94624 Bordetella petrii6
BPER257313 ncbi Bordetella pertussis Tohama I6
BPAR257311 ncbi Bordetella parapertussis 128226
BOVI236 Brucella ovis6
BMEL359391 ncbi Brucella melitensis biovar Abortus 23086
BMEL224914 ncbi Brucella melitensis bv. 1 str. 16M6
BMAL320389 ncbi Burkholderia mallei NCTC 102476
BMAL320388 ncbi Burkholderia mallei SAVP16
BMAL243160 ncbi Burkholderia mallei ATCC 233446
BJAP224911 ncbi Bradyrhizobium japonicum USDA 1106
BHEN283166 ncbi Bartonella henselae Houston-16
BHAL272558 ncbi Bacillus halodurans C-1255
BCIC186490 Candidatus Baumannia cicadellinicola6
BCER572264 ncbi Bacillus cereus 03BB1026
BCER405917 Bacillus cereus W6
BCER315749 ncbi Bacillus cytotoxicus NVH 391-986
BCER288681 ncbi Bacillus cereus E33L6
BCER226900 ncbi Bacillus cereus ATCC 145796
BCEN331272 ncbi Burkholderia cenocepacia HI24246
BCEN331271 ncbi Burkholderia cenocepacia AU 10545
BCAN483179 ncbi Brucella canis ATCC 233656
BBRO257310 ncbi Bordetella bronchiseptica RB506
BBAC360095 ncbi Bartonella bacilliformis KC5836
BANT592021 ncbi Bacillus anthracis A02486
BANT568206 ncbi Bacillus anthracis CDC 6846
BANT261594 ncbi Bacillus anthracis Ames Ancestor6
BANT260799 ncbi Bacillus anthracis Sterne6
BAMB398577 ncbi Burkholderia ambifaria MC40-66
BAMB339670 ncbi Burkholderia ambifaria AMMD6
BABO262698 ncbi Brucella abortus bv. 1 str. 9-9416
ASP76114 ncbi Aromatoleum aromaticum EbN16
ASP62977 ncbi Acinetobacter sp. ADP15
ASP62928 ncbi Azoarcus sp. BH726
ASP232721 ncbi Acidovorax sp. JS425
ASAL382245 ncbi Aeromonas salmonicida salmonicida A4495
APLE434271 ncbi Actinobacillus pleuropneumoniae serovar 3 str. JL036
APLE416269 ncbi Actinobacillus pleuropneumoniae L206
AHYD196024 Aeromonas hydrophila dhakensis5
AFER243159 ncbi Acidithiobacillus ferrooxidans ATCC 232706
AEHR187272 ncbi Alkalilimnicola ehrlichii MLHE-16
ADEH290397 ncbi Anaeromyxobacter dehalogenans 2CP-C5
ACAU438753 ncbi Azorhizobium caulinodans ORS 5716
ABOR393595 ncbi Alcanivorax borkumensis SK26
ABAU360910 ncbi Bordetella avium 197N6
AAVE397945 ncbi Acidovorax citrulli AAC00-15


Names of the homologs of the genes in the group in each of these orgs
  EG11259   EG10790   EG10438   EG10437   EG10436   EG10435   
YPSE349747 YPSIP31758_3646YPSIP31758_3648YPSIP31758_3653YPSIP31758_3652YPSIP31758_3651YPSIP31758_3650
YPSE273123 YPTB0432YPTB0430YPTB0425YPTB0426YPTB0427YPTB0428
YPES386656 YPDSF_3594YPDSF_3596YPDSF_3601YPDSF_3600YPDSF_3599YPDSF_3598
YPES377628 YPN_3291YPN_3293YPN_3298YPN_3297YPN_3296YPN_3295
YPES360102 YPA_3904YPA_3906YPA_3911YPA_3910YPA_3909YPA_3908
YPES349746 YPANGOLA_A0692YPANGOLA_A0694YPANGOLA_A0699YPANGOLA_A0698YPANGOLA_A0697YPANGOLA_A0696
YPES214092 YPO0380YPO0378YPO0373YPO0374YPO0375YPO0376
YPES187410 Y0637Y0635Y0630Y0632Y0633Y0634
YENT393305 YE0384YE0382YE0377YE0378YE0379YE0380
XORY360094 XOOORF_2918XOOORF_4487XOOORF_1721XOOORF_1722XOOORF_4490XOOORF_4489
XORY342109 XOO1959XOO0840XOO2798XOO2797XOO0837XOO0838
XORY291331 XOO2080XOO0915XOO2946XOO2945XOO0912XOO0913
XFAS405440 XFASM12_0986XFASM12_1784XFASM12_0070XFASM12_0069XFASM12_1787XFASM12_1786
XFAS183190 PD_0820PD_1627PD_0066PD_0065PD_1630PD_1629
XFAS160492 XF1987XF0455XF0089XF0088XF0452XF0453
XCAM487884 XCC-B100_2747XCC-B100_3290XCC-B100_2543XCC-B100_2542XCC-B100_3294XCC-B100_3293
XCAM316273 XCAORF_1788XCAORF_1257XCAORF_1952XCAORF_1953XCAORF_1254XCAORF_1255
XCAM314565 XC_2718XC_3193XC_2515XC_2514XC_3196XC_3195
XCAM190485 XCC1517XCC1053XCC1716XCC1717XCC1050XCC1051
XAXO190486 XAC1567XAC1158XAC1735XAC1736XAC1155XAC1156
XAUT78245 XAUT_3864XAUT_0037XAUT_4393XAUT_4392XAUT_1664XAUT_3385
VVUL216895 VV1_1304VV1_1299VV1_1294VV1_1295VV1_1296VV1_1297
VVUL196600 VV3061VV3066VV3071VV3070VV3069VV3068
VPAR223926 VP2807VP2812VP2817VP2816VP2815VP2814
VFIS312309 VF2314VF2318VF2323VF2322VF2321VF2320
VEIS391735 VEIS_1425VEIS_0075VEIS_0074VEIS_0073VEIS_0072
VCHO345073 VC0395_A2177VC0395_A2180VC0395_A2758VC0395_A2759VC0395_A2760VC0395_A2761
VCHO VC2599VC2602VC0347VC0348VC0349VC0350
TTUR377629 TERTU_0545TERTU_3551TERTU_3558TERTU_3557TERTU_3556TERTU_3554
TTEN273068 TTE0983TTE2696TTE1360TTE1127TTE0384
TSP28240 TRQ2_0205TRQ2_0411TRQ2_0410TRQ2_0999TRQ2_0998
TPET390874 TPET_0207TPET_0395TPET_0394TPET_1107TPET_1108
TMAR243274 TM_0722TM_0526TM_0527TM_1822TM_1823
TDEN292415 TBD_0608TBD_0607TBD_1533TBD_0602TBD_0603TBD_0604
TCRU317025 TCR_1490TCR_1094TCR_1086TCR_1087TCR_1090TCR_1091
STYP99287 STM4368STM4366STM4361STM4362STM4363STM4364
STHE292459 STH339STH1746STH2123STH1977STH1976
SSP94122 SHEWANA3_0697SHEWANA3_0695SHEWANA3_0597SHEWANA3_0598SHEWANA3_0599SHEWANA3_0600
SSP644076 SCH4B_3322SCH4B_1764SCH4B_2287SCH4B_2288SCH4B_1779SCH4B_1780
SSP292414 TM1040_2994TM1040_1969TM1040_1356TM1040_1355TM1040_1956TM1040_1955
SSON300269 SSO_4364SSO_4362SSO_4357SSO_4358SSO_4359SSO_4360
SSED425104 SSED_0752SSED_0750SSED_0797SSED_0798SSED_0799SSED_0800
SPRO399741 SPRO_0438SPRO_0436SPRO_0431SPRO_0432SPRO_0433SPRO_0434
SPEA398579 SPEA_3590SPEA_3592SPEA_3540SPEA_3539SPEA_3538SPEA_3537
SONE211586 SO_3935SO_3937SO_0603SO_0604SO_0605SO_0606
SMEL266834 SMC01365SMC00643SMC01048SMC01049SMC01441SMC01440
SMED366394 SMED_0931SMED_2616SMED_1095SMED_1096SMED_2018SMED_2017
SLOI323850 SHEW_3289SHEW_3291SHEW_0566SHEW_0567SHEW_0568SHEW_0569
SLAC55218 SL1157_1398SL1157_2333SL1157_2690SL1157_2691SL1157_2344SL1157_2345
SHIGELLA VACBPURAHFQHFLXHFLKHFLC
SHAL458817 SHAL_3678SHAL_3680SHAL_3634SHAL_3633SHAL_3632SHAL_3631
SGLO343509 SG0343SG0342SG0337SG0338SG0339SG0340
SFLE373384 SFV_4337SFV_4335SFV_4330SFV_4331SFV_4332SFV_4333
SFLE198214 AAN45751.1AAN45749.1AAN45744.1AAN45745.1AAN45746.1AAN45747.1
SENT454169 SEHA_C4786SEHA_C4784SEHA_C4779SEHA_C4780SEHA_C4781SEHA_C4782
SENT321314 SCH_4244SCH_4242SCH_4237SCH_4238SCH_4239SCH_4240
SENT295319 SPA4185SPA4183SPA4178SPA4179SPA4180SPA4181
SENT220341 STY4725STY4723STY4718STY4719STY4720STY4721
SENT209261 T4419T4417T4412T4413T4414T4415
SDYS300267 SDY_4410SDY_4412SDY_4417SDY_4416SDY_4415SDY_4414
SDEN318161 SDEN_0511SDEN_0509SDEN_3205SDEN_3204SDEN_3203SDEN_3202
SDEG203122 SDE_1054SDE_2661SDE_2667SDE_2666SDE_2665SDE_2664
SBOY300268 SBO_4277SBO_4279SBO_4284SBO_4283SBO_4282SBO_4281
SBAL402882 SHEW185_0707SHEW185_0705SHEW185_3767SHEW185_3766SHEW185_3765SHEW185_3764
SBAL399599 SBAL195_0737SBAL195_0735SBAL195_3893SBAL195_3892SBAL195_3891SBAL195_3890
SALA317655 SALA_1231SALA_0510SALA_1272SALA_2249SALA_2248
RSPH349102 RSPH17025_0050RSPH17025_0875RSPH17025_1493RSPH17025_1494RSPH17025_0885RSPH17025_0886
RSPH349101 RSPH17029_2787RSPH17029_2010RSPH17029_1451RSPH17029_1450RSPH17029_2001RSPH17029_2000
RSPH272943 RSP_1126RSP_0366RSP_2843RSP_2844RSP_0357RSP_0356
RSOL267608 RSC1228RSC1226RSC1220RSC1221RSC1222RSC1223
RRUB269796 RRU_A3203RRU_A1106RRU_A1684RRU_A1685RRU_A2203RRU_A2202
RPOM246200 SPO_3330SPO_1318SPO_2081SPO_2080SPO_1329SPO_1330
RPAL316058 RPB_2418RPB_1330RPB_2878RPB_2877RPB_2038RPB_2039
RPAL316057 RPD_3034RPD_3894RPD_2594RPD_2595RPD_3352RPD_3351
RPAL316056 RPC_2238RPC_4086RPC_2582RPC_2583RPC_3262RPC_3261
RPAL316055 RPE_3380RPE_4141RPE_2762RPE_2763RPE_2178RPE_2179
RPAL258594 RPA3125RPA4295RPA2597RPA2598RPA3491RPA3490
RMET266264 RMET_2092RMET_2096RMET_2101RMET_2100RMET_2099RMET_2098
RLEG216596 RL1734RL3768RL2284RL2285RL3254RL3253
RFER338969 RFER_1976RFER_2302RFER_2301RFER_2300RFER_2299
REUT381666 H16_A2349H16_A2354H16_A2359H16_A2358H16_A2357H16_A2356
REUT264198 REUT_A2072REUT_A2076REUT_A2081REUT_A2080REUT_A2079REUT_A2078
RETL347834 RHE_CH01637RHE_CH03344RHE_CH01954RHE_CH01955RHE_CH02797RHE_CH02796
RDEN375451 RD1_0183RD1_1912RD1_2755RD1_2754RD1_1920RD1_1921
PSYR223283 PSPTO_4935PSPTO_4937PSPTO_4942PSPTO_4941PSPTO_4940PSPTO_4939
PSYR205918 PSYR_0579PSYR_0577PSYR_0572PSYR_0573PSYR_0574PSYR_0575
PSTU379731 PST_3659PST_3663PST_3668PST_3667PST_3666PST_3665
PSP56811 PSYCPRWF_2237PSYCPRWF_1810PSYCPRWF_0821PSYCPRWF_1868PSYCPRWF_2364
PSP312153 PNUC_1271PNUC_1281PNUC_1286PNUC_1285PNUC_1284PNUC_1283
PSP296591 BPRO_2700BPRO_2597BPRO_2603BPRO_2602BPRO_2601BPRO_2600
PPUT76869 PPUTGB1_4936PPUTGB1_4941PPUTGB1_4946PPUTGB1_4945PPUTGB1_4944PPUTGB1_4943
PPUT351746 PPUT_4760PPUT_4765PPUT_4770PPUT_4769PPUT_4768PPUT_4767
PPUT160488 PP_4880PP_4889PP_4894PP_4893PP_4892PP_4891
PPRO298386 PBPRA3341PBPRA3345PBPRA3350PBPRA3349PBPRA3348PBPRA3347
PNAP365044 PNAP_2438PNAP_1883PNAP_1877PNAP_1878PNAP_1879PNAP_1880
PMUL272843 PM1954PM0938PM0906PM0907PM0117PM0118
PMEN399739 PMEN_0643PMEN_0641PMEN_0635PMEN_0636PMEN_0637PMEN_0638
PLUM243265 PLU4575PLU4577PLU4581PLU4580PLU4579PLU4578
PING357804 PING_3417PING_3234PING_3238PING_3237PING_3236PING_3235
PHAL326442 PSHAA2981PSHAA0275PSHAA0271PSHAA0272PSHAA0273PSHAA0274
PFLU220664 PFL_0577PFL_0571PFL_0566PFL_0567PFL_0568PFL_0569
PFLU216595 PFLU0530PFLU0525PFLU0520PFLU0521PFLU0522PFLU0523
PFLU205922 PFL_0532PFL_0528PFL_0523PFL_0524PFL_0525PFL_0526
PENT384676 PSEEN4933PSEEN4938PSEEN4943PSEEN4942PSEEN4941PSEEN4940
PCRY335284 PCRYO_2420PCRYO_0645PCRYO_1493PCRYO_0396PCRYO_2451
PCAR338963 PCAR_2152PCAR_0203PCAR_1306PCAR_2043PCAR_2262PCAR_2263
PATL342610 PATL_0994PATL_0215PATL_3978PATL_3979PATL_3980PATL_3981
PARC259536 PSYC_2101PSYC_0677PSYC_0921PSYC_0355PSYC_2127
PAER208964 PA4937PA4938PA4944PA4943PA4942PA4941
PAER208963 PA14_65200PA14_65230PA14_65310PA14_65300PA14_65280PA14_65270
OCAR504832 OCAR_5782OCAR_7155OCAR_6100OCAR_6101OCAR_5278OCAR_5279
OANT439375 OANT_3672OANT_1231OANT_2208OANT_2207OANT_1794OANT_1795
NWIN323098 NWI_1713NWI_2965NWI_1449NWI_1450NWI_2349NWI_2348
NOCE323261 NOC_2897NOC_2585NOC_2590NOC_2589NOC_2588NOC_2587
NMUL323848 NMUL_A1953NMUL_A0441NMUL_A0447NMUL_A0446NMUL_A0445NMUL_A0444
NHAM323097 NHAM_2438NHAM_1123NHAM_1841NHAM_1842NHAM_2728NHAM_2727
NEUT335283 NEUT_1619NEUT_0967NEUT_0961NEUT_0962NEUT_0963NEUT_0964
NEUR228410 NE0350NE1281NE1287NE1286NE1285NE1284
NARO279238 SARO_1948SARO_2683SARO_1931SARO_1932SARO_3333SARO_3332
MXAN246197 MXAN_4210MXAN_2618MXAN_1356MXAN_3171MXAN_3172
MSUC221988 MS0473MS1621MS1518MS1519MS1619MS1620
MSP409 M446_6672M446_6845M446_5942M446_5943M446_1089M446_1088
MSP400668 MMWYL1_1407MMWYL1_2626MMWYL1_2632MMWYL1_2631MMWYL1_2630MMWYL1_2629
MSP266779 MESO_1353MESO_3159MESO_1613MESO_1612MESO_1749MESO_1748
MPET420662 MPE_A1983MPE_A1985MPE_A1991MPE_A1990MPE_A1989MPE_A1988
MMAR394221 MMAR10_1281MMAR10_1448MMAR10_1449MMAR10_2024MMAR10_2023
MMAG342108 AMB0877AMB3190AMB2372AMB2373AMB3489AMB3490
MLOT266835 MLR0841MLL3873MLR0402MLR0403MLL1455MLL1454
MFLA265072 MFLA_1626MFLA_1583MFLA_1589MFLA_1588MFLA_1587MFLA_1586
MEXT419610 MEXT_2380MEXT_0999MEXT_2824MEXT_2825MEXT_2658MEXT_2657
MCAP243233 MCA_1976MCA_1978MCA_1983MCA_1982MCA_1981MCA_1980
MAQU351348 MAQU_2388MAQU_2764MAQU_2769MAQU_2768MAQU_2767MAQU_2766
LSPH444177 BSPH_0480BSPH_4762BSPH_4371BSPH_4114BSPH_4113
LPNE400673 LPC_0111LPC_2858LPC_0010LPC_0011LPC_2860LPC_2859
LPNE297246 LPP0106LPP0550LPP0009LPP0010LPP0548LPP0549
LPNE297245 LPL0091LPL0526LPL0009LPL0010LPL0524LPL0525
LPNE272624 LPG0092LPG0486LPG0009LPG0010LPG0484LPG0485
LCHO395495 LCHO_2855LCHO_2857LCHO_2863LCHO_2862LCHO_2861LCHO_2860
KPNE272620 GKPORF_B3938GKPORF_B3936GKPORF_B3928GKPORF_B3929GKPORF_B3930GKPORF_B3931
JSP375286 MMA_2115MMA_2117MMA_2122MMA_2121MMA_2120MMA_2119
JSP290400 JANN_0356JANN_3179JANN_2244JANN_2245JANN_3173JANN_3172
ILOI283942 IL1943IL0337IL0333IL0334IL0335IL0336
HSOM228400 HSM_0017HSM_0287HSM_1074HSM_1075HSM_1785HSM_1784
HSOM205914 HS_0151HS_1328HS_1105HS_1104HS_0487HS_0488
HNEP81032 HNE_2280HNE_3124HNE_2006HNE_2005HNE_0469HNE_0470
HINF71421 HI_0861HI_1633HI_0411HI_0151HI_0150
HINF374930 CGSHIEE_07735CGSHIEE_05830CGSHIEE_00940CGSHIEE_02530CGSHIEE_02535
HINF281310 NTHI1030NTHI1407NTHI0535NTHI0239NTHI0237
HHAL349124 HHAL_0659HHAL_0660HHAL_0666HHAL_0665HHAL_0664HHAL_0663
HDUC233412 HD_0695HD_1807HD_0741HD_0740HD_1809HD_1808
HCHE349521 HCH_01709HCH_05377HCH_05383HCH_05382HCH_05381HCH_05380
HARS204773 HEAR1277HEAR1275HEAR1269HEAR1271HEAR1272HEAR1273
FTUL458234 FTA_0589FTA_0949FTA_0950FTA_0954FTA_0955
FTUL418136 FTW_0374FTW_1099FTW_1098FTW_1096FTW_1095
FTUL401614 FTN_1461FTN_1051FTN_1050FTN_1048FTN_1047
FTUL393115 FTF1553CFTF0630FTF0631FTF0633FTF0634
FTUL393011 FTH_0557FTH_0883FTH_0884FTH_0886FTH_0887
FTUL351581 FTL_0556FTL_0898FTL_0899FTL_0903FTL_0904
FRANT RNRHFQHFLXHFLKHFLC
FPHI484022 FPHI_1213FPHI_1538FPHI_1539FPHI_1542FPHI_1543
ESP42895 ENT638_0362ENT638_0360ENT638_0355ENT638_0356ENT638_0357ENT638_0358
ELIT314225 ELI_06115ELI_01995ELI_06260ELI_06255ELI_11330ELI_11335
EFER585054 EFER_4232EFER_4230EFER_4225EFER_4226EFER_4227EFER_4228
ECOO157 VACBPURAHFQHFLXHFLKHFLC
ECOL83334 ECS5155ECS5153ECS5148ECS5149ECS5150ECS5151
ECOL585397 ECED1_4964ECED1_4962ECED1_4957ECED1_4958ECED1_4959ECED1_4960
ECOL585057 ECIAI39_4644ECIAI39_4642ECIAI39_4637ECIAI39_4638ECIAI39_4639ECIAI39_4640
ECOL585056 ECUMN_4712ECUMN_4710ECUMN_4705ECUMN_4706ECUMN_4707ECUMN_4708
ECOL585055 EC55989_4734EC55989_4732EC55989_4727EC55989_4728EC55989_4729EC55989_4730
ECOL585035 ECS88_4765ECS88_4763ECS88_4758ECS88_4759ECS88_4760ECS88_4761
ECOL585034 ECIAI1_4412ECIAI1_4410ECIAI1_4405ECIAI1_4406ECIAI1_4407ECIAI1_4408
ECOL481805 ECOLC_3834ECOLC_3836ECOLC_3841ECOLC_3840ECOLC_3839ECOLC_3838
ECOL469008 ECBD_3855ECBD_3857ECBD_3862ECBD_3861ECBD_3860ECBD_3859
ECOL439855 ECSMS35_4650ECSMS35_4648ECSMS35_4643ECSMS35_4644ECSMS35_4645ECSMS35_4646
ECOL413997 ECB_04046ECB_04044ECB_04039ECB_04040ECB_04041ECB_04042
ECOL409438 ECSE_4476ECSE_4474ECSE_4469ECSE_4470ECSE_4471ECSE_4472
ECOL405955 APECO1_2213APECO1_2215APECO1_2219APECO1_2218APECO1_2217APECO1_2216
ECOL364106 UTI89_C4779UTI89_C4777UTI89_C4772UTI89_C4773UTI89_C4774UTI89_C4775
ECOL362663 ECP_4424ECP_4422ECP_4417ECP_4418ECP_4419ECP_4420
ECOL331111 ECE24377A_4738ECE24377A_4736ECE24377A_4730ECE24377A_4731ECE24377A_4732ECE24377A_4733
ECOL316407 ECK4175:JW5741:B4179ECK4173:JW4135:B4177ECK4168:JW4130:B4172ECK4169:JW4131:B4173ECK4170:JW4132:B4174ECK4171:JW4133:B4175
ECOL199310 C5263C5261C5256C5257C5258C5259
ECAR218491 ECA3622ECA3929ECA3934ECA3933ECA3932ECA3931
DVUL882 DVU_2467DVU_3204DVU_3236DVU_0684DVU_0683
DSHI398580 DSHI_0015DSHI_2742DSHI_1567DSHI_1566DSHI_2736DSHI_2735
DPSY177439 DP1906DP1480DP2918DP1092DP1091
DNOD246195 DNO_0601DNO_0600DNO_0595DNO_0596DNO_0597DNO_0598
DDES207559 DDE_2598DDE_0176DDE_0376DDE_2946DDE_2947
DARO159087 DARO_2972DARO_2974DARO_2980DARO_2979DARO_2978DARO_2977
CVIO243365 CV_3523CV_3528CV_3533CV_3532CV_3531CV_3530
CSP78 CAUL_1502CAUL_0658CAUL_2610CAUL_2611CAUL_3344CAUL_3345
CSP501479 CSE45_3557CSE45_1077CSE45_1387CSE45_1388CSE45_1025CSE45_1026
CSAL290398 CSAL_0886CSAL_1282CSAL_1277CSAL_1278CSAL_1279CSAL_1280
CRUT413404 RMAG_0530RMAG_0531RMAG_0207RMAG_0534RMAG_0533
CPSY167879 CPS_4617CPS_0330CPS_0325CPS_0326CPS_0327CPS_0328
CPER289380 CPR_1292CPR_2641CPR_1174CPR_1927CPR_1132
CPER195103 CPF_1502CPF_2958CPF_1361CPF_2215CPF_1316
CPER195102 CPE1296CPE2622CPE1158CPE1959CPE1060
CNOV386415 NT01CX_1417NT01CX_0905NT01CX_2108NT01CX_0101NT01CX_0101
CKLU431943 CKL_3376CKL_0087CKL_1577CKL_0994CKL_0994
CJAP155077 CJA_2995CJA_3073CJA_3079CJA_3078CJA_3077CJA_3076
CDIF272563 CD3164CD3655CD1974CD0788CD0881
CBOT536232 CLM_0282CLM_4121CLM_1954CLM_0641CLM_0641
CBOT515621 CLJ_B0280CLJ_B3955CLJ_B1975CLJ_B0616CLJ_B0616
CBOT508765 CLL_A3051CLL_A3576CLL_A1816CLL_A1004CLL_A1091
CBOT498213 CLD_0543CLD_0858CLD_2843CLD_1460CLD_0210CLD_0210
CBOT441772 CLI_0297CLI_3861CLI_1792CLI_0618CLI_0618
CBOT441771 CLC_0288CLC_3615CLC_1739CLC_0463CLC_0463
CBOT441770 CLB_0273CLB_3709CLB_1732CLB_0579CLB_0579
CBOT36826 CBO0232CBO3616CBO1797CBO0539CBO0539
CBLO291272 BPEN_086BPEN_082BPEN_083BPEN_084BPEN_085
CBEI290402 CBEI_0633CBEI_5074CBEI_2563CBEI_4227CBEI_1046
CACE272562 CAC0715CAC3593CAC1834CAC2299CAC1052CAC1052
BWEI315730 BCERKBAB4_4921BCERKBAB4_5260BCERKBAB4_3478BCERKBAB4_3472BCERKBAB4_1924BCERKBAB4_1924
BVIE269482 BCEP1808_1510BCEP1808_1728BCEP1808_1734BCEP1808_1733BCEP1808_1732BCEP1808_1731
BTRI382640 BT_1134BT_0567BT_1323BT_1322BT_1566BT_1565
BTHU412694 BALH_4622BALH_4974BALH_3340BALH_3334BALH_1834BALH_1834
BTHU281309 BT9727_4808BT9727_5148BT9727_3458BT9727_3452BT9727_1890BT9727_1890
BTHA271848 BTH_I2519BTH_I2245BTH_I2239BTH_I2240BTH_I2241BTH_I2242
BSUI470137 BSUIS_B0602BSUIS_B1158BSUIS_A1160BSUIS_A1159BSUIS_A1448BSUIS_A1447
BSUI204722 BR_A0605BR_1683BR_1111BR_1110BR_1397BR_1396
BSP376 BRADO4509BRADO5935BRADO3855BRADO3854BRADO5575BRADO5574
BSP36773 BCEP18194_A4688BCEP18194_A5102BCEP18194_A5108BCEP18194_A5107BCEP18194_A5106BCEP18194_A5105
BQUI283165 BQ06430BQ02800BQ05340BQ05350BQ08610BQ08600
BPSE320373 BURPS668_1798BURPS668_2178BURPS668_2184BURPS668_2183BURPS668_2182BURPS668_2181
BPSE320372 BURPS1710B_A2128BURPS1710B_A2545BURPS1710B_A2551BURPS1710B_A2550BURPS1710B_A2549BURPS1710B_A2548
BPSE272560 BPSL1874BPSL1524BPSL1518BPSL1519BPSL1520BPSL1521
BPET94624 BPET2707BPET2031BPET2025BPET2026BPET2027BPET2028
BPER257313 BP3526BP2188BP2193BP2192BP2191BP2190
BPAR257311 BPP2530BPP2844BPP2849BPP2848BPP2847BPP2846
BOVI236 GBOORFA0623GBOORF1691GBOORF1112GBOORF1111GBOORF1410GBOORF1409
BMEL359391 BAB2_0635BAB1_1695BAB1_1134BAB1_1133BAB1_1416BAB1_1415
BMEL224914 BMEII0665BMEI0351BMEI0872BMEI0873BMEI0610BMEI0611
BMAL320389 BMA10247_1021BMA10247_1095BMA10247_1101BMA10247_1100BMA10247_1099BMA10247_1098
BMAL320388 BMASAVP1_A1747BMASAVP1_A1823BMASAVP1_A1829BMASAVP1_A1828BMASAVP1_A1827BMASAVP1_A1826
BMAL243160 BMA_1263BMA_1333BMA_1340BMA_1339BMA_1338BMA_1337
BJAP224911 BLR5112BLL7052BSR4491BLR4492BLL6509BLL6508
BHEN283166 BH08150BH03790BH07490BH07500BH10960BH10950
BHAL272558 BH3553BH4028BH2365BH3155BH3154
BCIC186490 BCI_0576BCI_0577BCI_0581BCI_0580BCI_0579BCI_0578
BCER572264 BCA_5240BCA_5622BCA_3803BCA_3797BCA_2145BCA_2145
BCER405917 BCE_5232BCE_5617BCE_3740BCE_3734BCE_2146BCE_2146
BCER315749 BCER98_3673BCER98_4007BCER98_2390BCER98_2384BCER98_1560BCER98_1560
BCER288681 BCE33L4818BCE33L5164BCE33L3472BCE33L3465BCE33L1880BCE33L1880
BCER226900 BC_5129BC_5468BC_3713BC_3708BC_2057BC_2057
BCEN331272 BCEN2424_1546BCEN2424_1801BCEN2424_1807BCEN2424_1806BCEN2424_1805BCEN2424_1804
BCEN331271 BCEN_1066BCEN_6278BCEN_6272BCEN_6274BCEN_6275
BCAN483179 BCAN_B0606BCAN_A1721BCAN_A1130BCAN_A1129BCAN_A1429BCAN_A1428
BBRO257310 BB1975BB3165BB3170BB3169BB3168BB3167
BBAC360095 BARBAKC583_0844BARBAKC583_0285BARBAKC583_0624BARBAKC583_0625BARBAKC583_0924BARBAKC583_0923
BANT592021 BAA_5365BAA_5751BAA_3865BAA_1898BAA_2141BAA_2141
BANT568206 BAMEG_5388BAMEG_5768BAMEG_0791BAMEG_2763BAMEG_2516BAMEG_2516
BANT261594 GBAA5334GBAA5716GBAA3842GBAA1828GBAA2075GBAA2075
BANT260799 BAS4956BAS5320BAS3559BAS1693BAS1928BAS1928
BAMB398577 BAMMC406_1468BAMMC406_1712BAMMC406_1718BAMMC406_1717BAMMC406_1716BAMMC406_1715
BAMB339670 BAMB_1447BAMB_1739BAMB_1745BAMB_1744BAMB_1743BAMB_1742
BABO262698 BRUAB2_0619BRUAB1_1668BRUAB1_1117BRUAB1_1116BRUAB1_1392BRUAB1_1391
ASP76114 EBA1247EBA1249EBA1255EBA1254EBA1253EBA1252
ASP62977 ACIAD3179ACIAD1258ACIAD2373ACIAD3005ACIAD2967
ASP62928 AZO0939AZO0938AZO0932AZO0933AZO0934AZO0935
ASP232721 AJS_2568AJS_1175AJS_1176AJS_1177AJS_1178
ASAL382245 ASA_0699ASA_3369ASA_3368ASA_3367ASA_3366
APLE434271 APJL_1503APJL_1091APJL_2008APJL_2009APJL_1093APJL_1092
APLE416269 APL_1478APL_1075APL_1961APL_1962APL_1077APL_1076
AHYD196024 AHA_0702AHA_0924AHA_0925AHA_0926AHA_0927
AFER243159 AFE_1196AFE_1197AFE_1202AFE_1201AFE_1200AFE_1199
AEHR187272 MLG_0580MLG_0578MLG_0573MLG_0574MLG_0575MLG_0576
ADEH290397 ADEH_2432ADEH_1265ADEH_0203ADEH_3522ADEH_3523
ACAU438753 AZC_1859AZC_4670AZC_3080AZC_3079AZC_2569AZC_2570
ABOR393595 ABO_2193ABO_2197ABO_2203ABO_2202ABO_2201ABO_2200
ABAU360910 BAV2124BAV2333BAV2338BAV2337BAV2336BAV2335
AAVE397945 AAVE_2988AAVE_1429AAVE_1430AAVE_1431AAVE_1432


Organism features enriched in list (features available for 251 out of the 272 orgs in the list)
Feature    Pvalue       Num occurrences in list  Total num occurrences  
Arrangment:Pairs 0.006290859112
Disease:Bubonic_plague 0.006153166
Disease:Dysentery 0.006153166
Endospores:No 5.566e-1744211
GC_Content_Range4:0-40 5.369e-1253213
GC_Content_Range4:40-60 0.0045649110224
GC_Content_Range4:60-100 4.129e-788145
GC_Content_Range7:30-40 4.893e-1039166
GC_Content_Range7:50-60 0.000051664107
GC_Content_Range7:60-70 3.770e-987134
Genome_Size_Range5:0-2 1.698e-2119155
Genome_Size_Range5:2-4 1.779e-659197
Genome_Size_Range5:4-6 3.188e-31143184
Genome_Size_Range5:6-10 0.00145783047
Genome_Size_Range9:0-1 3.441e-6127
Genome_Size_Range9:1-2 3.095e-1518128
Genome_Size_Range9:2-3 1.453e-1022120
Genome_Size_Range9:4-5 6.173e-137396
Genome_Size_Range9:5-6 3.436e-147088
Genome_Size_Range9:6-8 0.00021952738
Gram_Stain:Gram_Neg 1.170e-26205333
Gram_Stain:Gram_Pos 3.557e-1328150
Habitat:Host-associated 0.000963972206
Habitat:Multiple 9.491e-6100178
Habitat:Specialized 0.00023541153
Motility:No 2.118e-1328151
Motility:Yes 2.093e-19168267
Optimal_temp.:- 0.0036371125257
Optimal_temp.:25-30 0.00002561719
Oxygen_Req:Anaerobic 0.000028426102
Oxygen_Req:Facultative 0.0001112107201
Pathogenic_in:Animal 0.00045574166
Shape:Coccus 2.008e-13782
Shape:Rod 7.044e-32216347
Shape:Sphere 0.0019502219
Shape:Spiral 0.0000496434
Temp._range:Hyperthermophilic 0.0015552323
Temp._range:Mesophilic 0.0043864215473
Temp._range:Psychrophilic 0.000467799
Temp._range:Thermophilic 5.118e-7235



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ORGANISMS CONTAINING AT MOST 1 GENES FROM THE GROUP:

Total number of orgs: 140
Effective number of orgs (counting one per cluster within 468 clusters): 121

Organism list
Homologs in each organism in the list
Features enriched in organism list


Follow (ncbi) link, when present, to find the set of organism features for each organism
Org ID  Org Name  # genes in group found in org  
WSUC273121 ncbi Wolinella succinogenes DSM 17401
UURE95667 Ureaplasma urealyticum serovar 130
UURE95664 Ureaplasma urealyticum serovar 100
UPAR505682 ncbi Ureaplasma parvum serovar 3 str. ATCC 278150
UMET351160 ncbi uncultured methanogenic archaeon RC-I0
TWHI218496 ncbi Tropheryma whipplei TW08/271
TWHI203267 ncbi Tropheryma whipplei Twist1
TVOL273116 ncbi Thermoplasma volcanium GSS10
TTHE300852 ncbi Thermus thermophilus HB81
TTHE262724 ncbi Thermus thermophilus HB271
TROS309801 ncbi Thermomicrobium roseum DSM 51591
TPEN368408 ncbi Thermofilum pendens Hrk 51
TDEN326298 ncbi Sulfurimonas denitrificans DSM 12510
TACI273075 ncbi Thermoplasma acidophilum DSM 17280
STOK273063 ncbi Sulfolobus tokodaii 71
SSP84588 ncbi Synechococcus sp. WH 81020
SSP64471 ncbi Synechococcus sp. CC93110
SSP387093 ncbi Sulfurovum sp. NBC37-10
SSP1131 Synechococcus sp. CC96050
SSOL273057 ncbi Sulfolobus solfataricus P21
SACI330779 ncbi Sulfolobus acidocaldarius DSM 6390
RSP357808 ncbi Roseiflexus sp. RS-11
RCAS383372 ncbi Roseiflexus castenholzii DSM 139411
PTOR263820 ncbi Picrophilus torridus DSM 97900
PSP117 Pirellula sp.1
PMAR93060 ncbi Prochlorococcus marinus MIT 92150
PMAR74547 ncbi Prochlorococcus marinus MIT 93131
PMAR74546 ncbi Prochlorococcus marinus MIT 93120
PMAR59920 ncbi Prochlorococcus marinus NATL2A0
PMAR167555 ncbi Prochlorococcus marinus NATL1A0
PMAR167546 ncbi Prochlorococcus marinus MIT 93010
PMAR167542 ncbi Prochlorococcus marinus MIT 95150
PMAR167540 Prochlorococcus marinus pastoris MED4ax0
PMAR167539 ncbi Prochlorococcus marinus marinus CCMP13751
PMAR146891 ncbi Prochlorococcus marinus AS96010
PISL384616 ncbi Pyrobaculum islandicum DSM 41840
PINT246198 Prevotella intermedia 171
PFUR186497 ncbi Pyrococcus furiosus DSM 36381
PAST100379 Onion yellows phytoplasma0
PAER178306 ncbi Pyrobaculum aerophilum IM20
NSP387092 ncbi Nitratiruptor sp. SB155-20
NSP103690 ncbi Nostoc sp. PCC 71201
NPHA348780 ncbi Natronomonas pharaonis DSM 21601
MTHE349307 ncbi Methanosaeta thermophila PT1
MSYN262723 ncbi Mycoplasma synoviae 530
MSTA339860 ncbi Methanosphaera stadtmanae DSM 30910
MSED399549 ncbi Metallosphaera sedula DSM 53480
MPNE272634 ncbi Mycoplasma pneumoniae M1290
MPEN272633 ncbi Mycoplasma penetrans HF-20
MMYC272632 ncbi Mycoplasma mycoides mycoides SC str. PG11
MMOB267748 ncbi Mycoplasma mobile 163K1
MMAZ192952 ncbi Methanosarcina mazei Go10
MMAR444158 ncbi Methanococcus maripaludis C61
MMAR426368 ncbi Methanococcus maripaludis C71
MMAR402880 ncbi Methanococcus maripaludis C51
MMAR368407 ncbi Methanoculleus marisnigri JR11
MMAR267377 ncbi Methanococcus maripaludis S21
MLAB410358 ncbi Methanocorpusculum labreanum Z1
MKAN190192 ncbi Methanopyrus kandleri AV191
MJAN243232 ncbi Methanocaldococcus jannaschii DSM 26610
MHYO295358 ncbi Mycoplasma hyopneumoniae 2321
MHYO262722 ncbi Mycoplasma hyopneumoniae 74481
MHYO262719 ncbi Mycoplasma hyopneumoniae J1
MHUN323259 ncbi Methanospirillum hungatei JF-10
MGEN243273 ncbi Mycoplasma genitalium G370
MFLO265311 ncbi Mesoplasma florum L11
MCAP340047 ncbi Mycoplasma capricolum capricolum ATCC 273431
MBUR259564 ncbi Methanococcoides burtonii DSM 62420
MBAR269797 ncbi Methanosarcina barkeri Fusaro0
MART243272 ncbi Mycoplasma arthritidis 158L3-10
MAEO419665 ncbi Methanococcus aeolicus Nankai-31
MACE188937 ncbi Methanosarcina acetivorans C2A0
LJOH257314 ncbi Lactobacillus johnsonii NCC 5331
LINT267671 ncbi Leptospira interrogans serovar Copenhageni str. Fiocruz L1-1301
LINT189518 ncbi Leptospira interrogans serovar Lai str. 566011
LHEL405566 ncbi Lactobacillus helveticus DPC 45711
LGAS324831 ncbi Lactobacillus gasseri ATCC 333231
LDEL390333 ncbi Lactobacillus delbrueckii bulgaricus ATCC 118421
LDEL321956 ncbi Lactobacillus delbrueckii bulgaricus ATCC BAA-3651
LBOR355277 ncbi Leptospira borgpetersenii serovar Hardjo-bovis JB1971
LBOR355276 ncbi Leptospira borgpetersenii serovar Hardjo-bovis L5501
LBIF456481 ncbi Leptospira biflexa serovar Patoc strain Patoc 1 (Paris)1
LBIF355278 ncbi Leptospira biflexa serovar Patoc strain Patoc 1 (Ames)1
LACI272621 ncbi Lactobacillus acidophilus NCFM1
IHOS453591 ncbi Ignicoccus hospitalis KIN4/I0
HSP64091 ncbi Halobacterium sp. NRC-11
HSAL478009 ncbi Halobacterium salinarum R11
HPYL85963 ncbi Helicobacter pylori J990
HPYL357544 ncbi Helicobacter pylori HPAG10
HPY ncbi Helicobacter pylori 266950
HMUK485914 ncbi Halomicrobium mukohataei DSM 122861
HMAR272569 ncbi Haloarcula marismortui ATCC 430491
HHEP235279 ncbi Helicobacter hepaticus ATCC 514490
HBUT415426 ncbi Hyperthermus butylicus DSM 54561
HAUR316274 ncbi Herpetosiphon aurantiacus ATCC 237791
HACI382638 ncbi Helicobacter acinonychis Sheeba0
FSUC59374 ncbi Fibrobacter succinogenes succinogenes S851
FMAG334413 ncbi Finegoldia magna ATCC 293281
DSP255470 ncbi Dehalococcoides sp. CBDB11
DSP216389 ncbi Dehalococcoides sp. BAV11
DGEO319795 ncbi Deinococcus geothermalis DSM 113001
DETH243164 ncbi Dehalococcoides ethenogenes 1951
CTRA471473 ncbi Chlamydia trachomatis L2b/UCH-1/proctitis1
CTRA471472 ncbi Chlamydia trachomatis 434/Bu1
CSUL444179 ncbi Candidatus Sulcia muelleri GWSS0
CPRO264201 ncbi Candidatus Protochlamydia amoebophila UWE251
CPNE182082 ncbi Chlamydophila pneumoniae TW-1830
CPNE138677 ncbi Chlamydophila pneumoniae J1380
CPNE115713 ncbi Chlamydophila pneumoniae CWL0290
CPNE115711 ncbi Chlamydophila pneumoniae AR390
CMUR243161 ncbi Chlamydia muridarum Nigg1
CMIC443906 ncbi Clavibacter michiganensis michiganensis NCPPB 3821
CMIC31964 ncbi Clavibacter michiganensis sepedonicus1
CMET456442 ncbi Candidatus Methanoregula boonei 6A80
CMAQ397948 ncbi Caldivirga maquilingensis IC-1670
CKOR374847 ncbi Candidatus Korarchaeum cryptofilum OPF80
CJEJ407148 ncbi Campylobacter jejuni jejuni 811160
CJEJ360109 ncbi Campylobacter jejuni doylei 269.970
CJEJ354242 ncbi Campylobacter jejuni jejuni 81-1760
CJEJ195099 ncbi Campylobacter jejuni RM12210
CJEJ192222 ncbi Campylobacter jejuni jejuni NCTC 111680
CHOM360107 ncbi Campylobacter hominis ATCC BAA-3810
CFET360106 ncbi Campylobacter fetus fetus 82-400
CFEL264202 ncbi Chlamydophila felis Fe/C-560
CCUR360105 ncbi Campylobacter curvus 525.920
CCON360104 ncbi Campylobacter concisus 138260
CCAV227941 ncbi Chlamydophila caviae GPIC1
CABO218497 ncbi Chlamydophila abortus S26/30
BXEN266265 ncbi Burkholderia xenovorans LB4000
BTHE226186 ncbi Bacteroides thetaiotaomicron VPI-54821
BLON206672 ncbi Bifidobacterium longum NCC27051
BFRA295405 ncbi Bacteroides fragilis YCH461
BFRA272559 ncbi Bacteroides fragilis NCTC 93431
BAPH372461 ncbi Buchnera aphidicola Cc (Cinara cedri)0
AYEL322098 ncbi Aster yellows witches-broom phytoplasma AYWB0
AURANTIMONAS Aurantimonas manganoxydans SI85-9A10
APER272557 ncbi Aeropyrum pernix K11
ALAI441768 ncbi Acholeplasma laidlawii PG-8A1
AFUL224325 ncbi Archaeoglobus fulgidus DSM 43041
ABUT367737 ncbi Arcobacter butzleri RM40180


Names of the homologs of the genes in the group in each of these orgs
  EG11259   EG10790   EG10438   EG10437   EG10436   EG10435   
WSUC273121 WS2056
UURE95667
UURE95664
UPAR505682
UMET351160
TWHI218496 TW0767
TWHI203267 TW792
TVOL273116
TTHE300852 TTHA0910
TTHE262724 TT_C0554
TROS309801 TRD_0861
TPEN368408 TPEN_0832
TDEN326298
TACI273075
STOK273063 ST2208
SSP84588
SSP64471
SSP387093
SSP1131
SSOL273057 SSO2195
SACI330779
RSP357808 ROSERS_2334
RCAS383372 RCAS_3144
PTOR263820
PSP117 RB7008
PMAR93060
PMAR74547 PMT1261
PMAR74546
PMAR59920
PMAR167555
PMAR167546
PMAR167542
PMAR167540
PMAR167539 PRO_0506
PMAR146891
PISL384616
PINT246198 PIN_A0570
PFUR186497 PF1534
PAST100379
PAER178306
NSP387092
NSP103690 ALL3862
NPHA348780 NP1126A
MTHE349307 MTHE_1730
MSYN262723
MSTA339860
MSED399549
MPNE272634
MPEN272633
MMYC272632 MSC_0856
MMOB267748 MMOB2650
MMAZ192952
MMAR444158 MMARC6_1623
MMAR426368 MMARC7_0290
MMAR402880 MMARC5_0557
MMAR368407 MEMAR_0502
MMAR267377 MMP1036
MLAB410358 MLAB_1703
MKAN190192 MK0847
MJAN243232
MHYO295358 MHP038
MHYO262722 MHP7448_0037
MHYO262719 MHJ_0033
MHUN323259
MGEN243273
MFLO265311 MFL209
MCAP340047 MCAP_0097
MBUR259564
MBAR269797
MART243272
MAEO419665 MAEO_0253
MACE188937
LJOH257314 LJ_0877
LINT267671 LIC_12245
LINT189518 LA1517
LHEL405566 LHV_0472
LGAS324831 LGAS_1303
LDEL390333 LDB1833
LDEL321956 LBUL_1705
LBOR355277 LBJ_1702
LBOR355276 LBL_1921
LBIF456481 LEPBI_I0479
LBIF355278 LBF_0461
LACI272621 LBA0449
IHOS453591
HSP64091 VNG0321G
HSAL478009 OE1490R
HPYL85963
HPYL357544
HPY
HMUK485914 HMUK_2990
HMAR272569 RRNAC1803
HHEP235279
HBUT415426 HBUT_1010
HAUR316274 HAUR_2926
HACI382638
FSUC59374 FSU2115
FMAG334413 FMG_0652
DSP255470 CBDBA691
DSP216389 DEHABAV1_0667
DGEO319795 DGEO_0460
DETH243164 DET_0737
CTRA471473 CTLON_0631
CTRA471472 CTL0634
CSUL444179
CPRO264201 PC1766
CPNE182082
CPNE138677
CPNE115713
CPNE115711
CMUR243161 TC_0658
CMIC443906 CMM_2019
CMIC31964 CMS1214
CMET456442
CMAQ397948
CKOR374847
CJEJ407148
CJEJ360109
CJEJ354242
CJEJ195099
CJEJ192222
CHOM360107
CFET360106
CFEL264202
CCUR360105
CCON360104
CCAV227941 CCA_00265
CABO218497
BXEN266265
BTHE226186 BT_3077
BLON206672 BL0549
BFRA295405 BF4570
BFRA272559 BF4357
BAPH372461
AYEL322098
AURANTIMONAS
APER272557 APE2153
ALAI441768 ACL_0837
AFUL224325 AF_1420
ABUT367737


Organism features enriched in list (features available for 132 out of the 140 orgs in the list)
Feature    Pvalue       Num occurrences in list  Total num occurrences  
Arrangment:Pairs 0.000022610112
Arrangment:Singles 0.000114483286
Disease:Leptospirosis 0.002536244
Disease:Pharyngitis 5.838e-688
Disease:bronchitis_and_pneumonitis 5.838e-688
Endospores:No 1.240e-671211
GC_Content_Range4:0-40 0.000057567213
GC_Content_Range4:60-100 0.000077017145
GC_Content_Range7:30-40 0.001314451166
GC_Content_Range7:50-60 0.000512612107
GC_Content_Range7:60-70 0.000079515134
Genome_Size_Range5:0-2 8.412e-2280155
Genome_Size_Range5:4-6 1.866e-1310184
Genome_Size_Range5:6-10 0.0061123447
Genome_Size_Range9:0-1 3.973e-61727
Genome_Size_Range9:1-2 1.412e-1463128
Genome_Size_Range9:4-5 5.542e-7596
Genome_Size_Range9:5-6 3.883e-6588
Gram_Stain:Gram_Neg 0.006047464333
Gram_Stain:Gram_Pos 3.423e-615150
Habitat:Aquatic 0.00469303091
Habitat:Multiple 0.000057323178
Habitat:Specialized 0.00022862353
Habitat:Terrestrial 0.0026655131
Optimal_temp.:37 0.007682933106
Oxygen_Req:Aerobic 0.005610631185
Oxygen_Req:Anaerobic 0.000229737102
Oxygen_Req:Facultative 0.000081428201
Oxygen_Req:Microaerophilic 0.00034291118
Pathogenic_in:Human 0.001041634213
Shape:Irregular_coccus 1.803e-71417
Shape:Oval 0.009877645
Shape:Rod 3.174e-1638347
Shape:Sphere 1.699e-71519
Shape:Spiral 5.836e-82234
Temp._range:Hyperthermophilic 0.00119471223
Temp._range:Thermophilic 0.00325901535



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ORGANISMS ENRICHED FOR GROUP:

Total number of orgs: 5
Effective number of orgs (counting one per cluster within 468 clusters): 5

Organism list
Homologs in each organism in the list
Features enriched in organism list


Follow (ncbi) link, when present, to find the set of organism features for each organism
Org ID  Org Name    Pvalue       # genes in tgt genome found in org  # genes in group found in org  
BCIC186490 Candidatus Baumannia cicadellinicola 0.00353316756
BQUI283165 ncbi Bartonella quintana Toulouse 0.00508187176
BBAC360095 ncbi Bartonella bacilliformis KC583 0.00512467186
BHEN283166 ncbi Bartonella henselae Houston-1 0.00870127846
BTRI382640 ncbi Bartonella tribocorum CIP 105476 0.00924957926


Names of the homologs of the genes in the group in each of these orgs
  EG11259   EG10790   EG10438   EG10437   EG10436   EG10435   
BCIC186490 BCI_0576BCI_0577BCI_0581BCI_0580BCI_0579BCI_0578
BQUI283165 BQ06430BQ02800BQ05340BQ05350BQ08610BQ08600
BBAC360095 BARBAKC583_0844BARBAKC583_0285BARBAKC583_0624BARBAKC583_0625BARBAKC583_0924BARBAKC583_0923
BHEN283166 BH08150BH03790BH07490BH07500BH10960BH10950
BTRI382640 BT_1134BT_0567BT_1323BT_1322BT_1566BT_1565


Organism features enriched in list (features available for 4 out of the 5 orgs in the list)
Feature    Pvalue       Num occurrences in list  Total num occurrences  
Disease:Bacillary_angiomatosis 0.000035422
Disease:Bartinellosis 0.006861111
Disease:Carrion's_disease 0.006861111
Disease:Cat_scratch_fever 0.006861111
Disease:Oroya_fever 0.006861111
Disease:Trench_fever 0.006861111
GC_Content_Range7:30-40 0.00640374166
Oxygen_Req:Aerobic 0.00991554185
Pathogenic_in:Rat 0.006861111



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ORGANISMS DEPLETED FOR GROUP:




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PHYLOGENETIC PROFILE SIMILARITY WITH KNOWN PATHWAYS:

Pathways or complexes with absolute value of Pearson coefficient with respect to candidate larger than 0.4 are listed below
The candidate is assumed to exist in orgs listed in section List of organisms containing most genes from the group


Pathway or complex  # Orgs containing it  # of those orgs also containing candidate  Pearson Coeff  
GLYCOCAT-PWY (glycogen degradation I)2462090.6727
COBALSYN-PWY (adenosylcobalamin salvage from cobinamide I)1951770.6411
PWY-5111 (CMP-KDO biosynthesis II (from D-arabinose 5-phosphate))3002270.6219
PWY-5918 (heme biosynthesis I)2722110.6019
TYRFUMCAT-PWY (tyrosine degradation I)1841650.6006
HEME-BIOSYNTHESIS-II (heme biosynthesis from uroporphyrinogen-III I)2862150.5854
KDO-LIPASYN-PWY (KDO2-lipid A biosynthesis I)2251850.5846
3-HYDROXYPHENYLACETATE-DEGRADATION-PWY (4-hydroxyphenylacetate degradation)1491420.5838
PWY4FS-7 (phosphatidylglycerol biosynthesis I (plastidic))2912160.5770
PWY0-1319 (CDP-diacylglycerol biosynthesis II)2962170.5688
PWY-1269 (CMP-KDO biosynthesis I)3252290.5643
PWY0-1241 (ADP-L-glycero-β-D-manno-heptose biosynthesis)2181780.5620
PHOSLIPSYN-PWY (phospholipid biosynthesis I)2902120.5540
PWY-4041 (γ-glutamyl cycle)2792060.5479
GLUTATHIONESYN-PWY (glutathione biosynthesis)3392310.5393
PWY-5028 (histidine degradation II)1301240.5356
PWY-5669 (phosphatidylethanolamine biosynthesis I)4162590.5316
NAGLIPASYN-PWY (lipid IVA biosynthesis)3482330.5284
PWY-5857 (ubiquinone-10 biosynthesis (prokaryotic))1831540.5265
PWY0-541 (cyclopropane fatty acid (CFA) biosynthesis)3002110.5183
PWY-5913 (TCA cycle variation IV)3012110.5154
AST-PWY (arginine degradation II (AST pathway))1201140.5056
PWY0-845 (superpathway of pyridoxal 5'-phosphate biosynthesis and salvage)3292210.5015
PWY-5148 (acyl-CoA hydrolysis)2271730.4969
PWY-5855 (ubiquinone-7 biosynthesis (prokaryotic))1911540.4956
PWY-5386 (methylglyoxal degradation I)3052090.4910
PWY0-862 (cis-dodecenoyl biosynthesis)3432240.4831
PYRIDOXSYN-PWY (pyridoxal 5'-phosphate biosynthesis I)4222530.4760
ECASYN-PWY (enterobacterial common antigen biosynthesis)1911500.4676
PWY0-1329 (succinate to cytochrome bo oxidase electron transfer)96940.4669
DAPLYSINESYN-PWY (lysine biosynthesis I)3422210.4662
PWY-5856 (ubiquinone-9 biosynthesis (prokaryotic))2551800.4520
GLUTAMINDEG-PWY (glutamine degradation I)1911470.4465
PLPSAL-PWY (pyridoxal 5'-phosphate salvage pathway)3742300.4408
CENTFERM-PWY (acetyl-CoA fermentation to butyrate I)2081550.4405
CHOLINE-BETAINE-ANA-PWY (choline degradation I)1351150.4404
BETSYN-PWY (glycine betaine biosynthesis I (Gram-negative bacteria))1381160.4345
PWY-46 (putrescine biosynthesis III)1381160.4345
P344-PWY (acrylonitrile degradation)2101550.4335
PWY-5084 (2-ketoglutarate dehydrogenase complex)3262090.4320
GLYOXYLATE-BYPASS (glyoxylate cycle)1691330.4310
PWY-561 (superpathway of glyoxylate cycle)1621290.4299
REDCITCYC (TCA cycle variation II)1741350.4258
GDPRHAMSYN-PWY (GDP-D-rhamnose biosynthesis)1561250.4250
ENTNER-DOUDOROFF-PWY (Entner-Doudoroff pathway I)2491730.4248
GLYCOLYSIS-E-D (superpathway of glycolysis and Entner-Doudoroff)2491730.4248
VALDEG-PWY (valine degradation I)2901920.4242
GALACTARDEG-PWY (D-galactarate degradation I)1511220.4235
PWY0-1335 (NADH to cytochrome bo oxidase electron transfer)112990.4223
UBISYN-PWY (ubiquinol-8 biosynthesis (prokaryotic))3982360.4193
PHENYLALANINE-DEG1-PWY (phenylalanine degradation I (aerobic))2891900.4142
GALACTCAT-PWY (D-galactonate degradation)104930.4130
LIPASYN-PWY (phospholipases)2121530.4129
GLUCARDEG-PWY (D-glucarate degradation I)1521210.4117
LIPA-CORESYN-PWY (Lipid A-core biosynthesis)1761340.4109
PWY-5340 (sulfate activation for sulfonation)3852290.4057
SO4ASSIM-PWY (sulfate reduction I (assimilatory))3111980.4027
PWY-5755 (4-hydroxybenzoate biosynthesis II (bacteria and fungi))81770.4007



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PAIRWISE GENOME CONTEXT SCORE MATRIX:

  EG10790   EG10438   EG10437   EG10436   EG10435   
EG112590.9992570.9989160.9990270.9990430.999099
EG107900.9993280.9993830.9996410.999691
EG104380.9999610.9997030.999675
EG104370.9997730.999716
EG104360.999994
EG10435



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PAIRWISE BLAST SCORES:

  EG11259   EG10790   EG10438   EG10437   EG10436   EG10435   
EG112590.0f0-----
EG10790-0.0f0----
EG10438--0.0f0---
EG10437---0.0f0--
EG10436----0.0f0-
EG10435-----0.0f0



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PATHWAYS OR PROTEIN COMPLEX MATCHES IN TARGET ORG:

For each case, all genes involved in the pathway or complex are listed. For each gene we list: a tag indicating whether the gene is part of the candidate list or not, the average and the minimum scores of the gene to the candidate list, the gene name, and its product names.

- CPLX0-2982 (HflB, integral membrane ATP-dependent zinc metallopeptidase) (degree of match pw to cand: 0.667, degree of match cand to pw: 0.333, average score: 0.943)
  Genes in pathway or complex:
             0.8507 0.7440 EG11506 (ftsH) EG11506-MONOMER (ATP-dependent zinc metalloprotease FtsH)
   *in cand* 0.9997 0.9990 EG10436 (hflK) EG10436-MONOMER (regulator of FtsH protease)
   *in cand* 0.9997 0.9991 EG10435 (hflC) EG10435-MONOMER (regulator of FtsH protease)
  Genes in candidate but not in this pathway or complex:
   *in cand* 0.9996 0.9990 EG10437 (hflX) EG10437-MONOMER (GTPase associated with the 50S subunit of the ribosome)
   *in cand* 0.9996 0.9989 EG10438 (hfq) EG10438-MONOMER (RNA-binding protein that affects many cellular processes; homolog of mammalian Sm/Sm-like proteins)
   *in cand* 0.9996 0.9993 EG10790 (purA) ADENYLOSUCCINATE-SYN-MONOMER (PurA)
   *in cand* 0.9992 0.9989 EG11259 (rnr) EG11259-MONOMER (RNase R)

- CPLX0-1321 (HflK-HflC complex; regulator of FtsH protease) (degree of match pw to cand: 1.000, degree of match cand to pw: 0.333, average score: 1.000)
  Genes in pathway or complex:
   *in cand* 0.9997 0.9991 EG10435 (hflC) EG10435-MONOMER (regulator of FtsH protease)
   *in cand* 0.9997 0.9990 EG10436 (hflK) EG10436-MONOMER (regulator of FtsH protease)
  Genes in candidate but not in this pathway or complex:
   *in cand* 0.9996 0.9990 EG10437 (hflX) EG10437-MONOMER (GTPase associated with the 50S subunit of the ribosome)
   *in cand* 0.9996 0.9989 EG10438 (hfq) EG10438-MONOMER (RNA-binding protein that affects many cellular processes; homolog of mammalian Sm/Sm-like proteins)
   *in cand* 0.9996 0.9993 EG10790 (purA) ADENYLOSUCCINATE-SYN-MONOMER (PurA)
   *in cand* 0.9992 0.9989 EG11259 (rnr) EG11259-MONOMER (RNase R)



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GENOME CONTEXT INFORMATION:

Each row corresponds to a replicon in an organism, each column to a gene in the candidate. The second column indicates whether the organims was included in the list used to compute the genome context scores or not. Some organisms are not included because they are phylogenetically too similar to others already in the list.
The number in the matrix indicate the position of the homolog of the gene in the replicon. All numbers are relative to the smaller one, which is assigned a position of zero. Two columns with the same number indicate that the two genes matched the same gene in that organism.

Genome browser links for gene clusters

The links below opens a genome browser BioCyc page for each cluster of genes in the target genome. These pages shows the central gene of the cluster in the target genome and its best homolog in the reference genomes, for the genomes that contain homologs for at least 75% of the genes in the group. Only one genome per phylogenetic cluster of organisms is shown, to keep the list smaller.

EG10435 EG10436 EG10437 EG10438 EG10790 EG11259 (centered at EG10435)


ORG:REPLICON:CIRC?\GENE  IN REF LIST  EG11259   EG10790   EG10438   EG10437   EG10436   EG10435   
408/623410/623332/623394/623345/623353/623
AAEO224324:0:Tyes13708310---
AAUR290340:2:Tyes---0573-
AAVE397945:0:Tyes1535-0123
ABAC204669:0:Tyes0-382381--
ABAU360910:0:Tyes0215220219218217
ABOR393595:0:Tyes05111098
ACAU438753:0:Tyes0285212331232716717
ACEL351607:0:Tyes-970-3260-
ACRY349163:8:Tyes0276017271726--
ADEH290397:0:Tyes22471070-033503351
AEHR187272:0:Tyes750123
AFER243159:0:Tyes016543
AFUL224325:0:Tyes-----0
AHYD196024:0:Tyes0-212213214215
ALAI441768:0:Tyes----0-
AMAR234826:0:Tyes----01
AMAR329726:9:Tyes-1931-0--
AMET293826:0:Tyes1008-0-553552
ANAE240017:0:Tyes-2004-0145658
AORE350688:0:Tyes0-575808--
APER272557:0:Tyes-----0
APHA212042:0:Tyes----01
APLE416269:0:Tyes421092592621
APLE434271:0:Tno433096496521
ASAL382245:5:Tyes0-2561256025592558
ASP1667:3:Tyes-0-9591680-
ASP232721:2:Tyes1342-0123
ASP62928:0:Tyes960123
ASP62977:0:Tyes17790103616101576-
ASP76114:2:Tyes039876
AVAR240292:3:Tyes-222-0-3205
BABO262698:0:Tno0-----
BABO262698:1:Tno-54410272271
BAFZ390236:2:Fyes----01
BAMB339670:3:Tno0297303302301300
BAMB398577:3:Tno0244250249248247
BAMY326423:0:Tyes137520290---
BANT260799:0:Tno3264363018530232232
BANT261594:2:Tno3249360318340228228
BANT568206:2:Tyes447748480196317171717
BANT592021:2:Tno3409378619570241241
BAPH198804:0:Tyes01--32
BBAC264462:0:Tyes0945-1293-2076
BBAC360095:0:Tyes5240321322599598
BBRO257310:0:Tyes011871192119111901189
BBUR224326:21:Fno----01
BCAN483179:0:Tno0-----
BCAN483179:1:Tno-57010288287
BCEN331271:0:Tno-50-12
BCEN331271:2:Tno0-----
BCEN331272:3:Tyes0254260259258257
BCER226900:1:Tyes300033311615161100
BCER288681:0:Tno294432921581157500
BCER315749:1:Tyes1998231675675000
BCER405917:1:Tyes292532921489148300
BCER572264:1:Tno303434071646164000
BCIC186490:0:Tyes015432
BCLA66692:0:Tyes83319280---
BFRA272559:1:Tyes0-----
BFRA295405:0:Tno0-----
BGAR290434:2:Fyes----01
BHAL272558:0:Tyes120316830-804803
BHEN283166:0:Tyes4120350351673672
BHER314723:0:Fyes----01
BJAP224911:0:Fyes62825810120352034
BLIC279010:0:Tyes16232300027--
BLON206672:0:Tyes-0----
BMAL243160:1:Tno06368676665
BMAL320388:1:Tno07480797877
BMAL320389:1:Tyes07278777675
BMEL224914:0:Tno0-----
BMEL224914:1:Tno-0538539271272
BMEL359391:0:Tno0-----
BMEL359391:1:Tno-51910262261
BOVI236:0:Tyes0-----
BOVI236:1:Tyes-48310248247
BPAR257311:0:Tno0288293292291290
BPER257313:0:Tyes123105432
BPET94624:0:Tyes68360123
BPSE272560:1:Tyes34060123
BPSE320372:1:Tno0414420419418417
BPSE320373:1:Tno0371377376375374
BPUM315750:0:Tyes1407206409--
BQUI283165:0:Tyes3290231232527526
BSP107806:2:Tyes01--32
BSP36773:2:Tyes0416422421420419
BSP376:0:Tyes63219881016391638
BSUB:0:Tyes1717241709--
BSUI204722:0:Tyes0-----
BSUI204722:1:Tyes-55310279278
BSUI470137:0:Tno0522----
BSUI470137:1:Tno--10278277
BTHA271848:1:Tno27860123
BTHE226186:0:Tyes0-----
BTHU281309:1:Tno289632361557155200
BTHU412694:1:Tno268230151427142100
BTRI382640:1:Tyes4910672671890889
BTUR314724:0:Fyes----01
BVIE269482:7:Tyes0215221220219218
BWEI315730:4:Tyes294232811496149000
CACE272562:1:Tyes0288711121569340340
CAULO:0:Tyes722137901--
CBEI290402:0:Tyes0436219003519410-
CBLO203907:0:Tyes-3-012
CBLO291272:0:Tno-40123
CBOT36826:1:Tno033461532-306306
CBOT441770:0:Tyes033031427-293293
CBOT441771:0:Tno031691425-172172
CBOT441772:1:Tno033831461-308308
CBOT498213:1:Tno0339114842855324324
CBOT508765:1:Tyes20292502805086-
CBOT515621:2:Tyes035421657-318318
CBOT536232:0:Tno036541605-341341
CBUR227377:1:Tyes860-1--
CBUR360115:1:Tno2691-0--
CBUR434922:2:Tno1371-0--
CCAV227941:1:Tyes---0--
CCHL340177:0:Tyes01070-424--
CDES477974:0:Tyes01848212743--
CDIF272563:1:Tyes241829171216091-
CDIP257309:0:Tyes-619-0--
CEFF196164:0:Fyes-785-0--
CGLU196627:0:Tyes-840-0--
CHUT269798:0:Tyes0--3324--
CHYD246194:0:Tyes023021068---
CJAP155077:0:Tyes07783828180
CJEI306537:0:Tyes-0-934--
CKLU431943:1:Tyes323801455-872872
CMIC31964:2:Tyes---0--
CMIC443906:2:Tyes---0--
CMUR243161:1:Tyes---0--
CNOV386415:0:Tyes48901171-16001600
CPEL335992:0:Tyes-607--10
CPER195102:1:Tyes236164398905-0
CPER195103:0:Tno184155145878-0
CPER289380:3:Tyes159142742782-0
CPHY357809:0:Tyes2310--032573256
CPRO264201:0:Fyes---0--
CPSY167879:0:Tyes417450123
CRUT413404:0:Tyes300301-0304303
CSAL290398:0:Tyes0400395396397398
CSP501479:7:Fyes0-----
CSP501479:8:Fyes-5135835901
CSP78:2:Tyes84901961196227102711
CTEP194439:0:Tyes0--861--
CTET212717:0:Tyes0--1688265265
CTRA471472:0:Tyes---0--
CTRA471473:0:Tno---0--
CVES412965:0:Tyes01--43
CVIO243365:0:Tyes0914131211
DARO159087:0:Tyes0410987
DDES207559:0:Tyes24610-20128092810
DETH243164:0:Tyes---0--
DGEO319795:1:Tyes0-----
DHAF138119:0:Tyes-34620---
DNOD246195:0:Tyes650123
DOLE96561:0:Tyes-1497--01
DPSY177439:2:Tyes842407-187410
DRAD243230:3:Tyes0---1761-
DRED349161:0:Tyes-20606220--
DSHI398580:5:Tyes027671576157527612760
DSP216389:0:Tyes---0--
DSP255470:0:Tno---0--
DVUL882:1:Tyes17732508-254010
ECAN269484:0:Tyes----01
ECAR218491:0:Tyes0308313312311310
ECHA205920:0:Tyes----01
ECOL199310:0:Tno750123
ECOL316407:0:Tno750123
ECOL331111:6:Tno860123
ECOL362663:0:Tno750123
ECOL364106:1:Tno750123
ECOL405955:2:Tyes640123
ECOL409438:6:Tyes750123
ECOL413997:0:Tno750123
ECOL439855:4:Tno750123
ECOL469008:0:Tno027654
ECOL481805:0:Tno027654
ECOL585034:0:Tno750123
ECOL585035:0:Tno750123
ECOL585055:0:Tno750123
ECOL585056:2:Tno750123
ECOL585057:0:Tno750123
ECOL585397:0:Tno750123
ECOL83334:0:Tno750123
ECOLI:0:Tno750123
ECOO157:0:Tno750123
EFAE226185:3:Tyes24410----
EFER585054:1:Tyes750123
ELIT314225:0:Tyes841087187018951896
ERUM254945:0:Tyes-0--267268
ERUM302409:0:Tno-0--267268
ESP42895:1:Tyes750123
FALN326424:0:Tyes-931-0--
FJOH376686:0:Tyes0--157--
FMAG334413:1:Tyes0-----
FNOD381764:0:Tyes60-0-580581
FNUC190304:0:Tyes1188---0-
FPHI484022:1:Tyes0-341342345346
FRANT:0:Tno866-0134
FSP106370:0:Tyes-868-0--
FSP1855:0:Tyes-0-1023--
FSUC59374:0:Tyes-0----
FTUL351581:0:Tno0-294295299300
FTUL393011:0:Tno0-269270271272
FTUL393115:0:Tyes848-0134
FTUL401614:0:Tyes410-4310
FTUL418136:0:Tno0-626625623622
FTUL458234:0:Tno0-292293294295
GBET391165:0:Tyes044320321--
GFOR411154:0:Tyes189--0--
GKAU235909:1:Tyes17682200011--
GMET269799:1:Tyes018766781176--
GOXY290633:5:Tyes-9770---
GSUL243231:0:Tyes47122879840--
GTHE420246:1:Tyes18032213011--
GURA351605:0:Tyes203101101239--
GVIO251221:0:Tyes-1121-1992-0
HARS204773:0:Tyes750123
HAUR316274:2:Tyes---0--
HBUT415426:0:Tyes-----0
HCHE349521:0:Tyes035293535353435333532
HDUC233412:0:Tyes09673938969968
HHAL349124:0:Tyes028765
HINF281310:0:Tyes7271050265-10
HINF374930:0:Tyes11828450-273274
HINF71421:0:Tno6961451249-10
HMAR272569:8:Tyes-----0
HMOD498761:0:Tyes-016001593--
HMUK485914:1:Tyes-----0
HNEP81032:0:Tyes178226091512151101
HSAL478009:4:Tyes-----0
HSOM205914:1:Tyes01183960959341342
HSOM228400:0:Tno02781079108017911790
HSP64091:2:Tno-----0
HWAL362976:1:Tyes----00
ILOI283942:0:Tyes165340123
JSP290400:1:Tyes028531901190228472846
JSP375286:0:Tyes038765
KPNE272620:2:Tyes1080123
KRAD266940:2:Fyes-1922-02977-
LACI272621:0:Tyes0-----
LBIF355278:2:Tyes--0---
LBIF456481:2:Tno--0---
LBOR355276:1:Tyes--0---
LBOR355277:1:Tno--0---
LBRE387344:2:Tyes580160--0-
LCAS321967:1:Tyes8300--920-
LCHO395495:0:Tyes039876
LDEL321956:0:Tyes0-----
LDEL390333:0:Tyes0-----
LGAS324831:0:Tyes0-----
LHEL405566:0:Tyes0-----
LINN272626:1:Tno255301296---
LINT189518:1:Tyes--0---
LINT267671:1:Tno--0---
LINT363253:3:Tyes3900--471472
LJOH257314:0:Tyes0-----
LLAC272622:5:Tyes01127----
LLAC272623:0:Tyes01010----
LMES203120:1:Tyes2600----
LMON169963:0:Tno246001255---
LMON265669:0:Tyes233601235---
LPLA220668:0:Tyes4122467--0-
LPNE272624:0:Tno8347601474475
LPNE297245:1:Fno8251501513514
LPNE297246:1:Fyes9753801536537
LPNE400673:0:Tno10127900127922791
LREU557436:0:Tyes3350----
LSAK314315:0:Tyes13890----
LSPH444177:1:Tyes04169-378035043503
LWEL386043:0:Tyes235101264---
LXYL281090:0:Tyes-603-0--
MABS561007:1:Tyes-1210-0--
MAEO419665:0:Tyes-----0
MAER449447:0:Tyes-0-548--
MAQU351348:2:Tyes0375380379378377
MAVI243243:0:Tyes-1144-0--
MBOV233413:0:Tno-0-2411--
MBOV410289:0:Tno-0-2365--
MCAP243233:0:Tyes027654
MCAP340047:0:Tyes0-----
MEXT419610:0:Tyes139701843184416771676
MFLA265072:0:Tyes4306543
MFLO265311:0:Tyes0-----
MGIL350054:3:Tyes-0-37543446-
MHYO262719:0:Tyes0-----
MHYO262722:0:Tno0-----
MHYO295358:0:Tno0-----
MKAN190192:0:Tyes-----0
MLAB410358:0:Tyes-----0
MLEP272631:0:Tyes-0-427--
MLOT266835:2:Tyes356271001845844
MMAG342108:0:Tyes023131495149626122613
MMAR267377:0:Tyes-----0
MMAR368407:0:Tyes-----0
MMAR394221:0:Tyes0-167168743742
MMAR402880:1:Tyes-----0
MMAR426368:0:Tyes-----0
MMAR444158:0:Tyes-----0
MMOB267748:0:Tyes0-----
MMYC272632:0:Tyes0-----
MPET420662:1:Tyes028765
MPUL272635:0:Tyes294----0
MSME246196:0:Tyes-0-1966--
MSP164756:1:Tno-0-16462616-
MSP164757:0:Tno-0-16302619-
MSP189918:2:Tyes-0-16742657-
MSP266779:3:Tyes01810263262398397
MSP400668:0:Tyes012491255125412531252
MSP409:2:Tyes538055484666466710
MSUC221988:0:Tyes011841078107911821183
MTBCDC:0:Tno-0-2553--
MTBRV:0:Tno-0-2398--
MTHE187420:0:Tyes----00
MTHE264732:0:Tyes01988822---
MTHE349307:0:Tyes-----0
MTUB336982:0:Tno-0-2360--
MTUB419947:0:Tyes-0-2477--
MVAN350058:0:Tyes-0-1743--
MXAN246197:0:Tyes27461216-017431744
NARO279238:0:Tyes187730114311430
NEUR228410:0:Tyes0944950949948947
NEUT335283:2:Tyes65260123
NFAR247156:2:Tyes-1564-0--
NGON242231:0:Tyes443700339--
NHAM323097:2:Tyes1279069569615641563
NMEN122586:0:Tno433670284--
NMEN122587:0:Tyes384620443--
NMEN272831:0:Tno348600407--
NMEN374833:0:Tno366670437--
NMUL323848:3:Tyes149906543
NOCE323261:1:Tyes31005432
NPHA348780:2:Tyes-----0
NSEN222891:0:Tyes----01
NSP103690:6:Tyes---0--
NSP35761:0:Tyes-----0
NSP35761:1:Tyes-1770-12590-
NWIN323098:0:Tyes270153201912911
OANT439375:4:Tyes0-----
OANT439375:5:Tyes-010071006584585
OCAR504832:0:Tyes504187382182201
OIHE221109:0:Tyes8041830013--
OTSU357244:0:Fyes----01
PABY272844:0:Tyes----00
PACN267747:0:Tyes-968-0--
PAER208963:0:Tyes039876
PAER208964:0:Tno039876
PARC259536:0:Tyes176432256501791-
PARS340102:0:Tyes----00
PATL342610:0:Tyes77903790379137923793
PCAR338963:0:Tyes197201113186420822083
PCRY335284:1:Tyes2018249109302049-
PDIS435591:0:Tyes56--0--
PENT384676:0:Tyes06111098
PFLU205922:0:Tyes1150123
PFLU216595:1:Tyes950123
PFLU220664:0:Tyes950123
PFUR186497:0:Tyes-----0
PGIN242619:0:Tyes0--144--
PHAL326442:1:Tyes274040123
PHOR70601:0:Tyes----00
PING357804:0:Tyes18004321
PINT246198:1:Tyes0-----
PLUM243265:0:Fyes026543
PLUT319225:0:Tyes0--809--
PMAR167539:0:Tyes-0----
PMAR74547:0:Tyes-0----
PMEN399739:0:Tyes1060123
PMOB403833:0:Tyes0-392-333332
PMUL272843:1:Tyes183782178979001
PNAP365044:8:Tyes56460123
PPEN278197:0:Tyes0---825-
PPRO298386:2:Tyes049876
PPUT160488:0:Tno0914131211
PPUT351746:0:Tyes071211109
PPUT76869:0:Tno071211109
PRUM264731:0:Tyes1500---0-
PSP117:0:Tyes---0--
PSP296591:2:Tyes10306543
PSP312153:0:Tyes01116151413
PSP56811:2:Tyes1441994010561584-
PSTU379731:0:Tyes049876
PSYR205918:0:Tyes950123
PSYR223283:2:Tyes027654
PTHE370438:0:Tyes--0784--
RAKA293614:0:Fyes----02
RALB246199:0:Tyes0-1381---
RBEL336407:0:Tyes----10
RBEL391896:0:Fno----01
RCAN293613:0:Fyes----01
RCAS383372:0:Tyes---0--
RCON272944:0:Tno----01
RDEN375451:4:Tyes016242402240116321633
RETL347834:5:Tyes0168931631711461145
REUT264198:3:Tyes0510987
REUT381666:2:Tyes049876
RFEL315456:2:Tyes----10
RFER338969:1:Tyes0-326325324323
RLEG216596:6:Tyes0202655355415121511
RMAS416276:1:Tyes----01
RMET266264:2:Tyes049876
RPAL258594:0:Tyes530171201904903
RPAL316055:0:Tyes1190194457757801
RPAL316056:0:Tyes0185034634710271026
RPAL316057:0:Tyes445131301769768
RPAL316058:0:Tyes1096015581557710711
RPOM246200:1:Tyes196707507491112
RPRO272947:0:Tyes----01
RRIC392021:0:Fno----01
RRIC452659:0:Tyes----01
RRUB269796:1:Tyes2091057757810961095
RSAL288705:0:Tyes-2656-01288-
RSOL267608:1:Tyes960123
RSP101510:3:Fyes-0-1227--
RSP357808:0:Tyes---0--
RSPH272943:4:Tyes136858910579578
RSPH349101:2:Tno135156610557556
RSPH349102:5:Tyes081614251426826827
RTYP257363:0:Tno----01
RXYL266117:0:Tyes-289--0-
SACI56780:0:Tyes-0-1498--
SAGA205921:0:Tno208526-0--
SAGA208435:0:Tno262595-0--
SAGA211110:0:Tyes259567-0--
SALA317655:1:Tyes7230764-17621761
SARE391037:0:Tyes-0-125130063006
SAUR158878:1:Tno78301310---
SAUR158879:1:Tno75601190---
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