CANDIDATE ID: 460

CANDIDATE ID: 460

NUMBER OF GENES: 6
AVERAGE SCORE:    9.9949480e-1 (range=[0.0,1.0])
AVERAGE MINIMUM BLAST P-VAL:    8.3333370e-1

Gene List
List of organisms containing most genes from the group
    Phylogenetic tree highlighting these organisms (opens new page)
List of organisms containing very few or no genes from the group
List of organisms enriched for group
List of organisms depleted for group
Phylogenetic profile similarity with known pathways
Pairwise genome context scores
Pairwise Blast scores
Pathway or protein complex matches in target organism
Genome context matrix
    Genes and their orthologs in genome browser BioCyc pages



GENE LIST:

- G7016 (exoX) (b1844)
   Products of gene:
     - G7016-MONOMER (exonuclease X)

- G6100 (yafS) (b0213)
   Products of gene:
     - G6100-MONOMER (predicted S-adenosyl-L-methionine-dependent methyltransferase)

- G6099 (gloB) (b0212)
   Products of gene:
     - GLYOXII-MONOMER (glyoxalase II)
       Reactions:
        S-lactoyl-glutathione + H2O  ->  glutathione + (R)-lactate + H+
         In pathways
         METHGLYUT-PWY (superpathway of methylglyoxal degradation)
         PWY-5386 (methylglyoxal degradation I)

- EG10860 (rnhA) (b0214)
   Products of gene:
     - EG10860-MONOMER (RNase HI, degrades RNA of DNA-RNA hybrids, participates in DNA replication)
       Reactions:
        EC# 3.1.26.4

- EG10246 (mltD) (b0211)
   Products of gene:
     - EG10246-MONOMER (MltD membrane-bound lytic murein transglycosylase D)
       Reactions:
        a peptidoglycan polymer  =  a peptidoglycan polymer with 1,6-anhydromuropeptide end + a peptidoglycan polymer with GlcNAc end

- EG10243 (dnaQ) (b0215)
   Products of gene:
     - EG10243-MONOMER (DNA polymerase III, ε subunit)
       Reactions:
        EC# 3.1.11.-
     - CPLX0-2361 (DNA polymerase III, core enzyme)
     - CPLX0-3803 (DNA polymerase III, holoenzyme)



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ORGANISMS CONTAINING AT LEAST 5 GENES FROM THE GROUP:

Total number of orgs: 155
Effective number of orgs (counting one per cluster within 468 clusters): 102

Organism list
Homologs in each organism in the list
Features enriched in organism list


Follow (ncbi) link, when present, to find the set of organism features for each organism
Org ID  Org Name  # genes in group found in org  
YPSE349747 ncbi Yersinia pseudotuberculosis IP 317586
YPSE273123 ncbi Yersinia pseudotuberculosis IP 329536
YPES386656 ncbi Yersinia pestis Pestoides F6
YPES377628 ncbi Yersinia pestis Nepal5166
YPES360102 ncbi Yersinia pestis Antiqua6
YPES349746 ncbi Yersinia pestis Angola6
YPES214092 ncbi Yersinia pestis CO926
YPES187410 ncbi Yersinia pestis KIM 106
YENT393305 ncbi Yersinia enterocolitica enterocolitica 80816
VVUL216895 ncbi Vibrio vulnificus CMCP66
VVUL196600 ncbi Vibrio vulnificus YJ0166
VPAR223926 ncbi Vibrio parahaemolyticus RIMD 22106336
VFIS312309 ncbi Vibrio fischeri ES1146
VEIS391735 ncbi Verminephrobacter eiseniae EF01-26
VCHO345073 ncbi Vibrio cholerae O3956
VCHO ncbi Vibrio cholerae O1 biovar El Tor str. N169616
TTUR377629 ncbi Teredinibacter turnerae T79016
TDEN292415 ncbi Thiobacillus denitrificans ATCC 252596
TCRU317025 ncbi Thiomicrospira crunogena XCL-25
STYP99287 ncbi Salmonella enterica enterica serovar Typhimurium str. LT26
SSP94122 ncbi Shewanella sp. ANA-36
SSON300269 ncbi Shigella sonnei Ss0466
SSED425104 ncbi Shewanella sediminis HAW-EB36
SPRO399741 ncbi Serratia proteamaculans 5686
SPEA398579 ncbi Shewanella pealeana ATCC 7003456
SONE211586 ncbi Shewanella oneidensis MR-16
SLOI323850 ncbi Shewanella loihica PV-46
SHIGELLA ncbi Shigella flexneri 2a str. 2457T6
SHAL458817 ncbi Shewanella halifaxensis HAW-EB46
SGLO343509 ncbi Sodalis glossinidius morsitans6
SFLE373384 ncbi Shigella flexneri 5 str. 84016
SFLE198214 ncbi Shigella flexneri 2a str. 3016
SENT454169 ncbi Salmonella enterica enterica serovar Heidelberg str. SL4766
SENT321314 ncbi Salmonella enterica enterica serovar Choleraesuis str. SC-B676
SENT295319 ncbi Salmonella enterica enterica serovar Paratyphi A str. ATCC 91506
SENT220341 ncbi Salmonella enterica enterica serovar Typhi str. CT186
SENT209261 ncbi Salmonella enterica enterica serovar Typhi str. Ty26
SDYS300267 ncbi Shigella dysenteriae Sd1976
SDEN318161 ncbi Shewanella denitrificans OS2176
SDEG203122 ncbi Saccharophagus degradans 2-406
SBOY300268 ncbi Shigella boydii Sb2276
SBAL402882 ncbi Shewanella baltica OS1856
SBAL399599 ncbi Shewanella baltica OS1956
RSOL267608 ncbi Ralstonia solanacearum GMI10006
RMET266264 ncbi Ralstonia metallidurans CH346
RFER338969 ncbi Rhodoferax ferrireducens T1186
REUT381666 ncbi Ralstonia eutropha H166
REUT264198 ncbi Ralstonia eutropha JMP1345
PSYR223283 ncbi Pseudomonas syringae pv. tomato str. DC30005
PSYR205918 ncbi Pseudomonas syringae pv. syringae B728a5
PSTU379731 ncbi Pseudomonas stutzeri A15015
PSP312153 ncbi Polynucleobacter necessarius asymbioticus QLW-P1DMWA-16
PSP296591 ncbi Polaromonas sp. JS6666
PPUT76869 ncbi Pseudomonas putida GB-16
PPUT351746 ncbi Pseudomonas putida F16
PPUT160488 ncbi Pseudomonas putida KT24406
PPRO298386 ncbi Photobacterium profundum SS96
PNAP365044 ncbi Polaromonas naphthalenivorans CJ25
PMUL272843 ncbi Pasteurella multocida multocida Pm705
PMEN399739 ncbi Pseudomonas mendocina ymp6
PLUM243265 ncbi Photorhabdus luminescens laumondii TTO15
PING357804 ncbi Psychromonas ingrahamii 376
PHAL326442 ncbi Pseudoalteromonas haloplanktis TAC1256
PFLU220664 ncbi Pseudomonas fluorescens Pf-55
PFLU216595 ncbi Pseudomonas fluorescens SBW255
PFLU205922 ncbi Pseudomonas fluorescens Pf0-15
PENT384676 ncbi Pseudomonas entomophila L485
PCRY335284 ncbi Psychrobacter cryohalolentis K55
PCAR338963 ncbi Pelobacter carbinolicus DSM 23805
PATL342610 ncbi Pseudoalteromonas atlantica T6c6
PAER208964 ncbi Pseudomonas aeruginosa PAO15
PAER208963 ncbi Pseudomonas aeruginosa UCBPP-PA145
NOCE323261 ncbi Nitrosococcus oceani ATCC 197075
NMUL323848 ncbi Nitrosospira multiformis ATCC 251965
NEUT335283 ncbi Nitrosomonas eutropha C915
NEUR228410 ncbi Nitrosomonas europaea ATCC 197185
MSUC221988 ncbi Mannheimia succiniciproducens MBEL55E5
MSP400668 ncbi Marinomonas sp. MWYL16
MPET420662 ncbi Methylibium petroleiphilum PM15
MFLA265072 ncbi Methylobacillus flagellatus KT6
MCAP243233 ncbi Methylococcus capsulatus Bath5
MAQU351348 ncbi Marinobacter aquaeolei VT86
LPNE400673 ncbi Legionella pneumophila Corby5
LPNE297246 ncbi Legionella pneumophila Paris5
LPNE297245 ncbi Legionella pneumophila Lens5
LPNE272624 ncbi Legionella pneumophila pneumophila Philadelphia 15
LCHO395495 ncbi Leptothrix cholodnii SP-66
KPNE272620 ncbi Klebsiella pneumoniae pneumoniae MGH 785786
JSP375286 ncbi Janthinobacterium sp. Marseille6
ILOI283942 ncbi Idiomarina loihiensis L2TR6
HSOM228400 ncbi Haemophilus somnus 23365
HSOM205914 ncbi Haemophilus somnus 129PT5
HHAL349124 ncbi Halorhodospira halophila SL15
HCHE349521 ncbi Hahella chejuensis KCTC 23966
HARS204773 ncbi Herminiimonas arsenicoxydans6
ESP42895 Enterobacter sp.6
EFER585054 ncbi Escherichia fergusonii ATCC 354696
ECOO157 ncbi Escherichia coli O157:H7 EDL9336
ECOL83334 Escherichia coli O157:H76
ECOL585397 ncbi Escherichia coli ED1a6
ECOL585057 ncbi Escherichia coli IAI396
ECOL585056 ncbi Escherichia coli UMN0266
ECOL585055 ncbi Escherichia coli 559896
ECOL585035 ncbi Escherichia coli S886
ECOL585034 ncbi Escherichia coli IAI16
ECOL481805 ncbi Escherichia coli ATCC 87396
ECOL469008 ncbi Escherichia coli BL21(DE3)6
ECOL439855 ncbi Escherichia coli SMS-3-56
ECOL413997 ncbi Escherichia coli B str. REL6066
ECOL409438 ncbi Escherichia coli SE116
ECOL405955 ncbi Escherichia coli APEC O16
ECOL364106 ncbi Escherichia coli UTI896
ECOL362663 ncbi Escherichia coli 5366
ECOL331111 ncbi Escherichia coli E24377A6
ECOL316407 ncbi Escherichia coli K-12 substr. W31106
ECOL199310 ncbi Escherichia coli CFT0736
ECAR218491 ncbi Pectobacterium atrosepticum SCRI10436
DARO159087 ncbi Dechloromonas aromatica RCB6
CVIO243365 ncbi Chromobacterium violaceum ATCC 124725
CSAL290398 ncbi Chromohalobacter salexigens DSM 30436
CPSY167879 ncbi Colwellia psychrerythraea 34H5
CJAP155077 Cellvibrio japonicus5
CBUR434922 ncbi Coxiella burnetii Dugway 5J108-1116
CBUR360115 ncbi Coxiella burnetii RSA 3316
CBUR227377 ncbi Coxiella burnetii RSA 4936
CBOT515621 ncbi Clostridium botulinum Ba4 str. 6575
BVIE269482 ncbi Burkholderia vietnamiensis G46
BTHA271848 ncbi Burkholderia thailandensis E2646
BSP36773 Burkholderia sp.6
BPSE320373 ncbi Burkholderia pseudomallei 6685
BPSE320372 ncbi Burkholderia pseudomallei 1710b5
BPSE272560 ncbi Burkholderia pseudomallei K962435
BPET94624 Bordetella petrii5
BPER257313 ncbi Bordetella pertussis Tohama I6
BPAR257311 ncbi Bordetella parapertussis 128226
BMAL320389 ncbi Burkholderia mallei NCTC 102475
BMAL320388 ncbi Burkholderia mallei SAVP15
BMAL243160 ncbi Burkholderia mallei ATCC 233445
BCEN331272 ncbi Burkholderia cenocepacia HI24245
BCEN331271 ncbi Burkholderia cenocepacia AU 10545
BBRO257310 ncbi Bordetella bronchiseptica RB506
BAMB398577 ncbi Burkholderia ambifaria MC40-66
BAMB339670 ncbi Burkholderia ambifaria AMMD6
ASP76114 ncbi Aromatoleum aromaticum EbN16
ASP62977 ncbi Acinetobacter sp. ADP15
ASP62928 ncbi Azoarcus sp. BH726
ASP232721 ncbi Acidovorax sp. JS426
ASP1667 Arthrobacter sp.5
ASAL382245 ncbi Aeromonas salmonicida salmonicida A4496
AHYD196024 Aeromonas hydrophila dhakensis6
AFER243159 ncbi Acidithiobacillus ferrooxidans ATCC 232705
AEHR187272 ncbi Alkalilimnicola ehrlichii MLHE-16
ABOR393595 ncbi Alcanivorax borkumensis SK26
ABAU360910 ncbi Bordetella avium 197N6
AAVE397945 ncbi Acidovorax citrulli AAC00-16


Names of the homologs of the genes in the group in each of these orgs
  G7016   G6100   G6099   EG10860   EG10246   EG10243   
YPSE349747 YPSIP31758_1055YPSIP31758_1053YPSIP31758_1052YPSIP31758_1054YPSIP31758_1051YPSIP31758_1055
YPSE273123 YPTB2964YPTB2966YPTB2967YPTB2965YPTB2968YPTB2964
YPES386656 YPDSF_1630YPDSF_1632YPDSF_1633YPDSF_1631YPDSF_1634YPDSF_1630
YPES377628 YPN_2916YPN_2918YPN_2919YPN_2917YPN_2920YPN_2916
YPES360102 YPA_0560YPA_0558YPA_0557YPA_0559YPA_0556YPA_0560
YPES349746 YPANGOLA_A2682YPANGOLA_A2684YPANGOLA_A2685YPANGOLA_A2683YPANGOLA_A2686YPANGOLA_A2682
YPES214092 YPO1082YPO1080YPO1079YPO1081YPO1078YPO1082
YPES187410 Y3094Y3096Y3097Y3095Y3098Y3094
YENT393305 YE1790YE0920YE0919YE0921YE0918YE0922
VVUL216895 VV2_1003VV1_1884VV1_1883VV1_1886VV1_1882VV1_1887
VVUL196600 VVA1495VV2531VV2532VV2530VV2533VV2529
VPAR223926 VPA0793VP2294VP2295VP2293VP2296VP2292
VFIS312309 VF1935VF1937VF1938VF1936VF1939VF1935
VEIS391735 VEIS_3657VEIS_0592VEIS_0591VEIS_0593VEIS_0590VEIS_2379
VCHO345073 VC0395_A1825VC0395_A1827VC0395_A1828VC0395_A1826VC0395_A1829VC0395_A1825
VCHO VC2233VC2235VC2236VC2234VC2237VC2233
TTUR377629 TERTU_2112TERTU_2110TERTU_2109TERTU_2111TERTU_2108TERTU_2112
TDEN292415 TBD_1662TBD_1664TBD_1665TBD_1663TBD_1666TBD_1662
TCRU317025 TCR_0927TCR_0926TCR_0928TCR_0925TCR_0930
STYP99287 STM1878STM0262STM0261STM0263STM0260STM0264
SSP94122 SHEWANA3_2251SHEWANA3_2368SHEWANA3_2369SHEWANA3_2366SHEWANA3_2370SHEWANA3_2365
SSON300269 SSO_1304SSO_0227SSO_0226SSO_0228SSO_0225SSO_0229
SSED425104 SSED_2410SSED_1990SSED_1989SSED_1992SSED_1988SSED_1993
SPRO399741 SPRO_1938SPRO_0910SPRO_0909SPRO_0911SPRO_0908SPRO_0912
SPEA398579 SPEA_1999SPEA_2405SPEA_2406SPEA_2403SPEA_2407SPEA_2402
SONE211586 SO_2559SO_2562SO_2563SO_2560SO_2564SO_2559
SLOI323850 SHEW_2111SHEW_2113SHEW_2114SHEW_2112SHEW_2115SHEW_2111
SHIGELLA S1920YAFSGLOBRNHADNIRDNAQ
SHAL458817 SHAL_2302SHAL_1872SHAL_1871SHAL_1874SHAL_1870SHAL_1875
SGLO343509 SG0592SG0590SG0589SG0591SG0588SG0592
SFLE373384 SFV_1846SFV_0197SFV_0196SFV_0199SFV_0195SFV_0198
SFLE198214 AAN43413.1AAN41861.1AAN41860.1AAN41862.1AAN41859.1AAN41863.1
SENT454169 SEHA_C2092SEHA_C0300SEHA_C0299SEHA_C0301SEHA_C0298SEHA_C0302
SENT321314 SCH_1883SCH_0258SCH_0257SCH_0259SCH_0256SCH_0260
SENT295319 SPA0991SPA2507SPA2508SPA2506SPA2509SPA2505
SENT220341 STY2084STY0283STY0282STY0284STY0281STY0285
SENT209261 T0999T2603T2604T2602T2605T2601
SDYS300267 SDY_1130SDY_0232SDY_0231SDY_0233SDY_0230SDY_0234
SDEN318161 SDEN_2018SDEN_2020SDEN_2021SDEN_2019SDEN_2022SDEN_2018
SDEG203122 SDE_3411SDE_2022SDE_2023SDE_0066SDE_2024SDE_2021
SBOY300268 SBO_1148SBO_0202SBO_0201SBO_0203SBO_0200SBO_0204
SBAL402882 SHEW185_2015SHEW185_2012SHEW185_2011SHEW185_2014SHEW185_2010SHEW185_2015
SBAL399599 SBAL195_2063SBAL195_2060SBAL195_2059SBAL195_2062SBAL195_2058SBAL195_2063
RSOL267608 RSC1872RSC1514RSC1515RSC1513RSC1516RSC1872
RMET266264 RMET_2209RMET_2207RMET_2206RMET_2208RMET_2205RMET_2209
RFER338969 RFER_3777RFER_1463RFER_1462RFER_1464RFER_1461RFER_2183
REUT381666 H16_A2467H16_A2465H16_A2464H16_A2466H16_A2463H16_A2467
REUT264198 REUT_A2190REUT_A2187REUT_A2189REUT_A2186REUT_A2190
PSYR223283 PSPTO_3713PSPTO_3714PSPTO_3712PSPTO_3715PSPTO_3711
PSYR205918 PSYR_1762PSYR_1761PSYR_1763PSYR_1760PSYR_1764
PSTU379731 PST_2253PST_2254PST_2252PST_2255PST_2251
PSP312153 PNUC_0699PNUC_1023PNUC_1022PNUC_1024PNUC_1021PNUC_1027
PSP296591 BPRO_4151BPRO_2280BPRO_2055BPRO_2281BPRO_2278BPRO_2184
PPUT76869 PPUTGB1_3713PPUTGB1_3715PPUTGB1_3716PPUTGB1_3714PPUTGB1_3717PPUTGB1_3713
PPUT351746 PPUT_1724PPUT_1722PPUT_1721PPUT_1723PPUT_1720PPUT_1724
PPUT160488 PP_4141PP_4143PP_4144PP_4142PP_4145PP_4141
PPRO298386 PBPRA2917PBPRA2919PBPRA2920PBPRA2918PBPRA2921PBPRA2917
PNAP365044 PNAP_1679PNAP_1678PNAP_1680PNAP_1677PNAP_2284
PMUL272843 PM0106PM0686PM0685PM0107PM0106
PMEN399739 PMEN_2067PMEN_2065PMEN_2064PMEN_2066PMEN_2063PMEN_2067
PLUM243265 PLU0941PLU0940PLU0942PLU0939PLU0943
PING357804 PING_0495PING_0497PING_0498PING_0496PING_0499PING_0495
PHAL326442 PSHAA1996PSHAA1965PSHAA1966PSHAA1964PSHAA1967PSHAA1963
PFLU220664 PFL_3298PFL_3299PFL_3297PFL_3300PFL_3294
PFLU216595 PFLU2644PFLU2643PFLU2645PFLU2642PFLU2646
PFLU205922 PFL_2185PFL_2184PFL_2186PFL_2183PFL_2187
PENT384676 PSEEN3560PSEEN3561PSEEN3559PSEEN3562PSEEN3558
PCRY335284 PCRYO_2213PCRYO_1432PCRYO_0855PCRYO_1112PCRYO_0855
PCAR338963 PCAR_2613PCAR_3076PCAR_0204PCAR_2042PCAR_2613
PATL342610 PATL_2364PATL_1896PATL_1895PATL_2365PATL_1894PATL_2364
PAER208964 PA1814PA1813PA1815PA1812PA1816
PAER208963 PA14_41070PA14_41080PA14_41060PA14_41090PA14_41050
NOCE323261 NOC_2816NOC_1750NOC_2815NOC_2988NOC_2814
NMUL323848 NMUL_A1620NMUL_A1621NMUL_A1619NMUL_A0517NMUL_A1618
NEUT335283 NEUT_2177NEUT_2178NEUT_2176NEUT_2469NEUT_2175
NEUR228410 NE0139NE0138NE0140NE2421NE0141
MSUC221988 MS1570MS0945MS0946MS1571MS1570
MSP400668 MMWYL1_1705MMWYL1_1703MMWYL1_1702MMWYL1_1704MMWYL1_1701MMWYL1_1705
MPET420662 MPE_A2528MPE_A2529MPE_A2527MPE_A2530MPE_A2256
MFLA265072 MFLA_1478MFLA_1480MFLA_1481MFLA_1479MFLA_1482MFLA_1478
MCAP243233 MCA_2029MCA_0343MCA_0719MCA_2028MCA_0720
MAQU351348 MAQU_1533MAQU_1535MAQU_1536MAQU_1534MAQU_1537MAQU_1533
LPNE400673 LPC_0800LPC_0719LPC_0799LPC_0718LPC_0800
LPNE297246 LPP1339LPP1258LPP1338LPP1257LPP1339
LPNE297245 LPL1335LPL1257LPL1334LPL1256LPL1335
LPNE272624 LPG1384LPG1295LPG1383LPG1294LPG1384
LCHO395495 LCHO_0238LCHO_1971LCHO_1972LCHO_1970LCHO_1973LCHO_1041
KPNE272620 GKPORF_B1517GKPORF_B4519GKPORF_B4517GKPORF_B4518GKPORF_B4516GKPORF_B4520
JSP375286 MMA_1212MMA_1209MMA_1210MMA_1211MMA_1208MMA_1212
ILOI283942 IL1693IL1696IL1697IL1694IL1698IL1693
HSOM228400 HSM_0954HSM_1277HSM_1278HSM_0955HSM_0954
HSOM205914 HS_0603HS_0808HS_0809HS_0604HS_0603
HHAL349124 HHAL_1902HHAL_1587HHAL_1585HHAL_1588HHAL_0262
HCHE349521 HCH_00401HCH_02526HCH_02525HCH_02527HCH_02524HCH_02528
HARS204773 HEAR2318HEAR2320HEAR2321HEAR2319HEAR2322HEAR2318
ESP42895 ENT638_2415ENT638_0747ENT638_0746ENT638_0748ENT638_0745ENT638_0749
EFER585054 EFER_1229EFER_0242EFER_0241EFER_0243EFER_0240EFER_0244
ECOO157 Z2894YAFSGLOBRNHADNIRDNAQ
ECOL83334 ECS2554ECS0209ECS0208ECS0210ECS0207ECS0211
ECOL585397 ECED1_2049ECED1_0218ECED1_0217ECED1_0219ECED1_0216ECED1_0220
ECOL585057 ECIAI39_1206ECIAI39_0436ECIAI39_0437ECIAI39_0435ECIAI39_0438ECIAI39_0434
ECOL585056 ECUMN_2139ECUMN_0210ECUMN_0209ECUMN_0211ECUMN_0208ECUMN_0212
ECOL585055 EC55989_2022EC55989_0212EC55989_0211EC55989_0213EC55989_0210EC55989_0214
ECOL585035 ECS88_1898ECS88_0228ECS88_0227ECS88_0229ECS88_0226ECS88_0230
ECOL585034 ECIAI1_1916ECIAI1_0221ECIAI1_0220ECIAI1_0222ECIAI1_0219ECIAI1_0223
ECOL481805 ECOLC_1788ECOLC_3452ECOLC_3453ECOLC_3451ECOLC_3454ECOLC_3450
ECOL469008 ECBD_1796ECBD_3411ECBD_3412ECBD_3410ECBD_3413ECBD_3409
ECOL439855 ECSMS35_1342ECSMS35_0228ECSMS35_0226ECSMS35_0227ECSMS35_0225ECSMS35_0229
ECOL413997 ECB_01815ECB_00206ECB_00205ECB_00207ECB_00204ECB_00208
ECOL409438 ECSE_2019ECSE_0209ECSE_0208ECSE_0210ECSE_0207ECSE_0211
ECOL405955 APECO1_895APECO1_1777APECO1_1778APECO1_1776APECO1_1779APECO1_1775
ECOL364106 UTI89_C2046UTI89_C0232UTI89_C0231UTI89_C0233UTI89_C0230UTI89_C0234
ECOL362663 ECP_1788ECP_0219ECP_0218ECP_0220ECP_0217ECP_0221
ECOL331111 ECE24377A_2074ECE24377A_0220ECE24377A_0217ECE24377A_0219ECE24377A_0216ECE24377A_0221
ECOL316407 ECK1845:JW1833:B1844ECK0213:JW0203:B0213ECK0212:JW0202:B0212ECK0214:JW0204:B0214ECK0211:JW5018:B0211ECK0215:JW0205:B0215
ECOL199310 C2254C0250C0249C0251C0248C0252
ECAR218491 ECA3339ECA3341ECA3342ECA3340ECA3343ECA3339
DARO159087 DARO_1592DARO_1594DARO_1595DARO_1593DARO_1320DARO_1592
CVIO243365 CV_1255CV_1254CV_1256CV_1253CV_1257
CSAL290398 CSAL_1941CSAL_1943CSAL_1944CSAL_1942CSAL_1945CSAL_1941
CPSY167879 CPS_0780CPS_2000CPS_1999CPS_1998CPS_2255
CJAP155077 CJA_2050CJA_2052CJA_2049CJA_2053CJA_2048
CBUR434922 COXBU7E912_1761COXBU7E912_1764COXBU7E912_1765COXBU7E912_1763COXBU7E912_1767COXBU7E912_1761
CBUR360115 COXBURSA331_A0426COXBURSA331_A0423COXBURSA331_A0422COXBURSA331_A0424COXBURSA331_A0420COXBURSA331_A0426
CBUR227377 CBU_0317CBU_0315CBU_0314CBU_0316CBU_0313CBU_0317
CBOT515621 CLJ_B2648CLJ_B3322CLJ_B0460CLJ_B3271CLJ_B2648
BVIE269482 BCEP1808_3849BCEP1808_1239BCEP1808_1240BCEP1808_1238BCEP1808_1241BCEP1808_1237
BTHA271848 BTH_I1595BTH_I2789BTH_I2788BTH_I2790BTH_I2787BTH_I2791
BSP36773 BCEP18194_A5296BCEP18194_A4428BCEP18194_A4429BCEP18194_A4427BCEP18194_A4430BCEP18194_A4426
BPSE320373 BURPS668_1467BURPS668_1468BURPS668_1466BURPS668_1469BURPS668_1465
BPSE320372 BURPS1710B_A1694BURPS1710B_A1695BURPS1710B_A1693BURPS1710B_A1697BURPS1710B_A1692
BPSE272560 BPSL1343BPSL1344BPSL1342BPSL1345BPSL1341
BPET94624 BPET0634BPET0630BPET0631BPET0629BPET0634
BPER257313 BP0406BP3212BP3213BP3211BP3214BP0406
BPAR257311 BPP3831BPP3835BPP3836BPP3834BPP3837BPP3831
BMAL320389 BMA10247_0557BMA10247_0558BMA10247_0556BMA10247_0559BMA10247_0555
BMAL320388 BMASAVP1_A1274BMASAVP1_A1275BMASAVP1_A1273BMASAVP1_A1276BMASAVP1_A1272
BMAL243160 BMA_0764BMA_0765BMA_0763BMA_0766BMA_0762
BCEN331272 BCEN2424_1286BCEN2424_1287BCEN2424_1285BCEN2424_1288BCEN2424_1284
BCEN331271 BCEN_0805BCEN_0806BCEN_0804BCEN_0807BCEN_0803
BBRO257310 BB4275BB4279BB4280BB4278BB4281BB4275
BAMB398577 BAMMC406_5458BAMMC406_1175BAMMC406_1176BAMMC406_1174BAMMC406_1177BAMMC406_1173
BAMB339670 BAMB_4910BAMB_1163BAMB_1164BAMB_1162BAMB_1165BAMB_1161
ASP76114 EBA166EBA6459EBA6461EBA6458EBA6465EBA6456
ASP62977 ACIAD2257ACIAD2452ACIAD1137ACIAD1138ACIAD1137
ASP62928 AZO2410AZO2056AZO2057AZO2055AZO2060AZO2054
ASP232721 AJS_2138AJS_1744AJS_1743AJS_1745AJS_1742AJS_2138
ASP1667 ARTH_2578ARTH_3722ARTH_0781ARTH_1555ARTH_3970
ASAL382245 ASA_2787ASA_2789ASA_2790ASA_2788ASA_2791ASA_2787
AHYD196024 AHA_1570AHA_1569AHA_1567AHA_1568AHA_1566AHA_1570
AFER243159 AFE_1319AFE_2640AFE_2638AFE_2616AFE_2637
AEHR187272 MLG_2053MLG_1993MLG_1994MLG_1992MLG_1995MLG_1991
ABOR393595 ABO_1225ABO_1223ABO_1222ABO_1224ABO_1221ABO_1225
ABAU360910 BAV2931BAV2935BAV2936BAV2934BAV2937BAV2931
AAVE397945 AAVE_0016AAVE_2652AAVE_2651AAVE_2653AAVE_2650AAVE_2449


Organism features enriched in list (features available for 148 out of the 155 orgs in the list)
Feature    Pvalue       Num occurrences in list  Total num occurrences  
Arrangment:Chains 0.00035851192
Arrangment:Pairs 0.004103039112
Disease:Bubonic_plague 0.000247966
Disease:Dysentery 0.000247966
Disease:Gastroenteritis 0.00011001013
Disease:Legionnaire's_disease 0.004028144
Endospores:No 2.257e-631211
Endospores:Yes 1.566e-6153
GC_Content_Range4:0-40 1.957e-229213
GC_Content_Range4:40-60 1.845e-1293224
GC_Content_Range7:0-30 9.609e-6147
GC_Content_Range7:30-40 1.766e-158166
GC_Content_Range7:40-50 0.002910641117
GC_Content_Range7:50-60 4.359e-952107
GC_Content_Range7:60-70 0.002556046134
Genome_Size_Range5:2-4 0.000088532197
Genome_Size_Range5:4-6 2.431e-2093184
Genome_Size_Range5:6-10 0.00016772347
Genome_Size_Range9:2-3 0.000185416120
Genome_Size_Range9:4-5 2.475e-84796
Genome_Size_Range9:5-6 2.292e-94688
Genome_Size_Range9:6-8 8.205e-62238
Gram_Stain:Gram_Neg 3.208e-25135333
Habitat:Host-associated 0.009649842206
Habitat:Multiple 0.000855460178
Habitat:Specialized 0.0050743653
Motility:No 2.639e-913151
Motility:Yes 1.489e-13106267
Optimal_temp.:- 0.003910778257
Oxygen_Req:Anaerobic 4.195e-95102
Oxygen_Req:Facultative 2.082e-1083201
Pathogenic_in:Animal 0.00142682766
Pathogenic_in:No 0.000425641226
Shape:Coccus 2.650e-8382
Shape:Rod 3.141e-13124347
Shape:Spiral 0.0025352234
Temp._range:Mesophilic 0.0024352131473
Temp._range:Psychrophilic 0.001251779
Temp._range:Thermophilic 0.0003175135



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ORGANISMS CONTAINING AT MOST 1 GENES FROM THE GROUP:

Total number of orgs: 160
Effective number of orgs (counting one per cluster within 468 clusters): 130

Organism list
Homologs in each organism in the list
Features enriched in organism list


Follow (ncbi) link, when present, to find the set of organism features for each organism
Org ID  Org Name  # genes in group found in org  
UURE95667 Ureaplasma urealyticum serovar 130
UURE95664 Ureaplasma urealyticum serovar 100
UPAR505682 ncbi Ureaplasma parvum serovar 3 str. ATCC 278150
UMET351160 ncbi uncultured methanogenic archaeon RC-I0
TWHI218496 ncbi Tropheryma whipplei TW08/271
TWHI203267 ncbi Tropheryma whipplei Twist1
TVOL273116 ncbi Thermoplasma volcanium GSS10
TPEN368408 ncbi Thermofilum pendens Hrk 50
TKOD69014 ncbi Thermococcus kodakarensis KOD10
TFUS269800 ncbi Thermobifida fusca YX1
TACI273075 ncbi Thermoplasma acidophilum DSM 17280
STRO369723 ncbi Salinispora tropica CNB-4400
STOK273063 ncbi Sulfolobus tokodaii 71
STHE322159 ncbi Streptococcus thermophilus LMD-90
STHE299768 ncbi Streptococcus thermophilus CNRZ10660
STHE264199 ncbi Streptococcus thermophilus LMG 183110
SSUI391296 ncbi Streptococcus suis 98HAH330
SSUI391295 ncbi Streptococcus suis 05ZYH330
SSOL273057 ncbi Sulfolobus solfataricus P21
SPYO370554 ncbi Streptococcus pyogenes MGAS107500
SPYO370553 ncbi Streptococcus pyogenes MGAS20960
SPYO370552 ncbi Streptococcus pyogenes MGAS102700
SPYO370551 ncbi Streptococcus pyogenes MGAS94290
SPYO319701 ncbi Streptococcus pyogenes MGAS61800
SPYO293653 ncbi Streptococcus pyogenes MGAS50050
SPYO286636 ncbi Streptococcus pyogenes MGAS103940
SPYO198466 ncbi Streptococcus pyogenes MGAS3150
SPYO193567 ncbi Streptococcus pyogenes SSI-10
SPYO186103 ncbi Streptococcus pyogenes MGAS82320
SPYO160490 ncbi Streptococcus pyogenes M1 GAS0
SPNE488221 ncbi Streptococcus pneumoniae 705850
SPNE487214 ncbi Streptococcus pneumoniae Hungary19A-60
SPNE487213 ncbi Streptococcus pneumoniae Taiwan19F-140
SPNE171101 ncbi Streptococcus pneumoniae R60
SPNE170187 ncbi Streptococcus pneumoniae G540
SPNE1313 Streptococcus pneumoniae0
SMUT210007 ncbi Streptococcus mutans UA1590
SMAR399550 ncbi Staphylothermus marinus F10
SGOR29390 Streptococcus gordonii Challis0
SAVE227882 ncbi Streptomyces avermitilis MA-46801
SARE391037 ncbi Salinispora arenicola CNS-2050
SAGA211110 ncbi Streptococcus agalactiae NEM3160
SAGA208435 ncbi Streptococcus agalactiae 2603V/R0
SAGA205921 ncbi Streptococcus agalactiae A9090
SACI330779 ncbi Sulfolobus acidocaldarius DSM 6390
RSP357808 ncbi Roseiflexus sp. RS-11
RCAS383372 ncbi Roseiflexus castenholzii DSM 139411
RBEL391896 ncbi Rickettsia bellii OSU 85-3891
RALB246199 Ruminococcus albus 81
PTOR263820 ncbi Picrophilus torridus DSM 97900
PTHE370438 ncbi Pelotomaculum thermopropionicum SI1
PRUM264731 ncbi Prevotella ruminicola 231
PPEN278197 ncbi Pediococcus pentosaceus ATCC 257451
PMOB403833 ncbi Petrotoga mobilis SJ951
PISL384616 ncbi Pyrobaculum islandicum DSM 41840
PHOR70601 ncbi Pyrococcus horikoshii OT30
PGIN242619 ncbi Porphyromonas gingivalis W831
PFUR186497 ncbi Pyrococcus furiosus DSM 36380
PAST100379 Onion yellows phytoplasma0
PARS340102 ncbi Pyrobaculum arsenaticum DSM 135140
PAER178306 ncbi Pyrobaculum aerophilum IM20
PABY272844 ncbi Pyrococcus abyssi GE50
NPHA348780 ncbi Natronomonas pharaonis DSM 21601
MTHE349307 ncbi Methanosaeta thermophila PT0
MTHE187420 ncbi Methanothermobacter thermautotrophicus Delta H0
MSYN262723 ncbi Mycoplasma synoviae 530
MSTA339860 ncbi Methanosphaera stadtmanae DSM 30910
MSED399549 ncbi Metallosphaera sedula DSM 53480
MPUL272635 ncbi Mycoplasma pulmonis UAB CTIP0
MPNE272634 ncbi Mycoplasma pneumoniae M1290
MPEN272633 ncbi Mycoplasma penetrans HF-20
MMYC272632 ncbi Mycoplasma mycoides mycoides SC str. PG10
MMOB267748 ncbi Mycoplasma mobile 163K0
MMAZ192952 ncbi Methanosarcina mazei Go10
MMAR444158 ncbi Methanococcus maripaludis C60
MMAR426368 ncbi Methanococcus maripaludis C70
MMAR402880 ncbi Methanococcus maripaludis C50
MMAR368407 ncbi Methanoculleus marisnigri JR10
MMAR267377 ncbi Methanococcus maripaludis S20
MLEP272631 ncbi Mycobacterium leprae TN1
MLAB410358 ncbi Methanocorpusculum labreanum Z0
MKAN190192 ncbi Methanopyrus kandleri AV190
MJAN243232 ncbi Methanocaldococcus jannaschii DSM 26610
MHYO295358 ncbi Mycoplasma hyopneumoniae 2320
MHYO262722 ncbi Mycoplasma hyopneumoniae 74480
MHYO262719 ncbi Mycoplasma hyopneumoniae J0
MHUN323259 ncbi Methanospirillum hungatei JF-10
MGEN243273 ncbi Mycoplasma genitalium G370
MFLO265311 ncbi Mesoplasma florum L10
MCAP340047 ncbi Mycoplasma capricolum capricolum ATCC 273430
MBUR259564 ncbi Methanococcoides burtonii DSM 62420
MBAR269797 ncbi Methanosarcina barkeri Fusaro0
MART243272 ncbi Mycoplasma arthritidis 158L3-10
MAER449447 ncbi Microcystis aeruginosa NIES-8431
MAEO419665 ncbi Methanococcus aeolicus Nankai-30
MACE188937 ncbi Methanosarcina acetivorans C2A0
LXYL281090 ncbi Leifsonia xyli xyli CTCB071
LMES203120 ncbi Leuconostoc mesenteroides mesenteroides ATCC 82931
LJOH257314 ncbi Lactobacillus johnsonii NCC 5331
LINT267671 ncbi Leptospira interrogans serovar Copenhageni str. Fiocruz L1-1300
LINT189518 ncbi Leptospira interrogans serovar Lai str. 566011
LHEL405566 ncbi Lactobacillus helveticus DPC 45711
LGAS324831 ncbi Lactobacillus gasseri ATCC 333231
LDEL390333 ncbi Lactobacillus delbrueckii bulgaricus ATCC 118421
LDEL321956 ncbi Lactobacillus delbrueckii bulgaricus ATCC BAA-3651
LBRE387344 ncbi Lactobacillus brevis ATCC 3671
LBOR355277 ncbi Leptospira borgpetersenii serovar Hardjo-bovis JB1971
LBOR355276 ncbi Leptospira borgpetersenii serovar Hardjo-bovis L5501
LBIF456481 ncbi Leptospira biflexa serovar Patoc strain Patoc 1 (Paris)1
LBIF355278 ncbi Leptospira biflexa serovar Patoc strain Patoc 1 (Ames)1
LACI272621 ncbi Lactobacillus acidophilus NCFM1
IHOS453591 ncbi Ignicoccus hospitalis KIN4/I0
HWAL362976 ncbi Haloquadratum walsbyi DSM 167900
HSP64091 ncbi Halobacterium sp. NRC-10
HSAL478009 ncbi Halobacterium salinarum R10
HMUK485914 ncbi Halomicrobium mukohataei DSM 122860
HMAR272569 ncbi Haloarcula marismortui ATCC 430491
HBUT415426 ncbi Hyperthermus butylicus DSM 54560
FNOD381764 ncbi Fervidobacterium nodosum Rt17-B10
ECHA205920 ncbi Ehrlichia chaffeensis Arkansas1
DSP255470 ncbi Dehalococcoides sp. CBDB11
DSP216389 ncbi Dehalococcoides sp. BAV11
DETH243164 ncbi Dehalococcoides ethenogenes 1951
CTRA471473 ncbi Chlamydia trachomatis L2b/UCH-1/proctitis1
CTRA471472 ncbi Chlamydia trachomatis 434/Bu1
CSUL444179 ncbi Candidatus Sulcia muelleri GWSS0
CPRO264201 ncbi Candidatus Protochlamydia amoebophila UWE251
CPNE182082 ncbi Chlamydophila pneumoniae TW-1831
CPNE138677 ncbi Chlamydophila pneumoniae J1381
CPNE115713 ncbi Chlamydophila pneumoniae CWL0291
CPNE115711 ncbi Chlamydophila pneumoniae AR391
CNOV386415 ncbi Clostridium novyi NT1
CMUR243161 ncbi Chlamydia muridarum Nigg1
CMET456442 ncbi Candidatus Methanoregula boonei 6A80
CMAQ397948 ncbi Caldivirga maquilingensis IC-1670
CKOR374847 ncbi Candidatus Korarchaeum cryptofilum OPF81
CJEI306537 ncbi Corynebacterium jeikeium K4111
CGLU196627 ncbi Corynebacterium glutamicum ATCC 130321
CFEL264202 ncbi Chlamydophila felis Fe/C-561
CEFF196164 ncbi Corynebacterium efficiens YS-3140
CDIP257309 ncbi Corynebacterium diphtheriae NCTC 131290
CCAV227941 ncbi Chlamydophila caviae GPIC1
CABO218497 ncbi Chlamydophila abortus S26/31
BXEN266265 ncbi Burkholderia xenovorans LB4000
BTUR314724 ncbi Borrelia turicatae 91E1351
BTHE226186 ncbi Bacteroides thetaiotaomicron VPI-54821
BLON206672 ncbi Bifidobacterium longum NCC27051
BHER314723 ncbi Borrelia hermsii DAH0
BGAR290434 ncbi Borrelia garinii PBi0
BBUR224326 ncbi Borrelia burgdorferi B310
BAPH372461 ncbi Buchnera aphidicola Cc (Cinara cedri)1
BAFZ390236 ncbi Borrelia afzelii PKo0
AYEL322098 ncbi Aster yellows witches-broom phytoplasma AYWB0
AURANTIMONAS Aurantimonas manganoxydans SI85-9A10
APER272557 ncbi Aeropyrum pernix K10
ANAE240017 Actinomyces oris MG11
ALAI441768 ncbi Acholeplasma laidlawii PG-8A1
AFUL224325 ncbi Archaeoglobus fulgidus DSM 43040
ACEL351607 ncbi Acidothermus cellulolyticus 11B1
ABAC204669 ncbi Candidatus Koribacter versatilis Ellin3451


Names of the homologs of the genes in the group in each of these orgs
  G7016   G6100   G6099   EG10860   EG10246   EG10243   
UURE95667
UURE95664
UPAR505682
UMET351160
TWHI218496 TW0505
TWHI203267 TW239
TVOL273116
TPEN368408
TKOD69014
TFUS269800 TFU_0902
TACI273075
STRO369723
STOK273063 ST2022
STHE322159
STHE299768
STHE264199
SSUI391296
SSUI391295
SSOL273057 SSO3132
SPYO370554
SPYO370553
SPYO370552
SPYO370551
SPYO319701
SPYO293653
SPYO286636
SPYO198466
SPYO193567
SPYO186103
SPYO160490
SPNE488221
SPNE487214
SPNE487213
SPNE171101
SPNE170187
SPNE1313
SMUT210007
SMAR399550
SGOR29390
SAVE227882 SAV1138
SARE391037
SAGA211110
SAGA208435
SAGA205921
SACI330779
RSP357808 ROSERS_1014
RCAS383372 RCAS_1189
RBEL391896 A1I_05965
RALB246199 GRAORF_3525
PTOR263820
PTHE370438 PTH_1980
PRUM264731 GFRORF0014
PPEN278197 PEPE_0304
PMOB403833 PMOB_1483
PISL384616
PHOR70601
PGIN242619 PG_0139
PFUR186497
PAST100379
PARS340102
PAER178306
PABY272844
NPHA348780 NP4032A
MTHE349307
MTHE187420
MSYN262723
MSTA339860
MSED399549
MPUL272635
MPNE272634
MPEN272633
MMYC272632
MMOB267748
MMAZ192952
MMAR444158
MMAR426368
MMAR402880
MMAR368407
MMAR267377
MLEP272631 ML1912
MLAB410358
MKAN190192
MJAN243232
MHYO295358
MHYO262722
MHYO262719
MHUN323259
MGEN243273
MFLO265311
MCAP340047
MBUR259564
MBAR269797
MART243272
MAER449447 MAE_49310
MAEO419665
MACE188937
LXYL281090 LXX15090
LMES203120 LEUM_1529
LJOH257314 LJ_0098
LINT267671
LINT189518 LA2116
LHEL405566 LHV_0132
LGAS324831 LGAS_0096
LDEL390333 LDB0176
LDEL321956 LBUL_0152
LBRE387344 LVIS_1930
LBOR355277 LBJ_1894
LBOR355276 LBL_1390
LBIF456481 LEPBI_I1900
LBIF355278 LBF_1845
LACI272621 LBA0121
IHOS453591
HWAL362976
HSP64091
HSAL478009
HMUK485914
HMAR272569 RRNAC1117
HBUT415426
FNOD381764
ECHA205920 ECH_0263
DSP255470 CBDBA762
DSP216389 DEHABAV1_0711
DETH243164 DET_0785
CTRA471473 CTLON_0793
CTRA471472 CTL0798
CSUL444179
CPRO264201 PC0236
CPNE182082 CPB0681
CPNE138677 CPJ0655
CPNE115713 CPN0655
CPNE115711 CP_0092
CNOV386415 NT01CX_1846
CMUR243161 TC_0823
CMET456442
CMAQ397948
CKOR374847 KCR_0511
CJEI306537 JK0693
CGLU196627 CG0388
CFEL264202 CF0921
CEFF196164
CDIP257309
CCAV227941 CCA_00085
CABO218497 CAB085
BXEN266265
BTUR314724 BT0625
BTHE226186 BT_3999
BLON206672 BL1624
BHER314723
BGAR290434
BBUR224326
BAPH372461 BCC_156
BAFZ390236
AYEL322098
AURANTIMONAS
APER272557
ANAE240017 ANA_0099
ALAI441768 ACL_0960
AFUL224325
ACEL351607 ACEL_0968
ABAC204669 ACID345_0549


Organism features enriched in list (features available for 152 out of the 160 orgs in the list)
Feature    Pvalue       Num occurrences in list  Total num occurrences  
Arrangment:Chains 0.00406573492
Arrangment:Pairs 0.002248318112
Disease:Leptospirosis 0.004486444
Disease:Pharyngitis 0.000018688
Disease:Wide_range_of_infections 2.872e-71111
Disease:bronchitis_and_pneumonitis 0.000018688
Endospores:No 2.007e-21104211
Endospores:Yes 0.0096070753
GC_Content_Range4:0-40 2.583e-679213
GC_Content_Range4:60-100 9.649e-619145
GC_Content_Range7:0-30 0.00074672247
GC_Content_Range7:30-40 0.001507257166
GC_Content_Range7:50-60 0.000496315107
GC_Content_Range7:60-70 0.000037618134
Genome_Size_Range5:0-2 1.009e-2187155
Genome_Size_Range5:4-6 2.428e-1512184
Genome_Size_Range5:6-10 0.0003296347
Genome_Size_Range9:0-1 1.110e-82127
Genome_Size_Range9:1-2 9.258e-1366128
Genome_Size_Range9:4-5 1.120e-8596
Genome_Size_Range9:5-6 3.508e-6788
Genome_Size_Range9:6-8 0.0000969138
Gram_Stain:Gram_Neg 4.616e-1743333
Gram_Stain:Gram_Pos 0.009095549150
Habitat:Multiple 0.000232530178
Habitat:Specialized 0.00028142553
Motility:No 1.634e-866151
Motility:Yes 0.000015548267
Optimal_temp.:- 0.000102248257
Optimal_temp.:30-35 0.001525067
Optimal_temp.:85 0.004486444
Oxygen_Req:Aerobic 0.000143731185
Oxygen_Req:Anaerobic 0.000016644102
Pathogenic_in:Swine 0.001146855
Salinity:Non-halophilic 0.001229240106
Shape:Coccus 3.234e-63982
Shape:Irregular_coccus 5.940e-111717
Shape:Rod 1.342e-1746347
Shape:Sphere 1.052e-71619
Temp._range:Hyperthermophilic 1.159e-61723
Temp._range:Mesophilic 0.0001524108473
Temp._range:Thermophilic 0.00017261935



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ORGANISMS ENRICHED FOR GROUP:




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ORGANISMS DEPLETED FOR GROUP:




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PHYLOGENETIC PROFILE SIMILARITY WITH KNOWN PATHWAYS:

Pathways or complexes with absolute value of Pearson coefficient with respect to candidate larger than 0.4 are listed below
The candidate is assumed to exist in orgs listed in section List of organisms containing most genes from the group


Pathway or complex  # Orgs containing it  # of those orgs also containing candidate  Pearson Coeff  
PWY0-1241 (ADP-L-glycero-β-D-manno-heptose biosynthesis)2181440.6988
AST-PWY (arginine degradation II (AST pathway))1201010.6698
COBALSYN-PWY (adenosylcobalamin salvage from cobinamide I)1951220.5884
LIPA-CORESYN-PWY (Lipid A-core biosynthesis)1761150.5873
GLYCOCAT-PWY (glycogen degradation I)2461370.5757
PWY-5918 (heme biosynthesis I)2721440.5714
PWY-5755 (4-hydroxybenzoate biosynthesis II (bacteria and fungi))81710.5613
ECASYN-PWY (enterobacterial common antigen biosynthesis)1911170.5595
PWY-5111 (CMP-KDO biosynthesis II (from D-arabinose 5-phosphate))3001490.5526
HEME-BIOSYNTHESIS-II (heme biosynthesis from uroporphyrinogen-III I)2861440.5427
KDO-LIPASYN-PWY (KDO2-lipid A biosynthesis I)2251230.5181
GALACTITOLCAT-PWY (galactitol degradation)73630.5176
PWY-1269 (CMP-KDO biosynthesis I)3251500.5139
PWY-5913 (TCA cycle variation IV)3011440.5135
PWY-4041 (γ-glutamyl cycle)2791380.5121
GLUCARDEG-PWY (D-glucarate degradation I)152970.5116
PWY-5857 (ubiquinone-10 biosynthesis (prokaryotic))1831080.5092
GLUTATHIONESYN-PWY (glutathione biosynthesis)3391510.4969
3-HYDROXYPHENYLACETATE-DEGRADATION-PWY (4-hydroxyphenylacetate degradation)149940.4955
PWY-5386 (methylglyoxal degradation I)3051420.4911
PHOSLIPSYN-PWY (phospholipid biosynthesis I)2901380.4901
PWY4FS-7 (phosphatidylglycerol biosynthesis I (plastidic))2911380.4882
PWY-5855 (ubiquinone-7 biosynthesis (prokaryotic))1911080.4870
PWY0-1319 (CDP-diacylglycerol biosynthesis II)2961390.4859
NAGLIPASYN-PWY (lipid IVA biosynthesis)3481500.4742
TYRFUMCAT-PWY (tyrosine degradation I)1841040.4739
LIPASYN-PWY (phospholipases)2121130.4722
PWY-5148 (acyl-CoA hydrolysis)2271170.4669
GLUCONSUPER-PWY (D-gluconate degradation)2291170.4622
PWY-6196 (serine racemization)102710.4578
GLUCARGALACTSUPER-PWY (superpathway of D-glucarate and D-galactarate degradation)135840.4543
ENTNER-DOUDOROFF-PWY (Entner-Doudoroff pathway I)2491210.4476
GLYCOLYSIS-E-D (superpathway of glycolysis and Entner-Doudoroff)2491210.4476
PWY-5856 (ubiquinone-9 biosynthesis (prokaryotic))2551220.4422
PWY0-541 (cyclopropane fatty acid (CFA) biosynthesis)3001340.4411
PWY0-981 (taurine degradation IV)106710.4410
4AMINOBUTMETAB-PWY (superpathway of 4-aminobutyrate degradation)2121090.4408
P344-PWY (acrylonitrile degradation)2101080.4379
GALACTARDEG-PWY (D-galactarate degradation I)151880.4370
DAPLYSINESYN-PWY (lysine biosynthesis I)3421420.4247
PWY-561 (superpathway of glyoxylate cycle)162890.4122
GLYCOLATEMET-PWY (glycolate and glyoxylate degradation I)2701220.4108
PWY0-845 (superpathway of pyridoxal 5'-phosphate biosynthesis and salvage)3291370.4102
UBISYN-PWY (ubiquinol-8 biosynthesis (prokaryotic))3981520.4095
GLYOXYLATE-BYPASS (glyoxylate cycle)169910.4088
PWY-46 (putrescine biosynthesis III)138800.4083
PWY0-1335 (NADH to cytochrome bo oxidase electron transfer)112700.4074
PWY-6193 (3-chlorocatechol degradation II (ortho))194990.4068
PWY0-901 (selenocysteine biosynthesis I (bacteria))2301100.4061
LPSSYN-PWY (superpathway of lipopolysaccharide biosynthesis)91610.4033
PWY-3162 (tryptophan degradation V (side chain pathway))94620.4005
CHOLINE-BETAINE-ANA-PWY (choline degradation I)135780.4002



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PAIRWISE GENOME CONTEXT SCORE MATRIX:

  G6100   G6099   EG10860   EG10246   EG10243   
G70160.9989880.9987770.9991770.9985390.999786
G61000.9998120.9997930.9997440.999685
G60990.9996840.999790.999644
EG108600.9996340.999776
EG102460.999593
EG10243



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PAIRWISE BLAST SCORES:

  G7016   G6100   G6099   EG10860   EG10246   EG10243   
G70160.0f0----2.2e-6
G6100-0.0f0----
G6099--0.0f0---
EG10860---0.0f0--
EG10246----0.0f0-
EG10243-----0.0f0



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PATHWAYS OR PROTEIN COMPLEX MATCHES IN TARGET ORG:

For each case, all genes involved in the pathway or complex are listed. For each gene we list: a tag indicating whether the gene is part of the candidate list or not, the average and the minimum scores of the gene to the candidate list, the gene name, and its product names.



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GENOME CONTEXT INFORMATION:

Each row corresponds to a replicon in an organism, each column to a gene in the candidate. The second column indicates whether the organims was included in the list used to compute the genome context scores or not. Some organisms are not included because they are phylogenetically too similar to others already in the list.
The number in the matrix indicate the position of the homolog of the gene in the replicon. All numbers are relative to the smaller one, which is assigned a position of zero. Two columns with the same number indicate that the two genes matched the same gene in that organism.

Genome browser links for gene clusters

The links below opens a genome browser BioCyc page for each cluster of genes in the target genome. These pages shows the central gene of the cluster in the target genome and its best homolog in the reference genomes, for the genomes that contain homologs for at least 75% of the genes in the group. Only one genome per phylogenetic cluster of organisms is shown, to keep the list smaller.

EG10243 EG10246 EG10860 G6099 G6100 (centered at G6100)
G7016 (centered at G7016)


ORG:REPLICON:CIRC?\GENE  IN REF LIST  G7016   G6100   G6099   EG10860   EG10246   EG10243   
309/623143/623352/623394/623290/623348/623
AAEO224324:0:Tyes0-850-347-
AAUR290340:2:Tyes--12880679-
AAVE397945:0:Tyes025912590259225892391
ABAC204669:0:Tyes----0-
ABAU360910:0:Tyes045360
ABOR393595:0:Tyes421304
ABUT367737:0:Tyes283--5130-
ACAU438753:0:Tyes--2211477-0
ACEL351607:0:Tyes0-----
ACRY349163:8:Tyes1125-1270-1125
ADEH290397:0:Tyes--0921823-
AEHR187272:0:Tyes6223140
AFER243159:0:Tyes0-1304130212801301
AHYD196024:0:Tyes421304
ALAI441768:0:Tyes--0---
AMAR234826:0:Tyes365--0-365
AMAR329726:9:Tyes0-33562253--
AMET293826:0:Tyes321-0---
ANAE240017:0:Tyes---0--
AORE350688:0:Tyes0----0
APHA212042:0:Tyes---0-587
APLE416269:0:Tyes--08-871
APLE434271:0:Tno--07-847
ASAL382245:5:Tyes023140
ASP1667:3:Tyes1811-296007833215
ASP232721:2:Tyes3812130381
ASP62928:0:Tyes36323160
ASP62977:0:Tyes1051-1227010
ASP76114:2:Tyes036653666366436673663
AVAR240292:3:Tyes--01192--
BABO262698:1:Tno--13650-1493
BAMB339670:2:Tno0-----
BAMB339670:3:Tno-23140
BAMB398577:2:Tno0-----
BAMB398577:3:Tno-23140
BAMY326423:0:Tyes0-48-275413
BANT260799:0:Tno60---060
BANT261594:2:Tno57---057
BANT568206:2:Tyes0---610
BANT592021:2:Tno60---060
BAPH198804:0:Tyes2-01-2
BAPH372461:0:Tyes-----0
BBAC264462:0:Tyes2510-100518670-
BBAC360095:0:Tyes--925385-0
BBRO257310:0:Tyes045360
BCAN483179:1:Tno--14480-1582
BCEN331271:2:Tno-23140
BCEN331272:3:Tyes-23140
BCER226900:1:Tyes0----0
BCER288681:0:Tno62---062
BCER315749:1:Tyes574---0574
BCER405917:1:Tyes0----0
BCER572264:1:Tno56---056
BCIC186490:0:Tyes--21-0
BCLA66692:0:Tyes170-438--0
BFRA272559:1:Tyes2107---0-
BFRA295405:0:Tno2245---0-
BHAL272558:0:Tyes0----0
BHEN283166:0:Tyes--1530411-0
BJAP224911:0:Fyes--01105-423
BLIC279010:0:Tyes0-752-3220
BLON206672:0:Tyes---0--
BMAL243160:1:Tno-23140
BMAL320388:1:Tno-23140
BMAL320389:1:Tyes-23140
BMEL224914:1:Tno--01366-1970
BMEL359391:1:Tno--13170-1442
BOVI236:1:Tyes--12340-1346
BPAR257311:0:Tno045360
BPER257313:0:Tyes025332534253225350
BPET94624:0:Tyes5-1205
BPSE272560:1:Tyes-23140
BPSE320372:1:Tno-23150
BPSE320373:1:Tno-23140
BPUM315750:0:Tyes0-642-2830
BQUI283165:0:Tyes--1180318-0
BSP107806:2:Tyes1-0--1
BSP36773:2:Tyes88223140
BSP376:0:Tyes0-3356049-0
BSUB:0:Tyes0-48-274607
BSUI204722:1:Tyes--14080-1540
BSUI470137:1:Tno--12320-1365
BTHA271848:1:Tno011671166116811651169
BTHE226186:0:Tyes----0-
BTHU281309:1:Tno56---056
BTHU412694:1:Tno57---057
BTRI382640:1:Tyes--2123581-0
BTUR314724:0:Fyes----0-
BVIE269482:6:Tyes0-----
BVIE269482:7:Tyes-23140
BWEI315730:4:Tyes0----0
CABO218497:0:Tyes0-----
CACE272562:1:Tyes0-1521-1945-
CAULO:0:Tyes0-5173406-0
CBEI290402:0:Tyes--34221120-
CBLO203907:0:Tyes2-01-2
CBLO291272:0:Tno2-01-2
CBOT36826:1:Tno1991-262702580-
CBOT441770:0:Tyes1826-260702559-
CBOT441771:0:Tno1796-246602420-
CBOT441772:1:Tno1953--02522-
CBOT498213:1:Tno1909--02588-
CBOT508765:1:Tyes979-0-1596-
CBOT515621:2:Tyes2146-2806027562146
CBOT536232:0:Tno2168-288602834-
CBUR227377:1:Tyes421304
CBUR360115:1:Tno532405
CBUR434922:2:Tno023150
CCAV227941:1:Tyes0-----
CCHL340177:0:Tyes---3660-
CCON360104:2:Tyes---01019-
CCUR360105:0:Tyes---13990-
CDES477974:0:Tyes0-3171254830-
CDIF272563:1:Tyes0-1456--1106
CFEL264202:1:Tyes0-----
CFET360106:0:Tyes---5320-
CGLU196627:0:Tyes--0---
CHOM360107:1:Tyes---12740-
CHUT269798:0:Tyes1630--263901630
CHYD246194:0:Tyes--1509-01330
CJAP155077:0:Tyes-24150
CJEI306537:0:Tyes-----0
CJEJ192222:0:Tyes---9600-
CJEJ195099:0:Tno---10190-
CJEJ354242:2:Tyes---9250-
CJEJ360109:0:Tyes---6020-
CJEJ407148:0:Tno---9570-
CKLU431943:0:Tyes0-----
CKLU431943:1:Tyes--0---
CKOR374847:0:Tyes--0---
CMIC31964:2:Tyes---01184-
CMIC443906:2:Tyes---01029-
CMUR243161:1:Tyes0-----
CNOV386415:0:Tyes--0---
CPEL335992:0:Tyes--900-213
CPER195102:1:Tyes0-250-307-
CPER195103:0:Tno0-237-293-
CPER289380:3:Tyes0-234-291-
CPHY357809:0:Tyes---0-237
CPNE115711:1:Tyes0-----
CPNE115713:0:Tno0-----
CPNE138677:0:Tno0-----
CPNE182082:0:Tno0-----
CPRO264201:0:Fyes0-----
CPSY167879:0:Tyes012011200-11991452
CRUT413404:0:Tyes--04239968
CSAL290398:0:Tyes023140
CSP501479:7:Fyes--193--0
CSP501479:8:Fyes1311--0--
CSP78:2:Tyes--04050-4669
CTEP194439:0:Tyes--10486210-
CTET212717:0:Tyes0-990---
CTRA471472:0:Tyes0-----
CTRA471473:0:Tno0-----
CVES412965:0:Tyes--042-62
CVIO243365:0:Tyes-21304
DARO159087:0:Tyes2782802812790278
DDES207559:0:Tyes---0656-
DETH243164:0:Tyes--0---
DGEO319795:1:Tyes124--2740124
DHAF138119:0:Tyes1872-0---
DNOD246195:0:Tyes0-84188-0
DOLE96561:0:Tyes--02736681-
DPSY177439:2:Tyes---0789-
DRAD243230:3:Tyes0--42-0
DRED349161:0:Tyes0--7121063216
DSHI398580:5:Tyes3308-25470-3308
DSP216389:0:Tyes--0---
DSP255470:0:Tno--0---
DVUL882:1:Tyes---6450-
ECAN269484:0:Tyes0--257-0
ECAR218491:0:Tyes023140
ECHA205920:0:Tyes---0--
ECOL199310:0:Tno195321304
ECOL316407:0:Tno164821304
ECOL331111:6:Tno178321405
ECOL362663:0:Tno156021304
ECOL364106:1:Tno181521304
ECOL405955:2:Tyes153321304
ECOL409438:6:Tyes183621304
ECOL413997:0:Tno160321304
ECOL439855:4:Tno107721304
ECOL469008:0:Tno015891590158815911587
ECOL481805:0:Tno016591660165816611657
ECOL585034:0:Tno168321304
ECOL585035:0:Tno161721304
ECOL585055:0:Tno180121304
ECOL585056:2:Tno193221304
ECOL585057:0:Tno79523140
ECOL585397:0:Tno175821304
ECOL83334:0:Tno239121304
ECOLI:0:Tno167421304
ECOO157:0:Tno243121304
EFAE226185:3:Tyes1831---0-
EFER585054:1:Tyes98021304
ELIT314225:0:Tyes--12130-2320
ERUM254945:0:Tyes0--247-0
ERUM302409:0:Tno0--248-0
ESP42895:1:Tyes167721304
FALN326424:0:Tyes3087-01843--
FJOH376686:0:Tyes4037--16101532
FMAG334413:1:Tyes0-77--0
FNUC190304:0:Tyes0----0
FPHI484022:1:Tyes--0216-328
FRANT:0:Tno--80638-0
FSP106370:0:Tyes1853-0---
FSP1855:0:Tyes0-450---
FSUC59374:0:Tyes2194---0-
FTUL351581:0:Tno--0165-297
FTUL393011:0:Tno--0155-266
FTUL393115:0:Tyes--79238-0
FTUL401614:0:Tyes--399119-0
FTUL418136:0:Tno--0571-447
FTUL458234:0:Tno--0166-285
GBET391165:0:Tyes1689-01424-1689
GFOR411154:0:Tyes343--147513880
GKAU235909:1:Tyes0----0
GMET269799:1:Tyes2122--016242122
GOXY290633:5:Tyes1770-1000-1770
GSUL243231:0:Tyes371--10550-
GTHE420246:1:Tyes0----0
GURA351605:0:Tyes--24901142-
GVIO251221:0:Tyes--0277--
HACI382638:1:Tyes---0773-
HARS204773:0:Tyes023140
HAUR316274:2:Tyes--27183732-0
HCHE349521:0:Tyes020372036203820352039
HDUC233412:0:Tyes0-863871-0
HHAL349124:0:Tyes1653-1330132813310
HHEP235279:0:Tyes---0641-
HINF281310:0:Tyes0-14951-0
HINF374930:0:Tyes1-2010-1
HINF71421:0:Tno0-11101-0
HMAR272569:8:Tyes--0---
HMOD498761:0:Tyes--14572443-0
HNEP81032:0:Tyes0-3348933-0
HPY:0:Tno---0920-
HPYL357544:1:Tyes---0899-
HPYL85963:0:Tno---0866-
HSOM205914:1:Tyes02032041-0
HSOM228400:0:Tno03183191-0
ILOI283942:0:Tyes034150
JSP290400:1:Tyes0-855312-0
JSP375286:0:Tyes421304
KPNE272620:2:Tyes029182917291929162920
KRAD266940:1:Fyes0-----
KRAD266940:2:Fyes----0-
LACI272621:0:Tyes---0--
LBIF355278:2:Tyes--0---
LBIF456481:2:Tno--0---
LBOR355276:1:Tyes--0---
LBOR355277:1:Tno--0---
LBRE387344:2:Tyes---0--
LCAS321967:1:Tyes0--1600--
LCHO395495:0:Tyes01758175917571760813
LDEL321956:0:Tyes---0--
LDEL390333:0:Tyes---0--
LGAS324831:0:Tyes---0--
LHEL405566:0:Tyes---0--
LINN272626:1:Tno0---1534-
LINT189518:1:Tyes--0---
LINT363253:3:Tyes---6980-
LJOH257314:0:Tyes---0--
LLAC272622:5:Tyes----0494
LLAC272623:0:Tyes----0441
LMES203120:1:Tyes0-----
LMON169963:0:Tno0---1429-
LMON265669:0:Tyes0---1323-
LPLA220668:0:Tyes0--474--
LPNE272624:0:Tno90-189090
LPNE297245:1:Fno79-178079
LPNE297246:1:Fyes83-182083
LPNE400673:0:Tno81-180081
LREU557436:0:Tyes---510-
LSAK314315:0:Tyes0---98-
LSPH444177:1:Tyes446---0-
LWEL386043:0:Tyes0---1304-
LXYL281090:0:Tyes---0--
MABS561007:1:Tyes0-2788--0
MAER449447:0:Tyes--0---
MAQU351348:2:Tyes023140
MAVI243243:0:Tyes0-2207---
MBOV233413:0:Tno1582-0---
MBOV410289:0:Tno1540-0---
MCAP243233:0:Tyes-158803551587356
MEXT419610:0:Tyes567-15930-567
MFLA265072:0:Tyes023140
MGIL350054:3:Tyes1136-9410-1136
MLEP272631:0:Tyes--0---
MLOT266835:2:Tyes--03191-730
MMAG342108:0:Tyes781-34300-3783
MMAR394221:0:Tyes750-1640-750
MPET420662:1:Tyes-2722732712740
MSME246196:0:Tyes2902-04188-4894
MSP164756:1:Tno0-941073-1631
MSP164757:0:Tno0-941434-1978
MSP189918:2:Tyes0-941099-1658
MSP266779:3:Tyes--23450-2751
MSP400668:0:Tyes421304
MSP409:2:Tyes620-9664056-0
MSUC221988:0:Tyes64101642-641
MTBCDC:0:Tno1667-0---
MTBRV:0:Tno1574-0---
MTHE264732:0:Tyes519--0--
MTUB336982:0:Tno1562-0---
MTUB419947:0:Tyes1622-0---
MVAN350058:0:Tyes--01143-1758
MXAN246197:0:Tyes--22003310-
NARO279238:0:Tyes--122098221260
NEUR228410:0:Tyes-10223193
NEUT335283:2:Tyes-2312820
NFAR247156:2:Tyes0--3938--
NGON242231:0:Tyes--5114920323
NHAM323097:2:Tyes--3463510-0
NMEN122586:0:Tno--6733080206
NMEN122587:0:Tyes--012899771180
NMEN272831:0:Tno--6402590174
NMEN374833:0:Tno--013039901196
NMUL323848:3:Tyes-10961097109501094
NOCE323261:1:Tyes-10600105912311058
NPHA348780:2:Tyes--0---
NSEN222891:0:Tyes0--190-0
NSP103690:6:Tyes--4440--
NSP35761:1:Tyes2704-32280-3388
NSP387092:0:Tyes---0584-
NWIN323098:0:Tyes--2732612-0
OANT439375:5:Tyes--3240-250
OCAR504832:0:Tyes--03225-286
OIHE221109:0:Tyes0---13210
OTSU357244:0:Fyes---189-0
PACN267747:0:Tyes0--2--
PAER208963:0:Tyes-23140
PAER208964:0:Tno-21304
PARC259536:0:Tyes--20904420
PATL342610:0:Tyes473214740473
PCAR338963:0:Tyes2434-2898018602434
PCRY335284:1:Tyes1354-57502570
PDIS435591:0:Tyes0---1849-
PENT384676:0:Tyes-23140
PFLU205922:0:Tyes-21304
PFLU216595:1:Tyes-21304
PFLU220664:0:Tyes-45360
PGIN242619:0:Tyes----0-
PHAL326442:1:Tyes3223140
PING357804:0:Tyes023140
PINT246198:0:Tyes--0---
PINT246198:1:Tyes----0-
PLUM243265:0:Fyes-21304
PLUT319225:0:Tyes--8034250-
PMAR146891:0:Tyes--3960--
PMAR167539:0:Tyes--3490--
PMAR167540:0:Tyes--3720--
PMAR167542:0:Tyes--4120--
PMAR167546:0:Tyes--3660--
PMAR167555:0:Tyes--3500--
PMAR59920:0:Tno--3330--
PMAR74546:0:Tyes--3670--
PMAR74547:0:Tyes--0924--
PMAR93060:0:Tyes--4330--
PMEN399739:0:Tyes421304
PMOB403833:0:Tyes0-----
PMUL272843:1:Tyes05805791-0
PNAP365044:8:Tyes-2130614
PPEN278197:0:Tyes---0--
PPRO298386:2:Tyes023140
PPUT160488:0:Tno023140
PPUT351746:0:Tyes421304
PPUT76869:0:Tno023140
PRUM264731:0:Tyes----0-
PSP117:0:Tyes1017--0--
PSP296591:2:Tyes20732210222220127
PSP312153:0:Tyes0335334336333339
PSP56811:2:Tyes0-342-518-
PSTU379731:0:Tyes-23140
PSYR205918:0:Tyes-21304
PSYR223283:2:Tyes-23140
PTHE370438:0:Tyes----0-
RAKA293614:0:Fyes---4-0
RALB246199:0:Tyes---0--
RBEL336407:0:Tyes---5-0
RBEL391896:0:Fno-----0
RCAN293613:0:Fyes---4-0
RCAS383372:0:Tyes---0--
RCON272944:0:Tno---0-5
RDEN375451:4:Tyes618-2900847-0
RETL347834:5:Tyes0-3768948-0
REUT264198:3:Tyes3-1203
REUT381666:2:Tyes421304
RFEL315456:2:Tyes---5-0
RFER338969:1:Tyes23162130722
RLEG216596:4:Tyes0-----
RLEG216596:6:Tyes--43581049-0
RMAS416276:1:Tyes---0-5
RMET266264:2:Tyes421304
RPAL258594:0:Tyes--3133993-0
RPAL316055:0:Tyes--03929-211
RPAL316056:0:Tyes--2133778-0
RPAL316057:0:Tyes335-03973-335
RPAL316058:0:Tyes334-01289-334
RPOM246200:1:Tyes0-13291373-2035
RPRO272947:0:Tyes---0-4
RRIC392021:0:Fno---0-4
RRIC452659:0:Tyes---0-4
RRUB269796:1:Tyes556-2160-556
RSAL288705:0:Tyes997--02024-
RSOL267608:1:Tyes3691203369
RSP101510:3:Fyes0-14551143--
RSP357808:0:Tyes---0--
RSPH272943:4:Tyes1316-01626-1997
RSPH349101:2:Tno1264-01571-1945
RSPH349102:5:Tyes344-20310-2495
RTYP257363:0:Tno---0-5
RXYL266117:0:Tyes1846-0--1846
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