CANDIDATE ID: 464

CANDIDATE ID: 464

NUMBER OF GENES: 6
AVERAGE SCORE:    9.9964567e-1 (range=[0.0,1.0])
AVERAGE MINIMUM BLAST P-VAL:    8.3333333e-1

Gene List
List of organisms containing most genes from the group
    Phylogenetic tree highlighting these organisms (opens new page)
List of organisms containing very few or no genes from the group
List of organisms enriched for group
List of organisms depleted for group
Phylogenetic profile similarity with known pathways
Pairwise genome context scores
Pairwise Blast scores
Pathway or protein complex matches in target organism
Genome context matrix
    Genes and their orthologs in genome browser BioCyc pages




GENE LIST:

- G6357 (hscC) (b0650)
   Products of gene:
     - G6357-MONOMER (Hsc62, Hsp70 family chaperone, binds to RpoD and inhibits transcription)

- EG12200 (yegD) (b2069)
   Products of gene:
     - EG12200-MONOMER (actin family protein)

- EG12193 (cbpA) (b1000)
   Products of gene:
     - EG12193-MONOMER (CbpA monomer)
     - CPLX0-2802 (chaperone with DnaK; curved DNA-binding protein)

- EG10416 (grpE) (b2614)
   Products of gene:
     - EG10416-MONOMER (phage lambda replication; host DNA synthesis; heat shock protein; protein repair)
     - HSP70-CPLX (DnaJ/DnaK/GrpE)

- EG10241 (dnaK) (b0014)
   Products of gene:
     - EG10241-MONOMER (chaperone Hsp70; DNA biosynthesis; autoregulated heat shock proteins)
     - HSP70-CPLX (DnaJ/DnaK/GrpE)

- EG10240 (dnaJ) (b0015)
   Products of gene:
     - EG10240-MONOMER (chaperone with DnaK; heat shock protein)
     - HSP70-CPLX (DnaJ/DnaK/GrpE)



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ORGANISMS CONTAINING AT LEAST 5 GENES FROM THE GROUP:

Total number of orgs: 234
Effective number of orgs (counting one per cluster within 468 clusters): 149

Organism list
Homologs in each organism in the list
Features enriched in organism list


Follow (ncbi) link, when present, to find the set of organism features for each organism
Org ID  Org Name  # genes in group found in org  
ZMOB264203 ncbi Zymomonas mobilis mobilis ZM45
YPSE349747 ncbi Yersinia pseudotuberculosis IP 317585
YPSE273123 ncbi Yersinia pseudotuberculosis IP 329535
YPES386656 ncbi Yersinia pestis Pestoides F5
YPES377628 ncbi Yersinia pestis Nepal5165
YPES360102 ncbi Yersinia pestis Antiqua5
YPES349746 ncbi Yersinia pestis Angola5
YPES214092 ncbi Yersinia pestis CO925
YPES187410 ncbi Yersinia pestis KIM 105
YENT393305 ncbi Yersinia enterocolitica enterocolitica 80815
XORY360094 ncbi Xanthomonas oryzae pv. oryzae PXO99A5
XORY342109 ncbi Xanthomonas oryzae pv. oryzae MAFF 3110185
XORY291331 ncbi Xanthomonas oryzae pv. oryzae KACC103315
XCAM487884 Xanthomonas campestris pv. paulliniae5
XCAM316273 ncbi Xanthomonas campestris pv. vesicatoria str. 85-105
XCAM314565 ncbi Xanthomonas campestris pv. campestris str. 80045
XCAM190485 ncbi Xanthomonas campestris pv. campestris str. ATCC 339135
VVUL216895 ncbi Vibrio vulnificus CMCP66
VVUL196600 ncbi Vibrio vulnificus YJ0166
VPAR223926 ncbi Vibrio parahaemolyticus RIMD 22106336
VFIS312309 ncbi Vibrio fischeri ES1145
VCHO345073 ncbi Vibrio cholerae O3955
VCHO ncbi Vibrio cholerae O1 biovar El Tor str. N169615
TTUR377629 ncbi Teredinibacter turnerae T79015
TSP1755 Thermoanaerobacter sp.5
TPSE340099 ncbi Thermoanaerobacter pseudethanolicus ATCC 332235
SWOL335541 ncbi Syntrophomonas wolfei wolfei Goettingen5
STYP99287 ncbi Salmonella enterica enterica serovar Typhimurium str. LT26
STHE322159 ncbi Streptococcus thermophilus LMD-95
STHE299768 ncbi Streptococcus thermophilus CNRZ10665
STHE264199 ncbi Streptococcus thermophilus LMG 183115
SSP94122 ncbi Shewanella sp. ANA-35
SSP644076 Silicibacter sp. TrichCH4B5
SSP321332 ncbi Synechococcus sp. JA-2-3Ba(2-13)5
SSP321327 ncbi Synechococcus sp. JA-3-3Ab5
SSP292414 ncbi Ruegeria sp. TM10405
SSON300269 ncbi Shigella sonnei Ss0466
SSED425104 ncbi Shewanella sediminis HAW-EB35
SPYO370554 ncbi Streptococcus pyogenes MGAS107505
SPYO319701 ncbi Streptococcus pyogenes MGAS61805
SPYO293653 ncbi Streptococcus pyogenes MGAS50055
SPYO286636 ncbi Streptococcus pyogenes MGAS103945
SPRO399741 ncbi Serratia proteamaculans 5686
SPEA398579 ncbi Shewanella pealeana ATCC 7003455
SONE211586 ncbi Shewanella oneidensis MR-15
SMEL266834 ncbi Sinorhizobium meliloti 10215
SMED366394 ncbi Sinorhizobium medicae WSM4195
SLOI323850 ncbi Shewanella loihica PV-45
SHAL458817 ncbi Shewanella halifaxensis HAW-EB45
SHAE279808 ncbi Staphylococcus haemolyticus JCSC14355
SFLE373384 ncbi Shigella flexneri 5 str. 84016
SENT454169 ncbi Salmonella enterica enterica serovar Heidelberg str. SL4766
SENT321314 ncbi Salmonella enterica enterica serovar Choleraesuis str. SC-B676
SENT295319 ncbi Salmonella enterica enterica serovar Paratyphi A str. ATCC 91506
SENT220341 ncbi Salmonella enterica enterica serovar Typhi str. CT186
SENT209261 ncbi Salmonella enterica enterica serovar Typhi str. Ty26
SDYS300267 ncbi Shigella dysenteriae Sd1975
SDEN318161 ncbi Shewanella denitrificans OS2175
SBOY300268 ncbi Shigella boydii Sb2276
SBAL402882 ncbi Shewanella baltica OS1855
SBAL399599 ncbi Shewanella baltica OS1955
SAUR93062 ncbi Staphylococcus aureus aureus COL5
SAUR93061 ncbi Staphylococcus aureus aureus NCTC 83255
SAUR426430 ncbi Staphylococcus aureus aureus Newman5
SAUR418127 ncbi Staphylococcus aureus aureus Mu35
SAUR367830 Staphylococcus aureus aureus USA3005
SAUR359787 ncbi Staphylococcus aureus aureus JH15
SAUR359786 ncbi Staphylococcus aureus aureus JH95
SAUR282459 ncbi Staphylococcus aureus aureus MSSA4765
SAUR282458 ncbi Staphylococcus aureus aureus MRSA2525
SAUR196620 ncbi Staphylococcus aureus aureus MW25
SAUR158879 ncbi Staphylococcus aureus aureus N3155
SAUR158878 ncbi Staphylococcus aureus aureus Mu505
RTYP257363 ncbi Rickettsia typhi Wilmington6
RSPH349102 ncbi Rhodobacter sphaeroides ATCC 170255
RSPH349101 ncbi Rhodobacter sphaeroides ATCC 170295
RSPH272943 ncbi Rhodobacter sphaeroides 2.4.15
RSP357808 ncbi Roseiflexus sp. RS-15
RSOL267608 ncbi Ralstonia solanacearum GMI10006
RPRO272947 ncbi Rickettsia prowazekii Madrid E6
RPOM246200 ncbi Ruegeria pomeroyi DSS-35
RPAL316056 ncbi Rhodopseudomonas palustris BisB185
RPAL316055 ncbi Rhodopseudomonas palustris BisA535
RMET266264 ncbi Ralstonia metallidurans CH345
RLEG216596 ncbi Rhizobium leguminosarum bv. viciae 38415
RFER338969 ncbi Rhodoferax ferrireducens T1186
REUT381666 ncbi Ralstonia eutropha H165
REUT264198 ncbi Ralstonia eutropha JMP1345
RETL347834 ncbi Rhizobium etli CFN 425
RBEL336407 ncbi Rickettsia bellii RML369-C5
RAKA293614 ncbi Rickettsia akari Hartford5
PTHE370438 ncbi Pelotomaculum thermopropionicum SI5
PSYR223283 ncbi Pseudomonas syringae pv. tomato str. DC30006
PSYR205918 ncbi Pseudomonas syringae pv. syringae B728a6
PSTU379731 ncbi Pseudomonas stutzeri A15015
PSP296591 ncbi Polaromonas sp. JS6666
PSP117 Pirellula sp.5
PPUT76869 ncbi Pseudomonas putida GB-15
PPUT351746 ncbi Pseudomonas putida F15
PPUT160488 ncbi Pseudomonas putida KT24405
PPRO298386 ncbi Photobacterium profundum SS95
PNAP365044 ncbi Polaromonas naphthalenivorans CJ25
PMUL272843 ncbi Pasteurella multocida multocida Pm705
PMEN399739 ncbi Pseudomonas mendocina ymp5
PING357804 ncbi Psychromonas ingrahamii 375
PHAL326442 ncbi Pseudoalteromonas haloplanktis TAC1256
PFLU220664 ncbi Pseudomonas fluorescens Pf-56
PFLU216595 ncbi Pseudomonas fluorescens SBW256
PFLU205922 ncbi Pseudomonas fluorescens Pf0-16
PENT384676 ncbi Pseudomonas entomophila L486
PATL342610 ncbi Pseudoalteromonas atlantica T6c5
PAER208964 ncbi Pseudomonas aeruginosa PAO16
PAER208963 ncbi Pseudomonas aeruginosa UCBPP-PA146
OANT439375 ncbi Ochrobactrum anthropi ATCC 491885
NHAM323097 ncbi Nitrobacter hamburgensis X145
NEUT335283 ncbi Nitrosomonas eutropha C915
NEUR228410 ncbi Nitrosomonas europaea ATCC 197185
MXAN246197 ncbi Myxococcus xanthus DK 16225
MTHE349307 ncbi Methanosaeta thermophila PT5
MSUC221988 ncbi Mannheimia succiniciproducens MBEL55E6
MSP409 Methylobacterium sp.5
MSP400668 ncbi Marinomonas sp. MWYL16
MMAG342108 ncbi Magnetospirillum magneticum AMB-15
MFLA265072 ncbi Methylobacillus flagellatus KT5
MCAP243233 ncbi Methylococcus capsulatus Bath5
MAQU351348 ncbi Marinobacter aquaeolei VT85
LSPH444177 ncbi Lysinibacillus sphaericus C3-415
LSAK314315 ncbi Lactobacillus sakei sakei 23K5
LINT363253 ncbi Lawsonia intracellularis PHE/MN1-005
LCHO395495 ncbi Leptothrix cholodnii SP-65
KPNE272620 ncbi Klebsiella pneumoniae pneumoniae MGH 785786
JSP375286 ncbi Janthinobacterium sp. Marseille5
HNEP81032 Hyphomonas neptunium6
HHAL349124 ncbi Halorhodospira halophila SL15
HDUC233412 ncbi Haemophilus ducreyi 35000HP5
HCHE349521 ncbi Hahella chejuensis KCTC 23966
HARS204773 ncbi Herminiimonas arsenicoxydans5
GURA351605 ncbi Geobacter uraniireducens Rf45
GTHE420246 ncbi Geobacillus thermodenitrificans NG80-25
GKAU235909 ncbi Geobacillus kaustophilus HTA4265
FTUL458234 ncbi Francisella tularensis holarctica FTNF002-005
FTUL418136 ncbi Francisella tularensis tularensis WY96-34185
FTUL401614 ncbi Francisella novicida U1125
FTUL393115 ncbi Francisella tularensis tularensis FSC1985
FTUL393011 ncbi Francisella tularensis holarctica OSU185
FTUL351581 Francisella tularensis holarctica FSC2005
FRANT ncbi Francisella tularensis tularensis SCHU S45
FPHI484022 ncbi Francisella philomiragia philomiragia ATCC 250175
EFER585054 ncbi Escherichia fergusonii ATCC 354696
EFAE226185 ncbi Enterococcus faecalis V5835
ECOO157 ncbi Escherichia coli O157:H7 EDL9336
ECOL83334 Escherichia coli O157:H76
ECOL585397 ncbi Escherichia coli ED1a5
ECOL585057 ncbi Escherichia coli IAI395
ECOL585056 ncbi Escherichia coli UMN0266
ECOL585055 ncbi Escherichia coli 559895
ECOL585035 ncbi Escherichia coli S885
ECOL585034 ncbi Escherichia coli IAI16
ECOL481805 ncbi Escherichia coli ATCC 87396
ECOL469008 ncbi Escherichia coli BL21(DE3)6
ECOL439855 ncbi Escherichia coli SMS-3-56
ECOL413997 ncbi Escherichia coli B str. REL6066
ECOL409438 ncbi Escherichia coli SE116
ECOL364106 ncbi Escherichia coli UTI895
ECOL362663 ncbi Escherichia coli 5366
ECOL331111 ncbi Escherichia coli E24377A6
ECOL316407 ncbi Escherichia coli K-12 substr. W31106
ECOL199310 ncbi Escherichia coli CFT0736
ECAR218491 ncbi Pectobacterium atrosepticum SCRI10435
DDES207559 ncbi Desulfovibrio desulfuricans desulfuricans G206
CVIO243365 ncbi Chromobacterium violaceum ATCC 124726
CSP501479 Citreicella sp. SE455
CSAL290398 ncbi Chromohalobacter salexigens DSM 30435
CPSY167879 ncbi Colwellia psychrerythraea 34H6
CPRO264201 ncbi Candidatus Protochlamydia amoebophila UWE255
CKLU431943 ncbi Clostridium kluyveri DSM 5555
CJAP155077 Cellvibrio japonicus6
CHYD246194 ncbi Carboxydothermus hydrogenoformans Z-29015
CDES477974 ncbi Candidatus Desulforudis audaxviator MP104C5
CBUR434922 ncbi Coxiella burnetii Dugway 5J108-1115
CBUR360115 ncbi Coxiella burnetii RSA 3315
CBUR227377 ncbi Coxiella burnetii RSA 4935
CBLO203907 ncbi Candidatus Blochmannia floridanus5
BWEI315730 ncbi Bacillus weihenstephanensis KBAB45
BVIE269482 ncbi Burkholderia vietnamiensis G45
BTHU412694 ncbi Bacillus thuringiensis Al Hakam5
BTHU281309 ncbi Bacillus thuringiensis serovar konkukian str. 97-275
BTHA271848 ncbi Burkholderia thailandensis E2645
BSUI470137 ncbi Brucella suis ATCC 234455
BSUI204722 ncbi Brucella suis 13305
BSUB ncbi Bacillus subtilis subtilis 1685
BSP376 Bradyrhizobium sp.5
BSP36773 Burkholderia sp.5
BPUM315750 ncbi Bacillus pumilus SAFR-0325
BPSE320373 ncbi Burkholderia pseudomallei 6685
BPSE320372 ncbi Burkholderia pseudomallei 1710b5
BPSE272560 ncbi Burkholderia pseudomallei K962435
BOVI236 Brucella ovis5
BMEL359391 ncbi Brucella melitensis biovar Abortus 23085
BMEL224914 ncbi Brucella melitensis bv. 1 str. 16M5
BMAL320389 ncbi Burkholderia mallei NCTC 102475
BMAL320388 ncbi Burkholderia mallei SAVP15
BMAL243160 ncbi Burkholderia mallei ATCC 233445
BJAP224911 ncbi Bradyrhizobium japonicum USDA 1105
BCLA66692 ncbi Bacillus clausii KSM-K165
BCER572264 ncbi Bacillus cereus 03BB1025
BCER405917 Bacillus cereus W5
BCER315749 ncbi Bacillus cytotoxicus NVH 391-985
BCER288681 ncbi Bacillus cereus E33L5
BCER226900 ncbi Bacillus cereus ATCC 145795
BCEN331272 ncbi Burkholderia cenocepacia HI24245
BCEN331271 ncbi Burkholderia cenocepacia AU 10545
BCAN483179 ncbi Brucella canis ATCC 233655
BANT592021 ncbi Bacillus anthracis A02485
BANT568206 ncbi Bacillus anthracis CDC 6845
BANT261594 ncbi Bacillus anthracis Ames Ancestor5
BANT260799 ncbi Bacillus anthracis Sterne5
BAMY326423 ncbi Bacillus amyloliquefaciens FZB425
BAMB398577 ncbi Burkholderia ambifaria MC40-65
BAMB339670 ncbi Burkholderia ambifaria AMMD5
BABO262698 ncbi Brucella abortus bv. 1 str. 9-9415
ASP76114 ncbi Aromatoleum aromaticum EbN15
ASP62977 ncbi Acinetobacter sp. ADP15
ASP62928 ncbi Azoarcus sp. BH725
ASAL382245 ncbi Aeromonas salmonicida salmonicida A4496
APLE434271 ncbi Actinobacillus pleuropneumoniae serovar 3 str. JL035
APLE416269 ncbi Actinobacillus pleuropneumoniae L205
AHYD196024 Aeromonas hydrophila dhakensis5
AEHR187272 ncbi Alkalilimnicola ehrlichii MLHE-15
ADEH290397 ncbi Anaeromyxobacter dehalogenans 2CP-C6
ABOR393595 ncbi Alcanivorax borkumensis SK25
ABAU360910 ncbi Bordetella avium 197N5
ABAC204669 ncbi Candidatus Koribacter versatilis Ellin3456
AAVE397945 ncbi Acidovorax citrulli AAC00-16


Names of the homologs of the genes in the group in each of these orgs
  G6357   EG12200   EG12193   EG10416   EG10241   EG10240   
ZMOB264203 ZMO0660ZMO0661ZMO0016ZMO0660ZMO0661
YPSE349747 YPSIP31758_1223YPSIP31758_3465YPSIP31758_2887YPSIP31758_3466YPSIP31758_3465
YPSE273123 YPTB2806YPTB0612YPTB1141YPTB0611YPTB0612
YPES386656 YPDSF_2190YPDSF_3162YPDSF_2590YPDSF_3163YPDSF_3162
YPES377628 YPN_1298YPN_0342YPN_2891YPN_0341YPN_0342
YPES360102 YPA_2276YPA_4063YPA_0585YPA_4062YPA_4063
YPES349746 YPANGOLA_A3110YPANGOLA_A0796YPANGOLA_A1378YPANGOLA_A0797YPANGOLA_A0796
YPES214092 YPO2840YPO0469YPO1107YPO0468YPO0469
YPES187410 Y1394Y3705Y3073Y3706Y3705
YENT393305 YE1115YE3356YE1000YE0609YE0610
XORY360094 XOOORF_3107XOOORF_4492XOOORF_2972XOOORF_2971XOOORF_2970
XORY342109 XOO1789XOO0835XOO1912XOO1913XOO1914
XORY291331 XOO1892XOO0910XOO2030XOO2031XOO2032
XCAM487884 XCC-B100_2991XCC-B100_3296XCC-B100_2800XCC-B100_2799XCC-B100_2798
XCAM316273 XCAORF_1570XCAORF_1251XCAORF_1736XCAORF_1737XCAORF_1738
XCAM314565 XC_2930XC_3198XC_2764XC_2763XC_2762
XCAM190485 XCC1309XCC1048XCC1473XCC1474XCC1475
VVUL216895 VV1_0434VV2_0020VV1_0354VV1_0365VV1_0357VV1_0354
VVUL196600 VV0759VVA0528VV0833VV0825VV0832VV0833
VPAR223926 VP0600VPA0650VP0654VP0651VP0653VP0654
VFIS312309 VF1207VF1993VF1996VF1467VF1993
VCHO345073 VC0395_A0999VC0395_A0383VC0395_A0381VC0395_A0382VC0395_A0383
VCHO VC1386VC0856VC0854VC0855VC0856
TTUR377629 TERTU_3296TERTU_3296TERTU_3297TERTU_3296TERTU_3295
TSP1755 TETH514_2079TETH514_2079TETH514_2078TETH514_2080TETH514_2078
TPSE340099 TETH39_1393TETH39_1393TETH39_1392TETH39_1394TETH39_1392
SWOL335541 SWOL_1578SWOL_0490SWOL_0491SWOL_1579SWOL_0490
STYP99287 STM0659STM2125STM1112STM2681STM0012STM0013
STHE322159 STER_0163STER_0163STER_0164STER_0162STER_0164
STHE299768 STR0120STR0120STR0121STR0119STR0121
STHE264199 STU0120STU0120STU0121STU0119STU0121
SSP94122 SHEWANA3_2416SHEWANA3_0960SHEWANA3_2902SHEWANA3_0959SHEWANA3_0960
SSP644076 SCH4B_3372SCH4B_4487SCH4B_3198SCH4B_3372SCH4B_3371
SSP321332 CYB_2934CYB_2781CYB_2782CYB_2933CYB_2934
SSP321327 CYA_0787CYA_0130CYA_0132CYA_0971CYA_0787
SSP292414 TM1040_0010TM1040_1020TM1040_2874TM1040_0010TM1040_0009
SSON300269 SSO_0604SSO_2122SSO_1008SSO_2770SSO_0014SSO_0015
SSED425104 SSED_2656SSED_3408SSED_3330SSED_3409SSED_3408
SPYO370554 MGAS10750_SPY1558MGAS10750_SPY1558MGAS10750_SPY1557MGAS10750_SPY1559MGAS10750_SPY1557
SPYO319701 M28_SPY1487M28_SPY1487M28_SPY1486M28_SPY1488M28_SPY1486
SPYO293653 M5005_SPY1498M5005_SPY1498M5005_SPY1497M5005_SPY1499M5005_SPY1497
SPYO286636 M6_SPY1492M6_SPY1492M6_SPY1491M6_SPY1493M6_SPY1491
SPRO399741 SPRO_3623SPRO_3548SPRO_3860SPRO_3684SPRO_0692SPRO_0693
SPEA398579 SPEA_2523SPEA_3079SPEA_2992SPEA_3080SPEA_3079
SONE211586 SO_2189SO_1127SO_1524SO_1126SO_1127
SMEL266834 SMC02376SMC02858SMC01142SMC02857SMC02858
SMED366394 SMED_0648SMED_3390SMED_0012SMED_3389SMED_3390
SLOI323850 SHEW_1787SHEW_2843SHEW_2772SHEW_2844SHEW_2843
SHAL458817 SHAL_1729SHAL_3166SHAL_3081SHAL_3167SHAL_3166
SHAE279808 SH1336SH1336SH1337SH1335SH1337
SFLE373384 SFV_0676SFV_2130SFV_1012SFV_2857SFV_0012SFV_0013
SENT454169 SEHA_C0776SEHA_C2353SEHA_C1222SEHA_C2897SEHA_C0013SEHA_C0014
SENT321314 SCH_0687SCH_2128SCH_1063SCH_2683SCH_0012SCH_0013
SENT295319 SPA0327SPA0741SPA1738SPA2540SPA0012SPA0013
SENT220341 STY2785STY2338STY1148STY2868STY0012STY0013
SENT209261 T0317T0747T1808T2636T0012T0013
SDYS300267 SDY_2193SDY_0974SDY_2787SDY_0013SDY_0014
SDEN318161 SDEN_2099SDEN_1183SDEN_2572SDEN_1182SDEN_1183
SBOY300268 SBO_0513SBO_0896SBO_2231SBO_2749SBO_0015SBO_0016
SBAL402882 SHEW185_1822SHEW185_3410SHEW185_1342SHEW185_3411SHEW185_3410
SBAL399599 SBAL195_1871SBAL195_3536SBAL195_1379SBAL195_3537SBAL195_3536
SAUR93062 SACOL1637SACOL1637SACOL1636SACOL1638SACOL1636
SAUR93061 SAOUHSC_01683SAOUHSC_01683SAOUHSC_01682SAOUHSC_01684SAOUHSC_01682
SAUR426430 NWMN_1483NWMN_1483NWMN_1482NWMN_1484NWMN_1482
SAUR418127 SAHV_1567SAHV_1567SAHV_1566SAHV_1568SAHV_1566
SAUR367830 SAUSA300_1540SAUSA300_1540SAUSA300_1539SAUSA300_1541SAUSA300_1539
SAUR359787 SAURJH1_1672SAURJH1_1672SAURJH1_1671SAURJH1_1673SAURJH1_1671
SAUR359786 SAURJH9_1638SAURJH9_1638SAURJH9_1637SAURJH9_1639SAURJH9_1637
SAUR282459 SAS1518SAS1518SAS1517SAS1519SAS1517
SAUR282458 SAR1657SAR1657SAR1656SAR1658SAR1656
SAUR196620 MW1532MW1532MW1531MW1533MW1531
SAUR158879 SA1409SA1409SA1408SA1410SA1408
SAUR158878 SAV1580SAV1580SAV1579SAV1581SAV1579
RTYP257363 RT0176RT0190RT0175RT0620RT0176RT0175
RSPH349102 RSPH17025_2766RSPH17025_4252RSPH17025_2656RSPH17025_2766RSPH17025_2765
RSPH349101 RSPH17029_2835RSPH17029_3939RSPH17029_2880RSPH17029_2835RSPH17029_2834
RSPH272943 RSP_1173RSP_3200RSP_1219RSP_1173RSP_1172
RSP357808 ROSERS_3460ROSERS_3246ROSERS_1646ROSERS_3460ROSERS_3459
RSOL267608 RSP0521RSC0639RSC2634RSC2639RSC2635RSC2634
RPRO272947 RP185RP200RP184RP629RP185RP184
RPOM246200 SPO_0043SPO_0092SPO_0010SPO_0043SPO_0044
RPAL316056 RPC_0260RPC_1138RPC_0327RPC_0329RPC_0330
RPAL316055 RPE_0414RPE_4592RPE_0351RPE_0349RPE_0348
RMET266264 RMET_5657RMET_2921RMET_1004RMET_2922RMET_2921
RLEG216596 RL1452RL0151RL0382RL0152RL0151
RFER338969 RFER_0832RFER_1948RFER_0490RFER_1970RFER_1969RFER_1968
REUT381666 H16_B2209H16_A3088H16_A1137H16_A3089H16_A3088
REUT264198 REUT_B4956REUT_A2784REUT_A1040REUT_A2785REUT_A2784
RETL347834 RHE_CH01303RHE_CH00144RHE_CH00365RHE_CH00145RHE_CH00144
RBEL336407 RBE_1113RBE_1114RBE_0606RBE_1113RBE_1114
RAKA293614 A1C_01330A1C_01325A1C_04955A1C_01330A1C_01325
PTHE370438 PTH_0878PTH_0878PTH_0879PTH_0877PTH_0879
PSYR223283 PSPTO_4294PSPTO_4898PSPTO_4897PSPTO_4506PSPTO_4505PSPTO_4504
PSYR205918 PSYR_3997PSYR_4441PSYR_4440PSYR_4196PSYR_4195PSYR_4194
PSTU379731 PST_3327PST_2971PST_3328PST_3327PST_3326
PSP296591 BPRO_2182BPRO_2651BPRO_1171BPRO_3125BPRO_3126BPRO_3127
PSP117 RB2429RB10242RB8974RB9105RB8972
PPUT76869 PPUTGB1_4906PPUTGB1_4905PPUTGB1_4729PPUTGB1_4728PPUTGB1_4727
PPUT351746 PPUT_4727PPUT_4726PPUT_4594PPUT_4593PPUT_4592
PPUT160488 PP_4849PP_4848PP_4728PP_4727PP_4726
PPRO298386 PBPRA2137PBPRA0698PBPRA0696PBPRA1484PBPRA0698
PNAP365044 PNAP_1795PNAP_1525PNAP_1527PNAP_1526PNAP_1525
PMUL272843 PM0322PM0740PM0334PM0736PM0740
PMEN399739 PMEN_0682PMEN_3623PMEN_3625PMEN_3624PMEN_3623
PING357804 PING_0515PING_1039PING_0916PING_0917PING_0918
PHAL326442 PSHAA2667PSHAA2176PSHAA2878PSHAA1222PSHAB0357PSHAB0358
PFLU220664 PFL_5232PFL_0627PFL_0628PFL_0826PFL_0827PFL_0828
PFLU216595 PFLU1377PFLU0574PFLU0575PFLU5270PFLU5269PFLU5268
PFLU205922 PFL_1886PFL_0576PFL_0577PFL_0762PFL_0763PFL_0764
PENT384676 PSEEN1412PSEEN4897PSEEN4896PSEEN0777PSEEN0778PSEEN0779
PATL342610 PATL_0780PATL_2100PATL_1986PATL_1987PATL_1988
PAER208964 PA4761PA4873PA4760PA4762PA4761PA4760
PAER208963 PA14_62970PA14_64450PA14_62960PA14_62990PA14_62970PA14_62960
OANT439375 OANT_0492OANT_0789OANT_0180OANT_0790OANT_0789
NHAM323097 NHAM_1036NHAM_0767NHAM_0153NHAM_0155NHAM_0156
NEUT335283 NEUT_0412NEUT_1445NEUT_0411NEUT_0412NEUT_0413
NEUR228410 NE1949NE1155NE1950NE1949NE1948
MXAN246197 MXAN_0858MXAN_0750MXAN_6672MXAN_3192MXAN_0750
MTHE349307 MTHE_0731MTHE_0731MTHE_0730MTHE_0732MTHE_0730
MSUC221988 MS0898MS0898MS0899MS0743MS0898MS0899
MSP409 M446_6270M446_2578M446_2184M446_6270M446_6271
MSP400668 MMWYL1_1393MMWYL1_1384MMWYL1_3963MMWYL1_3965MMWYL1_3964MMWYL1_3963
MMAG342108 AMB4440AMB4304AMB4496AMB4440AMB4441
MFLA265072 MFLA_0804MFLA_1134MFLA_0752MFLA_0751MFLA_0750
MCAP243233 MCA_1856MCA_1727MCA_1857MCA_1856MCA_1855
MAQU351348 MAQU_3362MAQU_3023MAQU_3363MAQU_3362MAQU_3361
LSPH444177 BSPH_3798BSPH_3798BSPH_3797BSPH_3799BSPH_3797
LSAK314315 LSA1236LSA1236LSA1235LSA1237LSA1235
LINT363253 LI0912LI0912LI0124LI1048LI0912
LCHO395495 LCHO_0508LCHO_2577LCHO_2575LCHO_2576LCHO_2577
KPNE272620 GKPORF_B2192GKPORF_B1806GKPORF_B3869GKPORF_B2269GKPORF_B4279GKPORF_B4280
JSP375286 MMA_2304MMA_1904MMA_2884MMA_2883MMA_2882
HNEP81032 HNE_3321HNE_0525HNE_0761HNE_3318HNE_3321HNE_0761
HHAL349124 HHAL_0145HHAL_0145HHAL_1477HHAL_1476HHAL_1475
HDUC233412 HD_0189HD_0188HD_1073HD_0189HD_0188
HCHE349521 HCH_05542HCH_02507HCH_00524HCH_01223HCH_01224HCH_01225
HARS204773 HEAR1095HEAR1440HEAR2648HEAR2647HEAR2646
GURA351605 GURA_2824GURA_1521GURA_0210GURA_0211GURA_0212
GTHE420246 GTNG_2440GTNG_2440GTNG_2439GTNG_2441GTNG_2439
GKAU235909 GK2504GK2504GK2503GK2505GK2503
FTUL458234 FTA_1257FTA_0299FTA_1256FTA_1257FTA_1258
FTUL418136 FTW_0571FTW_0779FTW_0570FTW_0571FTW_0572
FTUL401614 FTN_1284FTN_1522FTN_1285FTN_1284FTN_1283
FTUL393115 FTF1269CFTF1512CFTF1270CFTF1269CFTF1268C
FTUL393011 FTH_1167FTH_0280FTH_1166FTH_1167FTH_1168
FTUL351581 FTL_1191FTL_0281FTL_1190FTL_1191FTL_1192
FRANT DNAKDNAJ1GRPEDNAKDNAJ
FPHI484022 FPHI_1403FPHI_1117FPHI_1402FPHI_1403FPHI_1404
EFER585054 EFER_2453EFER_2156EFER_1147EFER_0459EFER_0010EFER_0011
EFAE226185 EF_1308EF_1308EF_1310EF_1307EF_1310
ECOO157 YBEWYEGDCBPAGRPEDNAKDNAJ
ECOL83334 ECS0689ECS2878ECS1155ECS3476ECS0014ECS0015
ECOL585397 ECED1_2415ECED1_1077ECED1_3052ECED1_0013ECED1_0014
ECOL585057 ECIAI39_0944ECIAI39_2154ECIAI39_2817ECIAI39_0013ECIAI39_0014
ECOL585056 ECUMN_0744ECUMN_2407ECUMN_1182ECUMN_2938ECUMN_0014ECUMN_0015
ECOL585055 EC55989_2326EC55989_1110EC55989_2902EC55989_0014EC55989_0015
ECOL585035 ECS88_2169ECS88_1015ECS88_2799ECS88_0014ECS88_0015
ECOL585034 ECIAI1_0634ECIAI1_2146ECIAI1_1043ECIAI1_2735ECIAI1_0014ECIAI1_0015
ECOL481805 ECOLC_2995ECOLC_1572ECOLC_2595ECOLC_1070ECOLC_3642ECOLC_3641
ECOL469008 ECBD_3003ECBD_1586ECBD_2594ECBD_1073ECBD_3605ECBD_3604
ECOL439855 ECSMS35_0671ECSMS35_0991ECSMS35_2124ECSMS35_2766ECSMS35_0012ECSMS35_0013
ECOL413997 ECB_00616ECB_01975ECB_01003ECB_02502ECB_00014ECB_00015
ECOL409438 ECSE_0720ECSE_2343ECSE_1062ECSE_2897ECSE_0013ECSE_0014
ECOL364106 UTI89_C2345UTI89_C1064UTI89_C2947UTI89_C0016UTI89_C0017
ECOL362663 ECP_1710ECP_2109ECP_1000ECP_2614ECP_0014ECP_0015
ECOL331111 ECE24377A_0678ECE24377A_2362ECE24377A_1118ECE24377A_2898ECE24377A_0014ECE24377A_0015
ECOL316407 ECK0643:JW0645:B0650ECK2063:JW2054:B2069ECK0991:JW0985:B1000ECK2610:JW2594:B2614ECK0014:JW0013:B0014ECK0015:JW0014:B0015
ECOL199310 C2164C2596C1136C3135C0019C0020
ECAR218491 ECA1820ECA3881ECA0842ECA3882ECA3881
DDES207559 DDE_1023DDE_1023DDE_1659DDE_1025DDE_1023DDE_0248
CVIO243365 CV_1089CV_2395CV_1645CV_1642CV_1643CV_1645
CSP501479 CSE45_3581CSE45_0562CSE45_3413CSE45_3581CSE45_3580
CSAL290398 CSAL_3094CSAL_1428CSAL_3095CSAL_3094CSAL_3093
CPSY167879 CPS_3821CPS_4835CPS_3820CPS_3823CPS_3821CPS_3820
CPRO264201 PC1499PC1499PC1498PC1499PC0468
CKLU431943 CKL_0902CKL_0512CKL_0901CKL_0902CKL_0903
CJAP155077 CJA_1169CJA_3347CJA_3346CJA_3348CJA_3347CJA_3346
CHYD246194 CHY_0415CHY_0415CHY_0416CHY_0414CHY_0416
CDES477974 DAUD_2057DAUD_2057DAUD_0453DAUD_2058DAUD_2056
CBUR434922 COXBU7E912_1378COXBU7E912_1223COXBU7E912_1381COXBU7E912_1378COXBU7E912_1377
CBUR360115 COXBURSA331_A1439COXBURSA331_A1271COXBURSA331_A1442COXBURSA331_A1439COXBURSA331_A1438
CBUR227377 CBU_1290CBU_1123CBU_1293CBU_1290CBU_1289
CBLO203907 BFL114BFL115BFL544BFL114BFL115
BWEI315730 BCERKBAB4_4387BCERKBAB4_4165BCERKBAB4_4164BCERKBAB4_4166BCERKBAB4_4164
BVIE269482 BCEP1808_0484BCEP1808_0713BCEP1808_0710BCEP1808_0712BCEP1808_0713
BTHU412694 BALH_2859BALH_3904BALH_3903BALH_3905BALH_3903
BTHU281309 BT9727_4051BT9727_4051BT9727_4050BT9727_4052BT9727_4050
BTHA271848 BTH_I2937BTH_I1309BTH_I1306BTH_I1308BTH_I1309
BSUI470137 BSUIS_A0407BSUIS_A1966BSUIS_A0172BSUIS_A1965BSUIS_A1966
BSUI204722 BR_0376BR_2126BR_0171BR_2125BR_2126
BSUB BSU25470BSU25470BSU25460BSU25480BSU25460
BSP376 BRADO6516BRADO2148BRADO0171BRADO0164BRADO0163
BSP36773 BCEP18194_A3590BCEP18194_A3840BCEP18194_A3837BCEP18194_A3839BCEP18194_A3840
BPUM315750 BPUM_2280BPUM_2280BPUM_2279BPUM_2281BPUM_2279
BPSE320373 BURPS668_3599BURPS668_3276BURPS668_3280BURPS668_3278BURPS668_3276
BPSE320372 BURPS1710B_A3898BURPS1710B_A3595BURPS1710B_A3599BURPS1710B_A3597BURPS1710B_A3595
BPSE272560 BPSL3080BPSL2826BPSL2829BPSL2827BPSL2826
BOVI236 GBOORF0409GBOORF2119GBOORF0175GBOORF2118GBOORF2119
BMEL359391 BAB1_0406BAB1_2130BAB1_0170BAB1_2129BAB1_2130
BMEL224914 BMEI1549BMEI2001BMEI1777BMEI2002BMEI2001
BMAL320389 BMA10247_3173BMA10247_2204BMA10247_2208BMA10247_2206BMA10247_2204
BMAL320388 BMASAVP1_A0027BMASAVP1_A0502BMASAVP1_A0498BMASAVP1_A0500BMASAVP1_A0502
BMAL243160 BMA_2804BMA_2325BMA_2328BMA_2326BMA_2325
BJAP224911 BLR3152BLR2626BLR0676BLR0678BLR0680
BCLA66692 ABC0680ABC1659ABC1660ABC1658ABC1660
BCER572264 BCA_3239BCA_4425BCA_4424BCA_4426BCA_4424
BCER405917 BCE_4395BCE_4395BCE_4394BCE_4396BCE_4394
BCER315749 BCER98_3040BCER98_3040BCER98_3039BCER98_3041BCER98_3039
BCER288681 BCE33L2904BCE33L4061BCE33L4060BCE33L4062BCE33L4060
BCER226900 BC_4312BC_4312BC_4311BC_4313BC_4311
BCEN331272 BCEN2424_0502BCEN2424_0753BCEN2424_0750BCEN2424_0752BCEN2424_0753
BCEN331271 BCEN_2603BCEN_0269BCEN_0266BCEN_0268BCEN_0269
BCAN483179 BCAN_A0384BCAN_A2171BCAN_A0176BCAN_A2170BCAN_A2171
BANT592021 BAA_3251BAA_4558BAA_4557BAA_4559BAA_4557
BANT568206 BAMEG_1410BAMEG_4576BAMEG_4575BAMEG_4577BAMEG_4575
BANT261594 GBAA3202GBAA4539GBAA4538GBAA4540GBAA4538
BANT260799 BAS2977BAS4213BAS4212BAS4214BAS4212
BAMY326423 RBAM_023770RBAM_023770RBAM_023760RBAM_023780RBAM_023760
BAMB398577 BAMMC406_0433BAMMC406_0670BAMMC406_0667BAMMC406_0669BAMMC406_0670
BAMB339670 BAMB_0407BAMB_0647BAMB_0644BAMB_0646BAMB_0647
BABO262698 BRUAB1_0402BRUAB1_2101BRUAB1_0167BRUAB1_2100BRUAB1_2101
ASP76114 EBA3469EBA2728EBA4795EBA4794EBA4793
ASP62977 ACIAD2413ACIAD0406ACIAD3652ACIAD3654ACIAD3621
ASP62928 AZO3626AZO1062AZO1064AZO1063AZO1062
ASAL382245 ASA_1146ASA_0167ASA_2995ASA_2997ASA_2996ASA_2995
APLE434271 APJL_0935APJL_1952APJL_0385APJL_1953APJL_1952
APLE416269 APL_0925APL_1905APL_0367APL_1906APL_1905
AHYD196024 AHA_4146AHA_2982AHA_2984AHA_2983AHA_2982
AEHR187272 MLG_1900MLG_1899MLG_1901MLG_1900MLG_1899
ADEH290397 ADEH_1580ADEH_2261ADEH_1291ADEH_4329ADEH_1580ADEH_4327
ABOR393595 ABO_2084ABO_1662ABO_0313ABO_0314ABO_0315
ABAU360910 BAV3119BAV0873BAV2718BAV2716BAV2715
ABAC204669 ACID345_0480ACID345_0982ACID345_0979ACID345_3243ACID345_0982ACID345_3242
AAVE397945 AAVE_4256AAVE_0628AAVE_1225AAVE_1227AAVE_1226AAVE_1225


Organism features enriched in list (features available for 218 out of the 234 orgs in the list)
Feature    Pvalue       Num occurrences in list  Total num occurrences  
Arrangment:Clusters 0.00402351217
Arrangment:Pairs 0.004872953112
Arrangment:Singles 0.008467795286
Disease:Brucellosis 0.007101555
Disease:Bubonic_plague 0.002617066
Disease:Gastroenteritis 0.00345211013
Disease:Toxic-shock_syndrome_and_staphylococcal_scarlet_fever 0.0028580911
Disease:Tularemia 0.007101555
Endospores:No 2.211e-751211
GC_Content_Range4:0-40 1.160e-751213
GC_Content_Range4:40-60 0.0002377103224
GC_Content_Range7:0-30 4.248e-7347
GC_Content_Range7:30-40 0.002068848166
GC_Content_Range7:50-60 0.000091557107
GC_Content_Range7:60-70 0.002726363134
Genome_Size_Range5:0-2 1.039e-1223155
Genome_Size_Range5:2-4 0.000028552197
Genome_Size_Range5:4-6 1.105e-16114184
Genome_Size_Range5:6-10 0.00025462947
Genome_Size_Range9:0-1 0.0000385127
Genome_Size_Range9:1-2 1.674e-822128
Genome_Size_Range9:2-3 0.001925532120
Genome_Size_Range9:3-4 0.00827002077
Genome_Size_Range9:4-5 0.00004795396
Genome_Size_Range9:5-6 3.261e-116188
Genome_Size_Range9:6-8 0.00004642638
Gram_Stain:Gram_Neg 2.933e-11162333
Gram_Stain:Gram_Pos 0.002823843150
Habitat:Multiple 0.002095681178
Habitat:Terrestrial 0.00843541831
Motility:No 0.000396040151
Motility:Yes 2.843e-6126267
Optimal_temp.:- 0.0005983114257
Optimal_temp.:25-30 0.00409111319
Optimal_temp.:37 0.005275529106
Oxygen_Req:Anaerobic 6.648e-914102
Oxygen_Req:Facultative 2.647e-11112201
Pathogenic_in:Animal 0.00020703866
Pathogenic_in:Human 0.004307793213
Pathogenic_in:No 0.000597567226
Shape:Coccobacillus 0.00001701111
Shape:Rod 7.610e-10164347
Shape:Sphere 0.0013630119
Shape:Spiral 0.0001100334
Temp._range:Hyperthermophilic 0.0002348123



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ORGANISMS CONTAINING AT MOST 1 GENES FROM THE GROUP:

Total number of orgs: 80
Effective number of orgs (counting one per cluster within 468 clusters): 69

Organism list
Homologs in each organism in the list
Features enriched in organism list


Follow (ncbi) link, when present, to find the set of organism features for each organism
Org ID  Org Name  # genes in group found in org  
UURE95667 Ureaplasma urealyticum serovar 131
UPAR505682 ncbi Ureaplasma parvum serovar 3 str. ATCC 278151
TWHI218496 ncbi Tropheryma whipplei TW08/271
TWHI203267 ncbi Tropheryma whipplei Twist1
TVOL273116 ncbi Thermoplasma volcanium GSS11
TSP28240 Thermotoga sp.1
TPET390874 ncbi Thermotoga petrophila RKU-11
TPEN368408 ncbi Thermofilum pendens Hrk 50
TPAL243276 ncbi Treponema pallidum pallidum Nichols1
TMAR243274 ncbi Thermotoga maritima MSB81
TKOD69014 ncbi Thermococcus kodakarensis KOD10
TACI273075 ncbi Thermoplasma acidophilum DSM 17281
STOK273063 ncbi Sulfolobus tokodaii 70
SSOL273057 ncbi Sulfolobus solfataricus P20
SMAR399550 ncbi Staphylothermus marinus F10
SCO ncbi Streptomyces coelicolor A3(2)1
SACI330779 ncbi Sulfolobus acidocaldarius DSM 6390
RSAL288705 ncbi Renibacterium salmoninarum ATCC 332091
PTOR263820 ncbi Picrophilus torridus DSM 97900
PMOB403833 ncbi Petrotoga mobilis SJ951
PISL384616 ncbi Pyrobaculum islandicum DSM 41840
PHOR70601 ncbi Pyrococcus horikoshii OT30
PFUR186497 ncbi Pyrococcus furiosus DSM 36380
PARS340102 ncbi Pyrobaculum arsenaticum DSM 135140
PAER178306 ncbi Pyrobaculum aerophilum IM20
PACN267747 ncbi Propionibacterium acnes KPA1712021
PABY272844 ncbi Pyrococcus abyssi GE50
OTSU357244 ncbi Orientia tsutsugamushi Boryong1
NSP35761 Nocardioides sp.1
NFAR247156 ncbi Nocardia farcinica IFM 101521
MVAN350058 ncbi Mycobacterium vanbaalenii PYR-11
MTUB419947 ncbi Mycobacterium tuberculosis H37Ra1
MTUB336982 ncbi Mycobacterium tuberculosis F111
MTBRV ncbi Mycobacterium tuberculosis H37Rv1
MTBCDC ncbi Mycobacterium tuberculosis CDC15511
MSYN262723 ncbi Mycoplasma synoviae 531
MSED399549 ncbi Metallosphaera sedula DSM 53480
MPUL272635 ncbi Mycoplasma pulmonis UAB CTIP1
MPEN272633 ncbi Mycoplasma penetrans HF-21
MMYC272632 ncbi Mycoplasma mycoides mycoides SC str. PG11
MMOB267748 ncbi Mycoplasma mobile 163K1
MMAR444158 ncbi Methanococcus maripaludis C60
MMAR426368 ncbi Methanococcus maripaludis C70
MMAR402880 ncbi Methanococcus maripaludis C50
MMAR267377 ncbi Methanococcus maripaludis S20
MLEP272631 ncbi Mycobacterium leprae TN1
MLAB410358 ncbi Methanocorpusculum labreanum Z1
MKAN190192 ncbi Methanopyrus kandleri AV190
MJAN243232 ncbi Methanocaldococcus jannaschii DSM 26610
MHYO295358 ncbi Mycoplasma hyopneumoniae 2321
MHYO262722 ncbi Mycoplasma hyopneumoniae 74481
MHYO262719 ncbi Mycoplasma hyopneumoniae J1
MGIL350054 ncbi Mycobacterium gilvum PYR-GCK1
MFLO265311 ncbi Mesoplasma florum L11
MCAP340047 ncbi Mycoplasma capricolum capricolum ATCC 273431
MBOV410289 ncbi Mycobacterium bovis BCG str. Pasteur 1173P21
MBOV233413 ncbi Mycobacterium bovis AF2122/971
MAVI243243 ncbi Mycobacterium avium 1041
MART243272 ncbi Mycoplasma arthritidis 158L3-11
MAEO419665 ncbi Methanococcus aeolicus Nankai-30
LXYL281090 ncbi Leifsonia xyli xyli CTCB070
IHOS453591 ncbi Ignicoccus hospitalis KIN4/I0
HBUT415426 ncbi Hyperthermus butylicus DSM 54560
FNOD381764 ncbi Fervidobacterium nodosum Rt17-B11
FMAG334413 ncbi Finegoldia magna ATCC 293281
CMIC443906 ncbi Clavibacter michiganensis michiganensis NCPPB 3820
CMIC31964 ncbi Clavibacter michiganensis sepedonicus0
CMAQ397948 ncbi Caldivirga maquilingensis IC-1670
CKOR374847 ncbi Candidatus Korarchaeum cryptofilum OPF80
CJEI306537 ncbi Corynebacterium jeikeium K4111
CDIP257309 ncbi Corynebacterium diphtheriae NCTC 131291
BLON206672 ncbi Bifidobacterium longum NCC27051
BGAR290434 ncbi Borrelia garinii PBi1
BBUR224326 ncbi Borrelia burgdorferi B311
BAFZ390236 ncbi Borrelia afzelii PKo1
AURANTIMONAS Aurantimonas manganoxydans SI85-9A10
ASP1667 Arthrobacter sp.1
APER272557 ncbi Aeropyrum pernix K10
ANAE240017 Actinomyces oris MG11
AFUL224325 ncbi Archaeoglobus fulgidus DSM 43040


Names of the homologs of the genes in the group in each of these orgs
  G6357   EG12200   EG12193   EG10416   EG10241   EG10240   
UURE95667 UU339
UPAR505682 UPA3_0355
TWHI218496 TW0728
TWHI203267 TW750
TVOL273116 TVN0488
TSP28240 TRQ2_0558
TPET390874 TPET_0544
TPEN368408
TPAL243276 TP_0216
TMAR243274 TM_0373
TKOD69014
TACI273075 TA1087
STOK273063
SSOL273057
SMAR399550
SCO SCO3669
SACI330779
RSAL288705 RSAL33209_1909
PTOR263820
PMOB403833 PMOB_1649
PISL384616
PHOR70601
PFUR186497
PARS340102
PAER178306
PACN267747 PPA2040
PABY272844
OTSU357244 OTBS_0704
NSP35761 NOCA_4363
NFAR247156 NFA54090
MVAN350058 MVAN_0634
MTUB419947 MRA_0359
MTUB336982 TBFG_10355
MTBRV RV0350
MTBCDC MT0365
MSYN262723 MS53_0351
MSED399549
MPUL272635 MYPU_2230
MPEN272633 MYPE9490
MMYC272632 MSC_0610
MMOB267748 MMOB1130
MMAR444158
MMAR426368
MMAR402880
MMAR267377
MLEP272631 ML2496
MLAB410358 MLAB_0943
MKAN190192
MJAN243232
MHYO295358 MHP072
MHYO262722 MHP7448_0067
MHYO262719 MHJ_0063
MGIL350054 MFLV_0260
MFLO265311 MFL415
MCAP340047 MCAP_0369
MBOV410289 BCG_0389
MBOV233413 MB0358
MAVI243243 MAV_4808
MART243272 MART0662
MAEO419665
LXYL281090
IHOS453591
HBUT415426
FNOD381764 FNOD_1209
FMAG334413 FMG_0780
CMIC443906
CMIC31964
CMAQ397948
CKOR374847
CJEI306537 JK0179
CDIP257309 DIP2120
BLON206672 BL0520
BGAR290434 BG0529
BBUR224326 BB_0518
BAFZ390236 BAPKO_0545
AURANTIMONAS
ASP1667 ARTH_3808
APER272557
ANAE240017 ANA_2041
AFUL224325


Organism features enriched in list (features available for 74 out of the 80 orgs in the list)
Feature    Pvalue       Num occurrences in list  Total num occurrences  
Arrangment:Chains 0.0028929492
Arrangment:Singles 0.000015553286
Disease:Tuberculosis 0.001973033
Endospores:No 7.207e-2365211
GC_Content_Range7:0-30 0.00018941547
Genome_Size_Range5:0-2 5.526e-1043155
Genome_Size_Range5:4-6 7.289e-68184
Genome_Size_Range9:0-1 0.00002321227
Genome_Size_Range9:1-2 0.000018831128
Genome_Size_Range9:5-6 0.0002576288
Gram_Stain:Gram_Neg 1.632e-820333
Habitat:Multiple 3.856e-67178
Habitat:Specialized 0.00001491853
Motility:No 8.058e-839151
Optimal_temp.:- 0.000033917257
Optimal_temp.:100 0.001973033
Optimal_temp.:37 0.003746822106
Optimal_temp.:80 0.001973033
Optimal_temp.:85 0.000241544
Oxygen_Req:Anaerobic 4.115e-628102
Oxygen_Req:Facultative 0.008358817201
Shape:Irregular_coccus 2.656e-81217
Shape:Rod 0.000479031347
Shape:Sphere 1.714e-71219
Temp._range:Hyperthermophilic 5.826e-151923
Temp._range:Mesophilic 1.810e-644473



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ORGANISMS ENRICHED FOR GROUP:

Total number of orgs: 3
Effective number of orgs (counting one per cluster within 468 clusters): 2

Organism list
Homologs in each organism in the list
Features enriched in organism list


Follow (ncbi) link, when present, to find the set of organism features for each organism
Org ID  Org Name    Pvalue       # genes in tgt genome found in org  # genes in group found in org  
RTYP257363 ncbi Rickettsia typhi Wilmington 0.00012543886
RPRO272947 ncbi Rickettsia prowazekii Madrid E 0.00012733896
MTHE349307 ncbi Methanosaeta thermophila PT 0.00954013995


Names of the homologs of the genes in the group in each of these orgs
  G6357   EG12200   EG12193   EG10416   EG10241   EG10240   
RTYP257363 RT0176RT0190RT0175RT0620RT0176RT0175
RPRO272947 RP185RP200RP184RP629RP185RP184
MTHE349307 MTHE_0731MTHE_0731MTHE_0730MTHE_0732MTHE_0730


Organism features enriched in list (features available for 3 out of the 3 orgs in the list)
Feature    Pvalue       Num occurrences in list  Total num occurrences  
Disease:Endemic_typhus_and_murine_typhus 0.005145811
Disease:Louse-borne_typhus 0.005145811
Disease:Mediterranean_spotted_fever 0.005145811



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ORGANISMS DEPLETED FOR GROUP:




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PHYLOGENETIC PROFILE SIMILARITY WITH KNOWN PATHWAYS:

Pathways or complexes with absolute value of Pearson coefficient with respect to candidate larger than 0.4 are listed below
The candidate is assumed to exist in orgs listed in section List of organisms containing most genes from the group


Pathway or complex  # Orgs containing it  # of those orgs also containing candidate  Pearson Coeff  
PWY-5918 (heme biosynthesis I)2721760.4934
COBALSYN-PWY (adenosylcobalamin salvage from cobinamide I)1951410.4843
HEME-BIOSYNTHESIS-II (heme biosynthesis from uroporphyrinogen-III I)2861770.4628
3-HYDROXYPHENYLACETATE-DEGRADATION-PWY (4-hydroxyphenylacetate degradation)1491120.4354
GLYCOCAT-PWY (glycogen degradation I)2461560.4313
PWY-5084 (2-ketoglutarate dehydrogenase complex)3261860.4218
AST-PWY (arginine degradation II (AST pathway))120950.4196
PWY-6196 (serine racemization)102840.4093
PWY-5111 (CMP-KDO biosynthesis II (from D-arabinose 5-phosphate))3001740.4068
TYRFUMCAT-PWY (tyrosine degradation I)1841250.4061
PWY0-1241 (ADP-L-glycero-β-D-manno-heptose biosynthesis)2181400.4039



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PAIRWISE GENOME CONTEXT SCORE MATRIX:

  EG12200   EG12193   EG10416   EG10241   EG10240   
G63570.9997120.9995240.9997510.9997930.999761
EG122000.9995020.9994720.9989880.999428
EG121930.9995220.9996530.999831
EG104160.9998730.999904
EG102410.999971
EG10240



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PAIRWISE BLAST SCORES:

  G6357   EG12200   EG12193   EG10416   EG10241   EG10240   
G63570.0f0-----
EG12200-0.0f0----
EG12193--0.0f0--4.5e-46
EG10416---0.0f0--
EG10241----0.0f0-
EG10240-----0.0f0



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PATHWAYS OR PROTEIN COMPLEX MATCHES IN TARGET ORG:

For each case, all genes involved in the pathway or complex are listed. For each gene we list: a tag indicating whether the gene is part of the candidate list or not, the average and the minimum scores of the gene to the candidate list, the gene name, and its product names.

- HSP70-CPLX (DnaJ/DnaK/GrpE) (degree of match pw to cand: 1.000, degree of match cand to pw: 0.500, average score: 1.000)
  Genes in pathway or complex:
   *in cand* 0.9998 0.9995 EG10416 (grpE) EG10416-MONOMER (phage lambda replication; host DNA synthesis; heat shock protein; protein repair)
   *in cand* 0.9997 0.9990 EG10241 (dnaK) EG10241-MONOMER (chaperone Hsp70; DNA biosynthesis; autoregulated heat shock proteins)
   *in cand* 0.9998 0.9994 EG10240 (dnaJ) EG10240-MONOMER (chaperone with DnaK; heat shock protein)
  Genes in candidate but not in this pathway or complex:
   *in cand* 0.9997 0.9995 EG12193 (cbpA) EG12193-MONOMER (CbpA monomer)
   *in cand* 0.9995 0.9990 EG12200 (yegD) EG12200-MONOMER (actin family protein)
   *in cand* 0.9998 0.9995 G6357 (hscC) G6357-MONOMER (Hsc62, Hsp70 family chaperone, binds to RpoD and inhibits transcription)



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GENOME CONTEXT INFORMATION:

Each row corresponds to a replicon in an organism, each column to a gene in the candidate. The second column indicates whether the organims was included in the list used to compute the genome context scores or not. Some organisms are not included because they are phylogenetically too similar to others already in the list.
The number in the matrix indicate the position of the homolog of the gene in the replicon. All numbers are relative to the smaller one, which is assigned a position of zero. Two columns with the same number indicate that the two genes matched the same gene in that organism.

Genome browser links for gene clusters

The links below opens a genome browser BioCyc page for each cluster of genes in the target genome. These pages shows the central gene of the cluster in the target genome and its best homolog in the reference genomes, for the genomes that contain homologs for at least 75% of the genes in the group. Only one genome per phylogenetic cluster of organisms is shown, to keep the list smaller.

EG10240 EG10241 (centered at EG10240)
EG10416 (centered at EG10416)
EG12193 (centered at EG12193)
EG12200 (centered at EG12200)
G6357 (centered at G6357)


ORG:REPLICON:CIRC?\GENE  IN REF LIST  G6357   EG12200   EG12193   EG10416   EG10241   EG10240   
368/623340/623332/623413/623394/623419/623
AAEO224324:0:Tyes388--0388-
AAUR290340:2:Tyes002-0-
AAVE397945:0:Tyes35640584586585584
ABAC204669:0:Tyes050550227825052781
ABAU360910:0:Tyes-22510184418421841
ABOR393595:0:Tyes-18101383012
ABUT367737:0:Tyes0--10-
ACAU438753:0:Tyes-3751-364410
ACEL351607:0:Tyes0-2--2
ACRY349163:8:Tyes---210
ADEH290397:0:Tyes291979030662913064
AEHR187272:0:Tyes1-0210
AFER243159:0:Tyes--0422423424
AHYD196024:0:Tyes-10830210
ALAI441768:0:Tyes0-1---
AMAR234826:0:Tyes00--0337
AMAR329726:9:Tyes-0--1992-
AMET293826:0:Tyes27030-2704-2702
ANAE240017:0:Tyes--0---
AORE350688:0:Tyes11-0-2
APHA212042:0:Tyes310---3100
APLE416269:0:Tyes560-1581015821581
APLE434271:0:Tno527-1592015931592
ASAL382245:5:Tyes95202721272327222721
ASP1667:3:Tyes0-----
ASP232721:2:Tyes--2012
ASP62928:0:Tyes-26020210
ASP62977:0:Tyes1878-0301130122979
ASP76114:2:Tyes-4320121112101208
AVAR240292:3:Tyes5450--0-
AYEL322098:4:Tyes00----
BABO262698:1:Tno-2241859018581859
BAFZ390236:2:Fyes----0-
BAMB339670:3:Tno-0252249251252
BAMB398577:3:Tno-0242239241242
BAMY326423:0:Tyes1102-0
BANT260799:0:Tno0122712261228-1226
BANT261594:2:Tno0124212411243-1241
BANT568206:2:Tyes0308730863088-3086
BANT592021:2:Tno0129012891291-1289
BAPH198804:0:Tyes---9410
BAPH372461:0:Tyes----10
BBAC264462:0:Tyes-1861-239720
BBAC360095:0:Tyes--0710
BBRO257310:0:Tyes--0310
BBUR224326:21:Fno----0-
BCAN483179:1:Tno-2001928019271928
BCEN331271:2:Tno-23643023
BCEN331272:3:Tyes-0250247249250
BCER226900:1:Tyes1102-0
BCER288681:0:Tno0115011491151-1149
BCER315749:1:Tyes1102-0
BCER405917:1:Tyes1102-0
BCER572264:1:Tno0116411631165-1163
BCIC186490:0:Tyes--15701
BCLA66692:0:Tyes0100810091007-1009
BFRA272559:1:Tyes0--6020-
BFRA295405:0:Tno0--5200-
BGAR290434:2:Fyes----0-
BHAL272558:0:Tyes1-30-3
BHEN283166:0:Tyes---0910
BHER314723:0:Fyes---10-
BJAP224911:0:Fyes-24941967034
BLIC279010:0:Tyes110--0
BLON206672:0:Tyes0-----
BMAL243160:1:Tno-4370310
BMAL320388:1:Tno-0469465467469
BMAL320389:1:Tyes-9520420
BMEL224914:1:Tno-0457232458457
BMEL359391:1:Tno-2061791017901791
BOVI236:1:Tyes-1941675016741675
BPAR257311:0:Tno--0218821862185
BPER257313:0:Tyes--0134913471346
BPET94624:0:Tyes--1453023
BPSE272560:1:Tyes-2530210
BPSE320372:1:Tno-2960420
BPSE320373:1:Tno-3170420
BPUM315750:0:Tyes1102-0
BQUI283165:0:Tyes---0910
BSP107806:2:Tyes---3110
BSP36773:2:Tyes-0252249251252
BSP376:0:Tyes-60201871710
BSUB:0:Tyes2203-0
BSUI204722:1:Tyes-1971889018881889
BSUI470137:1:Tno-2271741017401741
BTHA271848:1:Tno-15923023
BTHE226186:0:Tyes3432--03432-
BTHU281309:1:Tno1102-0
BTHU412694:1:Tno0996995997-995
BTRI382640:1:Tyes---0910
BTUR314724:0:Fyes---10-
BVIE269482:7:Tyes-0229226228229
BWEI315730:4:Tyes223102-0
BXEN266265:1:Tyes2111-0---
CABO218497:0:Tyes0---072
CACE272562:1:Tyes11-0-2
CAULO:0:Tyes-1489-14501
CBEI290402:0:Tyes1--0-2
CBLO203907:0:Tyes0-142501
CBLO291272:0:Tno--144001
CBOT36826:1:Tno-1-2-0
CBOT441770:0:Tyes11-2-0
CBOT441771:0:Tno11-2-0
CBOT441772:1:Tno11-2-0
CBOT498213:1:Tno11-2-0
CBOT508765:1:Tyes758--0-2
CBOT515621:2:Tyes-1-2-0
CBOT536232:0:Tno11-2-0
CBUR227377:1:Tyes159-0162159158
CBUR360115:1:Tno156-0159156155
CBUR434922:2:Tno150-0153150149
CCAV227941:1:Tyes0---081
CCHL340177:0:Tyes0---0-
CCON360104:2:Tyes0--10-
CCUR360105:0:Tyes2--02-
CDES477974:0:Tyes1585158501586-1584
CDIF272563:1:Tyes1-02-0
CDIP257309:0:Tyes0-----
CEFF196164:0:Fyes2-0---
CFEL264202:1:Tyes86---860
CFET360106:0:Tyes0--10-
CGLU196627:0:Tyes2-0---
CHOM360107:1:Tyes0--10-
CHUT269798:0:Tyes-0--933-
CHYD246194:0:Tyes1120-2
CJAP155077:0:Tyes021412140214221412140
CJEI306537:0:Tyes0-----
CJEJ192222:0:Tyes1--01-
CJEJ195099:0:Tno1--01-
CJEJ354242:2:Tyes1--01-
CJEJ360109:0:Tyes0--10-
CJEJ407148:0:Tno1--01-
CKLU431943:1:Tyes3870-386387388
CMET456442:0:Tyes0406----
CMUR243161:1:Tyes56---560
CNOV386415:0:Tyes10320---1031
CPEL335992:0:Tyes----10
CPER195102:1:Tyes0--1805-1803
CPER195103:0:Tno0--2014-2012
CPER289380:3:Tyes01739-1740-1738
CPHY357809:0:Tyes11---0
CPNE115711:1:Tyes----0486
CPNE115713:0:Tno----4730
CPNE138677:0:Tno----4780
CPNE182082:0:Tno----4970
CPRO264201:0:Fyes10521052-105110520
CPSY167879:0:Tyes19910310
CRUT413404:0:Tyes--065810
CSAL290398:0:Tyes1691-0169216911690
CSP501479:7:Fyes167--0167166
CSP501479:8:Fyes-0----
CSP78:2:Tyes-2186-16202
CSUL444179:0:Tyes0---0-
CTEP194439:0:Tyes00-8300-
CTET212717:0:Tyes1--210
CTRA471472:0:Tyes5555--550
CTRA471473:0:Tno5555--550
CVES412965:0:Tyes--158301
CVIO243365:0:Tyes01339582579580582
DARO159087:0:Tyes--1156210
DDES207559:0:Tyes78578514287877850
DETH243164:0:Tyes0---0-
DGEO319795:1:Tyes00--0-
DHAF138119:0:Tyes1743-01744-1742
DNOD246195:0:Tyes--2012
DOLE96561:0:Tyes---011440
DPSY177439:2:Tyes163--1621630
DRAD243230:3:Tyes00----
DRED349161:0:Tyes11-2-0
DSHI398580:5:Tyes105--0105104
DSP216389:0:Tyes00--0-
DSP255470:0:Tno00--0-
DVUL882:1:Tyes0-1061-02420
ECAN269484:0:Tyes562---5620
ECAR218491:0:Tyes-9893081030823081
ECHA205920:0:Tyes429---4290
ECOL199310:0:Tno208225081085304101
ECOL316407:0:Tno6322062982260501
ECOL331111:6:Tno63722571054276601
ECOL362663:0:Tno16832086978259001
ECOL364106:1:Tno-23251045292401
ECOL405955:2:Tyes-2002915-01
ECOL409438:6:Tyes71623691074293501
ECOL413997:0:Tno60219641003249801
ECOL439855:4:Tno6449472056268101
ECOL469008:0:Tno19155181502025132512
ECOL481805:0:Tno19305061520025752574
ECOL585034:0:Tno61621171034270102
ECOL585035:0:Tno-2079983269102
ECOL585055:0:Tno-22961096286702
ECOL585056:2:Tno73424081186294402
ECOL585057:0:Tno-9502142280702
ECOL585397:0:Tno-23191044294802
ECOL83334:0:Tno68529261170353701
ECOLI:0:Tno64621021000266602
ECOO157:0:Tno68129401260354301
EFAE226185:3:Tyes1130-3
EFER585054:1:Tyes24242116112244402
ELIT314225:0:Tyes---078
ERUM254945:0:Tyes0---0391
ERUM302409:0:Tno0---0393
ESP42895:1:Tyes-2119-253701
FALN326424:0:Tyes0-2---
FJOH376686:0:Tyes0---0-
FMAG334413:1:Tyes0-----
FNOD381764:0:Tyes0-----
FNUC190304:0:Tyes2--0-4
FPHI484022:1:Tyes300-0299300301
FRANT:0:Tno1-248210
FSP106370:0:Tyes221790-2-
FSP1855:0:Tyes013261328-1326-
FSUC59374:0:Tyes0---0-
FTUL351581:0:Tno799-0798799800
FTUL393011:0:Tno737-0736737738
FTUL393115:0:Tyes1-235210
FTUL401614:0:Tyes1-236210
FTUL418136:0:Tno1-186012
FTUL458234:0:Tno764-0763764765
GBET391165:0:Tyes---210
GFOR411154:0:Tyes00--0-
GKAU235909:1:Tyes1102-0
GMET269799:1:Tyes---210
GOXY290633:5:Tyes-1201-03738
GSUL243231:0:Tyes--2362012
GTHE420246:1:Tyes1102-0
GURA351605:0:Tyes26101312-012
GVIO251221:0:Tyes-0--0-
HACI382638:1:Tyes0--10-
HARS204773:0:Tyes-0336146814671466
HAUR316274:2:Tyes1600--289290
HCHE349521:0:Tyes482819010666667668
HDUC233412:0:Tyes-1078710
HHAL349124:0:Tyes00-134213411340
HHEP235279:0:Tyes0--10-
HINF281310:0:Tyes--1660016611660
HINF374930:0:Tyes---0184-
HINF71421:0:Tno--1136011351136
HMAR272569:8:Tyes550---
HMOD498761:0:Tyes00---1
HMUK485914:1:Tyes00----
HNEP81032:0:Tyes2747023427442747234
HPY:0:Tno0--10-
HPYL357544:1:Tyes0--10-
HPYL85963:0:Tno0--10-
HSAL478009:4:Tyes00----
HSOM205914:1:Tyes--5460545546
HSOM228400:0:Tno--063610
HSP64091:2:Tno00----
HWAL362976:1:Tyes00----
ILOI283942:0:Tyes1--210
JSP290400:1:Tyes4--043
JSP375286:0:Tyes-4040988987986
KPNE272620:2:Tyes3780200645124042405
KRAD266940:2:Fyes0-2---
LACI272621:0:Tyes1102--
LBIF355278:2:Tyes--0-10
LBIF456481:2:Tno--0-10
LBOR355276:1:Tyes----10
LBOR355277:1:Tno----01
LBRE387344:2:Tyes-0-1--
LCAS321967:1:Tyes2----0
LCHO395495:0:Tyes-02095209320942095
LDEL321956:0:Tyes1102--
LDEL390333:0:Tyes1102--
LGAS324831:0:Tyes-120--
LHEL405566:0:Tyes110---
LINN272626:1:Tno1-02-0
LINT189518:1:Tyes----02
LINT267671:1:Tno----10
LINT363253:3:Tyes7857850921785-
LJOH257314:0:Tyes-102--
LLAC272622:5:Tyes0-1418---
LLAC272623:0:Tyes0-1270---
LMES203120:1:Tyes-0-10-
LMON169963:0:Tno1-02-0
LMON265669:0:Tyes1-02-0
LPLA220668:0:Tyes-0-10-
LPNE272624:0:Tno--239210
LPNE297245:1:Fno--191210
LPNE297246:1:Fyes--213210
LPNE400673:0:Tno--215210
LREU557436:0:Tyes-0---1
LSAK314315:0:Tyes1102-0
LSPH444177:1:Tyes1102-0
LWEL386043:0:Tyes0-11681170-1168
MABS561007:1:Tyes0---0-
MACE188937:0:Tyes1--0-2
MAER449447:0:Tyes234234--0-
MAQU351348:2:Tyes336-0337336335
MART243272:0:Tyes0-----
MAVI243243:0:Tyes0-----
MBAR269797:1:Tyes11-2-0
MBOV233413:0:Tno0-----
MBOV410289:0:Tno0-----
MBUR259564:0:Tyes11-2-0
MCAP243233:0:Tyes127-0128127126
MCAP340047:0:Tyes-0----
MEXT419610:0:Tyes-0-6026982699
MFLA265072:0:Tyes54384-210
MFLO265311:0:Tyes0-----
MGEN243273:0:Tyes00----
MGIL350054:3:Tyes0-----
MHUN323259:0:Tyes049----
MHYO262719:0:Tyes0-----
MHYO262722:0:Tno0-----
MHYO295358:0:Tno0-----
MLAB410358:0:Tyes-0----
MLEP272631:0:Tyes0-----
MLOT266835:2:Tyes-1894-011981197
MMAG342108:0:Tyes1360-192136137
MMAR368407:0:Tyes1-0---
MMAR394221:0:Tyes---520
MMAZ192952:0:Tyes1--2-0
MMOB267748:0:Tyes0-----
MMYC272632:0:Tyes-0----
MPEN272633:0:Tyes-0----
MPET420662:1:Tyes-0-294295296
MPNE272634:0:Tyes00----
MPUL272635:0:Tyes0-----
MSME246196:0:Tyes0-2---
MSP164756:1:Tno0-2---
MSP164757:0:Tno0-2---
MSP189918:2:Tyes0-2---
MSP266779:3:Tyes-0-336101
MSP400668:0:Tyes902623262526242623
MSP409:2:Tyes3955381-039553956
MSTA339860:0:Tyes0--1--
MSUC221988:0:Tyes1641641650164165
MSYN262723:0:Tyes0-----
MTBCDC:0:Tno0-----
MTBRV:0:Tno0-----
MTHE187420:0:Tyes0-1--1
MTHE264732:0:Tyes11-0-2
MTHE349307:0:Tyes1102-0
MTUB336982:0:Tno0-----
MTUB419947:0:Tyes0-----
MVAN350058:0:Tyes0-----
MXAN246197:0:Tyes-1030572423510
NARO279238:0:Tyes1284--610
NEUR228410:0:Tyes808-0809808807
NEUT335283:2:Tyes1-1017012
NFAR247156:2:Tyes0-----
NGON242231:0:Tyes0--527533977
NHAM323097:2:Tyes-845608023
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