CANDIDATE ID: 461

CANDIDATE ID: 461

NUMBER OF GENES: 6
AVERAGE SCORE:    9.9940247e-1 (range=[0.0,1.0])
AVERAGE MINIMUM BLAST P-VAL:    1.0000000e+0

Gene List
List of organisms containing most genes from the group
    Phylogenetic tree highlighting these organisms (opens new page)
List of organisms containing very few or no genes from the group
List of organisms enriched for group
List of organisms depleted for group
Phylogenetic profile similarity with known pathways
Pairwise genome context scores
Pairwise Blast scores
Pathway or protein complex matches in target organism
Genome context matrix
    Genes and their orthologs in genome browser BioCyc pages



GENE LIST:

- G6100 (yafS) (b0213)
   Products of gene:
     - G6100-MONOMER (predicted S-adenosyl-L-methionine-dependent methyltransferase)

- G6099 (gloB) (b0212)
   Products of gene:
     - GLYOXII-MONOMER (glyoxalase II)
       Reactions:
        S-lactoyl-glutathione + H2O  ->  glutathione + (R)-lactate + H+
         In pathways
         METHGLYUT-PWY (superpathway of methylglyoxal degradation)
         PWY-5386 (methylglyoxal degradation I)

- EG11650 (yafD) (b0209)
   Products of gene:
     - EG11650-MONOMER (conserved protein)

- EG10860 (rnhA) (b0214)
   Products of gene:
     - EG10860-MONOMER (RNase HI, degrades RNA of DNA-RNA hybrids, participates in DNA replication)
       Reactions:
        EC# 3.1.26.4

- EG10246 (mltD) (b0211)
   Products of gene:
     - EG10246-MONOMER (MltD membrane-bound lytic murein transglycosylase D)
       Reactions:
        a peptidoglycan polymer  =  a peptidoglycan polymer with 1,6-anhydromuropeptide end + a peptidoglycan polymer with GlcNAc end

- EG10243 (dnaQ) (b0215)
   Products of gene:
     - EG10243-MONOMER (DNA polymerase III, ε subunit)
       Reactions:
        EC# 3.1.11.-
     - CPLX0-2361 (DNA polymerase III, core enzyme)
     - CPLX0-3803 (DNA polymerase III, holoenzyme)



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ORGANISMS CONTAINING AT LEAST 5 GENES FROM THE GROUP:

Total number of orgs: 138
Effective number of orgs (counting one per cluster within 468 clusters): 89

Organism list
Homologs in each organism in the list
Features enriched in organism list


Follow (ncbi) link, when present, to find the set of organism features for each organism
Org ID  Org Name  # genes in group found in org  
YPSE349747 ncbi Yersinia pseudotuberculosis IP 317586
YPSE273123 ncbi Yersinia pseudotuberculosis IP 329536
YPES386656 ncbi Yersinia pestis Pestoides F6
YPES377628 ncbi Yersinia pestis Nepal5166
YPES360102 ncbi Yersinia pestis Antiqua6
YPES349746 ncbi Yersinia pestis Angola6
YPES214092 ncbi Yersinia pestis CO926
YPES187410 ncbi Yersinia pestis KIM 106
YENT393305 ncbi Yersinia enterocolitica enterocolitica 80816
VVUL216895 ncbi Vibrio vulnificus CMCP66
VVUL196600 ncbi Vibrio vulnificus YJ0166
VPAR223926 ncbi Vibrio parahaemolyticus RIMD 22106336
VFIS312309 ncbi Vibrio fischeri ES1146
VEIS391735 ncbi Verminephrobacter eiseniae EF01-25
VCHO345073 ncbi Vibrio cholerae O3956
VCHO ncbi Vibrio cholerae O1 biovar El Tor str. N169616
TTUR377629 ncbi Teredinibacter turnerae T79015
TDEN292415 ncbi Thiobacillus denitrificans ATCC 252595
TCRU317025 ncbi Thiomicrospira crunogena XCL-26
STYP99287 ncbi Salmonella enterica enterica serovar Typhimurium str. LT26
SSP94122 ncbi Shewanella sp. ANA-35
SSON300269 ncbi Shigella sonnei Ss0466
SSED425104 ncbi Shewanella sediminis HAW-EB36
SPRO399741 ncbi Serratia proteamaculans 5686
SPEA398579 ncbi Shewanella pealeana ATCC 7003456
SONE211586 ncbi Shewanella oneidensis MR-15
SLOI323850 ncbi Shewanella loihica PV-46
SHIGELLA ncbi Shigella flexneri 2a str. 2457T6
SHAL458817 ncbi Shewanella halifaxensis HAW-EB46
SGLO343509 ncbi Sodalis glossinidius morsitans6
SFLE373384 ncbi Shigella flexneri 5 str. 84016
SFLE198214 ncbi Shigella flexneri 2a str. 3016
SENT454169 ncbi Salmonella enterica enterica serovar Heidelberg str. SL4766
SENT321314 ncbi Salmonella enterica enterica serovar Choleraesuis str. SC-B676
SENT295319 ncbi Salmonella enterica enterica serovar Paratyphi A str. ATCC 91506
SENT220341 ncbi Salmonella enterica enterica serovar Typhi str. CT186
SENT209261 ncbi Salmonella enterica enterica serovar Typhi str. Ty26
SDYS300267 ncbi Shigella dysenteriae Sd1976
SDEN318161 ncbi Shewanella denitrificans OS2175
SDEG203122 ncbi Saccharophagus degradans 2-405
SBOY300268 ncbi Shigella boydii Sb2276
SBAL402882 ncbi Shewanella baltica OS1855
SBAL399599 ncbi Shewanella baltica OS1955
RSOL267608 ncbi Ralstonia solanacearum GMI10005
RMET266264 ncbi Ralstonia metallidurans CH345
RFER338969 ncbi Rhodoferax ferrireducens T1185
REUT381666 ncbi Ralstonia eutropha H165
PSYR223283 ncbi Pseudomonas syringae pv. tomato str. DC30005
PSYR205918 ncbi Pseudomonas syringae pv. syringae B728a5
PSTU379731 ncbi Pseudomonas stutzeri A15015
PSP312153 ncbi Polynucleobacter necessarius asymbioticus QLW-P1DMWA-15
PSP296591 ncbi Polaromonas sp. JS6665
PPUT76869 ncbi Pseudomonas putida GB-15
PPUT351746 ncbi Pseudomonas putida F15
PPUT160488 ncbi Pseudomonas putida KT24405
PPRO298386 ncbi Photobacterium profundum SS96
PNAP365044 ncbi Polaromonas naphthalenivorans CJ25
PMEN399739 ncbi Pseudomonas mendocina ymp5
PLUM243265 ncbi Photorhabdus luminescens laumondii TTO16
PING357804 ncbi Psychromonas ingrahamii 376
PHAL326442 ncbi Pseudoalteromonas haloplanktis TAC1256
PFLU220664 ncbi Pseudomonas fluorescens Pf-55
PFLU216595 ncbi Pseudomonas fluorescens SBW255
PFLU205922 ncbi Pseudomonas fluorescens Pf0-15
PENT384676 ncbi Pseudomonas entomophila L485
PATL342610 ncbi Pseudoalteromonas atlantica T6c6
PAER208964 ncbi Pseudomonas aeruginosa PAO15
PAER208963 ncbi Pseudomonas aeruginosa UCBPP-PA145
NOCE323261 ncbi Nitrosococcus oceani ATCC 197075
NMUL323848 ncbi Nitrosospira multiformis ATCC 251965
NEUT335283 ncbi Nitrosomonas eutropha C915
NEUR228410 ncbi Nitrosomonas europaea ATCC 197185
MSUC221988 ncbi Mannheimia succiniciproducens MBEL55E5
MSP400668 ncbi Marinomonas sp. MWYL16
MPET420662 ncbi Methylibium petroleiphilum PM15
MFLA265072 ncbi Methylobacillus flagellatus KT5
MCAP243233 ncbi Methylococcus capsulatus Bath5
MAQU351348 ncbi Marinobacter aquaeolei VT85
LCHO395495 ncbi Leptothrix cholodnii SP-65
KPNE272620 ncbi Klebsiella pneumoniae pneumoniae MGH 785786
JSP375286 ncbi Janthinobacterium sp. Marseille5
ILOI283942 ncbi Idiomarina loihiensis L2TR5
HCHE349521 ncbi Hahella chejuensis KCTC 23965
HARS204773 ncbi Herminiimonas arsenicoxydans5
ESP42895 Enterobacter sp.6
EFER585054 ncbi Escherichia fergusonii ATCC 354696
ECOO157 ncbi Escherichia coli O157:H7 EDL9336
ECOL83334 Escherichia coli O157:H76
ECOL585397 ncbi Escherichia coli ED1a6
ECOL585057 ncbi Escherichia coli IAI396
ECOL585056 ncbi Escherichia coli UMN0266
ECOL585055 ncbi Escherichia coli 559896
ECOL585035 ncbi Escherichia coli S886
ECOL585034 ncbi Escherichia coli IAI16
ECOL481805 ncbi Escherichia coli ATCC 87396
ECOL469008 ncbi Escherichia coli BL21(DE3)6
ECOL439855 ncbi Escherichia coli SMS-3-56
ECOL413997 ncbi Escherichia coli B str. REL6066
ECOL409438 ncbi Escherichia coli SE116
ECOL405955 ncbi Escherichia coli APEC O16
ECOL364106 ncbi Escherichia coli UTI896
ECOL362663 ncbi Escherichia coli 5366
ECOL331111 ncbi Escherichia coli E24377A6
ECOL316407 ncbi Escherichia coli K-12 substr. W31106
ECOL199310 ncbi Escherichia coli CFT0736
ECAR218491 ncbi Pectobacterium atrosepticum SCRI10436
DARO159087 ncbi Dechloromonas aromatica RCB5
CVIO243365 ncbi Chromobacterium violaceum ATCC 124725
CSAL290398 ncbi Chromohalobacter salexigens DSM 30435
CJAP155077 Cellvibrio japonicus5
CBUR434922 ncbi Coxiella burnetii Dugway 5J108-1115
CBUR360115 ncbi Coxiella burnetii RSA 3315
CBUR227377 ncbi Coxiella burnetii RSA 4935
BVIE269482 ncbi Burkholderia vietnamiensis G45
BTHA271848 ncbi Burkholderia thailandensis E2645
BSP36773 Burkholderia sp.5
BPSE320373 ncbi Burkholderia pseudomallei 6685
BPSE320372 ncbi Burkholderia pseudomallei 1710b5
BPSE272560 ncbi Burkholderia pseudomallei K962435
BPER257313 ncbi Bordetella pertussis Tohama I5
BPAR257311 ncbi Bordetella parapertussis 128225
BMAL320389 ncbi Burkholderia mallei NCTC 102475
BMAL320388 ncbi Burkholderia mallei SAVP15
BMAL243160 ncbi Burkholderia mallei ATCC 233445
BCEN331272 ncbi Burkholderia cenocepacia HI24245
BCEN331271 ncbi Burkholderia cenocepacia AU 10545
BBRO257310 ncbi Bordetella bronchiseptica RB505
BAMB398577 ncbi Burkholderia ambifaria MC40-65
BAMB339670 ncbi Burkholderia ambifaria AMMD5
ASP76114 ncbi Aromatoleum aromaticum EbN15
ASP62928 ncbi Azoarcus sp. BH725
ASP232721 ncbi Acidovorax sp. JS425
ASAL382245 ncbi Aeromonas salmonicida salmonicida A4496
AHYD196024 Aeromonas hydrophila dhakensis6
AEHR187272 ncbi Alkalilimnicola ehrlichii MLHE-15
ABOR393595 ncbi Alcanivorax borkumensis SK25
ABAU360910 ncbi Bordetella avium 197N5
AAVE397945 ncbi Acidovorax citrulli AAC00-15


Names of the homologs of the genes in the group in each of these orgs
  G6100   G6099   EG11650   EG10860   EG10246   EG10243   
YPSE349747 YPSIP31758_1053YPSIP31758_1052YPSIP31758_1050YPSIP31758_1054YPSIP31758_1051YPSIP31758_1055
YPSE273123 YPTB2966YPTB2967YPTB2969YPTB2965YPTB2968YPTB2964
YPES386656 YPDSF_1632YPDSF_1633YPDSF_1635YPDSF_1631YPDSF_1634YPDSF_1630
YPES377628 YPN_2918YPN_2919YPN_2921YPN_2917YPN_2920YPN_2916
YPES360102 YPA_0558YPA_0557YPA_0555YPA_0559YPA_0556YPA_0560
YPES349746 YPANGOLA_A2684YPANGOLA_A2685YPANGOLA_A2687YPANGOLA_A2683YPANGOLA_A2686YPANGOLA_A2682
YPES214092 YPO1080YPO1079YPO1077YPO1081YPO1078YPO1082
YPES187410 Y3096Y3097Y3099Y3095Y3098Y3094
YENT393305 YE0920YE0919YE0917YE0921YE0918YE0922
VVUL216895 VV1_1884VV1_1883VV1_1880VV1_1886VV1_1882VV1_1887
VVUL196600 VV2531VV2532VV2535VV2530VV2533VV2529
VPAR223926 VP2294VP2295VP2298VP2293VP2296VP2292
VFIS312309 VF1937VF1938VF1941VF1936VF1939VF1935
VEIS391735 VEIS_0592VEIS_0591VEIS_0593VEIS_0590VEIS_2379
VCHO345073 VC0395_A1827VC0395_A1828VC0395_A1830VC0395_A1826VC0395_A1829VC0395_A1825
VCHO VC2235VC2236VC2238VC2234VC2237VC2233
TTUR377629 TERTU_2110TERTU_2109TERTU_2111TERTU_2108TERTU_2112
TDEN292415 TBD_1664TBD_1665TBD_1663TBD_1666TBD_1662
TCRU317025 TCR_0927TCR_0926TCR_0933TCR_0928TCR_0925TCR_0930
STYP99287 STM0262STM0261STM0258STM0263STM0260STM0264
SSP94122 SHEWANA3_2368SHEWANA3_2369SHEWANA3_2366SHEWANA3_2370SHEWANA3_2365
SSON300269 SSO_0227SSO_0226SSO_0223SSO_0228SSO_0225SSO_0229
SSED425104 SSED_1990SSED_1989SSED_2319SSED_1992SSED_1988SSED_1993
SPRO399741 SPRO_0910SPRO_0909SPRO_0907SPRO_0911SPRO_0908SPRO_0912
SPEA398579 SPEA_2405SPEA_2406SPEA_2239SPEA_2403SPEA_2407SPEA_2402
SONE211586 SO_2562SO_2563SO_2560SO_2564SO_2559
SLOI323850 SHEW_2113SHEW_2114SHEW_1933SHEW_2112SHEW_2115SHEW_2111
SHIGELLA YAFSGLOBYAFDRNHADNIRDNAQ
SHAL458817 SHAL_1872SHAL_1871SHAL_2223SHAL_1874SHAL_1870SHAL_1875
SGLO343509 SG0590SG0589SG0587SG0591SG0588SG0592
SFLE373384 SFV_0197SFV_0196SFV_0193SFV_0199SFV_0195SFV_0198
SFLE198214 AAN41861.1AAN41860.1AAN41857.1AAN41862.1AAN41859.1AAN41863.1
SENT454169 SEHA_C0300SEHA_C0299SEHA_C0296SEHA_C0301SEHA_C0298SEHA_C0302
SENT321314 SCH_0258SCH_0257SCH_0254SCH_0259SCH_0256SCH_0260
SENT295319 SPA2507SPA2508SPA2511SPA2506SPA2509SPA2505
SENT220341 STY0283STY0282STY0279STY0284STY0281STY0285
SENT209261 T2603T2604T2607T2602T2605T2601
SDYS300267 SDY_0232SDY_0231SDY_0228SDY_0233SDY_0230SDY_0234
SDEN318161 SDEN_2020SDEN_2021SDEN_2019SDEN_2022SDEN_2018
SDEG203122 SDE_2022SDE_2023SDE_0066SDE_2024SDE_2021
SBOY300268 SBO_0202SBO_0201SBO_0198SBO_0203SBO_0200SBO_0204
SBAL402882 SHEW185_2012SHEW185_2011SHEW185_2014SHEW185_2010SHEW185_2015
SBAL399599 SBAL195_2060SBAL195_2059SBAL195_2062SBAL195_2058SBAL195_2063
RSOL267608 RSC1514RSC1515RSC1513RSC1516RSC1872
RMET266264 RMET_2207RMET_2206RMET_2208RMET_2205RMET_2209
RFER338969 RFER_1463RFER_1462RFER_1464RFER_1461RFER_2183
REUT381666 H16_A2465H16_A2464H16_A2466H16_A2463H16_A2467
PSYR223283 PSPTO_3713PSPTO_3714PSPTO_3712PSPTO_3715PSPTO_3711
PSYR205918 PSYR_1762PSYR_1761PSYR_1763PSYR_1760PSYR_1764
PSTU379731 PST_2253PST_2254PST_2252PST_2255PST_2251
PSP312153 PNUC_1023PNUC_1022PNUC_1024PNUC_1021PNUC_1027
PSP296591 BPRO_2280BPRO_2055BPRO_2281BPRO_2278BPRO_2184
PPUT76869 PPUTGB1_3715PPUTGB1_3716PPUTGB1_3714PPUTGB1_3717PPUTGB1_3713
PPUT351746 PPUT_1722PPUT_1721PPUT_1723PPUT_1720PPUT_1724
PPUT160488 PP_4143PP_4144PP_4142PP_4145PP_4141
PPRO298386 PBPRA2919PBPRA2920PBPRA2923PBPRA2918PBPRA2921PBPRA2917
PNAP365044 PNAP_1679PNAP_1678PNAP_1680PNAP_1677PNAP_2284
PMEN399739 PMEN_2065PMEN_2064PMEN_2066PMEN_2063PMEN_2067
PLUM243265 PLU0941PLU0940PLU0699PLU0942PLU0939PLU0943
PING357804 PING_0497PING_0498PING_3327PING_0496PING_0499PING_0495
PHAL326442 PSHAA1965PSHAA1966PSHAA2830PSHAA1964PSHAA1967PSHAA1963
PFLU220664 PFL_3298PFL_3299PFL_3297PFL_3300PFL_3294
PFLU216595 PFLU2644PFLU2643PFLU2645PFLU2642PFLU2646
PFLU205922 PFL_2185PFL_2184PFL_2186PFL_2183PFL_2187
PENT384676 PSEEN3560PSEEN3561PSEEN3559PSEEN3562PSEEN3558
PATL342610 PATL_1896PATL_1895PATL_1468PATL_2365PATL_1894PATL_2364
PAER208964 PA1814PA1813PA1815PA1812PA1816
PAER208963 PA14_41070PA14_41080PA14_41060PA14_41090PA14_41050
NOCE323261 NOC_2816NOC_1750NOC_2815NOC_2988NOC_2814
NMUL323848 NMUL_A1620NMUL_A1621NMUL_A1619NMUL_A0517NMUL_A1618
NEUT335283 NEUT_2177NEUT_2178NEUT_2176NEUT_2469NEUT_2175
NEUR228410 NE0139NE0138NE0140NE2421NE0141
MSUC221988 MS0945MS0946MS0872MS1571MS1570
MSP400668 MMWYL1_1703MMWYL1_1702MMWYL1_1340MMWYL1_1704MMWYL1_1701MMWYL1_1705
MPET420662 MPE_A2528MPE_A2529MPE_A2527MPE_A2530MPE_A2256
MFLA265072 MFLA_1480MFLA_1481MFLA_1479MFLA_1482MFLA_1478
MCAP243233 MCA_2029MCA_0343MCA_0719MCA_2028MCA_0720
MAQU351348 MAQU_1535MAQU_1536MAQU_1534MAQU_1537MAQU_1533
LCHO395495 LCHO_1971LCHO_1972LCHO_1970LCHO_1973LCHO_1041
KPNE272620 GKPORF_B4519GKPORF_B4517GKPORF_B4514GKPORF_B4518GKPORF_B4516GKPORF_B4520
JSP375286 MMA_1209MMA_1210MMA_1211MMA_1208MMA_1212
ILOI283942 IL1696IL1697IL1694IL1698IL1693
HCHE349521 HCH_02526HCH_02525HCH_02527HCH_02524HCH_02528
HARS204773 HEAR2320HEAR2321HEAR2319HEAR2322HEAR2318
ESP42895 ENT638_0747ENT638_0746ENT638_0743ENT638_0748ENT638_0745ENT638_0749
EFER585054 EFER_0242EFER_0241EFER_0238EFER_0243EFER_0240EFER_0244
ECOO157 YAFSGLOBYAFDRNHADNIRDNAQ
ECOL83334 ECS0209ECS0208ECS0205ECS0210ECS0207ECS0211
ECOL585397 ECED1_0218ECED1_0217ECED1_0214ECED1_0219ECED1_0216ECED1_0220
ECOL585057 ECIAI39_0436ECIAI39_0437ECIAI39_0440ECIAI39_0435ECIAI39_0438ECIAI39_0434
ECOL585056 ECUMN_0210ECUMN_0209ECUMN_0206ECUMN_0211ECUMN_0208ECUMN_0212
ECOL585055 EC55989_0212EC55989_0211EC55989_0208EC55989_0213EC55989_0210EC55989_0214
ECOL585035 ECS88_0228ECS88_0227ECS88_0224ECS88_0229ECS88_0226ECS88_0230
ECOL585034 ECIAI1_0221ECIAI1_0220ECIAI1_0217ECIAI1_0222ECIAI1_0219ECIAI1_0223
ECOL481805 ECOLC_3452ECOLC_3453ECOLC_3456ECOLC_3451ECOLC_3454ECOLC_3450
ECOL469008 ECBD_3411ECBD_3412ECBD_3415ECBD_3410ECBD_3413ECBD_3409
ECOL439855 ECSMS35_0228ECSMS35_0226ECSMS35_0223ECSMS35_0227ECSMS35_0225ECSMS35_0229
ECOL413997 ECB_00206ECB_00205ECB_00202ECB_00207ECB_00204ECB_00208
ECOL409438 ECSE_0209ECSE_0208ECSE_0205ECSE_0210ECSE_0207ECSE_0211
ECOL405955 APECO1_1777APECO1_1778APECO1_1781APECO1_1776APECO1_1779APECO1_1775
ECOL364106 UTI89_C0232UTI89_C0231UTI89_C0228UTI89_C0233UTI89_C0230UTI89_C0234
ECOL362663 ECP_0219ECP_0218ECP_0215ECP_0220ECP_0217ECP_0221
ECOL331111 ECE24377A_0220ECE24377A_0217ECE24377A_0214ECE24377A_0219ECE24377A_0216ECE24377A_0221
ECOL316407 ECK0213:JW0203:B0213ECK0212:JW0202:B0212ECK0209:JW5017:B0209ECK0214:JW0204:B0214ECK0211:JW5018:B0211ECK0215:JW0205:B0215
ECOL199310 C0250C0249C0246C0251C0248C0252
ECAR218491 ECA3341ECA3342ECA3344ECA3340ECA3343ECA3339
DARO159087 DARO_1594DARO_1595DARO_1593DARO_1320DARO_1592
CVIO243365 CV_1255CV_1254CV_1256CV_1253CV_1257
CSAL290398 CSAL_1943CSAL_1944CSAL_1942CSAL_1945CSAL_1941
CJAP155077 CJA_2050CJA_2052CJA_2049CJA_2053CJA_2048
CBUR434922 COXBU7E912_1764COXBU7E912_1765COXBU7E912_1763COXBU7E912_1767COXBU7E912_1761
CBUR360115 COXBURSA331_A0423COXBURSA331_A0422COXBURSA331_A0424COXBURSA331_A0420COXBURSA331_A0426
CBUR227377 CBU_0315CBU_0314CBU_0316CBU_0313CBU_0317
BVIE269482 BCEP1808_1239BCEP1808_1240BCEP1808_1238BCEP1808_1241BCEP1808_1237
BTHA271848 BTH_I2789BTH_I2788BTH_I2790BTH_I2787BTH_I2791
BSP36773 BCEP18194_A4428BCEP18194_A4429BCEP18194_A4427BCEP18194_A4430BCEP18194_A4426
BPSE320373 BURPS668_1467BURPS668_1468BURPS668_1466BURPS668_1469BURPS668_1465
BPSE320372 BURPS1710B_A1694BURPS1710B_A1695BURPS1710B_A1693BURPS1710B_A1697BURPS1710B_A1692
BPSE272560 BPSL1343BPSL1344BPSL1342BPSL1345BPSL1341
BPER257313 BP3212BP3213BP3211BP3214BP0406
BPAR257311 BPP3835BPP3836BPP3834BPP3837BPP3831
BMAL320389 BMA10247_0557BMA10247_0558BMA10247_0556BMA10247_0559BMA10247_0555
BMAL320388 BMASAVP1_A1274BMASAVP1_A1275BMASAVP1_A1273BMASAVP1_A1276BMASAVP1_A1272
BMAL243160 BMA_0764BMA_0765BMA_0763BMA_0766BMA_0762
BCEN331272 BCEN2424_1286BCEN2424_1287BCEN2424_1285BCEN2424_1288BCEN2424_1284
BCEN331271 BCEN_0805BCEN_0806BCEN_0804BCEN_0807BCEN_0803
BBRO257310 BB4279BB4280BB4278BB4281BB4275
BAMB398577 BAMMC406_1175BAMMC406_1176BAMMC406_1174BAMMC406_1177BAMMC406_1173
BAMB339670 BAMB_1163BAMB_1164BAMB_1162BAMB_1165BAMB_1161
ASP76114 EBA6459EBA6461EBA6458EBA6465EBA6456
ASP62928 AZO2056AZO2057AZO2055AZO2060AZO2054
ASP232721 AJS_1744AJS_1743AJS_1745AJS_1742AJS_2138
ASAL382245 ASA_2789ASA_2790ASA_2792ASA_2788ASA_2791ASA_2787
AHYD196024 AHA_1569AHA_1567AHA_1565AHA_1568AHA_1566AHA_1570
AEHR187272 MLG_1993MLG_1994MLG_1992MLG_1995MLG_1991
ABOR393595 ABO_1223ABO_1222ABO_1224ABO_1221ABO_1225
ABAU360910 BAV2935BAV2936BAV2934BAV2937BAV2931
AAVE397945 AAVE_2652AAVE_2651AAVE_2653AAVE_2650AAVE_2449


Organism features enriched in list (features available for 133 out of the 138 orgs in the list)
Feature    Pvalue       Num occurrences in list  Total num occurrences  
Arrangment:Chains 0.0003151992
Arrangment:Pairs 0.006582435112
Disease:Bubonic_plague 0.000129066
Disease:Dysentery 0.000129066
Disease:Gastroenteritis 0.00004041013
Endospores:No 0.000060830211
GC_Content_Range4:0-40 1.248e-291213
GC_Content_Range4:40-60 1.013e-1388224
GC_Content_Range4:60-100 0.004405144145
GC_Content_Range7:30-40 2.145e-211166
GC_Content_Range7:40-50 0.002367938117
GC_Content_Range7:50-60 6.022e-1050107
GC_Content_Range7:60-70 0.000810844134
Genome_Size_Range5:2-4 3.233e-820197
Genome_Size_Range5:4-6 5.173e-2491184
Genome_Size_Range5:6-10 0.00009422247
Genome_Size_Range9:2-3 0.000012211120
Genome_Size_Range9:3-4 0.0042511977
Genome_Size_Range9:4-5 1.409e-94696
Genome_Size_Range9:5-6 1.344e-104588
Genome_Size_Range9:6-8 5.593e-62138
Gram_Stain:Gram_Neg 4.830e-24123333
Habitat:Host-associated 0.003678035206
Habitat:Multiple 0.000840555178
Habitat:Specialized 0.0055915553
Motility:No 8.795e-911151
Motility:Yes 4.432e-1397267
Optimal_temp.:- 0.003929471257
Oxygen_Req:Anaerobic 1.518e-93102
Oxygen_Req:Facultative 1.584e-1077201
Pathogenic_in:No 0.001761838226
Shape:Coccus 3.880e-8282
Shape:Rod 1.865e-11111347
Shape:Spiral 0.0012091134
Temp._range:Mesophilic 0.0015855119473
Temp._range:Thermophilic 0.0009454135



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ORGANISMS CONTAINING AT MOST 1 GENES FROM THE GROUP:

Total number of orgs: 204
Effective number of orgs (counting one per cluster within 468 clusters): 165

Organism list
Homologs in each organism in the list
Features enriched in organism list


Follow (ncbi) link, when present, to find the set of organism features for each organism
Org ID  Org Name  # genes in group found in org  
UURE95667 Ureaplasma urealyticum serovar 130
UURE95664 Ureaplasma urealyticum serovar 100
UPAR505682 ncbi Ureaplasma parvum serovar 3 str. ATCC 278150
UMET351160 ncbi uncultured methanogenic archaeon RC-I0
TWHI218496 ncbi Tropheryma whipplei TW08/271
TWHI203267 ncbi Tropheryma whipplei Twist1
TVOL273116 ncbi Thermoplasma volcanium GSS10
TSP28240 Thermotoga sp.1
TPET390874 ncbi Thermotoga petrophila RKU-11
TPEN368408 ncbi Thermofilum pendens Hrk 50
TMAR243274 ncbi Thermotoga maritima MSB81
TLET416591 ncbi Thermotoga lettingae TMO1
TKOD69014 ncbi Thermococcus kodakarensis KOD10
TFUS269800 ncbi Thermobifida fusca YX0
TACI273075 ncbi Thermoplasma acidophilum DSM 17280
STRO369723 ncbi Salinispora tropica CNB-4400
STOK273063 ncbi Sulfolobus tokodaii 71
STHE322159 ncbi Streptococcus thermophilus LMD-90
STHE299768 ncbi Streptococcus thermophilus CNRZ10660
STHE264199 ncbi Streptococcus thermophilus LMG 183110
SSUI391296 ncbi Streptococcus suis 98HAH330
SSUI391295 ncbi Streptococcus suis 05ZYH330
SSOL273057 ncbi Sulfolobus solfataricus P21
SSAP342451 ncbi Staphylococcus saprophyticus saprophyticus ATCC 153051
SPYO370554 ncbi Streptococcus pyogenes MGAS107500
SPYO370553 ncbi Streptococcus pyogenes MGAS20960
SPYO370552 ncbi Streptococcus pyogenes MGAS102700
SPYO370551 ncbi Streptococcus pyogenes MGAS94290
SPYO319701 ncbi Streptococcus pyogenes MGAS61800
SPYO293653 ncbi Streptococcus pyogenes MGAS50050
SPYO286636 ncbi Streptococcus pyogenes MGAS103940
SPYO198466 ncbi Streptococcus pyogenes MGAS3150
SPYO193567 ncbi Streptococcus pyogenes SSI-10
SPYO186103 ncbi Streptococcus pyogenes MGAS82320
SPYO160490 ncbi Streptococcus pyogenes M1 GAS0
SPNE488221 ncbi Streptococcus pneumoniae 705850
SPNE487214 ncbi Streptococcus pneumoniae Hungary19A-60
SPNE487213 ncbi Streptococcus pneumoniae Taiwan19F-140
SPNE171101 ncbi Streptococcus pneumoniae R60
SPNE170187 ncbi Streptococcus pneumoniae G540
SPNE1313 Streptococcus pneumoniae0
SMUT210007 ncbi Streptococcus mutans UA1590
SMAR399550 ncbi Staphylothermus marinus F10
SGOR29390 Streptococcus gordonii Challis0
SAVE227882 ncbi Streptomyces avermitilis MA-46801
SARE391037 ncbi Salinispora arenicola CNS-2050
SAGA211110 ncbi Streptococcus agalactiae NEM3160
SAGA208435 ncbi Streptococcus agalactiae 2603V/R0
SAGA205921 ncbi Streptococcus agalactiae A9090
SACI330779 ncbi Sulfolobus acidocaldarius DSM 6390
RSP357808 ncbi Roseiflexus sp. RS-11
RCAS383372 ncbi Roseiflexus castenholzii DSM 139411
RBEL391896 ncbi Rickettsia bellii OSU 85-3891
RALB246199 Ruminococcus albus 81
PTOR263820 ncbi Picrophilus torridus DSM 97900
PTHE370438 ncbi Pelotomaculum thermopropionicum SI1
PSP117 Pirellula sp.1
PRUM264731 ncbi Prevotella ruminicola 231
PPEN278197 ncbi Pediococcus pentosaceus ATCC 257451
PMOB403833 ncbi Petrotoga mobilis SJ950
PISL384616 ncbi Pyrobaculum islandicum DSM 41840
PHOR70601 ncbi Pyrococcus horikoshii OT30
PGIN242619 ncbi Porphyromonas gingivalis W831
PFUR186497 ncbi Pyrococcus furiosus DSM 36380
PDIS435591 ncbi Parabacteroides distasonis ATCC 85031
PAST100379 Onion yellows phytoplasma0
PARS340102 ncbi Pyrobaculum arsenaticum DSM 135140
PAER178306 ncbi Pyrobaculum aerophilum IM20
PACN267747 ncbi Propionibacterium acnes KPA1712021
PABY272844 ncbi Pyrococcus abyssi GE50
NPHA348780 ncbi Natronomonas pharaonis DSM 21601
NFAR247156 ncbi Nocardia farcinica IFM 101521
MTUB419947 ncbi Mycobacterium tuberculosis H37Ra1
MTUB336982 ncbi Mycobacterium tuberculosis F111
MTHE349307 ncbi Methanosaeta thermophila PT0
MTHE264732 ncbi Moorella thermoacetica ATCC 390731
MTHE187420 ncbi Methanothermobacter thermautotrophicus Delta H0
MTBRV ncbi Mycobacterium tuberculosis H37Rv1
MTBCDC ncbi Mycobacterium tuberculosis CDC15511
MSYN262723 ncbi Mycoplasma synoviae 530
MSTA339860 ncbi Methanosphaera stadtmanae DSM 30910
MSED399549 ncbi Metallosphaera sedula DSM 53480
MPUL272635 ncbi Mycoplasma pulmonis UAB CTIP0
MPNE272634 ncbi Mycoplasma pneumoniae M1290
MPEN272633 ncbi Mycoplasma penetrans HF-20
MMYC272632 ncbi Mycoplasma mycoides mycoides SC str. PG10
MMOB267748 ncbi Mycoplasma mobile 163K0
MMAZ192952 ncbi Methanosarcina mazei Go10
MMAR444158 ncbi Methanococcus maripaludis C60
MMAR426368 ncbi Methanococcus maripaludis C70
MMAR402880 ncbi Methanococcus maripaludis C50
MMAR368407 ncbi Methanoculleus marisnigri JR10
MMAR267377 ncbi Methanococcus maripaludis S20
MLEP272631 ncbi Mycobacterium leprae TN1
MLAB410358 ncbi Methanocorpusculum labreanum Z0
MKAN190192 ncbi Methanopyrus kandleri AV190
MJAN243232 ncbi Methanocaldococcus jannaschii DSM 26610
MHYO295358 ncbi Mycoplasma hyopneumoniae 2320
MHYO262722 ncbi Mycoplasma hyopneumoniae 74480
MHYO262719 ncbi Mycoplasma hyopneumoniae J0
MHUN323259 ncbi Methanospirillum hungatei JF-10
MGEN243273 ncbi Mycoplasma genitalium G370
MFLO265311 ncbi Mesoplasma florum L10
MCAP340047 ncbi Mycoplasma capricolum capricolum ATCC 273430
MBUR259564 ncbi Methanococcoides burtonii DSM 62420
MBOV410289 ncbi Mycobacterium bovis BCG str. Pasteur 1173P21
MBOV233413 ncbi Mycobacterium bovis AF2122/971
MBAR269797 ncbi Methanosarcina barkeri Fusaro0
MAVI243243 ncbi Mycobacterium avium 1041
MART243272 ncbi Mycoplasma arthritidis 158L3-10
MAER449447 ncbi Microcystis aeruginosa NIES-8431
MAEO419665 ncbi Methanococcus aeolicus Nankai-30
MACE188937 ncbi Methanosarcina acetivorans C2A0
LXYL281090 ncbi Leifsonia xyli xyli CTCB071
LWEL386043 ncbi Listeria welshimeri serovar 6b str. SLCC53341
LSPH444177 ncbi Lysinibacillus sphaericus C3-411
LSAK314315 ncbi Lactobacillus sakei sakei 23K1
LPLA220668 ncbi Lactobacillus plantarum WCFS11
LMON265669 ncbi Listeria monocytogenes 4b F23651
LMON169963 ncbi Listeria monocytogenes EGD-e1
LMES203120 ncbi Leuconostoc mesenteroides mesenteroides ATCC 82930
LJOH257314 ncbi Lactobacillus johnsonii NCC 5331
LINT267671 ncbi Leptospira interrogans serovar Copenhageni str. Fiocruz L1-1300
LINT189518 ncbi Leptospira interrogans serovar Lai str. 566011
LINN272626 ncbi Listeria innocua Clip112621
LHEL405566 ncbi Lactobacillus helveticus DPC 45711
LGAS324831 ncbi Lactobacillus gasseri ATCC 333231
LDEL390333 ncbi Lactobacillus delbrueckii bulgaricus ATCC 118421
LDEL321956 ncbi Lactobacillus delbrueckii bulgaricus ATCC BAA-3651
LCAS321967 ncbi Lactobacillus casei ATCC 3341
LBRE387344 ncbi Lactobacillus brevis ATCC 3671
LBOR355277 ncbi Leptospira borgpetersenii serovar Hardjo-bovis JB1971
LBOR355276 ncbi Leptospira borgpetersenii serovar Hardjo-bovis L5501
LBIF456481 ncbi Leptospira biflexa serovar Patoc strain Patoc 1 (Paris)1
LBIF355278 ncbi Leptospira biflexa serovar Patoc strain Patoc 1 (Ames)1
LACI272621 ncbi Lactobacillus acidophilus NCFM1
KRAD266940 ncbi Kineococcus radiotolerans SRS302161
IHOS453591 ncbi Ignicoccus hospitalis KIN4/I0
HWAL362976 ncbi Haloquadratum walsbyi DSM 167900
HSP64091 ncbi Halobacterium sp. NRC-10
HSAL478009 ncbi Halobacterium salinarum R10
HMUK485914 ncbi Halomicrobium mukohataei DSM 122860
HMAR272569 ncbi Haloarcula marismortui ATCC 430491
HBUT415426 ncbi Hyperthermus butylicus DSM 54560
GTHE420246 ncbi Geobacillus thermodenitrificans NG80-21
GKAU235909 ncbi Geobacillus kaustophilus HTA4261
FSUC59374 ncbi Fibrobacter succinogenes succinogenes S851
FSP1855 Frankia sp. EAN1pec1
FSP106370 ncbi Frankia sp. CcI31
FNUC190304 ncbi Fusobacterium nucleatum nucleatum ATCC 255861
FNOD381764 ncbi Fervidobacterium nodosum Rt17-B10
EFAE226185 ncbi Enterococcus faecalis V5831
ECHA205920 ncbi Ehrlichia chaffeensis Arkansas1
DSP255470 ncbi Dehalococcoides sp. CBDB11
DSP216389 ncbi Dehalococcoides sp. BAV11
DHAF138119 ncbi Desulfitobacterium hafniense Y511
DETH243164 ncbi Dehalococcoides ethenogenes 1951
CTRA471473 ncbi Chlamydia trachomatis L2b/UCH-1/proctitis0
CTRA471472 ncbi Chlamydia trachomatis 434/Bu0
CTET212717 ncbi Clostridium tetani E881
CSUL444179 ncbi Candidatus Sulcia muelleri GWSS0
CPRO264201 ncbi Candidatus Protochlamydia amoebophila UWE250
CPNE182082 ncbi Chlamydophila pneumoniae TW-1830
CPNE138677 ncbi Chlamydophila pneumoniae J1380
CPNE115713 ncbi Chlamydophila pneumoniae CWL0290
CPNE115711 ncbi Chlamydophila pneumoniae AR390
CNOV386415 ncbi Clostridium novyi NT1
CMUR243161 ncbi Chlamydia muridarum Nigg0
CMET456442 ncbi Candidatus Methanoregula boonei 6A80
CMAQ397948 ncbi Caldivirga maquilingensis IC-1670
CKOR374847 ncbi Candidatus Korarchaeum cryptofilum OPF81
CKLU431943 ncbi Clostridium kluyveri DSM 5551
CJEI306537 ncbi Corynebacterium jeikeium K4111
CGLU196627 ncbi Corynebacterium glutamicum ATCC 130321
CFEL264202 ncbi Chlamydophila felis Fe/C-560
CEFF196164 ncbi Corynebacterium efficiens YS-3140
CDIP257309 ncbi Corynebacterium diphtheriae NCTC 131290
CCAV227941 ncbi Chlamydophila caviae GPIC0
CABO218497 ncbi Chlamydophila abortus S26/30
BXEN266265 ncbi Burkholderia xenovorans LB4000
BWEI315730 ncbi Bacillus weihenstephanensis KBAB41
BTUR314724 ncbi Borrelia turicatae 91E1351
BTHE226186 ncbi Bacteroides thetaiotaomicron VPI-54821
BLON206672 ncbi Bifidobacterium longum NCC27051
BHER314723 ncbi Borrelia hermsii DAH0
BHAL272558 ncbi Bacillus halodurans C-1251
BGAR290434 ncbi Borrelia garinii PBi0
BFRA295405 ncbi Bacteroides fragilis YCH461
BFRA272559 ncbi Bacteroides fragilis NCTC 93431
BCER405917 Bacillus cereus W1
BCER226900 ncbi Bacillus cereus ATCC 145791
BBUR224326 ncbi Borrelia burgdorferi B310
BAPH372461 ncbi Buchnera aphidicola Cc (Cinara cedri)1
BAFZ390236 ncbi Borrelia afzelii PKo0
AYEL322098 ncbi Aster yellows witches-broom phytoplasma AYWB0
AURANTIMONAS Aurantimonas manganoxydans SI85-9A10
APER272557 ncbi Aeropyrum pernix K10
AORE350688 ncbi Alkaliphilus oremlandii OhILAs1
ANAE240017 Actinomyces oris MG11
AMET293826 ncbi Alkaliphilus metalliredigens QYMF1
ALAI441768 ncbi Acholeplasma laidlawii PG-8A1
AFUL224325 ncbi Archaeoglobus fulgidus DSM 43040
ACEL351607 ncbi Acidothermus cellulolyticus 11B0
ABAC204669 ncbi Candidatus Koribacter versatilis Ellin3451


Names of the homologs of the genes in the group in each of these orgs
  G6100   G6099   EG11650   EG10860   EG10246   EG10243   
UURE95667
UURE95664
UPAR505682
UMET351160
TWHI218496 TW0505
TWHI203267 TW239
TVOL273116
TSP28240 TRQ2_0439
TPET390874 TPET_0424
TPEN368408
TMAR243274 TM_0496
TLET416591 TLET_0239
TKOD69014
TFUS269800
TACI273075
STRO369723
STOK273063 ST2022
STHE322159
STHE299768
STHE264199
SSUI391296
SSUI391295
SSOL273057 SSO3132
SSAP342451 SSP2291
SPYO370554
SPYO370553
SPYO370552
SPYO370551
SPYO319701
SPYO293653
SPYO286636
SPYO198466
SPYO193567
SPYO186103
SPYO160490
SPNE488221
SPNE487214
SPNE487213
SPNE171101
SPNE170187
SPNE1313
SMUT210007
SMAR399550
SGOR29390
SAVE227882 SAV1138
SARE391037
SAGA211110
SAGA208435
SAGA205921
SACI330779
RSP357808 ROSERS_1014
RCAS383372 RCAS_1189
RBEL391896 A1I_05965
RALB246199 GRAORF_3525
PTOR263820
PTHE370438 PTH_1980
PSP117 RB10271
PRUM264731 GFRORF0014
PPEN278197 PEPE_0304
PMOB403833
PISL384616
PHOR70601
PGIN242619 PG_0139
PFUR186497
PDIS435591 BDI_2556
PAST100379
PARS340102
PAER178306
PACN267747 PPA1729
PABY272844
NPHA348780 NP4032A
NFAR247156 NFA56240
MTUB419947 MRA_0643
MTUB336982 TBFG_10645
MTHE349307
MTHE264732 MOTH_0619
MTHE187420
MTBRV RV0634C
MTBCDC MT0662
MSYN262723
MSTA339860
MSED399549
MPUL272635
MPNE272634
MPEN272633
MMYC272632
MMOB267748
MMAZ192952
MMAR444158
MMAR426368
MMAR402880
MMAR368407
MMAR267377
MLEP272631 ML1912
MLAB410358
MKAN190192
MJAN243232
MHYO295358
MHYO262722
MHYO262719
MHUN323259
MGEN243273
MFLO265311
MCAP340047
MBUR259564
MBOV410289 BCG_0681C
MBOV233413 MB0651C
MBAR269797
MAVI243243 MAV_4532
MART243272
MAER449447 MAE_49310
MAEO419665
MACE188937
LXYL281090 LXX15090
LWEL386043 LWE2639
LSPH444177 BSPH_1135
LSAK314315 LSA1437
LPLA220668 LP_2593
LMON265669 LMOF2365_2670
LMON169963 LMO2691
LMES203120
LJOH257314 LJ_0098
LINT267671
LINT189518 LA2116
LINN272626 LIN2838
LHEL405566 LHV_0132
LGAS324831 LGAS_0096
LDEL390333 LDB0176
LDEL321956 LBUL_0152
LCAS321967 LSEI_2646
LBRE387344 LVIS_1930
LBOR355277 LBJ_1894
LBOR355276 LBL_1390
LBIF456481 LEPBI_I1900
LBIF355278 LBF_1845
LACI272621 LBA0121
KRAD266940 KRAD_3231
IHOS453591
HWAL362976
HSP64091
HSAL478009
HMUK485914
HMAR272569 RRNAC1117
HBUT415426
GTHE420246 GTNG_1112
GKAU235909 GK1258
FSUC59374 FSU0253
FSP1855 FRANEAN1_2264
FSP106370 FRANCCI3_1241
FNUC190304 FN0281
FNOD381764
EFAE226185 EF_0799
ECHA205920 ECH_0263
DSP255470 CBDBA762
DSP216389 DEHABAV1_0711
DHAF138119 DSY2449
DETH243164 DET_0785
CTRA471473
CTRA471472
CTET212717 CTC_02196
CSUL444179
CPRO264201
CPNE182082
CPNE138677
CPNE115713
CPNE115711
CNOV386415 NT01CX_1846
CMUR243161
CMET456442
CMAQ397948
CKOR374847 KCR_0511
CKLU431943 CKL_3129
CJEI306537 JK0693
CGLU196627 CG0388
CFEL264202
CEFF196164
CDIP257309
CCAV227941
CABO218497
BXEN266265
BWEI315730 BCERKBAB4_3640
BTUR314724 BT0625
BTHE226186 BT_3999
BLON206672 BL1624
BHER314723
BHAL272558 BH2418
BGAR290434
BFRA295405 BF0765
BFRA272559 BF0693
BCER405917 BCE_3859
BCER226900 BC_3816
BBUR224326
BAPH372461 BCC_156
BAFZ390236
AYEL322098
AURANTIMONAS
APER272557
AORE350688 CLOS_1523
ANAE240017 ANA_0099
AMET293826 AMET_2355
ALAI441768 ACL_0960
AFUL224325
ACEL351607
ABAC204669 ACID345_0549


Organism features enriched in list (features available for 192 out of the 204 orgs in the list)
Feature    Pvalue       Num occurrences in list  Total num occurrences  
Arrangment:Chains 0.00198724292
Arrangment:Pairs 0.000114021112
Disease:Pharyngitis 0.000125388
Disease:Wide_range_of_infections 4.059e-61111
Disease:bronchitis_and_pneumonitis 0.000125388
Endospores:No 9.708e-22122211
GC_Content_Range4:0-40 6.149e-694213
GC_Content_Range4:60-100 0.000039029145
GC_Content_Range7:0-30 0.00338772447
GC_Content_Range7:30-40 0.000954870166
GC_Content_Range7:40-50 0.003871350117
GC_Content_Range7:50-60 0.000023518107
GC_Content_Range7:60-70 0.000017325134
Genome_Size_Range5:0-2 2.106e-1490155
Genome_Size_Range5:4-6 4.058e-931184
Genome_Size_Range5:6-10 0.0000431447
Genome_Size_Range9:0-1 1.139e-62127
Genome_Size_Range9:1-2 1.440e-869128
Genome_Size_Range9:4-5 0.00015581796
Genome_Size_Range9:5-6 0.00006371488
Genome_Size_Range9:6-8 0.0000280238
Gram_Stain:Gram_Neg 5.973e-2651333
Gram_Stain:Gram_Pos 9.286e-1080150
Habitat:Multiple 0.000435642178
Habitat:Specialized 0.00011673053
Motility:No 1.464e-980151
Motility:Yes 3.791e-663267
Optimal_temp.:- 0.000020262257
Optimal_temp.:30-35 0.005739167
Optimal_temp.:37 0.000604049106
Oxygen_Req:Aerobic 0.001314346185
Oxygen_Req:Anaerobic 2.426e-858102
Pathogenic_in:Swine 0.003739755
Salinity:Non-halophilic 0.001183748106
Shape:Coccus 0.00010334282
Shape:Irregular_coccus 3.848e-91717
Shape:Rod 1.660e-1079347
Shape:Sphere 3.929e-61619
Temp._range:Hyperthermophilic 6.651e-82023
Temp._range:Mesophilic 0.0004237141473
Temp._range:Thermophilic 0.00013282235



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ORGANISMS ENRICHED FOR GROUP:




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ORGANISMS DEPLETED FOR GROUP:




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PHYLOGENETIC PROFILE SIMILARITY WITH KNOWN PATHWAYS:

Pathways or complexes with absolute value of Pearson coefficient with respect to candidate larger than 0.4 are listed below
The candidate is assumed to exist in orgs listed in section List of organisms containing most genes from the group


Pathway or complex  # Orgs containing it  # of those orgs also containing candidate  Pearson Coeff  
PWY0-1241 (ADP-L-glycero-β-D-manno-heptose biosynthesis)2181340.6946
AST-PWY (arginine degradation II (AST pathway))120950.6706
COBALSYN-PWY (adenosylcobalamin salvage from cobinamide I)1951170.6152
LIPA-CORESYN-PWY (Lipid A-core biosynthesis)1761090.6011
ECASYN-PWY (enterobacterial common antigen biosynthesis)1911120.5843
GLYCOCAT-PWY (glycogen degradation I)2461270.5734
PWY-5755 (4-hydroxybenzoate biosynthesis II (bacteria and fungi))81660.5523
GLUCARDEG-PWY (D-glucarate degradation I)152950.5520
PWY-5918 (heme biosynthesis I)2721300.5436
GALACTITOLCAT-PWY (galactitol degradation)73610.5388
PWY-5111 (CMP-KDO biosynthesis II (from D-arabinose 5-phosphate))3001350.5303
HEME-BIOSYNTHESIS-II (heme biosynthesis from uroporphyrinogen-III I)2861300.5170
PWY-4041 (γ-glutamyl cycle)2791280.5146
KDO-LIPASYN-PWY (KDO2-lipid A biosynthesis I)2251120.5002
3-HYDROXYPHENYLACETATE-DEGRADATION-PWY (4-hydroxyphenylacetate degradation)149880.4983
GLUCARGALACTSUPER-PWY (superpathway of D-glucarate and D-galactarate degradation)135830.4982
PWY-5913 (TCA cycle variation IV)3011310.4976
PWY-5857 (ubiquinone-10 biosynthesis (prokaryotic))183990.4962
PWY-1269 (CMP-KDO biosynthesis I)3251360.4953
GALACTARDEG-PWY (D-galactarate degradation I)151870.4831
LIPASYN-PWY (phospholipases)2121060.4817
GLUTATHIONESYN-PWY (glutathione biosynthesis)3391370.4805
PWY-5148 (acyl-CoA hydrolysis)2271100.4796
PWY-5855 (ubiquinone-7 biosynthesis (prokaryotic))191990.4753
GLUCONSUPER-PWY (D-gluconate degradation)2291100.4752
PWY-5386 (methylglyoxal degradation I)3051290.4751
PHOSLIPSYN-PWY (phospholipid biosynthesis I)2901250.4709
PWY4FS-7 (phosphatidylglycerol biosynthesis I (plastidic))2911250.4690
PWY0-1319 (CDP-diacylglycerol biosynthesis II)2961260.4678
ENTNER-DOUDOROFF-PWY (Entner-Doudoroff pathway I)2491140.4644
GLYCOLYSIS-E-D (superpathway of glycolysis and Entner-Doudoroff)2491140.4644
NAGLIPASYN-PWY (lipid IVA biosynthesis)3481360.4586
PWY-6196 (serine racemization)102660.4534
PWY0-981 (taurine degradation IV)106670.4477
TYRFUMCAT-PWY (tyrosine degradation I)184930.4427
PWY0-901 (selenocysteine biosynthesis I (bacteria))2301060.4410
P344-PWY (acrylonitrile degradation)2101000.4373
PWY-5856 (ubiquinone-9 biosynthesis (prokaryotic))2551120.4364
PWY-6193 (3-chlorocatechol degradation II (ortho))194950.4343
4AMINOBUTMETAB-PWY (superpathway of 4-aminobutyrate degradation)2121000.4327
DAPLYSINESYN-PWY (lysine biosynthesis I)3421310.4291
PWY-46 (putrescine biosynthesis III)138760.4229
PWY0-1182 (trehalose degradation II (trehalase))70500.4222
PWY0-541 (cyclopropane fatty acid (CFA) biosynthesis)3001210.4220
PWY-561 (superpathway of glyoxylate cycle)162830.4152
GLYCOLATEMET-PWY (glycolate and glyoxylate degradation I)2701130.4149
PWY0-1335 (NADH to cytochrome bo oxidase electron transfer)112660.4146
GDPRHAMSYN-PWY (GDP-D-rhamnose biosynthesis)156810.4144
LPSSYN-PWY (superpathway of lipopolysaccharide biosynthesis)91580.4142
GLYOXYLATE-BYPASS (glyoxylate cycle)169850.4135
CHOLINE-BETAINE-ANA-PWY (choline degradation I)135730.4043
BETSYN-PWY (glycine betaine biosynthesis I (Gram-negative bacteria))138740.4043
PWY-3162 (tryptophan degradation V (side chain pathway))94580.4015



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PAIRWISE GENOME CONTEXT SCORE MATRIX:

  G6099   EG11650   EG10860   EG10246   EG10243   
G61000.9998120.9988270.9997930.9997440.999685
G60990.9988680.9996840.999790.999644
EG116500.9985740.9989740.998639
EG108600.9996340.999776
EG102460.999593
EG10243



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PAIRWISE BLAST SCORES:

  G6100   G6099   EG11650   EG10860   EG10246   EG10243   
G61000.0f0-----
G6099-0.0f0----
EG11650--0.0f0---
EG10860---0.0f0--
EG10246----0.0f0-
EG10243-----0.0f0



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PATHWAYS OR PROTEIN COMPLEX MATCHES IN TARGET ORG:

For each case, all genes involved in the pathway or complex are listed. For each gene we list: a tag indicating whether the gene is part of the candidate list or not, the average and the minimum scores of the gene to the candidate list, the gene name, and its product names.



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GENOME CONTEXT INFORMATION:

Each row corresponds to a replicon in an organism, each column to a gene in the candidate. The second column indicates whether the organims was included in the list used to compute the genome context scores or not. Some organisms are not included because they are phylogenetically too similar to others already in the list.
The number in the matrix indicate the position of the homolog of the gene in the replicon. All numbers are relative to the smaller one, which is assigned a position of zero. Two columns with the same number indicate that the two genes matched the same gene in that organism.

Genome browser links for gene clusters

The links below opens a genome browser BioCyc page for each cluster of genes in the target genome. These pages shows the central gene of the cluster in the target genome and its best homolog in the reference genomes, for the genomes that contain homologs for at least 75% of the genes in the group. Only one genome per phylogenetic cluster of organisms is shown, to keep the list smaller.

EG10243 EG10246 EG10860 EG11650 G6099 G6100 (centered at G6100)


ORG:REPLICON:CIRC?\GENE  IN REF LIST  G6100   G6099   EG11650   EG10860   EG10246   EG10243   
143/623352/62384/623394/623290/623348/623
AAEO224324:0:Tyes-503--0-
AAUR290340:2:Tyes-1288-0679-
AAVE397945:0:Tyes200199-2011980
ABAC204669:0:Tyes----0-
ABAU360910:0:Tyes45-360
ABOR393595:0:Tyes21-304
ABUT367737:0:Tyes---5130-
ACAU438753:0:Tyes-221-1477-0
ACRY349163:8:Tyes-127-0-1125
ADEH290397:0:Tyes-0-921823-
AEHR187272:0:Tyes23-140
AFER243159:0:Tyes-24-22021
AHYD196024:0:Tyes320415
ALAI441768:0:Tyes-0----
AMAR234826:0:Tyes---0-365
AMAR329726:5:Tyes--0---
AMAR329726:9:Tyes-1103-0--
AMET293826:0:Tyes-0----
ANAE240017:0:Tyes---0--
AORE350688:0:Tyes-----0
APHA212042:0:Tyes---0-587
APLE416269:0:Tyes-0-8-871
APLE434271:0:Tno-0-7-847
ASAL382245:5:Tyes235140
ASP1667:3:Tyes-2960-07833215
ASP232721:2:Tyes21-30381
ASP62928:0:Tyes23-160
ASP62977:0:Tyes-1227-010
ASP76114:2:Tyes23-140
AVAR240292:3:Tyes-03561192--
BABO262698:1:Tno-1365-0-1493
BAMB339670:3:Tno23-140
BAMB398577:3:Tno23-140
BAMY326423:0:Tyes-0--227365
BANT260799:0:Tno----060
BANT261594:2:Tno----057
BANT568206:2:Tyes----610
BANT592021:2:Tno----060
BAPH198804:0:Tyes-0-1-2
BAPH372461:0:Tyes-----0
BBAC264462:0:Tyes-100554018670-
BBAC360095:0:Tyes-925-385-0
BBRO257310:0:Tyes45-360
BCAN483179:1:Tno-1448-0-1582
BCEN331271:2:Tno23-140
BCEN331272:3:Tyes23-140
BCER226900:1:Tyes-----0
BCER288681:0:Tno----062
BCER315749:1:Tyes----0574
BCER405917:1:Tyes-----0
BCER572264:1:Tno----056
BCIC186490:0:Tyes-231-0
BCLA66692:0:Tyes-438---0
BFRA272559:1:Tyes----0-
BFRA295405:0:Tno----0-
BHAL272558:0:Tyes-----0
BHEN283166:0:Tyes-1530-411-0
BJAP224911:0:Fyes-0-1105-423
BLIC279010:0:Tyes-752--3220
BLON206672:0:Tyes---0--
BMAL243160:1:Tno23-140
BMAL320388:1:Tno23-140
BMAL320389:1:Tyes23-140
BMEL224914:1:Tno-0-1366-1970
BMEL359391:1:Tno-1317-0-1442
BOVI236:1:Tyes-1234-0-1346
BPAR257311:0:Tno45-360
BPER257313:0:Tyes25332534-253225350
BPET94624:0:Tyes-1-205
BPSE272560:1:Tyes23-140
BPSE320372:1:Tno23-150
BPSE320373:1:Tno23-140
BPUM315750:0:Tyes-642--2830
BQUI283165:0:Tyes-1180-318-0
BSP107806:2:Tyes-0---1
BSP36773:2:Tyes23-140
BSP376:0:Tyes-335-6049-0
BSUB:0:Tyes-0--226559
BSUI204722:1:Tyes-1408-0-1540
BSUI470137:1:Tno-1232-0-1365
BTHA271848:1:Tno21-304
BTHE226186:0:Tyes----0-
BTHU281309:1:Tno----056
BTHU412694:1:Tno----057
BTRI382640:1:Tyes-2123-581-0
BTUR314724:0:Fyes----0-
BVIE269482:7:Tyes23-140
BWEI315730:4:Tyes-----0
CACE272562:1:Tyes-0--424-
CAULO:0:Tyes-517-3406-0
CBEI290402:0:Tyes-342-21120-
CBLO203907:0:Tyes-0-1-2
CBLO291272:0:Tno-0-1-2
CBOT36826:1:Tno-2627-02580-
CBOT441770:0:Tyes-2607-02559-
CBOT441771:0:Tno-2466-02420-
CBOT441772:1:Tno---02522-
CBOT498213:1:Tno---02588-
CBOT508765:1:Tyes-0--1596-
CBOT515621:2:Tyes-2806-027562146
CBOT536232:0:Tno-2886-02834-
CBUR227377:1:Tyes21-304
CBUR360115:1:Tno32-405
CBUR434922:2:Tno23-150
CCHL340177:0:Tyes---3660-
CCON360104:2:Tyes---01019-
CCUR360105:0:Tyes---13990-
CDES477974:0:Tyes-0-937513-
CDIF272563:1:Tyes-350---0
CFET360106:0:Tyes---5320-
CGLU196627:0:Tyes-0----
CHOM360107:1:Tyes---12740-
CHUT269798:0:Tyes---263901630
CHYD246194:0:Tyes-1509--01330
CJAP155077:0:Tyes24-150
CJEI306537:0:Tyes-----0
CJEJ192222:0:Tyes---9600-
CJEJ195099:0:Tno---10190-
CJEJ354242:2:Tyes---9250-
CJEJ360109:0:Tyes---6020-
CJEJ407148:0:Tno---9570-
CKLU431943:1:Tyes-0----
CKOR374847:0:Tyes-0----
CMIC31964:2:Tyes---01184-
CMIC443906:2:Tyes---01029-
CNOV386415:0:Tyes-0----
CPEL335992:0:Tyes-90-0-213
CPER195102:1:Tyes-0--57-
CPER195103:0:Tno-0--56-
CPER289380:3:Tyes-0--57-
CPHY357809:0:Tyes---0-237
CPSY167879:0:Tyes21--0253
CRUT413404:0:Tyes-0-4239968
CSAL290398:0:Tyes23-140
CSP501479:7:Fyes-193---0
CSP501479:8:Fyes---0--
CSP78:2:Tyes-0-4050-4669
CTEP194439:0:Tyes-1048-6210-
CTET212717:0:Tyes-0----
CVES412965:0:Tyes-0-42-62
CVIO243365:0:Tyes21-304
DARO159087:0:Tyes280281-2790278
DDES207559:0:Tyes---0656-
DETH243164:0:Tyes-0----
DGEO319795:1:Tyes---2740124
DHAF138119:0:Tyes-0----
DNOD246195:0:Tyes-84-188-0
DOLE96561:0:Tyes-0-2736681-
DPSY177439:2:Tyes--15920789-
DRAD243230:3:Tyes---42-0
DRED349161:0:Tyes---4968470
DSHI398580:5:Tyes-2547-0-3308
DSP216389:0:Tyes-0----
DSP255470:0:Tno-0----
DVUL882:1:Tyes---6450-
ECAN269484:0:Tyes---257-0
ECAR218491:0:Tyes235140
ECHA205920:0:Tyes---0--
ECOL199310:0:Tno430526
ECOL316407:0:Tno430526
ECOL331111:6:Tno430627
ECOL362663:0:Tno430526
ECOL364106:1:Tno430526
ECOL405955:2:Tyes430526
ECOL409438:6:Tyes430526
ECOL413997:0:Tno430526
ECOL439855:4:Tno430526
ECOL469008:0:Tno236140
ECOL481805:0:Tno236140
ECOL585034:0:Tno430526
ECOL585035:0:Tno430526
ECOL585055:0:Tno430526
ECOL585056:2:Tno430526
ECOL585057:0:Tno236140
ECOL585397:0:Tno430526
ECOL83334:0:Tno430526
ECOLI:0:Tno430526
ECOO157:0:Tno430526
EFAE226185:3:Tyes----0-
EFER585054:1:Tyes430526
ELIT314225:0:Tyes-1213-0-2320
ERUM254945:0:Tyes---247-0
ERUM302409:0:Tno---248-0
ESP42895:1:Tyes430526
FALN326424:0:Tyes-0-1843--
FJOH376686:0:Tyes---16101532
FMAG334413:1:Tyes-77---0
FNUC190304:0:Tyes-----0
FPHI484022:1:Tyes-4770693-805
FRANT:0:Tno-806112538-0
FSP106370:0:Tyes-0----
FSP1855:0:Tyes-0----
FSUC59374:0:Tyes----0-
FTUL351581:0:Tno-5190684-816
FTUL393011:0:Tno-4830638-749
FTUL393115:0:Tyes-792110438-0
FTUL401614:0:Tyes-399776119-0
FTUL418136:0:Tno-3830954-830
FTUL458234:0:Tno-5120678-797
GBET391165:0:Tyes-0-1424-1689
GFOR411154:0:Tyes---147513880
GKAU235909:1:Tyes-----0
GMET269799:1:Tyes---016242122
GOXY290633:5:Tyes-100-0-1770
GSUL243231:0:Tyes---10550-
GTHE420246:1:Tyes-----0
GURA351605:0:Tyes-249-01142-
GVIO251221:0:Tyes-0747277--
HACI382638:1:Tyes---0773-
HARS204773:0:Tyes23-140
HAUR316274:2:Tyes-2718-3732-0
HCHE349521:0:Tyes21-304
HDUC233412:0:Tyes-863-871-0
HHAL349124:0:Tyes-1330-132813310
HHEP235279:0:Tyes---0641-
HINF281310:0:Tyes-1495-1-0
HINF374930:0:Tyes-201-0-1
HINF71421:0:Tno-1110-1-0
HMAR272569:8:Tyes-0----
HMOD498761:0:Tyes-1457-2443-0
HNEP81032:0:Tyes-3348-933-0
HPY:0:Tno---0920-
HPYL357544:1:Tyes---0899-
HPYL85963:0:Tno---0866-
HSOM205914:1:Tyes203204-1-0
HSOM228400:0:Tno318319-1-0
ILOI283942:0:Tyes34-150
JSP290400:1:Tyes-855-312-0
JSP375286:0:Tyes21-304
KPNE272620:2:Tyes430526
KRAD266940:2:Fyes----0-
LACI272621:0:Tyes---0--
LBIF355278:2:Tyes-0----
LBIF456481:2:Tno-0----
LBOR355276:1:Tyes-0----
LBOR355277:1:Tno-0----
LBRE387344:2:Tyes---0--
LCAS321967:1:Tyes---0--
LCHO395495:0:Tyes945946-9449470
LDEL321956:0:Tyes---0--
LDEL390333:0:Tyes---0--
LGAS324831:0:Tyes---0--
LHEL405566:0:Tyes---0--
LINN272626:1:Tno----0-
LINT189518:1:Tyes-0----
LINT363253:3:Tyes---6980-
LJOH257314:0:Tyes---0--
LLAC272622:5:Tyes----0494
LLAC272623:0:Tyes----0441
LMON169963:0:Tno----0-
LMON265669:0:Tyes----0-
LPLA220668:0:Tyes---0--
LPNE272624:0:Tno-1-89090
LPNE297245:1:Fno-1-78079
LPNE297246:1:Fyes-1-82083
LPNE400673:0:Tno-1-80081
LREU557436:0:Tyes---510-
LSAK314315:0:Tyes----0-
LSPH444177:1:Tyes----0-
LWEL386043:0:Tyes----0-
LXYL281090:0:Tyes---0--
MABS561007:1:Tyes-2788---0
MAER449447:0:Tyes-0----
MAQU351348:2:Tyes23-140
MAVI243243:0:Tyes-0----
MBOV233413:0:Tno-0----
MBOV410289:0:Tno-0----
MCAP243233:0:Tyes15880-3551587356
MEXT419610:0:Tyes-1593-0-567
MFLA265072:0:Tyes23-140
MGIL350054:3:Tyes-941-0-1136
MLEP272631:0:Tyes-0----
MLOT266835:2:Tyes-0-3191-730
MMAG342108:0:Tyes-3430-0-3783
MMAR394221:0:Tyes-164-0-750
MPET420662:1:Tyes272273-2712740
MSME246196:0:Tyes-0-4188-4894
MSP164756:1:Tno-0-979-1537
MSP164757:0:Tno-0-1340-1884
MSP189918:2:Tyes-0-1005-1564
MSP266779:3:Tyes-2345-0-2751
MSP400668:0:Tyes3603590361358362
MSP409:2:Tyes-966-4056-0
MSUC221988:0:Tyes73740715-714
MTBCDC:0:Tno-0----
MTBRV:0:Tno-0----
MTHE264732:0:Tyes---0--
MTUB336982:0:Tno-0----
MTUB419947:0:Tyes-0----
MVAN350058:0:Tyes-0-1143-1758
MXAN246197:0:Tyes-220-03310-
NARO279238:0:Tyes-1220-98221260
NEUR228410:0:Tyes10-223193
NEUT335283:2:Tyes23-12820
NFAR247156:2:Tyes---0--
NGON242231:0:Tyes-511-4920323
NHAM323097:2:Tyes-346-3510-0
NMEN122586:0:Tno-673-3080206
NMEN122587:0:Tyes-0-12899771180
NMEN272831:0:Tno-640-2590174
NMEN374833:0:Tno-0-13039901196
NMUL323848:3:Tyes10961097-109501094
NOCE323261:1:Tyes10600-105912311058
NPHA348780:2:Tyes-0----
NSEN222891:0:Tyes---190-0
NSP103690:6:Tyes-44441220--
NSP35761:1:Tyes-3228-0-3388
NSP387092:0:Tyes---0584-
NWIN323098:0:Tyes-273-2612-0
OANT439375:5:Tyes-324-0-250
OCAR504832:0:Tyes-0-3225-286
OIHE221109:0:Tyes----13210
OTSU357244:0:Fyes---189-0
PACN267747:0:Tyes---0--
PAER208963:0:Tyes23-140
PAER208964:0:Tno21-304
PARC259536:0:Tyes-209-04420
PATL342610:0:Tyes4294280901427900
PCAR338963:0:Tyes-2898-018602434
PCRY335284:1:Tyes-575-02570
PDIS435591:0:Tyes----0-
PENT384676:0:Tyes23-140
PFLU205922:0:Tyes21-304
PFLU216595:1:Tyes21-304
PFLU220664:0:Tyes45-360
PGIN242619:0:Tyes----0-
PHAL326442:1:Tyes23853140
PING357804:0:Tyes232668140
PINT246198:0:Tyes-0----
PINT246198:1:Tyes----0-
PLUM243265:0:Fyes2422410243240244
PLUT319225:0:Tyes-803-4250-
PMAR146891:0:Tyes-396-0--
PMAR167539:0:Tyes-349-0--
PMAR167540:0:Tyes-372-0--
PMAR167542:0:Tyes-412-0--
PMAR167546:0:Tyes-366-0--
PMAR167555:0:Tyes-350-0--
PMAR59920:0:Tno-333-0--
PMAR74546:0:Tyes-367-0--
PMAR74547:0:Tyes-0-924--
PMAR93060:0:Tyes-433-0--
PMEN399739:0:Tyes21-304
PMUL272843:1:Tyes580579-1-0
PNAP365044:8:Tyes21-30614
PPEN278197:0:Tyes---0--
PPRO298386:2:Tyes236140
PPUT160488:0:Tno23-140
PPUT351746:0:Tyes21-304
PPUT76869:0:Tno23-140
PRUM264731:0:Tyes----0-
PSP117:0:Tyes---0--
PSP296591:2:Tyes2210-222220127
PSP312153:0:Tyes21-306
PSP56811:2:Tyes-0--176-
PSTU379731:0:Tyes23-140
PSYR205918:0:Tyes21-304
PSYR223283:2:Tyes23-140
PTHE370438:0:Tyes----0-
RAKA293614:0:Fyes---4-0
RALB246199:0:Tyes---0--
RBEL336407:0:Tyes---5-0
RBEL391896:0:Fno-----0
RCAN293613:0:Fyes---4-0
RCAS383372:0:Tyes---0--
RCON272944:0:Tno---0-5
RDEN375451:4:Tyes-2900-847-0
RETL347834:5:Tyes-3768-948-0
REUT264198:3:Tyes-1-203
REUT381666:2:Tyes21-304
RFEL315456:2:Tyes---5-0
RFER338969:1:Tyes21-30722
RLEG216596:6:Tyes-4358-1049-0
RMAS416276:1:Tyes---0-5
RMET266264:2:Tyes21-304
RPAL258594:0:Tyes-313-3993-0
RPAL316055:0:Tyes-0-3929-211
RPAL316056:0:Tyes-213-3778-0
RPAL316057:0:Tyes-0-3973-335
RPAL316058:0:Tyes-0-1289-334
RPOM246200:1:Tyes-0-44-706
RPRO272947:0:Tyes---0-4
RRIC392021:0:Fno---0-4
RRIC452659:0:Tyes---0-4
RRUB269796:1:Tyes-216-0-556
RSAL288705:0:Tyes---02024-
RSOL267608:1:Tyes12-03369
RSP101510:3:Fyes-312-0--
RSP357808:0:Tyes---0--
RSPH272943:4:Tyes-0-1626-1997
RSPH349101:2:Tno-0-1571-1945
RSPH349102:5:Tyes-2031-0-2495
RTYP257363:0:Tno---0-5
RXYL266117:0:Tyes-0---1846
SACI56780:0:Tyes-0-23871198-
SALA317655:1:Tyes-0-452-2180
SAUR158878:1:Tno----0602
SAUR158879:1:Tno----0729
SAUR196620:0:Tno----0753
SAUR273036:0:Tno----0707
SAUR282458:0:Tno----0764
SAUR282459:0:Tno----0802
SAUR359786:1:Tno----0855
SAUR359787:1:Tno----0844
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