CANDIDATE ID: 456

CANDIDATE ID: 456

NUMBER OF GENES: 6
AVERAGE SCORE:    9.9911747e-1 (range=[0.0,1.0])
AVERAGE MINIMUM BLAST P-VAL:    6.6666667e-1

Gene List
List of organisms containing most genes from the group
    Phylogenetic tree highlighting these organisms (opens new page)
List of organisms containing very few or no genes from the group
List of organisms enriched for group
List of organisms depleted for group
Phylogenetic profile similarity with known pathways
Pairwise genome context scores
Pairwise Blast scores
Pathway or protein complex matches in target organism
Genome context matrix
    Genes and their orthologs in genome browser BioCyc pages



GENE LIST:

- EG11857 (fdoH) (b3893)
   Products of gene:
     - FDOH-MONOMER (formate dehydrogenase-O, β subunit)
     - FORMATEDEHYDROGO-CPLX (formate dehydrogenase-O)
       Reactions:
        formate[periplasmic space] + a menaquinone + 2 H+  ->  CO2[periplasmic space] + a menaquinol + H+[periplasmic space]
         In pathways
         PWY0-1321 (formate to nitrate electron transfer)
         PWY0-1356 (formate to dimethyl sulfoxide electron transfer)
         PWY0-1355 (formate to trimethylamine N-oxide electron transfer)

- EG11856 (fdoI) (b3892)
   Products of gene:
     - FDOI-MONOMER (formate dehydrogenase-O, γ subunit)
     - FORMATEDEHYDROGO-CPLX (formate dehydrogenase-O)
       Reactions:
        formate[periplasmic space] + a menaquinone + 2 H+  ->  CO2[periplasmic space] + a menaquinol + H+[periplasmic space]
         In pathways
         PWY0-1321 (formate to nitrate electron transfer)
         PWY0-1356 (formate to dimethyl sulfoxide electron transfer)
         PWY0-1355 (formate to trimethylamine N-oxide electron transfer)

- EG11228 (fdnH) (b1475)
   Products of gene:
     - FDNH-MONOMER (formate dehydrogenase N, β subunit)
     - ALPHA-SUBUNIT-CPLX (trimer complex of formate dehydrogenase-N α, β and γ subunits)
     - FORMATEDEHYDROGN-CPLX (formate dehydrogenase-N)
       Reactions:
        formate[periplasmic space] + a menaquinone + 2 H+  ->  CO2[periplasmic space] + a menaquinol + H+[periplasmic space]
         In pathways
         PWY0-1321 (formate to nitrate electron transfer)
         PWY0-1356 (formate to dimethyl sulfoxide electron transfer)
         PWY0-1355 (formate to trimethylamine N-oxide electron transfer)

- EG10942 (selB) (b3590)
   Products of gene:
     - EG10942-MONOMER (selenocysteyl-tRNA-specific translation elongation factor)
       Reactions:
        GTP + H2O  ->  GDP + phosphate + H+
     - CPLX0-8053 (SelB-L-selenocysteinyl-tRNAsec)
       Regulatees:
        TU00355 (selAB)

- EG10941 (selA) (b3591)
   Products of gene:
     - EG10941-MONOMER (selenocysteine synthase monomer)
     - CPLX0-1141 (selenocysteine synthase)
       Reactions:
        selenophosphate + L-seryl-tRNAsec  ->  phosphate + L-selenocysteinyl-tRNAsec + H+
         In pathways
         PWY0-901 (selenocysteine biosynthesis I (bacteria))

- EG10284 (fdhE) (b3891)
   Products of gene:
     - EG10284-MONOMER (formate dehydrogenase formation protein)
     - CPLX0-7724 (formate dehydrogenase formation protein)



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ORGANISMS CONTAINING AT LEAST 5 GENES FROM THE GROUP:

Total number of orgs: 111
Effective number of orgs (counting one per cluster within 468 clusters): 65

Organism list
Homologs in each organism in the list
Features enriched in organism list


Follow (ncbi) link, when present, to find the set of organism features for each organism
Org ID  Org Name  # genes in group found in org  
YPSE349747 ncbi Yersinia pseudotuberculosis IP 317586
YPSE273123 ncbi Yersinia pseudotuberculosis IP 329536
YPES386656 ncbi Yersinia pestis Pestoides F6
YPES377628 ncbi Yersinia pestis Nepal5166
YPES360102 ncbi Yersinia pestis Antiqua6
YPES349746 ncbi Yersinia pestis Angola6
YPES214092 ncbi Yersinia pestis CO926
YPES187410 ncbi Yersinia pestis KIM 106
YENT393305 ncbi Yersinia enterocolitica enterocolitica 80816
XAUT78245 ncbi Xanthobacter autotrophicus Py25
WSUC273121 ncbi Wolinella succinogenes DSM 17405
SWOL335541 ncbi Syntrophomonas wolfei wolfei Goettingen6
STYP99287 ncbi Salmonella enterica enterica serovar Typhimurium str. LT26
STHE292459 ncbi Symbiobacterium thermophilum IAM 148636
SSP94122 ncbi Shewanella sp. ANA-36
SSON300269 ncbi Shigella sonnei Ss0466
SPRO399741 ncbi Serratia proteamaculans 5686
SPEA398579 ncbi Shewanella pealeana ATCC 7003456
SONE211586 ncbi Shewanella oneidensis MR-16
SMEL266834 ncbi Sinorhizobium meliloti 10216
SHIGELLA ncbi Shigella flexneri 2a str. 2457T6
SHAL458817 ncbi Shewanella halifaxensis HAW-EB46
SFUM335543 ncbi Syntrophobacter fumaroxidans MPOB5
SFLE373384 ncbi Shigella flexneri 5 str. 84016
SFLE198214 ncbi Shigella flexneri 2a str. 3016
SENT454169 ncbi Salmonella enterica enterica serovar Heidelberg str. SL4766
SENT321314 ncbi Salmonella enterica enterica serovar Choleraesuis str. SC-B676
SENT295319 ncbi Salmonella enterica enterica serovar Paratyphi A str. ATCC 91506
SENT220341 ncbi Salmonella enterica enterica serovar Typhi str. CT186
SENT209261 ncbi Salmonella enterica enterica serovar Typhi str. Ty26
SDYS300267 ncbi Shigella dysenteriae Sd1976
SBOY300268 ncbi Shigella boydii Sb2276
SBAL402882 ncbi Shewanella baltica OS1856
SBAL399599 ncbi Shewanella baltica OS1956
SACI56780 ncbi Syntrophus aciditrophicus SB6
REUT381666 ncbi Ralstonia eutropha H165
PTHE370438 ncbi Pelotomaculum thermopropionicum SI6
PSTU379731 ncbi Pseudomonas stutzeri A15016
PPUT76869 ncbi Pseudomonas putida GB-16
PPUT351746 ncbi Pseudomonas putida F16
PPUT160488 ncbi Pseudomonas putida KT24406
PMUL272843 ncbi Pasteurella multocida multocida Pm706
PLUM243265 ncbi Photorhabdus luminescens laumondii TTO16
PFLU205922 ncbi Pseudomonas fluorescens Pf0-16
PENT384676 ncbi Pseudomonas entomophila L486
PAER208964 ncbi Pseudomonas aeruginosa PAO16
PAER208963 ncbi Pseudomonas aeruginosa UCBPP-PA146
OCAR504832 ncbi Oligotropha carboxidovorans OM56
OANT439375 ncbi Ochrobactrum anthropi ATCC 491886
MTHE264732 ncbi Moorella thermoacetica ATCC 390735
MSUC221988 ncbi Mannheimia succiniciproducens MBEL55E6
MSP409 Methylobacterium sp.5
KPNE272620 ncbi Klebsiella pneumoniae pneumoniae MGH 785786
HINF71421 ncbi Haemophilus influenzae Rd KW206
HINF374930 ncbi Haemophilus influenzae PittEE6
HINF281310 ncbi Haemophilus influenzae 86-028NP6
HDUC233412 ncbi Haemophilus ducreyi 35000HP6
GURA351605 ncbi Geobacter uraniireducens Rf46
GMET269799 ncbi Geobacter metallireducens GS-155
ESP42895 Enterobacter sp.6
EFER585054 ncbi Escherichia fergusonii ATCC 354696
ECOO157 ncbi Escherichia coli O157:H7 EDL9336
ECOL83334 Escherichia coli O157:H76
ECOL585397 ncbi Escherichia coli ED1a6
ECOL585057 ncbi Escherichia coli IAI396
ECOL585056 ncbi Escherichia coli UMN0266
ECOL585055 ncbi Escherichia coli 559896
ECOL585035 ncbi Escherichia coli S886
ECOL585034 ncbi Escherichia coli IAI16
ECOL481805 ncbi Escherichia coli ATCC 87396
ECOL469008 ncbi Escherichia coli BL21(DE3)6
ECOL439855 ncbi Escherichia coli SMS-3-56
ECOL413997 ncbi Escherichia coli B str. REL6066
ECOL409438 ncbi Escherichia coli SE116
ECOL405955 ncbi Escherichia coli APEC O16
ECOL364106 ncbi Escherichia coli UTI896
ECOL362663 ncbi Escherichia coli 5366
ECOL331111 ncbi Escherichia coli E24377A6
ECOL316407 ncbi Escherichia coli K-12 substr. W31106
ECOL199310 ncbi Escherichia coli CFT0736
ECAR218491 ncbi Pectobacterium atrosepticum SCRI10435
DVUL882 ncbi Desulfovibrio vulgaris Hildenborough5
DRED349161 ncbi Desulfotomaculum reducens MI-15
DOLE96561 ncbi Desulfococcus oleovorans Hxd35
DHAF138119 ncbi Desulfitobacterium hafniense Y515
DDES207559 ncbi Desulfovibrio desulfuricans desulfuricans G206
DARO159087 ncbi Dechloromonas aromatica RCB6
CHYD246194 ncbi Carboxydothermus hydrogenoformans Z-29016
CDES477974 ncbi Candidatus Desulforudis audaxviator MP104C5
BXEN266265 ncbi Burkholderia xenovorans LB4006
BVIE269482 ncbi Burkholderia vietnamiensis G46
BTHA271848 ncbi Burkholderia thailandensis E2646
BSP36773 Burkholderia sp.6
BPSE320373 ncbi Burkholderia pseudomallei 6686
BPSE320372 ncbi Burkholderia pseudomallei 1710b6
BPSE272560 ncbi Burkholderia pseudomallei K962436
BMAL320389 ncbi Burkholderia mallei NCTC 102476
BMAL320388 ncbi Burkholderia mallei SAVP16
BMAL243160 ncbi Burkholderia mallei ATCC 233446
BCEN331272 ncbi Burkholderia cenocepacia HI24246
BCEN331271 ncbi Burkholderia cenocepacia AU 10545
BAMB398577 ncbi Burkholderia ambifaria MC40-66
BAMB339670 ncbi Burkholderia ambifaria AMMD6
APLE434271 ncbi Actinobacillus pleuropneumoniae serovar 3 str. JL036
APLE416269 ncbi Actinobacillus pleuropneumoniae L206
AHYD196024 Aeromonas hydrophila dhakensis5
ADEH290397 ncbi Anaeromyxobacter dehalogenans 2CP-C6
ACAU438753 ncbi Azorhizobium caulinodans ORS 5716
ABAU360910 ncbi Bordetella avium 197N6
ABAC204669 ncbi Candidatus Koribacter versatilis Ellin3456
AAEO224324 ncbi Aquifex aeolicus VF56


Names of the homologs of the genes in the group in each of these orgs
  EG11857   EG11856   EG11228   EG10942   EG10941   EG10284   
YPSE349747 YPSIP31758_4118YPSIP31758_4117YPSIP31758_4118YPSIP31758_4114YPSIP31758_4115YPSIP31758_4116
YPSE273123 YPTB3928YPTB3929YPTB3928YPTB3932YPTB3931YPTB3930
YPES386656 YPDSF_0036YPDSF_0037YPDSF_0036YPDSF_0040YPDSF_0039YPDSF_0038
YPES377628 YPN_3704YPN_3703YPN_3704YPN_3700YPN_3701YPN_3702
YPES360102 YPA_3028YPA_3029YPA_3028YPA_3032YPA_3031YPA_3030
YPES349746 YPANGOLA_A3769YPANGOLA_A3768YPANGOLA_A3769YPANGOLA_A3674YPANGOLA_A3766YPANGOLA_A3767
YPES214092 YPO4057YPO4056YPO4057YPO0203YPO4054YPO4055
YPES187410 Y4077Y4076Y4077Y4073Y4074Y4075
YENT393305 YE4134YE4133YE4134YE4130YE4131YE4132
XAUT78245 XAUT_0661XAUT_0660XAUT_0661XAUT_0658XAUT_0659
WSUC273121 WS0936WS1148WS0936WS0839WS0840
SWOL335541 SWOL_0798SWOL_1823SWOL_0798SWOL_2560SWOL_2561SWOL_0796
STYP99287 STM4036STM4035STM1569STM3682STM3683STM4034
STHE292459 STH3100STH112STH3100STH1073STH2591STH3102
SSP94122 SHEWANA3_2090SHEWANA3_2091SHEWANA3_0103SHEWANA3_0107SHEWANA3_0106SHEWANA3_2092
SSON300269 SSO_4062SSO_4061SSO_1649SSO_3818SSO_3817SSO_4060
SPRO399741 SPRO_0085SPRO_0086SPRO_0085SPRO_0091SPRO_0090SPRO_0087
SPEA398579 SPEA_0439SPEA_0440SPEA_0439SPEA_0443SPEA_0442SPEA_0441
SONE211586 SO_0102SO_0103SO_0102SO_0106SO_0105SO_0104
SMEL266834 SMA0005SMA0007SMA0005SMA0015SMA0011SMA0009
SHIGELLA FDOHFDOIFDNHSELBSELAFDHE
SHAL458817 SHAL_0494SHAL_0495SHAL_0494SHAL_0498SHAL_0497SHAL_0496
SFUM335543 SFUM_0037SFUM_0037SFUM_1220SFUM_3477SFUM_0038
SFLE373384 SFV_3602SFV_3603SFV_1746SFV_3943SFV_3942SFV_3604
SFLE198214 AAN45404.1AAN45403.1AAN43322.1AAN45075.1AAN45076.1AAN45402.1
SENT454169 SEHA_C4362SEHA_C4361SEHA_C1746SEHA_C4005SEHA_C4006SEHA_C4360
SENT321314 SCH_3926SCH_3925SCH_1570SCH_3606SCH_3607SCH_3924
SENT295319 SPA3878SPA3877SPA1299SPA3533SPA3534SPA3876
SENT220341 STY3841STY3842STY3841STY4114STY4113STY3843
SENT209261 T3584T3585T3584T3837T3836T3586
SDYS300267 SDY_3850SDY_3851SDY_1605SDY_4213SDY_4212SDY_3852
SBOY300268 SBO_3907SBO_3906SBO_1582SBO_3590SBO_3591SBO_3905
SBAL402882 SHEW185_0101SHEW185_0102SHEW185_0101SHEW185_0105SHEW185_0104SHEW185_0103
SBAL399599 SBAL195_0106SBAL195_0107SBAL195_0106SBAL195_0110SBAL195_0109SBAL195_0108
SACI56780 SYN_00604SYN_00632SYN_00604SYN_02191SYN_01801SYN_00288
REUT381666 H16_B1453H16_B1454H16_B1453H16_B0947H16_B1455
PTHE370438 PTH_1713PTH_2705PTH_1713PTH_1427PTH_1428PTH_1693
PSTU379731 PST_0165PST_0164PST_0165PST_0161PST_0162PST_2156
PPUT76869 PPUTGB1_0533PPUTGB1_0534PPUTGB1_0533PPUTGB1_0537PPUTGB1_0536PPUTGB1_0535
PPUT351746 PPUT_0524PPUT_0525PPUT_0524PPUT_0528PPUT_0527PPUT_0526
PPUT160488 PP_0490PP_0491PP_0490PP_0494PP_0493PP_0492
PMUL272843 PM0407PM0406PM0407PM1766PM1768PM0405
PLUM243265 PLU4888PLU4889PLU4888PLU4898PLU4897PLU4896
PFLU205922 PFL_2699PFL_2700PFL_2699PFL_2707PFL_2706PFL_2701
PENT384676 PSEEN0565PSEEN0566PSEEN0565PSEEN0569PSEEN0568PSEEN0567
PAER208964 PA4811PA4810PA4811PA4807PA4808PA4809
PAER208963 PA14_63580PA14_63570PA14_63580PA14_63530PA14_63540PA14_63550
OCAR504832 OCAR_6767OCAR_5161OCAR_5160OCAR_5165OCAR_5163OCAR_5162
OANT439375 OANT_2864OANT_2865OANT_2864OANT_2869OANT_2867OANT_2866
MTHE264732 MOTH_0451MOTH_0452MOTH_0451MOTH_2503MOTH_2504
MSUC221988 MS1029MS0889MS1029MS2339MS2338MS0843
MSP409 M446_5827M446_3089M446_5827M446_2923M446_2152
KPNE272620 GKPORF_B3530GKPORF_B3529GKPORF_B0955GKPORF_B3299GKPORF_B3300GKPORF_B3528
HINF71421 HI_0007HI_0008HI_0007HI_0709HI_0708HI_0009
HINF374930 CGSHIEE_03280CGSHIEE_03275CGSHIEE_03280CGSHIEE_08595CGSHIEE_08600CGSHIEE_03270
HINF281310 NTHI0010NTHI0011NTHI0010NTHI0836NTHI0835NTHI0012
HDUC233412 HD_0349HD_1111HD_0349HD_1993HD_1994HD_1110
GURA351605 GURA_3373GURA_3372GURA_3373GURA_0164GURA_4162GURA_3371
GMET269799 GMET_1060GMET_1060GMET_3415GMET_0061GMET_1004
ESP42895 ENT638_4086ENT638_4087ENT638_2053ENT638_0141ENT638_0140ENT638_4088
EFER585054 EFER_3884EFER_3885EFER_1491EFER_3584EFER_3585EFER_3886
ECOO157 FDOHFDOIFDNHSELBSELAFDHE
ECOL83334 ECS4819ECS4818ECS2079ECS4467ECS4468ECS4817
ECOL585397 ECED1_4596ECED1_4595ECED1_1626ECED1_4276ECED1_4277ECED1_4594
ECOL585057 ECIAI39_3106ECIAI39_3107ECIAI39_1738ECIAI39_4108ECIAI39_4109ECIAI39_3108
ECOL585056 ECUMN_4423ECUMN_4422ECUMN_1729ECUMN_4105ECUMN_4106ECUMN_4421
ECOL585055 EC55989_4370EC55989_4369EC55989_1607EC55989_4048EC55989_4049EC55989_4368
ECOL585035 ECS88_4341ECS88_4340ECS88_1568ECS88_4007ECS88_4008ECS88_4339
ECOL585034 ECIAI1_4097ECIAI1_4096ECIAI1_1479ECIAI1_3758ECIAI1_3759ECIAI1_4095
ECOL481805 ECOLC_4125ECOLC_4126ECOLC_2182ECOLC_0123ECOLC_0122ECOLC_4127
ECOL469008 ECBD_4132ECBD_4133ECBD_2164ECBD_0140ECBD_0139ECBD_4134
ECOL439855 ECSMS35_4279ECSMS35_4278ECSMS35_1699ECSMS35_3918ECSMS35_3919ECSMS35_4277
ECOL413997 ECB_03778ECB_03777ECB_01433ECB_03445ECB_03446ECB_03776
ECOL409438 ECSE_4179ECSE_4178ECSE_1564ECSE_3867ECSE_3868ECSE_4177
ECOL405955 APECO1_2572APECO1_2573APECO1_2572APECO1_2863APECO1_2862APECO1_2574
ECOL364106 UTI89_C4480UTI89_C4479UTI89_C1691UTI89_C4132UTI89_C4133UTI89_C4478
ECOL362663 ECP_4105ECP_4104ECP_1476ECP_3692ECP_3693ECP_4103
ECOL331111 ECE24377A_4422ECE24377A_4421ECE24377A_1657ECE24377A_4088ECE24377A_4089ECE24377A_4420
ECOL316407 ECK3886:JW3864:B3893ECK3885:JW3863:B3892ECK1469:JW1471:B1475ECK3579:JW3563:B3590ECK3580:JW3564:B3591ECK3884:JW3862:B3891
ECOL199310 C4843C4842C1906C4411C4412C4841
ECAR218491 ECA1407ECA1406ECA1407ECA4035ECA3002
DVUL882 DVU_2481DVU_2481DVU_0500DVU_2883DVU_0577
DRED349161 DRED_0462DRED_0462DRED_2185DRED_2186DRED_1117
DOLE96561 DOLE_1333DOLE_1333DOLE_0653DOLE_3060DOLE_1332
DHAF138119 DSY3100DSY3099DSY3100DSY3096DSY3097
DDES207559 DDE_0718DDE_0680DDE_0718DDE_3173DDE_3059DDE_0706
DARO159087 DARO_1817DARO_1816DARO_1817DARO_1810DARO_1814DARO_1815
CHYD246194 CHY_0794CHY_0795CHY_0794CHY_1802CHY_1803CHY_0796
CDES477974 DAUD_1579DAUD_1579DAUD_1094DAUD_1093DAUD_1577
BXEN266265 BXE_B2552BXE_B2551BXE_B2552BXE_B2548BXE_B2549BXE_B2550
BVIE269482 BCEP1808_4487BCEP1808_4488BCEP1808_4487BCEP1808_4491BCEP1808_4490BCEP1808_4489
BTHA271848 BTH_II0708BTH_II0709BTH_II0708BTH_II0712BTH_II0711BTH_II0710
BSP36773 BCEP18194_B2099BCEP18194_B2098BCEP18194_B2099BCEP18194_B2095BCEP18194_B2096BCEP18194_B2097
BPSE320373 BURPS668_A2395BURPS668_A2394BURPS668_A2395BURPS668_A2391BURPS668_A2392BURPS668_A2393
BPSE320372 BURPS1710B_B0860BURPS1710B_B0859BURPS1710B_B0860BURPS1710B_B0856BURPS1710B_B0857BURPS1710B_B0858
BPSE272560 BPSS1666BPSS1665BPSS1666BPSS1662BPSS1663BPSS1664
BMAL320389 BMA10247_A0572BMA10247_A0573BMA10247_A0572BMA10247_A0576BMA10247_A0575BMA10247_A0574
BMAL320388 BMASAVP1_1693BMASAVP1_1694BMASAVP1_1693BMASAVP1_1697BMASAVP1_1696BMASAVP1_1695
BMAL243160 BMA_A1682BMA_A1681BMA_A1682BMA_A1678BMA_A1678.1BMA_A1680
BCEN331272 BCEN2424_3985BCEN2424_3986BCEN2424_3985BCEN2424_3989BCEN2424_3988BCEN2424_3987
BCEN331271 BCEN_4381BCEN_4380BCEN_4381BCEN_4377BCEN_4379
BAMB398577 BAMMC406_3880BAMMC406_3881BAMMC406_3880BAMMC406_3884BAMMC406_3883BAMMC406_3882
BAMB339670 BAMB_3378BAMB_3379BAMB_3378BAMB_3382BAMB_3381BAMB_3380
APLE434271 APJL_0906APJL_0907APJL_0906APJL_1589APJL_1590APJL_0908
APLE416269 APL_0894APL_0895APL_0894APL_1561APL_1562APL_0896
AHYD196024 AHA_2525AHA_3061AHA_2525AHA_2509AHA_2508
ADEH290397 ADEH_3755ADEH_3756ADEH_3755ADEH_0419ADEH_0412ADEH_3757
ACAU438753 AZC_1158AZC_1157AZC_1158AZC_1153AZC_1155AZC_1156
ABAU360910 BAV3144BAV3145BAV3144BAV3148BAV3147BAV3146
ABAC204669 ACID345_0869ACID345_0870ACID345_0869ACID345_4628ACID345_4521ACID345_0456
AAEO224324 AQ_1046AQ_1049AQ_1046AQ_1033AQ_1031AQ_1051


Organism features enriched in list (features available for 106 out of the 111 orgs in the list)
Feature    Pvalue       Num occurrences in list  Total num occurrences  
Arrangment:Chains 0.0033585892
Arrangment:Pairs 0.004051430112
Disease:Bubonic_plague 0.000032166
Disease:Dysentery 0.000032166
Disease:Gastroenteritis 0.0030622713
Disease:Glanders_and_pneumonia 0.005871733
Disease:Melioidosis 0.005871733
Disease:Opportunistic_infections 0.000183755
Disease:chronic_bronchitis 0.005871733
Endospores:No 0.000427124211
GC_Content_Range4:0-40 3.342e-184213
GC_Content_Range4:40-60 3.202e-1171224
GC_Content_Range7:30-40 1.632e-124166
GC_Content_Range7:50-60 2.484e-1044107
Genome_Size_Range5:0-2 2.425e-105155
Genome_Size_Range5:2-4 0.000013918197
Genome_Size_Range5:4-6 3.234e-1366184
Genome_Size_Range5:6-10 0.00117971747
Genome_Size_Range9:1-2 1.015e-75128
Genome_Size_Range9:2-3 0.000475910120
Genome_Size_Range9:4-5 0.00011043196
Genome_Size_Range9:5-6 1.092e-73588
Genome_Size_Range9:6-8 0.00085031538
Gram_Stain:Gram_Neg 1.113e-1494333
Gram_Stain:Gram_Pos 7.807e-105150
Habitat:Aquatic 0.0038292891
Habitat:Multiple 0.002603244178
Motility:No 1.521e-78151
Motility:Yes 0.000013468267
Oxygen_Req:Aerobic 0.000011516185
Oxygen_Req:Facultative 1.276e-862201
Pathogenic_in:Human 0.002261851213
Pathogenic_in:No 0.000619927226
Shape:Coccus 4.080e-6282
Shape:Rod 1.873e-1192347



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ORGANISMS CONTAINING AT MOST 1 GENES FROM THE GROUP:

Total number of orgs: 412
Effective number of orgs (counting one per cluster within 468 clusters): 318

Organism list
Homologs in each organism in the list
Features enriched in organism list


Follow (ncbi) link, when present, to find the set of organism features for each organism
Org ID  Org Name  # genes in group found in org  
ZMOB264203 ncbi Zymomonas mobilis mobilis ZM41
XORY360094 ncbi Xanthomonas oryzae pv. oryzae PXO99A0
XORY342109 ncbi Xanthomonas oryzae pv. oryzae MAFF 3110180
XORY291331 ncbi Xanthomonas oryzae pv. oryzae KACC103310
XFAS405440 ncbi Xylella fastidiosa M120
XFAS183190 ncbi Xylella fastidiosa Temecula10
XFAS160492 ncbi Xylella fastidiosa 9a5c0
XCAM487884 Xanthomonas campestris pv. paulliniae0
XCAM316273 ncbi Xanthomonas campestris pv. vesicatoria str. 85-100
XCAM314565 ncbi Xanthomonas campestris pv. campestris str. 80040
XCAM190485 ncbi Xanthomonas campestris pv. campestris str. ATCC 339130
XAXO190486 ncbi Xanthomonas axonopodis pv. citri str. 3060
WPIP955 Wolbachia pipientis0
WPIP80849 Wolbachia endosymbiont of Brugia malayi0
UURE95667 Ureaplasma urealyticum serovar 131
UURE95664 Ureaplasma urealyticum serovar 101
UPAR505682 ncbi Ureaplasma parvum serovar 3 str. ATCC 278151
UMET351160 ncbi uncultured methanogenic archaeon RC-I0
TWHI218496 ncbi Tropheryma whipplei TW08/270
TWHI203267 ncbi Tropheryma whipplei Twist1
TVOL273116 ncbi Thermoplasma volcanium GSS10
TTUR377629 ncbi Teredinibacter turnerae T79010
TTHE300852 ncbi Thermus thermophilus HB80
TTHE262724 ncbi Thermus thermophilus HB270
TSP28240 Thermotoga sp.0
TSP1755 Thermoanaerobacter sp.0
TPSE340099 ncbi Thermoanaerobacter pseudethanolicus ATCC 332230
TPET390874 ncbi Thermotoga petrophila RKU-10
TPAL243276 ncbi Treponema pallidum pallidum Nichols0
TMAR243274 ncbi Thermotoga maritima MSB80
TLET416591 ncbi Thermotoga lettingae TMO0
TFUS269800 ncbi Thermobifida fusca YX1
TERY203124 ncbi Trichodesmium erythraeum IMS1010
TELO197221 ncbi Thermosynechococcus elongatus BP-10
TCRU317025 ncbi Thiomicrospira crunogena XCL-20
TACI273075 ncbi Thermoplasma acidophilum DSM 17280
STOK273063 ncbi Sulfolobus tokodaii 70
STHE322159 ncbi Streptococcus thermophilus LMD-90
STHE299768 ncbi Streptococcus thermophilus CNRZ10660
STHE264199 ncbi Streptococcus thermophilus LMG 183110
SSUI391296 ncbi Streptococcus suis 98HAH330
SSUI391295 ncbi Streptococcus suis 05ZYH330
SSP84588 ncbi Synechococcus sp. WH 81021
SSP64471 ncbi Synechococcus sp. CC93111
SSP387093 ncbi Sulfurovum sp. NBC37-10
SSP321332 ncbi Synechococcus sp. JA-2-3Ba(2-13)0
SSP321327 ncbi Synechococcus sp. JA-3-3Ab0
SSP1148 ncbi Synechocystis sp. PCC 68031
SSP1131 Synechococcus sp. CC96051
SSOL273057 ncbi Sulfolobus solfataricus P20
SSAP342451 ncbi Staphylococcus saprophyticus saprophyticus ATCC 153050
SRUB309807 ncbi Salinibacter ruber DSM 138551
SPYO370554 ncbi Streptococcus pyogenes MGAS107500
SPYO370553 ncbi Streptococcus pyogenes MGAS20960
SPYO370552 ncbi Streptococcus pyogenes MGAS102700
SPYO370551 ncbi Streptococcus pyogenes MGAS94290
SPYO319701 ncbi Streptococcus pyogenes MGAS61800
SPYO293653 ncbi Streptococcus pyogenes MGAS50050
SPYO286636 ncbi Streptococcus pyogenes MGAS103940
SPYO198466 ncbi Streptococcus pyogenes MGAS3150
SPYO193567 ncbi Streptococcus pyogenes SSI-10
SPYO186103 ncbi Streptococcus pyogenes MGAS82320
SPYO160490 ncbi Streptococcus pyogenes M1 GAS0
SPNE488221 ncbi Streptococcus pneumoniae 705850
SPNE487214 ncbi Streptococcus pneumoniae Hungary19A-60
SPNE487213 ncbi Streptococcus pneumoniae Taiwan19F-140
SPNE171101 ncbi Streptococcus pneumoniae R60
SPNE170187 ncbi Streptococcus pneumoniae G540
SPNE1313 Streptococcus pneumoniae0
SMUT210007 ncbi Streptococcus mutans UA1590
SMED366394 ncbi Sinorhizobium medicae WSM4191
SMAR399550 ncbi Staphylothermus marinus F10
SHAE279808 ncbi Staphylococcus haemolyticus JCSC14351
SGOR29390 Streptococcus gordonii Challis0
SGLO343509 ncbi Sodalis glossinidius morsitans1
SEPI176280 ncbi Staphylococcus epidermidis ATCC 122281
SEPI176279 ncbi Staphylococcus epidermidis RP62A1
SELO269084 ncbi Synechococcus elongatus PCC 63010
SDEN318161 ncbi Shewanella denitrificans OS2170
SDEG203122 ncbi Saccharophagus degradans 2-401
SCO ncbi Streptomyces coelicolor A3(2)1
SAUR93062 ncbi Staphylococcus aureus aureus COL1
SAUR93061 ncbi Staphylococcus aureus aureus NCTC 83251
SAUR426430 ncbi Staphylococcus aureus aureus Newman1
SAUR418127 ncbi Staphylococcus aureus aureus Mu31
SAUR367830 Staphylococcus aureus aureus USA3001
SAUR359787 ncbi Staphylococcus aureus aureus JH11
SAUR359786 ncbi Staphylococcus aureus aureus JH91
SAUR282459 ncbi Staphylococcus aureus aureus MSSA4761
SAUR282458 ncbi Staphylococcus aureus aureus MRSA2521
SAUR273036 ncbi Staphylococcus aureus RF1221
SAUR196620 ncbi Staphylococcus aureus aureus MW21
SAUR158879 ncbi Staphylococcus aureus aureus N3151
SAUR158878 ncbi Staphylococcus aureus aureus Mu501
SARE391037 ncbi Salinispora arenicola CNS-2050
SALA317655 ncbi Sphingopyxis alaskensis RB22560
SAGA211110 ncbi Streptococcus agalactiae NEM3160
SAGA208435 ncbi Streptococcus agalactiae 2603V/R0
SAGA205921 ncbi Streptococcus agalactiae A9090
SACI330779 ncbi Sulfolobus acidocaldarius DSM 6390
RTYP257363 ncbi Rickettsia typhi Wilmington1
RSPH349102 ncbi Rhodobacter sphaeroides ATCC 170250
RSPH349101 ncbi Rhodobacter sphaeroides ATCC 170290
RSPH272943 ncbi Rhodobacter sphaeroides 2.4.10
RSP357808 ncbi Roseiflexus sp. RS-11
RSP101510 ncbi Rhodococcus jostii RHA11
RSOL267608 ncbi Ralstonia solanacearum GMI10001
RSAL288705 ncbi Renibacterium salmoninarum ATCC 332090
RRUB269796 ncbi Rhodospirillum rubrum ATCC 111700
RRIC452659 ncbi Rickettsia rickettsii Iowa1
RRIC392021 ncbi Rickettsia rickettsii Sheila Smith1
RPRO272947 ncbi Rickettsia prowazekii Madrid E1
RPAL316058 ncbi Rhodopseudomonas palustris HaA20
RPAL316057 ncbi Rhodopseudomonas palustris BisB51
RPAL316056 ncbi Rhodopseudomonas palustris BisB181
RPAL316055 ncbi Rhodopseudomonas palustris BisA530
RPAL258594 ncbi Rhodopseudomonas palustris CGA0091
RMET266264 ncbi Ralstonia metallidurans CH341
RMAS416276 ncbi Rickettsia massiliae MTU51
RLEG216596 ncbi Rhizobium leguminosarum bv. viciae 38411
RFEL315456 ncbi Rickettsia felis URRWXCal21
REUT264198 ncbi Ralstonia eutropha JMP1341
RETL347834 ncbi Rhizobium etli CFN 421
RCON272944 ncbi Rickettsia conorii Malish 71
RCAS383372 ncbi Roseiflexus castenholzii DSM 139411
RCAN293613 ncbi Rickettsia canadensis McKiel1
RBEL391896 ncbi Rickettsia bellii OSU 85-3890
RBEL336407 ncbi Rickettsia bellii RML369-C0
RALB246199 Ruminococcus albus 80
RAKA293614 ncbi Rickettsia akari Hartford0
PTOR263820 ncbi Picrophilus torridus DSM 97900
PSYR223283 ncbi Pseudomonas syringae pv. tomato str. DC30001
PSYR205918 ncbi Pseudomonas syringae pv. syringae B728a1
PSP56811 Psychrobacter sp.0
PSP312153 ncbi Polynucleobacter necessarius asymbioticus QLW-P1DMWA-11
PSP296591 ncbi Polaromonas sp. JS6661
PSP117 Pirellula sp.0
PRUM264731 ncbi Prevotella ruminicola 230
PPEN278197 ncbi Pediococcus pentosaceus ATCC 257451
PNAP365044 ncbi Polaromonas naphthalenivorans CJ21
PMOB403833 ncbi Petrotoga mobilis SJ950
PMEN399739 ncbi Pseudomonas mendocina ymp0
PMAR93060 ncbi Prochlorococcus marinus MIT 92151
PMAR74547 ncbi Prochlorococcus marinus MIT 93131
PMAR74546 ncbi Prochlorococcus marinus MIT 93121
PMAR59920 ncbi Prochlorococcus marinus NATL2A1
PMAR167555 ncbi Prochlorococcus marinus NATL1A1
PMAR167546 ncbi Prochlorococcus marinus MIT 93011
PMAR167542 ncbi Prochlorococcus marinus MIT 95151
PMAR167540 Prochlorococcus marinus pastoris MED4ax1
PMAR167539 ncbi Prochlorococcus marinus marinus CCMP13751
PMAR146891 ncbi Prochlorococcus marinus AS96011
PLUT319225 ncbi Chlorobium luteolum DSM 2730
PINT246198 Prevotella intermedia 170
PING357804 ncbi Psychromonas ingrahamii 370
PHOR70601 ncbi Pyrococcus horikoshii OT30
PHAL326442 ncbi Pseudoalteromonas haloplanktis TAC1250
PGIN242619 ncbi Porphyromonas gingivalis W830
PFUR186497 ncbi Pyrococcus furiosus DSM 36380
PFLU220664 ncbi Pseudomonas fluorescens Pf-50
PFLU216595 ncbi Pseudomonas fluorescens SBW250
PDIS435591 ncbi Parabacteroides distasonis ATCC 85030
PCRY335284 ncbi Psychrobacter cryohalolentis K51
PATL342610 ncbi Pseudoalteromonas atlantica T6c0
PAST100379 Onion yellows phytoplasma0
PARC259536 ncbi Psychrobacter arcticus 273-40
PABY272844 ncbi Pyrococcus abyssi GE50
OTSU357244 ncbi Orientia tsutsugamushi Boryong0
OIHE221109 ncbi Oceanobacillus iheyensis HTE8310
NWIN323098 ncbi Nitrobacter winogradskyi Nb-2551
NSP387092 ncbi Nitratiruptor sp. SB155-21
NSP103690 ncbi Nostoc sp. PCC 71200
NSEN222891 ncbi Neorickettsia sennetsu Miyayama0
NPHA348780 ncbi Natronomonas pharaonis DSM 21600
NOCE323261 ncbi Nitrosococcus oceani ATCC 197070
NMUL323848 ncbi Nitrosospira multiformis ATCC 251961
NMEN374833 ncbi Neisseria meningitidis 0534420
NMEN272831 ncbi Neisseria meningitidis FAM180
NMEN122587 ncbi Neisseria meningitidis Z24910
NMEN122586 ncbi Neisseria meningitidis MC580
NHAM323097 ncbi Nitrobacter hamburgensis X141
NGON242231 ncbi Neisseria gonorrhoeae FA 10900
NFAR247156 ncbi Nocardia farcinica IFM 101521
NEUT335283 ncbi Nitrosomonas eutropha C911
NEUR228410 ncbi Nitrosomonas europaea ATCC 197181
NARO279238 ncbi Novosphingobium aromaticivorans DSM 124441
MVAN350058 ncbi Mycobacterium vanbaalenii PYR-10
MTUB419947 ncbi Mycobacterium tuberculosis H37Ra0
MTUB336982 ncbi Mycobacterium tuberculosis F110
MTHE349307 ncbi Methanosaeta thermophila PT0
MTHE187420 ncbi Methanothermobacter thermautotrophicus Delta H0
MTBRV ncbi Mycobacterium tuberculosis H37Rv0
MTBCDC ncbi Mycobacterium tuberculosis CDC15510
MSYN262723 ncbi Mycoplasma synoviae 530
MSTA339860 ncbi Methanosphaera stadtmanae DSM 30910
MSP400668 ncbi Marinomonas sp. MWYL10
MSP266779 ncbi Chelativorans sp. BNC11
MSED399549 ncbi Metallosphaera sedula DSM 53480
MPUL272635 ncbi Mycoplasma pulmonis UAB CTIP0
MPNE272634 ncbi Mycoplasma pneumoniae M1290
MPEN272633 ncbi Mycoplasma penetrans HF-20
MMYC272632 ncbi Mycoplasma mycoides mycoides SC str. PG10
MMOB267748 ncbi Mycoplasma mobile 163K0
MMAZ192952 ncbi Methanosarcina mazei Go11
MMAR444158 ncbi Methanococcus maripaludis C61
MMAR426368 ncbi Methanococcus maripaludis C71
MMAR402880 ncbi Methanococcus maripaludis C51
MMAR394221 ncbi Maricaulis maris MCS101
MMAR368407 ncbi Methanoculleus marisnigri JR10
MMAR267377 ncbi Methanococcus maripaludis S21
MLEP272631 ncbi Mycobacterium leprae TN0
MLAB410358 ncbi Methanocorpusculum labreanum Z0
MKAN190192 ncbi Methanopyrus kandleri AV191
MJAN243232 ncbi Methanocaldococcus jannaschii DSM 26611
MHYO295358 ncbi Mycoplasma hyopneumoniae 2320
MHYO262722 ncbi Mycoplasma hyopneumoniae 74480
MHYO262719 ncbi Mycoplasma hyopneumoniae J0
MHUN323259 ncbi Methanospirillum hungatei JF-10
MGIL350054 ncbi Mycobacterium gilvum PYR-GCK0
MGEN243273 ncbi Mycoplasma genitalium G370
MFLO265311 ncbi Mesoplasma florum L10
MFLA265072 ncbi Methylobacillus flagellatus KT1
MEXT419610 ncbi Methylobacterium extorquens PA11
MCAP340047 ncbi Mycoplasma capricolum capricolum ATCC 273430
MBUR259564 ncbi Methanococcoides burtonii DSM 62420
MBOV410289 ncbi Mycobacterium bovis BCG str. Pasteur 1173P20
MBOV233413 ncbi Mycobacterium bovis AF2122/970
MBAR269797 ncbi Methanosarcina barkeri Fusaro0
MART243272 ncbi Mycoplasma arthritidis 158L3-10
MAQU351348 ncbi Marinobacter aquaeolei VT80
MAER449447 ncbi Microcystis aeruginosa NIES-8430
MAEO419665 ncbi Methanococcus aeolicus Nankai-31
MACE188937 ncbi Methanosarcina acetivorans C2A0
MABS561007 ncbi Mycobacterium abscessus ATCC 199770
LXYL281090 ncbi Leifsonia xyli xyli CTCB070
LWEL386043 ncbi Listeria welshimeri serovar 6b str. SLCC53340
LSPH444177 ncbi Lysinibacillus sphaericus C3-410
LSAK314315 ncbi Lactobacillus sakei sakei 23K0
LREU557436 ncbi Lactobacillus reuteri DSM 200160
LPNE400673 ncbi Legionella pneumophila Corby0
LPNE297246 ncbi Legionella pneumophila Paris0
LPNE297245 ncbi Legionella pneumophila Lens0
LPNE272624 ncbi Legionella pneumophila pneumophila Philadelphia 10
LPLA220668 ncbi Lactobacillus plantarum WCFS10
LMON265669 ncbi Listeria monocytogenes 4b F23650
LMON169963 ncbi Listeria monocytogenes EGD-e0
LMES203120 ncbi Leuconostoc mesenteroides mesenteroides ATCC 82930
LLAC272623 ncbi Lactococcus lactis lactis Il14030
LLAC272622 ncbi Lactococcus lactis cremoris SK110
LJOH257314 ncbi Lactobacillus johnsonii NCC 5330
LINT267671 ncbi Leptospira interrogans serovar Copenhageni str. Fiocruz L1-1300
LINT189518 ncbi Leptospira interrogans serovar Lai str. 566010
LINN272626 ncbi Listeria innocua Clip112620
LHEL405566 ncbi Lactobacillus helveticus DPC 45711
LGAS324831 ncbi Lactobacillus gasseri ATCC 333230
LDEL390333 ncbi Lactobacillus delbrueckii bulgaricus ATCC 118421
LDEL321956 ncbi Lactobacillus delbrueckii bulgaricus ATCC BAA-3651
LCHO395495 ncbi Leptothrix cholodnii SP-61
LCAS321967 ncbi Lactobacillus casei ATCC 3340
LBRE387344 ncbi Lactobacillus brevis ATCC 3670
LBOR355277 ncbi Leptospira borgpetersenii serovar Hardjo-bovis JB1970
LBOR355276 ncbi Leptospira borgpetersenii serovar Hardjo-bovis L5500
LBIF456481 ncbi Leptospira biflexa serovar Patoc strain Patoc 1 (Paris)0
LBIF355278 ncbi Leptospira biflexa serovar Patoc strain Patoc 1 (Ames)0
LACI272621 ncbi Lactobacillus acidophilus NCFM0
JSP375286 ncbi Janthinobacterium sp. Marseille1
ILOI283942 ncbi Idiomarina loihiensis L2TR0
IHOS453591 ncbi Ignicoccus hospitalis KIN4/I0
HWAL362976 ncbi Haloquadratum walsbyi DSM 167900
HSP64091 ncbi Halobacterium sp. NRC-10
HSOM205914 ncbi Haemophilus somnus 129PT1
HSAL478009 ncbi Halobacterium salinarum R10
HPYL85963 ncbi Helicobacter pylori J991
HPYL357544 ncbi Helicobacter pylori HPAG11
HPY ncbi Helicobacter pylori 266951
HMUK485914 ncbi Halomicrobium mukohataei DSM 122860
HMAR272569 ncbi Haloarcula marismortui ATCC 430490
HCHE349521 ncbi Hahella chejuensis KCTC 23960
HACI382638 ncbi Helicobacter acinonychis Sheeba1
GVIO251221 ncbi Gloeobacter violaceus PCC 74210
GTHE420246 ncbi Geobacillus thermodenitrificans NG80-20
GOXY290633 ncbi Gluconobacter oxydans 621H0
GKAU235909 ncbi Geobacillus kaustophilus HTA4260
GFOR411154 ncbi Gramella forsetii KT08030
GBET391165 ncbi Granulibacter bethesdensis CGDNIH10
FTUL458234 ncbi Francisella tularensis holarctica FTNF002-001
FTUL418136 ncbi Francisella tularensis tularensis WY96-34181
FTUL401614 ncbi Francisella novicida U1121
FTUL393115 ncbi Francisella tularensis tularensis FSC1980
FTUL393011 ncbi Francisella tularensis holarctica OSU181
FTUL351581 Francisella tularensis holarctica FSC2001
FSUC59374 ncbi Fibrobacter succinogenes succinogenes S850
FRANT ncbi Francisella tularensis tularensis SCHU S40
FPHI484022 ncbi Francisella philomiragia philomiragia ATCC 250170
FNUC190304 ncbi Fusobacterium nucleatum nucleatum ATCC 255861
FNOD381764 ncbi Fervidobacterium nodosum Rt17-B10
FJOH376686 ncbi Flavobacterium johnsoniae UW1010
ERUM302409 ncbi Ehrlichia ruminantium Gardel0
ERUM254945 ncbi Ehrlichia ruminantium Welgevonden0
ELIT314225 ncbi Erythrobacter litoralis HTCC25941
ECHA205920 ncbi Ehrlichia chaffeensis Arkansas0
ECAN269484 ncbi Ehrlichia canis Jake0
DRAD243230 ncbi Deinococcus radiodurans R10
DNOD246195 ncbi Dichelobacter nodosus VCS1703A1
DGEO319795 ncbi Deinococcus geothermalis DSM 113000
CVES412965 ncbi Candidatus Vesicomyosocius okutanii HA1
CTRA471473 ncbi Chlamydia trachomatis L2b/UCH-1/proctitis0
CTRA471472 ncbi Chlamydia trachomatis 434/Bu0
CTET212717 ncbi Clostridium tetani E880
CTEP194439 ncbi Chlorobium tepidum TLS0
CSUL444179 ncbi Candidatus Sulcia muelleri GWSS0
CSP78 Caulobacter sp.0
CSAL290398 ncbi Chromohalobacter salexigens DSM 30431
CRUT413404 ncbi Candidatus Ruthia magnifica Cm (Calyptogena magnifica)1
CPSY167879 ncbi Colwellia psychrerythraea 34H0
CPRO264201 ncbi Candidatus Protochlamydia amoebophila UWE250
CPNE182082 ncbi Chlamydophila pneumoniae TW-1830
CPNE138677 ncbi Chlamydophila pneumoniae J1380
CPNE115713 ncbi Chlamydophila pneumoniae CWL0290
CPNE115711 ncbi Chlamydophila pneumoniae AR390
CPHY357809 ncbi Clostridium phytofermentans ISDg0
CPEL335992 ncbi Candidatus Pelagibacter ubique HTCC10620
CNOV386415 ncbi Clostridium novyi NT0
CMUR243161 ncbi Chlamydia muridarum Nigg0
CMIC443906 ncbi Clavibacter michiganensis michiganensis NCPPB 3820
CMIC31964 ncbi Clavibacter michiganensis sepedonicus0
CMET456442 ncbi Candidatus Methanoregula boonei 6A80
CMAQ397948 ncbi Caldivirga maquilingensis IC-1670
CKLU431943 ncbi Clostridium kluyveri DSM 5550
CJEI306537 ncbi Corynebacterium jeikeium K4111
CJAP155077 Cellvibrio japonicus0
CHUT269798 ncbi Cytophaga hutchinsonii ATCC 334060
CGLU196627 ncbi Corynebacterium glutamicum ATCC 130320
CFEL264202 ncbi Chlamydophila felis Fe/C-560
CEFF196164 ncbi Corynebacterium efficiens YS-3140
CDIP257309 ncbi Corynebacterium diphtheriae NCTC 131290
CCHL340177 ncbi Chlorobium chlorochromatii CaD30
CCAV227941 ncbi Chlamydophila caviae GPIC0
CBUR434922 ncbi Coxiella burnetii Dugway 5J108-1111
CBUR360115 ncbi Coxiella burnetii RSA 3310
CBUR227377 ncbi Coxiella burnetii RSA 4930
CBOT508765 ncbi Clostridium botulinum B str. Eklund 17B0
CBLO291272 ncbi Candidatus Blochmannia pennsylvanicus BPEN0
CBLO203907 ncbi Candidatus Blochmannia floridanus0
CBEI290402 ncbi Clostridium beijerinckii NCIMB 80520
CAULO ncbi Caulobacter crescentus CB151
CACE272562 ncbi Clostridium acetobutylicum ATCC 8240
CABO218497 ncbi Chlamydophila abortus S26/30
BWEI315730 ncbi Bacillus weihenstephanensis KBAB40
BTUR314724 ncbi Borrelia turicatae 91E1350
BTRI382640 ncbi Bartonella tribocorum CIP 1054761
BTHU412694 ncbi Bacillus thuringiensis Al Hakam0
BTHU281309 ncbi Bacillus thuringiensis serovar konkukian str. 97-270
BTHE226186 ncbi Bacteroides thetaiotaomicron VPI-54820
BSUI470137 ncbi Brucella suis ATCC 234450
BSUI204722 ncbi Brucella suis 13300
BSUB ncbi Bacillus subtilis subtilis 1680
BSP376 Bradyrhizobium sp.1
BSP107806 ncbi Buchnera aphidicola APS (Acyrthosiphon pisum)0
BPUM315750 ncbi Bacillus pumilus SAFR-0320
BPER257313 ncbi Bordetella pertussis Tohama I1
BPAR257311 ncbi Bordetella parapertussis 128221
BOVI236 Brucella ovis0
BMEL359391 ncbi Brucella melitensis biovar Abortus 23080
BMEL224914 ncbi Brucella melitensis bv. 1 str. 16M0
BLON206672 ncbi Bifidobacterium longum NCC27050
BLIC279010 ncbi Bacillus licheniformis ATCC 145800
BHER314723 ncbi Borrelia hermsii DAH0
BHEN283166 ncbi Bartonella henselae Houston-11
BHAL272558 ncbi Bacillus halodurans C-1250
BGAR290434 ncbi Borrelia garinii PBi0
BFRA295405 ncbi Bacteroides fragilis YCH460
BFRA272559 ncbi Bacteroides fragilis NCTC 93430
BCLA66692 ncbi Bacillus clausii KSM-K161
BCIC186490 Candidatus Baumannia cicadellinicola0
BCER572264 ncbi Bacillus cereus 03BB1020
BCER405917 Bacillus cereus W0
BCER315749 ncbi Bacillus cytotoxicus NVH 391-980
BCER288681 ncbi Bacillus cereus E33L0
BCER226900 ncbi Bacillus cereus ATCC 145790
BCAN483179 ncbi Brucella canis ATCC 233650
BBUR224326 ncbi Borrelia burgdorferi B310
BBRO257310 ncbi Bordetella bronchiseptica RB501
BBAC360095 ncbi Bartonella bacilliformis KC5831
BBAC264462 ncbi Bdellovibrio bacteriovorus HD1000
BAPH372461 ncbi Buchnera aphidicola Cc (Cinara cedri)0
BAPH198804 ncbi Buchnera aphidicola Sg (Schizaphis graminum)0
BANT592021 ncbi Bacillus anthracis A02480
BANT568206 ncbi Bacillus anthracis CDC 6840
BANT261594 ncbi Bacillus anthracis Ames Ancestor0
BANT260799 ncbi Bacillus anthracis Sterne0
BAMY326423 ncbi Bacillus amyloliquefaciens FZB420
BAFZ390236 ncbi Borrelia afzelii PKo0
BABO262698 ncbi Brucella abortus bv. 1 str. 9-9410
AYEL322098 ncbi Aster yellows witches-broom phytoplasma AYWB0
AVAR240292 ncbi Anabaena variabilis ATCC 294130
AURANTIMONAS Aurantimonas manganoxydans SI85-9A10
ASP62977 ncbi Acinetobacter sp. ADP10
ASP62928 ncbi Azoarcus sp. BH721
ASP1667 Arthrobacter sp.0
APHA212042 ncbi Anaplasma phagocytophilum HZ0
APER272557 ncbi Aeropyrum pernix K11
ANAE240017 Actinomyces oris MG11
AMAR329726 ncbi Acaryochloris marina MBIC110170
AMAR234826 ncbi Anaplasma marginale St. Maries0
ALAI441768 ncbi Acholeplasma laidlawii PG-8A1
AFUL224325 ncbi Archaeoglobus fulgidus DSM 43040
AFER243159 ncbi Acidithiobacillus ferrooxidans ATCC 232700
ACEL351607 ncbi Acidothermus cellulolyticus 11B0
ABOR393595 ncbi Alcanivorax borkumensis SK21
AAVE397945 ncbi Acidovorax citrulli AAC00-10
AAUR290340 ncbi Arthrobacter aurescens TC10


Names of the homologs of the genes in the group in each of these orgs
  EG11857   EG11856   EG11228   EG10942   EG10941   EG10284   
ZMOB264203 ZMO0516
XORY360094
XORY342109
XORY291331
XFAS405440
XFAS183190
XFAS160492
XCAM487884
XCAM316273
XCAM314565
XCAM190485
XAXO190486
WPIP955
WPIP80849
UURE95667 UU522
UURE95664 UUR10_0611
UPAR505682 UPA3_0559
UMET351160
TWHI218496
TWHI203267 TW120
TVOL273116
TTUR377629
TTHE300852
TTHE262724
TSP28240
TSP1755
TPSE340099
TPET390874
TPAL243276
TMAR243274
TLET416591
TFUS269800 TFU_2648
TERY203124
TELO197221
TCRU317025
TACI273075
STOK273063
STHE322159
STHE299768
STHE264199
SSUI391296
SSUI391295
SSP84588 SYNW2138OR2851
SSP64471 GSYN0403
SSP387093
SSP321332
SSP321327
SSP1148 SLL1099
SSP1131 SYNCC9605_0320
SSOL273057
SSAP342451
SRUB309807 SRU_1766
SPYO370554
SPYO370553
SPYO370552
SPYO370551
SPYO319701
SPYO293653
SPYO286636
SPYO198466
SPYO193567
SPYO186103
SPYO160490
SPNE488221
SPNE487214
SPNE487213
SPNE171101
SPNE170187
SPNE1313
SMUT210007
SMED366394 SMED_5489
SMAR399550
SHAE279808 SH2459
SGOR29390
SGLO343509 SG2283
SEPI176280 SE_0312
SEPI176279 SERP0189
SELO269084
SDEN318161
SDEG203122 SDE_2352
SCO SCO1321
SAUR93062 SACOL0594
SAUR93061 SAOUHSC_00530
SAUR426430 NWMN_0510
SAUR418127 SAHV_0546
SAUR367830 SAUSA300_0533
SAUR359787 SAURJH1_0585
SAUR359786 SAURJH9_0571
SAUR282459 SAS0506
SAUR282458 SAR0553
SAUR273036 SAB0499
SAUR196620 MW0503
SAUR158879 SA0506
SAUR158878 SAV0548
SARE391037
SALA317655
SAGA211110
SAGA208435
SAGA205921
SACI330779
RTYP257363 RT0653
RSPH349102
RSPH349101
RSPH272943
RSP357808 ROSERS_1792
RSP101510 RHA1_RO11226
RSOL267608 RSC2370
RSAL288705
RRUB269796
RRIC452659 RRIOWA_1199
RRIC392021 A1G_05565
RPRO272947 RP661
RPAL316058
RPAL316057 RPD_3204
RPAL316056 RPC_3450
RPAL316055
RPAL258594 RPA3283
RMET266264 RMET_2758
RMAS416276 RMA_1042
RLEG216596 PRL110458
RFEL315456 RF_0276
REUT264198 REUT_A0685
RETL347834 RHE_PE00344
RCON272944 RC1008
RCAS383372 RCAS_2172
RCAN293613 A1E_04380
RBEL391896
RBEL336407
RALB246199
RAKA293614
PTOR263820
PSYR223283 PSPTO_3601
PSYR205918 PSYR_3372
PSP56811
PSP312153 PNUC_1395
PSP296591 BPRO_0940
PSP117
PRUM264731
PPEN278197 PEPE_1143
PNAP365044 PNAP_0837
PMOB403833
PMEN399739
PMAR93060 P9215_17761
PMAR74547 PMT1782
PMAR74546 PMT9312_1600
PMAR59920 PMN2A_1074
PMAR167555 NATL1_19491
PMAR167546 P9301ORF_1732
PMAR167542 P9515ORF_1760
PMAR167540 PMM1508
PMAR167539 PRO_1664
PMAR146891 A9601_17111
PLUT319225
PINT246198
PING357804
PHOR70601
PHAL326442
PGIN242619
PFUR186497
PFLU220664
PFLU216595
PDIS435591
PCRY335284 PCRYO_2184
PATL342610
PAST100379
PARC259536
PABY272844
OTSU357244
OIHE221109
NWIN323098 NWI_1362
NSP387092 NIS_1818
NSP103690
NSEN222891
NPHA348780
NOCE323261
NMUL323848 NMUL_A0765
NMEN374833
NMEN272831
NMEN122587
NMEN122586
NHAM323097 NHAM_3128
NGON242231
NFAR247156 NFA50750
NEUT335283 NEUT_1802
NEUR228410 NE2052
NARO279238 SARO_1247
MVAN350058
MTUB419947
MTUB336982
MTHE349307
MTHE187420
MTBRV
MTBCDC
MSYN262723
MSTA339860
MSP400668
MSP266779 MESO_2451
MSED399549
MPUL272635
MPNE272634
MPEN272633
MMYC272632
MMOB267748
MMAZ192952 MM2264
MMAR444158 MMARC6_1337
MMAR426368 MMARC7_0581
MMAR402880 MMARC5_0257
MMAR394221 MMAR10_1814
MMAR368407
MMAR267377 MMP1336
MLEP272631
MLAB410358
MKAN190192 MK0148
MJAN243232 MJ_0495
MHYO295358
MHYO262722
MHYO262719
MHUN323259
MGIL350054
MGEN243273
MFLO265311
MFLA265072 MFLA_0265
MEXT419610 MEXT_0391
MCAP340047
MBUR259564
MBOV410289
MBOV233413
MBAR269797
MART243272
MAQU351348
MAER449447
MAEO419665 MAEO_0776
MACE188937
MABS561007
LXYL281090
LWEL386043
LSPH444177
LSAK314315
LREU557436
LPNE400673
LPNE297246
LPNE297245
LPNE272624
LPLA220668
LMON265669
LMON169963
LMES203120
LLAC272623
LLAC272622
LJOH257314
LINT267671
LINT189518
LINN272626
LHEL405566 LHV_0895
LGAS324831
LDEL390333 LDB0776
LDEL321956 LBUL_0709
LCHO395495 LCHO_3725
LCAS321967
LBRE387344
LBOR355277
LBOR355276
LBIF456481
LBIF355278
LACI272621
JSP375286 MMA_1967
ILOI283942
IHOS453591
HWAL362976
HSP64091
HSOM205914 HS_0899
HSAL478009
HPYL85963 JHP1406
HPYL357544 HPAG1_1399
HPY HP1513
HMUK485914
HMAR272569
HCHE349521
HACI382638 HAC_0070
GVIO251221
GTHE420246
GOXY290633
GKAU235909
GFOR411154
GBET391165
FTUL458234 FTA_1855
FTUL418136 FTW_0227
FTUL401614 FTN_1576
FTUL393115
FTUL393011 FTH_1691
FTUL351581 FTL_1751
FSUC59374
FRANT
FPHI484022
FNUC190304 FN1555
FNOD381764
FJOH376686
ERUM302409
ERUM254945
ELIT314225 ELI_08205
ECHA205920
ECAN269484
DRAD243230
DNOD246195 DNO_1290
DGEO319795
CVES412965 COSY_0744
CTRA471473
CTRA471472
CTET212717
CTEP194439
CSUL444179
CSP78
CSAL290398 CSAL_1917
CRUT413404 RMAG_0163
CPSY167879
CPRO264201
CPNE182082
CPNE138677
CPNE115713
CPNE115711
CPHY357809
CPEL335992
CNOV386415
CMUR243161
CMIC443906
CMIC31964
CMET456442
CMAQ397948
CKLU431943
CJEI306537 JK1839
CJAP155077
CHUT269798
CGLU196627
CFEL264202
CEFF196164
CDIP257309
CCHL340177
CCAV227941
CBUR434922 COXBU7E912_1856
CBUR360115
CBUR227377
CBOT508765
CBLO291272
CBLO203907
CBEI290402
CAULO CC1240
CACE272562
CABO218497
BWEI315730
BTUR314724
BTRI382640 BT_1520
BTHU412694
BTHU281309
BTHE226186
BSUI470137
BSUI204722
BSUB
BSP376 BRADO3064
BSP107806
BPUM315750
BPER257313 BP1475
BPAR257311 BPP1936
BOVI236
BMEL359391
BMEL224914
BLON206672
BLIC279010
BHER314723
BHEN283166 BH10530
BHAL272558
BGAR290434
BFRA295405
BFRA272559
BCLA66692 ABC1413
BCIC186490
BCER572264
BCER405917
BCER315749
BCER288681
BCER226900
BCAN483179
BBUR224326
BBRO257310 BB2124
BBAC360095 BARBAKC583_0696
BBAC264462
BAPH372461
BAPH198804
BANT592021
BANT568206
BANT261594
BANT260799
BAMY326423
BAFZ390236
BABO262698
AYEL322098
AVAR240292
AURANTIMONAS
ASP62977
ASP62928 AZO3479
ASP1667
APHA212042
APER272557 APE2605
ANAE240017 ANA_0022
AMAR329726
AMAR234826
ALAI441768 ACL_0188
AFUL224325
AFER243159
ACEL351607
ABOR393595 ABO_0383
AAVE397945
AAUR290340


Organism features enriched in list (features available for 385 out of the 412 orgs in the list)
Feature    Pvalue       Num occurrences in list  Total num occurrences  
Arrangment:Pairs 0.004831663112
Disease:Toxic-shock_syndrome_and_staphylococcal_scarlet_fever 0.00991561111
Disease:Wide_range_of_infections 0.00991561111
Disease:gastroenteritis 0.0000165113
Endospores:No 0.0012025155211
GC_Content_Range4:0-40 1.871e-12178213
GC_Content_Range4:40-60 7.667e-6124224
GC_Content_Range4:60-100 0.001799882145
GC_Content_Range7:30-40 3.823e-11142166
GC_Content_Range7:50-60 3.329e-748107
GC_Content_Range7:60-70 0.007900978134
Genome_Size_Range5:0-2 2.201e-9131155
Genome_Size_Range5:2-4 0.0000726150197
Genome_Size_Range5:4-6 2.178e-1284184
Genome_Size_Range5:6-10 0.00033512047
Genome_Size_Range9:0-1 9.876e-62727
Genome_Size_Range9:1-2 0.0000108104128
Genome_Size_Range9:2-3 0.000035897120
Genome_Size_Range9:4-5 5.180e-74296
Genome_Size_Range9:5-6 0.00005864288
Genome_Size_Range9:6-8 0.00281031738
Gram_Stain:Gram_Neg 2.035e-9187333
Gram_Stain:Gram_Pos 0.0000456118150
Habitat:Host-associated 0.0003034154206
Habitat:Multiple 4.326e-694178
Motility:No 3.020e-8126151
Motility:Yes 1.894e-8145267
Optimal_temp.:30-37 0.00049671818
Oxygen_Req:Aerobic 8.981e-7147185
Oxygen_Req:Anaerobic 0.005636757102
Oxygen_Req:Facultative 0.0019302118201
Oxygen_Req:Microaerophilic 0.0032349618
Shape:Coccus 9.516e-97582
Shape:Rod 4.493e-7202347
Shape:Sphere 0.00330751819



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ORGANISMS ENRICHED FOR GROUP:




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ORGANISMS DEPLETED FOR GROUP:




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PHYLOGENETIC PROFILE SIMILARITY WITH KNOWN PATHWAYS:

Pathways or complexes with absolute value of Pearson coefficient with respect to candidate larger than 0.4 are listed below
The candidate is assumed to exist in orgs listed in section List of organisms containing most genes from the group


Pathway or complex  # Orgs containing it  # of those orgs also containing candidate  Pearson Coeff  
PWY0-901 (selenocysteine biosynthesis I (bacteria))2301050.5565
GALACTITOLCAT-PWY (galactitol degradation)73530.5216
AST-PWY (arginine degradation II (AST pathway))120680.4959
PWY0-1241 (ADP-L-glycero-β-D-manno-heptose biosynthesis)218930.4763
LIPA-CORESYN-PWY (Lipid A-core biosynthesis)176820.4718
PWY0-1315 (L-lactaldehyde degradation (anaerobic))45370.4696
PWY-5861 (superpathway of demethylmenaquinone-8 biosynthesis)50390.4646
PWY0-1182 (trehalose degradation II (trehalase))70470.4586
COBALSYN-PWY (adenosylcobalamin salvage from cobinamide I)195840.4456
ECASYN-PWY (enterobacterial common antigen biosynthesis)191830.4455
GLYCOCAT-PWY (glycogen degradation I)246950.4391
PWY0-981 (taurine degradation IV)106570.4255
PWY-46 (putrescine biosynthesis III)138660.4183
GDPRHAMSYN-PWY (GDP-D-rhamnose biosynthesis)156700.4086
PWY0-1335 (NADH to cytochrome bo oxidase electron transfer)112570.4047



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PAIRWISE GENOME CONTEXT SCORE MATRIX:

  EG11856   EG11228   EG10942   EG10941   EG10284   
EG118570.9995350.9998070.9986220.998880.999481
EG118560.9993590.9987380.9988190.999518
EG112280.9985980.9988710.999287
EG109420.9997210.998605
EG109410.998921
EG10284



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PAIRWISE BLAST SCORES:

  EG11857   EG11856   EG11228   EG10942   EG10941   EG10284   
EG118570.0f0-5.9e-124---
EG11856-0.0f0----
EG112281.7e-128-0.0f0---
EG10942---0.0f0--
EG10941----0.0f0-
EG10284-----0.0f0



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PATHWAYS OR PROTEIN COMPLEX MATCHES IN TARGET ORG:

For each case, all genes involved in the pathway or complex are listed. For each gene we list: a tag indicating whether the gene is part of the candidate list or not, the average and the minimum scores of the gene to the candidate list, the gene name, and its product names.

- FORMATEDEHYDROGO-CPLX (formate dehydrogenase-O) (degree of match pw to cand: 0.667, degree of match cand to pw: 0.333, average score: 1.000)
  Genes in pathway or complex:
   *in cand* 0.9993 0.9987 EG11856 (fdoI) FDOI-MONOMER (formate dehydrogenase-O, γ subunit)
   *in cand* 0.9994 0.9986 EG11857 (fdoH) FDOH-MONOMER (formate dehydrogenase-O, β subunit)
                NIL    NIL EG11858 (fdoG) FDOG-MONOMER (formate dehydrogenase-O, α subunit)
  Genes in candidate but not in this pathway or complex:
   *in cand* 0.9993 0.9986 EG10284 (fdhE) EG10284-MONOMER (formate dehydrogenase formation protein)
   *in cand* 0.9992 0.9988 EG10941 (selA) EG10941-MONOMER (selenocysteine synthase monomer)
   *in cand* 0.9990 0.9986 EG10942 (selB) EG10942-MONOMER (selenocysteyl-tRNA-specific translation elongation factor)
   *in cand* 0.9993 0.9986 EG11228 (fdnH) FDNH-MONOMER (formate dehydrogenase N, β subunit)

- PWY0-1355 (formate to trimethylamine N-oxide electron transfer) (degree of match pw to cand: 0.300, degree of match cand to pw: 0.500, average score: 0.730)
  Genes in pathway or complex:
             0.9992 0.9985 EG11229 (fdnI) FDNI-MONOMER (formate dehydrogenase N, γ subunit)
   *in cand* 0.9993 0.9986 EG11228 (fdnH) FDNH-MONOMER (formate dehydrogenase N, β subunit)
                NIL    NIL EG11227 (fdnG) FDNG-MONOMER (formate dehydrogenase N, α subunit)
   *in cand* 0.9993 0.9987 EG11856 (fdoI) FDOI-MONOMER (formate dehydrogenase-O, γ subunit)
   *in cand* 0.9994 0.9986 EG11857 (fdoH) FDOH-MONOMER (formate dehydrogenase-O, β subunit)
                NIL    NIL EG11858 (fdoG) FDOG-MONOMER (formate dehydrogenase-O, α subunit)
             0.4254 0.1666 G7023 (torY) G7023-MONOMER (trimethylamine N-oxide reductase III, c-type cytochrome subunit)
             0.6404 0.4894 G7022 (torZ) G7022-MONOMER (trimethylamine N-oxide reductase III, TorZ subunit)
             0.6479 0.4126 EG11814 (torA) TORA-MONOMER (trimethylamine N-oxide reductase, catalytic subunit)
             0.4787 0.1557 EG11815 (torC) EG11815-MONOMER (TorC trimethylamine N-oxide reductase, cytochrome c-type subunit)
  Genes in candidate but not in this pathway or complex:
   *in cand* 0.9993 0.9986 EG10284 (fdhE) EG10284-MONOMER (formate dehydrogenase formation protein)
   *in cand* 0.9992 0.9988 EG10941 (selA) EG10941-MONOMER (selenocysteine synthase monomer)
   *in cand* 0.9990 0.9986 EG10942 (selB) EG10942-MONOMER (selenocysteyl-tRNA-specific translation elongation factor)

- PWY0-1321 (formate to nitrate electron transfer) (degree of match pw to cand: 0.250, degree of match cand to pw: 0.500, average score: 0.844)
  Genes in pathway or complex:
             0.9992 0.9985 EG11229 (fdnI) FDNI-MONOMER (formate dehydrogenase N, γ subunit)
   *in cand* 0.9993 0.9986 EG11228 (fdnH) FDNH-MONOMER (formate dehydrogenase N, β subunit)
                NIL    NIL EG11227 (fdnG) FDNG-MONOMER (formate dehydrogenase N, α subunit)
   *in cand* 0.9993 0.9987 EG11856 (fdoI) FDOI-MONOMER (formate dehydrogenase-O, γ subunit)
   *in cand* 0.9994 0.9986 EG11857 (fdoH) FDOH-MONOMER (formate dehydrogenase-O, β subunit)
                NIL    NIL EG11858 (fdoG) FDOG-MONOMER (formate dehydrogenase-O, α subunit)
             0.5059 0.3036 EG10638 (narG) NARG-MONOMER (nitrate reductase A, α subunit)
             0.5448 0.2421 EG10639 (narH) NARH-MONOMER (nitrate reductase A, β subunit)
             0.3781 0.1247 EG10640 (narI) NARI-MONOMER (nitrate reductase A, γ subunit)
             0.3573 0.0984 EG10644 (narV) NARV-MONOMER (nitrate reductase Z, γ subunit)
             0.4126 0.2352 EG10648 (narZ) NARZ-MONOMER (nitrate reductase Z, α subunit)
             0.6135 0.1611 EG10647 (narY) NARY-MONOMER (nitrate reductase Z, β subunit)
  Genes in candidate but not in this pathway or complex:
   *in cand* 0.9993 0.9986 EG10284 (fdhE) EG10284-MONOMER (formate dehydrogenase formation protein)
   *in cand* 0.9992 0.9988 EG10941 (selA) EG10941-MONOMER (selenocysteine synthase monomer)
   *in cand* 0.9990 0.9986 EG10942 (selB) EG10942-MONOMER (selenocysteyl-tRNA-specific translation elongation factor)

- PWY0-1356 (formate to dimethyl sulfoxide electron transfer) (degree of match pw to cand: 0.333, degree of match cand to pw: 0.500, average score: 0.903)
  Genes in pathway or complex:
             0.9992 0.9985 EG11229 (fdnI) FDNI-MONOMER (formate dehydrogenase N, γ subunit)
   *in cand* 0.9993 0.9986 EG11228 (fdnH) FDNH-MONOMER (formate dehydrogenase N, β subunit)
                NIL    NIL EG11227 (fdnG) FDNG-MONOMER (formate dehydrogenase N, α subunit)
   *in cand* 0.9993 0.9987 EG11856 (fdoI) FDOI-MONOMER (formate dehydrogenase-O, γ subunit)
   *in cand* 0.9994 0.9986 EG11857 (fdoH) FDOH-MONOMER (formate dehydrogenase-O, β subunit)
                NIL    NIL EG11858 (fdoG) FDOG-MONOMER (formate dehydrogenase-O, α subunit)
             0.6995 0.2491 EG10234 (dmsC) DMSC-MONOMER (dimethyl sulfoxide reductase, chain C)
             0.9947 0.9868 EG10233 (dmsB) DMSB-MONOMER (dimethyl sulfoxide reductase, chain B)
             0.4494 0.1142 EG10232 (dmsA) DMSA-MONOMER (dimethyl sulfoxide reductase, chain A)
  Genes in candidate but not in this pathway or complex:
   *in cand* 0.9993 0.9986 EG10284 (fdhE) EG10284-MONOMER (formate dehydrogenase formation protein)
   *in cand* 0.9992 0.9988 EG10941 (selA) EG10941-MONOMER (selenocysteine synthase monomer)
   *in cand* 0.9990 0.9986 EG10942 (selB) EG10942-MONOMER (selenocysteyl-tRNA-specific translation elongation factor)



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GENOME CONTEXT INFORMATION:

Each row corresponds to a replicon in an organism, each column to a gene in the candidate. The second column indicates whether the organims was included in the list used to compute the genome context scores or not. Some organisms are not included because they are phylogenetically too similar to others already in the list.
The number in the matrix indicate the position of the homolog of the gene in the replicon. All numbers are relative to the smaller one, which is assigned a position of zero. Two columns with the same number indicate that the two genes matched the same gene in that organism.

Genome browser links for gene clusters

The links below opens a genome browser BioCyc page for each cluster of genes in the target genome. These pages shows the central gene of the cluster in the target genome and its best homolog in the reference genomes, for the genomes that contain homologs for at least 75% of the genes in the group. Only one genome per phylogenetic cluster of organisms is shown, to keep the list smaller.

EG10284 EG11856 EG11857 (centered at EG11856)
EG11228 (centered at EG11228)
EG10941 EG10942 (centered at EG10941)


ORG:REPLICON:CIRC?\GENE  IN REF LIST  EG11857   EG11856   EG11228   EG10942   EG10941   EG10284   
166/623167/623164/623265/623170/623113/623
AAEO224324:0:Tyes676109
ABAC204669:0:Tyes416417416420941010
ABAU360910:0:Tyes010432
ABOR393595:0:Tyes---0--
ABUT367737:0:Tyes---10-
ACAU438753:0:Tyes656034
ACRY349163:8:Tyes0-0---
ADEH290397:0:Tyes337933803379703381
AEHR187272:0:Tyes3840384---
AHYD196024:0:Tyes175421710-
ALAI441768:0:Tyes---0--
AMET293826:0:Tyes--0968967-
ANAE240017:0:Tyes---0--
AORE350688:0:Tyes---01-
APER272557:0:Tyes--0---
APLE416269:0:Tyes0106976982
APLE434271:0:Tno0107197202
ASAL382245:5:Tyes1445-144501462-
ASP232721:2:Tyes01004----
ASP62928:0:Tyes-0----
ASP76114:2:Tyes76076---
BAMB339670:2:Tno010432
BAMB398577:2:Tno010432
BBAC360095:0:Tyes---0--
BBRO257310:0:Tyes-0----
BCEN331271:1:Tno3230-1
BCEN331272:2:Tyes010432
BCLA66692:0:Tyes----0-
BHEN283166:0:Tyes---0--
BJAP224911:0:Fyes-74-0--
BMAL243160:0:Tno434012
BMAL320388:0:Tno010432
BMAL320389:0:Tyes010432
BPAR257311:0:Tno-0----
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