CANDIDATE ID: 469

CANDIDATE ID: 469

NUMBER OF GENES: 6
AVERAGE SCORE:    9.9891447e-1 (range=[0.0,1.0])
AVERAGE MINIMUM BLAST P-VAL:    1.0000000e+0

Gene List
List of organisms containing most genes from the group
    Phylogenetic tree highlighting these organisms (opens new page)
List of organisms containing very few or no genes from the group
List of organisms enriched for group
List of organisms depleted for group
Phylogenetic profile similarity with known pathways
Pairwise genome context scores
Pairwise Blast scores
Pathway or protein complex matches in target organism
Genome context matrix
    Genes and their orthologs in genome browser BioCyc pages



GENE LIST:

- G7200 (yfcL) (b2325)
   Products of gene:
     - G7200-MONOMER (predicted protein)

- G7199 (mnmC) (b2324)
   Products of gene:
     - G7199-MONOMER (5-methylaminomethyl-2-thiouridine methyltransferase)
       Reactions:
        a tRNA containing 5-carboxymethylaminomethyl-2-thiouridine + S-adenosyl-L-methionine  ->  S-adenosyl-L-homocysteine + tRNA containing 5-methylaminomethyl-2-thiouridylate

- G0-9461 (pdxB) (b2320)
   Products of gene:
     - ERYTHRON4PDEHYDROG-MONOMER (erythronate-4-phosphate dehydrogenase)
       Reactions:
        erythronate-4-phosphate + NAD+  ->  2-oxo-3-hydroxy-4-phosphobutanoate + NADH + H+
         In pathways
         PWY0-845 (superpathway of pyridoxal 5'-phosphate biosynthesis and salvage)
         PYRIDOXSYN-PWY (pyridoxal 5'-phosphate biosynthesis I)

- EG11059 (usg) (b2319)
   Products of gene:
     - EG11059-MONOMER (predicted semialdehyde dehydrogenase)

- EG10274 (fabB) (b2323)
   Products of gene:
     - FABB-MONOMER (FabB)
     - FABB-CPLX (KASI)
       Reactions:
        a glutaryl-[acp] methyl ester + a malonyl-[acp]  ->  a 3-oxo-pimeloyl-[acp] methyl ester + CO2 + a holo-[acp]
         In pathways
         BIOTIN-BIOSYNTHESIS-PWY (biotin biosynthesis I)
         PWY-6519 (7-keto-8-aminopelargonate biosynthesis I)
        a cis-delta5-dodecenoyl-[acp] + a malonyl-[acp]  ->  a 3-oxo-cis-delta7-tetradecenoyl-[acp] + a holo-[acp] + CO2
         In pathways
         PWY-6284 (superpathway of unsaturated fatty acids biosynthesis (E. coli))
         PWY-6285 (PWY-6285)
         PWY-6282 (palmitoleate biosynthesis I)
        a cis-delta7-tetradecenoyl-[acp] + a malonyl-[acp]  ->  a 3-oxo-cis-delta9-hexadecenoyl-[acp] + a holo-[acp] + CO2
         In pathways
         PWY-6284 (superpathway of unsaturated fatty acids biosynthesis (E. coli))
         PWY-6285 (PWY-6285)
         PWY-6282 (palmitoleate biosynthesis I)
        an octanoyl-[acp] + a malonyl-[acp]  ->  a 3-oxo-decanoyl-[acp] + CO2 + a holo-[acp]
         In pathways
         PWY-6285 (PWY-6285)
         PWY-6113 (PWY-6113)
         PWY-5156 (PWY-5156)
         PWY-5971 (palmitate biosynthesis II (bacteria and plants))
        a decanoyl-[acp] + a malonyl-[acp]  ->  a 3-oxo-dodecanoyl-[acp] + CO2 + a holo-[acp]
         In pathways
         PWY-6285 (PWY-6285)
         PWY-6113 (PWY-6113)
         PWY-5156 (PWY-5156)
         PWY-5971 (palmitate biosynthesis II (bacteria and plants))
        a dodecanoyl-[acp] + a malonyl-[acp]  ->  a 3-oxo-meristoyl-[acp] + CO2 + a holo-[acp]
         In pathways
         PWY-6285 (PWY-6285)
         PWY-6113 (PWY-6113)
         PWY-5156 (PWY-5156)
         PWY-5971 (palmitate biosynthesis II (bacteria and plants))
        a myristoyl-[acp] + a malonyl-[acp]  ->  a 3-oxo-palmitoyl-[acp] + CO2 + a holo-[acp]
         In pathways
         PWY-6285 (PWY-6285)
         PWY-6113 (PWY-6113)
         PWY-5156 (PWY-5156)
         PWY-5971 (palmitate biosynthesis II (bacteria and plants))
        a butyryl-[acp] + a malonyl-[acp]  ->  a 3-oxo-hexanoyl-[acp] + CO2 + a holo-[acp]
         In pathways
         PWY-6285 (PWY-6285)
         PWY-6113 (PWY-6113)
         PWY-5156 (PWY-5156)
         PWY-5971 (palmitate biosynthesis II (bacteria and plants))
        a hexanoyl-[acp] + a malonyl-[acp]  ->  a 3-oxo-octanoyl-[acp] + CO2 + a holo-[acp]
         In pathways
         PWY-6285 (PWY-6285)
         PWY-6113 (PWY-6113)
         PWY-5156 (PWY-5156)
         PWY-5971 (palmitate biosynthesis II (bacteria and plants))
        a cis-delta3-decenoyl-[acp] + a malonyl-[acp]  ->  a 3-oxo-cis-delta5-dodecenoyl-[acp] + a holo-[acp] + CO2
         In pathways
         PWY-6285 (PWY-6285)
         PWY-6284 (superpathway of unsaturated fatty acids biosynthesis (E. coli))
         PWY0-881 (superpathway of fatty acid biosynthesis I (E. coli))
         PWY0-862 (cis-dodecenoyl biosynthesis)
        a malonyl-[acp] + an acetyl-[acp]  ->  a holo-[acp] + an acetoacetyl-[acp] + CO2
         In pathways
         PWY0-881 (superpathway of fatty acid biosynthesis I (E. coli))
         FASYN-INITIAL-PWY (superpathway of fatty acid biosynthesis initiation (E. coli))
         PWY-5965 (fatty acid biosynthesis initiation III)
         PWY-5966 (fatty acid biosynthesis initiation II)
        a malonyl-[acp] + a 2,3,4-saturated fatty acyl-[acp]  ->  a holo-[acp] + a beta-ketoacyl-[acp] + CO2
         In pathways
         PWY0-881 (superpathway of fatty acid biosynthesis I (E. coli))
         FASYN-ELONG-PWY (fatty acid elongation -- saturated)
        a malonyl-[acp] + H+  ->  an acetyl-[acp] + CO2
         In pathways
         PWY0-881 (superpathway of fatty acid biosynthesis I (E. coli))
         FASYN-INITIAL-PWY (superpathway of fatty acid biosynthesis initiation (E. coli))
         PWY-5965 (fatty acid biosynthesis initiation III)

- EG10218 (dedD) (b2314)
   Products of gene:
     - EG10218-MONOMER (cell division protein DedD)



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ORGANISMS CONTAINING AT LEAST 5 GENES FROM THE GROUP:

Total number of orgs: 71
Effective number of orgs (counting one per cluster within 468 clusters): 36

Organism list
Homologs in each organism in the list
Features enriched in organism list


Follow (ncbi) link, when present, to find the set of organism features for each organism
Org ID  Org Name  # genes in group found in org  
YPSE349747 ncbi Yersinia pseudotuberculosis IP 317586
YPSE273123 ncbi Yersinia pseudotuberculosis IP 329536
YPES386656 ncbi Yersinia pestis Pestoides F6
YPES377628 ncbi Yersinia pestis Nepal5166
YPES360102 ncbi Yersinia pestis Antiqua6
YPES349746 ncbi Yersinia pestis Angola6
YPES214092 ncbi Yersinia pestis CO926
YPES187410 ncbi Yersinia pestis KIM 106
YENT393305 ncbi Yersinia enterocolitica enterocolitica 80816
VVUL216895 ncbi Vibrio vulnificus CMCP66
VVUL196600 ncbi Vibrio vulnificus YJ0166
VPAR223926 ncbi Vibrio parahaemolyticus RIMD 22106336
VFIS312309 ncbi Vibrio fischeri ES1146
VCHO345073 ncbi Vibrio cholerae O3956
VCHO ncbi Vibrio cholerae O1 biovar El Tor str. N169615
STYP99287 ncbi Salmonella enterica enterica serovar Typhimurium str. LT26
SSP94122 ncbi Shewanella sp. ANA-36
SSON300269 ncbi Shigella sonnei Ss0466
SSED425104 ncbi Shewanella sediminis HAW-EB36
SPRO399741 ncbi Serratia proteamaculans 5686
SPEA398579 ncbi Shewanella pealeana ATCC 7003456
SONE211586 ncbi Shewanella oneidensis MR-16
SLOI323850 ncbi Shewanella loihica PV-46
SHIGELLA ncbi Shigella flexneri 2a str. 2457T6
SHAL458817 ncbi Shewanella halifaxensis HAW-EB46
SGLO343509 ncbi Sodalis glossinidius morsitans5
SFLE373384 ncbi Shigella flexneri 5 str. 84016
SFLE198214 ncbi Shigella flexneri 2a str. 3016
SENT454169 ncbi Salmonella enterica enterica serovar Heidelberg str. SL4766
SENT321314 ncbi Salmonella enterica enterica serovar Choleraesuis str. SC-B676
SENT295319 ncbi Salmonella enterica enterica serovar Paratyphi A str. ATCC 91506
SENT220341 ncbi Salmonella enterica enterica serovar Typhi str. CT186
SENT209261 ncbi Salmonella enterica enterica serovar Typhi str. Ty26
SDYS300267 ncbi Shigella dysenteriae Sd1976
SDEN318161 ncbi Shewanella denitrificans OS2176
SBOY300268 ncbi Shigella boydii Sb2276
SBAL402882 ncbi Shewanella baltica OS1856
SBAL399599 ncbi Shewanella baltica OS1956
PPRO298386 ncbi Photobacterium profundum SS96
PLUM243265 ncbi Photorhabdus luminescens laumondii TTO16
PING357804 ncbi Psychromonas ingrahamii 376
PHAL326442 ncbi Pseudoalteromonas haloplanktis TAC1256
PATL342610 ncbi Pseudoalteromonas atlantica T6c6
KPNE272620 ncbi Klebsiella pneumoniae pneumoniae MGH 785786
ILOI283942 ncbi Idiomarina loihiensis L2TR6
ESP42895 Enterobacter sp.6
EFER585054 ncbi Escherichia fergusonii ATCC 354696
ECOO157 ncbi Escherichia coli O157:H7 EDL9336
ECOL83334 Escherichia coli O157:H76
ECOL585397 ncbi Escherichia coli ED1a6
ECOL585057 ncbi Escherichia coli IAI396
ECOL585056 ncbi Escherichia coli UMN0266
ECOL585055 ncbi Escherichia coli 559896
ECOL585035 ncbi Escherichia coli S886
ECOL585034 ncbi Escherichia coli IAI16
ECOL481805 ncbi Escherichia coli ATCC 87396
ECOL469008 ncbi Escherichia coli BL21(DE3)6
ECOL439855 ncbi Escherichia coli SMS-3-56
ECOL413997 ncbi Escherichia coli B str. REL6066
ECOL409438 ncbi Escherichia coli SE116
ECOL405955 ncbi Escherichia coli APEC O16
ECOL364106 ncbi Escherichia coli UTI896
ECOL362663 ncbi Escherichia coli 5366
ECOL331111 ncbi Escherichia coli E24377A6
ECOL316407 ncbi Escherichia coli K-12 substr. W31106
ECOL199310 ncbi Escherichia coli CFT0736
ECAR218491 ncbi Pectobacterium atrosepticum SCRI10436
CPSY167879 ncbi Colwellia psychrerythraea 34H6
ASAL382245 ncbi Aeromonas salmonicida salmonicida A4496
AHYD196024 Aeromonas hydrophila dhakensis6
ABOR393595 ncbi Alcanivorax borkumensis SK25


Names of the homologs of the genes in the group in each of these orgs
  G7200   G7199   G0-9461   EG11059   EG10274   EG10218   
YPSE349747 YPSIP31758_1409YPSIP31758_1410YPSIP31758_1418YPSIP31758_1419YPSIP31758_1411YPSIP31758_1424
YPSE273123 YPTB2628YPTB2627YPTB2620YPTB2619YPTB2626YPTB2614
YPES386656 YPDSF_2005YPDSF_2004YPDSF_1997YPDSF_1996YPDSF_2003YPDSF_1991
YPES377628 YPN_2191YPN_2190YPN_2183YPN_2182YPN_2189YPN_2177
YPES360102 YPA_2088YPA_2087YPA_2080YPA_2079YPA_2086YPA_2074
YPES349746 YPANGOLA_A0373YPANGOLA_A0372YPANGOLA_A0364YPANGOLA_A0362YPANGOLA_A0371YPANGOLA_A0357
YPES214092 YPO2755YPO2756YPO2763YPO2765YPO2757YPO2770
YPES187410 Y1589Y1590Y1597Y1598Y1591Y1603
YENT393305 YE1285YE1286YE1307YE1308YE1287YE1313
VVUL216895 VV1_1984VV1_1985VV1_1988VV1_1989VV1_1986VV1_1995
VVUL196600 VV2431VV2430VV2428VV2427VV2429VV2421
VPAR223926 VP2198VP2195VP2193VP2192VP2194VP2187
VFIS312309 VF1801VF1701VF1699VF1698VF1700VF1693
VCHO345073 VC0395_A1696VC0395_A1694VC0395_A1692VC0395_A1691VC0395_A1693VC0395_A0523
VCHO VC2112VC2110VC2108VC2107VC1002
STYP99287 STM2380STM2379STM2370STM2369STM2378STM2364
SSP94122 SHEWANA3_1472SHEWANA3_1474SHEWANA3_1476SHEWANA3_1477SHEWANA3_1475SHEWANA3_1481
SSON300269 SSO_2383SSO_2382SSO_2378SSO_2377SSO_2381SSO_2372
SSED425104 SSED_1641SSED_1643SSED_1649SSED_1650SSED_1644SSED_1654
SPRO399741 SPRO_3370SPRO_3369SPRO_3336SPRO_3335SPRO_3368SPRO_3330
SPEA398579 SPEA_2585SPEA_1605SPEA_1612SPEA_1613SPEA_1606SPEA_1619
SONE211586 SO_3076SO_3073SO_3071SO_3070SO_3072SO_3066
SLOI323850 SHEW_2413SHEW_2411SHEW_2309SHEW_2308SHEW_2410SHEW_2304
SHIGELLA S2536S2535PDXBUSGFABBDEDD
SHAL458817 SHAL_2657SHAL_2655SHAL_2644SHAL_2643SHAL_2654SHAL_2639
SGLO343509 SG1624SG1621SG1620SG1623SG1615
SFLE373384 SFV_2394SFV_2393SFV_2389SFV_2388SFV_2392SFV_2383
SFLE198214 AAN43914.1AAN43913.1AAN43909.1AAN43908.1AAN43912.1AAN43903.1
SENT454169 SEHA_C2622SEHA_C2621SEHA_C2612SEHA_C2611SEHA_C2620SEHA_C2606
SENT321314 SCH_2382SCH_2381SCH_2372SCH_2371SCH_2380SCH_2366
SENT295319 SPA0484SPA0485SPA0494SPA0495SPA0486SPA0500
SENT220341 STY2611STY2610STY2601STY2600STY2609STY2595
SENT209261 T0484T0485T0494T0495T0486T0500
SDYS300267 SDY_2524SDY_2523SDY_2519SDY_2518SDY_2522SDY_2513
SDEN318161 SDEN_1540SDEN_1481SDEN_1483SDEN_1484SDEN_1482SDEN_1488
SBOY300268 SBO_2362SBO_2361SBO_2357SBO_2356SBO_2360SBO_2351
SBAL402882 SHEW185_2766SHEW185_2764SHEW185_2762SHEW185_2761SHEW185_2763SHEW185_2757
SBAL399599 SBAL195_2843SBAL195_2841SBAL195_2839SBAL195_2838SBAL195_2840SBAL195_2834
PPRO298386 PBPRA2694PBPRA2659PBPRA2656PBPRA2655PBPRA2658PBPRA2650
PLUM243265 PLU3186PLU3185PLU3175PLU3174PLU3184PLU3169
PING357804 PING_3139PING_1996PING_1994PING_1993PING_1995PING_1967
PHAL326442 PSHAA0988PSHAA2081PSHAA2079PSHAA2078PSHAA2080PSHAA2072
PATL342610 PATL_3385PATL_3384PATL_3364PATL_3363PATL_3383PATL_1607
KPNE272620 GKPORF_B2031GKPORF_B2030GKPORF_B2020GKPORF_B2019GKPORF_B2029GKPORF_B2014
ILOI283942 IL1023IL1022IL1020IL1019IL1021IL1014
ESP42895 ENT638_2873ENT638_2872ENT638_2869ENT638_2868ENT638_2871ENT638_2863
EFER585054 EFER_0838EFER_0839EFER_0843EFER_0844EFER_0840EFER_0849
ECOO157 Z3588Z3587PDXBUSGFABBDEDD
ECOL83334 ECS3209ECS3208ECS3204ECS3203ECS3207ECS3198
ECOL585397 ECED1_2789ECED1_2788ECED1_2784ECED1_2783ECED1_2787ECED1_2778
ECOL585057 ECIAI39_2474ECIAI39_2473ECIAI39_2469ECIAI39_2468ECIAI39_2472ECIAI39_2463
ECOL585056 ECUMN_2665ECUMN_2664ECUMN_2660ECUMN_2659ECUMN_2663ECUMN_2654
ECOL585055 EC55989_2569EC55989_2568EC55989_2564EC55989_2563EC55989_2567EC55989_2558
ECOL585035 ECS88_2473ECS88_2472ECS88_2468ECS88_2467ECS88_2471ECS88_2461
ECOL585034 ECIAI1_2402ECIAI1_2401ECIAI1_2397ECIAI1_2396ECIAI1_2400ECIAI1_2391
ECOL481805 ECOLC_1327ECOLC_1328ECOLC_1332ECOLC_1333ECOLC_1329ECOLC_1338
ECOL469008 ECBD_1334ECBD_1335ECBD_1339ECBD_1340ECBD_1336ECBD_1345
ECOL439855 ECSMS35_2482ECSMS35_2481ECSMS35_2476ECSMS35_2475ECSMS35_2480ECSMS35_2470
ECOL413997 ECB_02250ECB_02249ECB_02245ECB_02244ECB_02248ECB_02239
ECOL409438 ECSE_2634ECSE_2633ECSE_2629ECSE_2628ECSE_2632ECSE_2623
ECOL405955 APECO1_4239APECO1_4240APECO1_4244APECO1_4245APECO1_4241APECO1_4250
ECOL364106 UTI89_C2610UTI89_C2609UTI89_C2605UTI89_C2604UTI89_C2608UTI89_C2599
ECOL362663 ECP_2364ECP_2363ECP_2359ECP_2358ECP_2362ECP_2353
ECOL331111 ECE24377A_2620ECE24377A_2619ECE24377A_2614ECE24377A_2613ECE24377A_2618ECE24377A_2608
ECOL316407 ECK2319:JW2322:B2325ECK2318:JW5380:B2324ECK2314:JW2317:B2320ECK2313:JW2316:B2319ECK2317:JW2320:B2323ECK2308:JW5378:B2314
ECOL199310 C2871C2870C2865C2864C2869C2859
ECAR218491 ECA3065ECA3064ECA3060ECA3059ECA3063ECA3054
CPSY167879 CPS_3810CPS_3808CPS_3806CPS_3805CPS_3807CPS_3800
ASAL382245 ASA_2412ASA_2366ASA_2534ASA_2533ASA_2365ASA_2528
AHYD196024 AHA_1892AHA_1919AHA_2683AHA_2682AHA_1920AHA_2677
ABOR393595 ABO_0970ABO_1177ABO_1465ABO_0834ABO_1457


Organism features enriched in list (features available for 68 out of the 71 orgs in the list)
Feature    Pvalue       Num occurrences in list  Total num occurrences  
Arrangment:Chains 0.0004028292
Arrangment:Pairs 0.000015727112
Arrangment:Singles 0.004681943286
Disease:Bubonic_plague 2.059e-666
Disease:Dysentery 2.059e-666
Disease:Gastroenteritis 5.216e-81013
Disease:Urinary_tract_infection 0.005417534
GC_Content_Range4:0-40 3.417e-122213
GC_Content_Range4:40-60 4.442e-2866224
GC_Content_Range7:30-40 1.159e-82166
GC_Content_Range7:40-50 3.361e-629117
GC_Content_Range7:50-60 4.209e-1337107
Genome_Size_Range5:2-4 8.380e-103197
Genome_Size_Range5:4-6 3.403e-3164184
Genome_Size_Range9:2-3 1.061e-61120
Genome_Size_Range9:3-4 0.0023648277
Genome_Size_Range9:4-5 2.300e-113396
Genome_Size_Range9:5-6 6.360e-113188
Gram_Stain:Gram_Neg 6.886e-1767333
Motility:No 1.077e-63151
Motility:Yes 1.553e-954267
Optimal_temp.:20-30 0.004207547
Optimal_temp.:28-30 0.004207547
Oxygen_Req:Aerobic 5.392e-84185
Oxygen_Req:Anaerobic 0.00001411102
Oxygen_Req:Facultative 2.708e-2562201
Pathogenic_in:Human 0.000038940213
Pathogenic_in:No 0.000013311226
Pathogenic_in:Rodent 0.004207547
Shape:Rod 7.148e-1365347
Temp._range:Mesophilic 0.008973962473
Temp._range:Psychrophilic 0.000122969



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ORGANISMS CONTAINING AT MOST 1 GENES FROM THE GROUP:

Total number of orgs: 237
Effective number of orgs (counting one per cluster within 468 clusters): 186

Organism list
Homologs in each organism in the list
Features enriched in organism list


Follow (ncbi) link, when present, to find the set of organism features for each organism
Org ID  Org Name  # genes in group found in org  
WSUC273121 ncbi Wolinella succinogenes DSM 17401
WPIP955 Wolbachia pipientis1
UURE95667 Ureaplasma urealyticum serovar 130
UURE95664 Ureaplasma urealyticum serovar 100
UPAR505682 ncbi Ureaplasma parvum serovar 3 str. ATCC 278150
UMET351160 ncbi uncultured methanogenic archaeon RC-I1
TWHI218496 ncbi Tropheryma whipplei TW08/270
TWHI203267 ncbi Tropheryma whipplei Twist0
TVOL273116 ncbi Thermoplasma volcanium GSS11
TROS309801 ncbi Thermomicrobium roseum DSM 51591
TPEN368408 ncbi Thermofilum pendens Hrk 51
TPAL243276 ncbi Treponema pallidum pallidum Nichols0
TLET416591 ncbi Thermotoga lettingae TMO1
TKOD69014 ncbi Thermococcus kodakarensis KOD11
TDEN292415 ncbi Thiobacillus denitrificans ATCC 252591
TDEN243275 ncbi Treponema denticola ATCC 354050
TACI273075 ncbi Thermoplasma acidophilum DSM 17281
STOK273063 ncbi Sulfolobus tokodaii 70
STHE322159 ncbi Streptococcus thermophilus LMD-91
STHE299768 ncbi Streptococcus thermophilus CNRZ10661
STHE264199 ncbi Streptococcus thermophilus LMG 183111
SSUI391296 ncbi Streptococcus suis 98HAH331
SSUI391295 ncbi Streptococcus suis 05ZYH331
SSP387093 ncbi Sulfurovum sp. NBC37-11
SSOL273057 ncbi Sulfolobus solfataricus P20
SPYO370554 ncbi Streptococcus pyogenes MGAS107500
SPYO370553 ncbi Streptococcus pyogenes MGAS20960
SPYO370552 ncbi Streptococcus pyogenes MGAS102700
SPYO370551 ncbi Streptococcus pyogenes MGAS94290
SPYO319701 ncbi Streptococcus pyogenes MGAS61800
SPYO293653 ncbi Streptococcus pyogenes MGAS50050
SPYO286636 ncbi Streptococcus pyogenes MGAS103940
SPYO198466 ncbi Streptococcus pyogenes MGAS3150
SPYO193567 ncbi Streptococcus pyogenes SSI-10
SPYO186103 ncbi Streptococcus pyogenes MGAS82320
SPYO160490 ncbi Streptococcus pyogenes M1 GAS0
SPNE488221 ncbi Streptococcus pneumoniae 705851
SPNE487214 ncbi Streptococcus pneumoniae Hungary19A-61
SPNE487213 ncbi Streptococcus pneumoniae Taiwan19F-141
SPNE171101 ncbi Streptococcus pneumoniae R61
SPNE170187 ncbi Streptococcus pneumoniae G541
SPNE1313 Streptococcus pneumoniae1
SMUT210007 ncbi Streptococcus mutans UA1591
SMAR399550 ncbi Staphylothermus marinus F11
SGOR29390 Streptococcus gordonii Challis1
SERY405948 ncbi Saccharopolyspora erythraea NRRL 23381
SEPI176279 ncbi Staphylococcus epidermidis RP62A1
SAUR93062 ncbi Staphylococcus aureus aureus COL1
SAUR93061 ncbi Staphylococcus aureus aureus NCTC 83251
SAUR426430 ncbi Staphylococcus aureus aureus Newman1
SAUR418127 ncbi Staphylococcus aureus aureus Mu31
SAUR367830 Staphylococcus aureus aureus USA3001
SAUR359787 ncbi Staphylococcus aureus aureus JH11
SAUR359786 ncbi Staphylococcus aureus aureus JH91
SAUR282459 ncbi Staphylococcus aureus aureus MSSA4761
SAUR282458 ncbi Staphylococcus aureus aureus MRSA2521
SAUR273036 ncbi Staphylococcus aureus RF1221
SAUR196620 ncbi Staphylococcus aureus aureus MW21
SAUR158879 ncbi Staphylococcus aureus aureus N3151
SAUR158878 ncbi Staphylococcus aureus aureus Mu501
SACI330779 ncbi Sulfolobus acidocaldarius DSM 6390
RTYP257363 ncbi Rickettsia typhi Wilmington1
RSP357808 ncbi Roseiflexus sp. RS-11
RSAL288705 ncbi Renibacterium salmoninarum ATCC 332091
RRIC452659 ncbi Rickettsia rickettsii Iowa1
RRIC392021 ncbi Rickettsia rickettsii Sheila Smith1
RPRO272947 ncbi Rickettsia prowazekii Madrid E1
RMAS416276 ncbi Rickettsia massiliae MTU51
RFEL315456 ncbi Rickettsia felis URRWXCal21
RCON272944 ncbi Rickettsia conorii Malish 71
RCAS383372 ncbi Roseiflexus castenholzii DSM 139411
RCAN293613 ncbi Rickettsia canadensis McKiel1
RBEL391896 ncbi Rickettsia bellii OSU 85-3891
RBEL336407 ncbi Rickettsia bellii RML369-C1
RALB246199 Ruminococcus albus 80
RAKA293614 ncbi Rickettsia akari Hartford1
PTOR263820 ncbi Picrophilus torridus DSM 97900
PSP312153 ncbi Polynucleobacter necessarius asymbioticus QLW-P1DMWA-11
PSP296591 ncbi Polaromonas sp. JS6661
PSP117 Pirellula sp.1
PPEN278197 ncbi Pediococcus pentosaceus ATCC 257451
PNAP365044 ncbi Polaromonas naphthalenivorans CJ21
PMAR74547 ncbi Prochlorococcus marinus MIT 93131
PMAR59920 ncbi Prochlorococcus marinus NATL2A1
PMAR167555 ncbi Prochlorococcus marinus NATL1A1
PMAR167542 ncbi Prochlorococcus marinus MIT 95151
PMAR167540 Prochlorococcus marinus pastoris MED4ax1
PISL384616 ncbi Pyrobaculum islandicum DSM 41840
PHOR70601 ncbi Pyrococcus horikoshii OT31
PFUR186497 ncbi Pyrococcus furiosus DSM 36381
PAST100379 Onion yellows phytoplasma0
PARS340102 ncbi Pyrobaculum arsenaticum DSM 135141
PAER178306 ncbi Pyrobaculum aerophilum IM20
PABY272844 ncbi Pyrococcus abyssi GE51
OTSU357244 ncbi Orientia tsutsugamushi Boryong1
NSEN222891 ncbi Neorickettsia sennetsu Miyayama1
NPHA348780 ncbi Natronomonas pharaonis DSM 21600
NMEN374833 ncbi Neisseria meningitidis 0534421
NGON242231 ncbi Neisseria gonorrhoeae FA 10901
MXAN246197 ncbi Myxococcus xanthus DK 16221
MTHE349307 ncbi Methanosaeta thermophila PT1
MTHE187420 ncbi Methanothermobacter thermautotrophicus Delta H1
MSYN262723 ncbi Mycoplasma synoviae 530
MSTA339860 ncbi Methanosphaera stadtmanae DSM 30910
MSED399549 ncbi Metallosphaera sedula DSM 53480
MPUL272635 ncbi Mycoplasma pulmonis UAB CTIP0
MPNE272634 ncbi Mycoplasma pneumoniae M1290
MPEN272633 ncbi Mycoplasma penetrans HF-20
MMYC272632 ncbi Mycoplasma mycoides mycoides SC str. PG10
MMOB267748 ncbi Mycoplasma mobile 163K0
MMAZ192952 ncbi Methanosarcina mazei Go10
MMAR444158 ncbi Methanococcus maripaludis C61
MMAR426368 ncbi Methanococcus maripaludis C71
MMAR402880 ncbi Methanococcus maripaludis C51
MMAR368407 ncbi Methanoculleus marisnigri JR11
MMAR267377 ncbi Methanococcus maripaludis S21
MLEP272631 ncbi Mycobacterium leprae TN1
MLAB410358 ncbi Methanocorpusculum labreanum Z1
MKAN190192 ncbi Methanopyrus kandleri AV191
MJAN243232 ncbi Methanocaldococcus jannaschii DSM 26611
MHYO295358 ncbi Mycoplasma hyopneumoniae 2320
MHYO262722 ncbi Mycoplasma hyopneumoniae 74480
MHYO262719 ncbi Mycoplasma hyopneumoniae J0
MHUN323259 ncbi Methanospirillum hungatei JF-11
MGIL350054 ncbi Mycobacterium gilvum PYR-GCK1
MGEN243273 ncbi Mycoplasma genitalium G370
MFLO265311 ncbi Mesoplasma florum L10
MCAP340047 ncbi Mycoplasma capricolum capricolum ATCC 273430
MBUR259564 ncbi Methanococcoides burtonii DSM 62421
MBAR269797 ncbi Methanosarcina barkeri Fusaro0
MART243272 ncbi Mycoplasma arthritidis 158L3-10
MAEO419665 ncbi Methanococcus aeolicus Nankai-31
MACE188937 ncbi Methanosarcina acetivorans C2A0
LSAK314315 ncbi Lactobacillus sakei sakei 23K0
LREU557436 ncbi Lactobacillus reuteri DSM 200161
LMES203120 ncbi Leuconostoc mesenteroides mesenteroides ATCC 82931
LLAC272623 ncbi Lactococcus lactis lactis Il14031
LLAC272622 ncbi Lactococcus lactis cremoris SK111
LJOH257314 ncbi Lactobacillus johnsonii NCC 5330
LINT363253 ncbi Lawsonia intracellularis PHE/MN1-001
LHEL405566 ncbi Lactobacillus helveticus DPC 45711
LGAS324831 ncbi Lactobacillus gasseri ATCC 333231
LDEL390333 ncbi Lactobacillus delbrueckii bulgaricus ATCC 118421
LDEL321956 ncbi Lactobacillus delbrueckii bulgaricus ATCC BAA-3651
LCHO395495 ncbi Leptothrix cholodnii SP-61
LCAS321967 ncbi Lactobacillus casei ATCC 3341
LBRE387344 ncbi Lactobacillus brevis ATCC 3670
LBIF456481 ncbi Leptospira biflexa serovar Patoc strain Patoc 1 (Paris)1
LBIF355278 ncbi Leptospira biflexa serovar Patoc strain Patoc 1 (Ames)1
LACI272621 ncbi Lactobacillus acidophilus NCFM1
KRAD266940 ncbi Kineococcus radiotolerans SRS302160
JSP375286 ncbi Janthinobacterium sp. Marseille1
IHOS453591 ncbi Ignicoccus hospitalis KIN4/I1
HWAL362976 ncbi Haloquadratum walsbyi DSM 167900
HSP64091 ncbi Halobacterium sp. NRC-10
HSAL478009 ncbi Halobacterium salinarum R10
HPYL85963 ncbi Helicobacter pylori J990
HPYL357544 ncbi Helicobacter pylori HPAG10
HPY ncbi Helicobacter pylori 266950
HMUK485914 ncbi Halomicrobium mukohataei DSM 122860
HMAR272569 ncbi Haloarcula marismortui ATCC 430490
HHEP235279 ncbi Helicobacter hepaticus ATCC 514491
HBUT415426 ncbi Hyperthermus butylicus DSM 54561
HAUR316274 ncbi Herpetosiphon aurantiacus ATCC 237791
HACI382638 ncbi Helicobacter acinonychis Sheeba0
GVIO251221 ncbi Gloeobacter violaceus PCC 74211
GOXY290633 ncbi Gluconobacter oxydans 621H1
GBET391165 ncbi Granulibacter bethesdensis CGDNIH11
FTUL458234 ncbi Francisella tularensis holarctica FTNF002-001
FTUL418136 ncbi Francisella tularensis tularensis WY96-34181
FTUL401614 ncbi Francisella novicida U1121
FTUL393115 ncbi Francisella tularensis tularensis FSC1981
FTUL393011 ncbi Francisella tularensis holarctica OSU181
FTUL351581 Francisella tularensis holarctica FSC2001
FRANT ncbi Francisella tularensis tularensis SCHU S41
FPHI484022 ncbi Francisella philomiragia philomiragia ATCC 250171
FNUC190304 ncbi Fusobacterium nucleatum nucleatum ATCC 255860
FNOD381764 ncbi Fervidobacterium nodosum Rt17-B11
FMAG334413 ncbi Finegoldia magna ATCC 293281
FALN326424 ncbi Frankia alni ACN14a1
EFAE226185 ncbi Enterococcus faecalis V5831
ECAN269484 ncbi Ehrlichia canis Jake1
DVUL882 ncbi Desulfovibrio vulgaris Hildenborough1
DSP255470 ncbi Dehalococcoides sp. CBDB11
DSP216389 ncbi Dehalococcoides sp. BAV11
DRAD243230 ncbi Deinococcus radiodurans R11
DPSY177439 ncbi Desulfotalea psychrophila LSv540
DOLE96561 ncbi Desulfococcus oleovorans Hxd31
DHAF138119 ncbi Desulfitobacterium hafniense Y511
DGEO319795 ncbi Deinococcus geothermalis DSM 113001
DETH243164 ncbi Dehalococcoides ethenogenes 1951
CTRA471473 ncbi Chlamydia trachomatis L2b/UCH-1/proctitis0
CTRA471472 ncbi Chlamydia trachomatis 434/Bu0
CSUL444179 ncbi Candidatus Sulcia muelleri GWSS1
CPRO264201 ncbi Candidatus Protochlamydia amoebophila UWE250
CPNE182082 ncbi Chlamydophila pneumoniae TW-1830
CPNE138677 ncbi Chlamydophila pneumoniae J1380
CPNE115713 ncbi Chlamydophila pneumoniae CWL0290
CPNE115711 ncbi Chlamydophila pneumoniae AR390
CPHY357809 ncbi Clostridium phytofermentans ISDg1
CMUR243161 ncbi Chlamydia muridarum Nigg0
CMET456442 ncbi Candidatus Methanoregula boonei 6A81
CMAQ397948 ncbi Caldivirga maquilingensis IC-1670
CKOR374847 ncbi Candidatus Korarchaeum cryptofilum OPF81
CKLU431943 ncbi Clostridium kluyveri DSM 5551
CJEI306537 ncbi Corynebacterium jeikeium K4111
CGLU196627 ncbi Corynebacterium glutamicum ATCC 130321
CFEL264202 ncbi Chlamydophila felis Fe/C-560
CDIP257309 ncbi Corynebacterium diphtheriae NCTC 131291
CCAV227941 ncbi Chlamydophila caviae GPIC0
CBOT508765 ncbi Clostridium botulinum B str. Eklund 17B1
CACE272562 ncbi Clostridium acetobutylicum ATCC 8240
CABO218497 ncbi Chlamydophila abortus S26/30
BXEN266265 ncbi Burkholderia xenovorans LB4001
BTUR314724 ncbi Borrelia turicatae 91E1351
BSP107806 ncbi Buchnera aphidicola APS (Acyrthosiphon pisum)1
BLON206672 ncbi Bifidobacterium longum NCC27050
BHER314723 ncbi Borrelia hermsii DAH1
BGAR290434 ncbi Borrelia garinii PBi1
BCEN331272 ncbi Burkholderia cenocepacia HI24241
BCEN331271 ncbi Burkholderia cenocepacia AU 10541
BBUR224326 ncbi Borrelia burgdorferi B311
BAPH372461 ncbi Buchnera aphidicola Cc (Cinara cedri)1
BAPH198804 ncbi Buchnera aphidicola Sg (Schizaphis graminum)1
BAFZ390236 ncbi Borrelia afzelii PKo1
AYEL322098 ncbi Aster yellows witches-broom phytoplasma AYWB0
AURANTIMONAS Aurantimonas manganoxydans SI85-9A10
ASP1667 Arthrobacter sp.1
APHA212042 ncbi Anaplasma phagocytophilum HZ1
APER272557 ncbi Aeropyrum pernix K11
AORE350688 ncbi Alkaliphilus oremlandii OhILAs1
ANAE240017 Actinomyces oris MG11
AMET293826 ncbi Alkaliphilus metalliredigens QYMF1
ALAI441768 ncbi Acholeplasma laidlawii PG-8A1
AFUL224325 ncbi Archaeoglobus fulgidus DSM 43041
ABAC204669 ncbi Candidatus Koribacter versatilis Ellin3450
AAUR290340 ncbi Arthrobacter aurescens TC11


Names of the homologs of the genes in the group in each of these orgs
  G7200   G7199   G0-9461   EG11059   EG10274   EG10218   
WSUC273121 WS0368
WPIP955 WD_0954
UURE95667
UURE95664
UPAR505682
UMET351160 RCIX1538
TWHI218496
TWHI203267
TVOL273116 TVN1198
TROS309801 TRD_1777
TPEN368408 TPEN_0823
TPAL243276
TLET416591 TLET_1768
TKOD69014 TK1966
TDEN292415 TBD_1641
TDEN243275
TACI273075 TA0779
STOK273063
STHE322159 STER_1274
STHE299768 STR1298
STHE264199 STU1298
SSUI391296 SSU98_0717
SSUI391295 SSU05_0718
SSP387093 SUN_1615
SSOL273057
SPYO370554
SPYO370553
SPYO370552
SPYO370551
SPYO319701
SPYO293653
SPYO286636
SPYO198466
SPYO193567
SPYO186103
SPYO160490
SPNE488221 SP70585_1053
SPNE487214 SPH_1117
SPNE487213 SPT_1067
SPNE171101 SPR0918
SPNE170187 SPN07075
SPNE1313 SPJ_0954
SMUT210007 SMU_989
SMAR399550 SMAR_0554
SGOR29390 SGO_1206
SERY405948 SACE_2049
SEPI176279 SERP1288
SAUR93062 SACOL1773
SAUR93061 SAOUHSC_01833
SAUR426430 NWMN_1617
SAUR418127 SAHV_1710
SAUR367830 SAUSA300_1670
SAUR359787 SAURJH1_1814
SAUR359786 SAURJH9_1779
SAUR282459 SAS1650
SAUR282458 SAR1801
SAUR273036 SAB1582
SAUR196620 MW1666
SAUR158879 SA1545
SAUR158878 SAV1724
SACI330779
RTYP257363 RT0306
RSP357808 ROSERS_0271
RSAL288705 RSAL33209_1046
RRIC452659 RRIOWA_0513
RRIC392021 A1G_02440
RPRO272947 RP316
RMAS416276 RMA_0439
RFEL315456 RF_0512
RCON272944 RC0430
RCAS383372 RCAS_0263
RCAN293613 A1E_03960
RBEL391896 A1I_05230
RBEL336407 RBE_0820
RALB246199
RAKA293614 A1C_02350
PTOR263820
PSP312153 PNUC_0402
PSP296591 BPRO_2343
PSP117 RB9795
PPEN278197 PEPE_0130
PNAP365044 PNAP_2424
PMAR74547 PMT1431
PMAR59920 PMN2A_1252
PMAR167555 NATL1_21221
PMAR167542 P9515ORF_1926
PMAR167540 PMM1654
PISL384616
PHOR70601 PH1387
PFUR186497 PF1394
PAST100379
PARS340102 PARS_2266
PAER178306
PABY272844 PAB0514
OTSU357244 OTBS_1798
NSEN222891 NSE_0260
NPHA348780
NMEN374833 NMCC_1926
NGON242231 NGO1763
MXAN246197 MXAN_4768
MTHE349307 MTHE_1224
MTHE187420 MTH970
MSYN262723
MSTA339860
MSED399549
MPUL272635
MPNE272634
MPEN272633
MMYC272632
MMOB267748
MMAZ192952
MMAR444158 MMARC6_1082
MMAR426368 MMARC7_0835
MMAR402880 MMARC5_1821
MMAR368407 MEMAR_1850
MMAR267377 MMP1588
MLEP272631 ML1692
MLAB410358 MLAB_1543
MKAN190192 MK0297
MJAN243232 MJ_1018
MHYO295358
MHYO262722
MHYO262719
MHUN323259 MHUN_3063
MGIL350054 MFLV_4234
MGEN243273
MFLO265311
MCAP340047
MBUR259564 MBUR_0379
MBAR269797
MART243272
MAEO419665 MAEO_0567
MACE188937
LSAK314315
LREU557436 LREU_0618
LMES203120 LEUM_1940
LLAC272623 L66199
LLAC272622 LACR_1731
LJOH257314
LINT363253 LI0951
LHEL405566 LHV_0911
LGAS324831 LGAS_1077
LDEL390333 LDB1147
LDEL321956 LBUL_1067
LCHO395495 LCHO_2054
LCAS321967 LSEI_0101
LBRE387344
LBIF456481 LEPBI_I0942
LBIF355278 LBF_0909
LACI272621 LBA0857
KRAD266940
JSP375286 MMA_2160
IHOS453591 IGNI_0383
HWAL362976
HSP64091
HSAL478009
HPYL85963
HPYL357544
HPY
HMUK485914
HMAR272569
HHEP235279 HH_1874
HBUT415426 HBUT_0860
HAUR316274 HAUR_1084
HACI382638
GVIO251221 GLR2139
GOXY290633 GOX0878
GBET391165 GBCGDNIH1_2081
FTUL458234 FTA_1199
FTUL418136 FTW_0512
FTUL401614 FTN_1343
FTUL393115 FTF1183C
FTUL393011 FTH_0765
FTUL351581 FTL_0764
FRANT FT.1184C
FPHI484022 FPHI_1346
FNUC190304
FNOD381764 FNOD_0103
FMAG334413 FMG_0318
FALN326424 FRAAL5848
EFAE226185 EF_1183
ECAN269484 ECAJ_0944
DVUL882 DVU_3048
DSP255470 CBDBA934
DSP216389 DEHABAV1_0863
DRAD243230 DR_1672
DPSY177439
DOLE96561 DOLE_2220
DHAF138119 DSY2500
DGEO319795 DGEO_1456
DETH243164 DET_0972
CTRA471473
CTRA471472
CSUL444179 SMGWSS_202
CPRO264201
CPNE182082
CPNE138677
CPNE115713
CPNE115711
CPHY357809 CPHY_0892
CMUR243161
CMET456442 MBOO_2164
CMAQ397948
CKOR374847 KCR_1548
CKLU431943 CKL_3207
CJEI306537 JK1291
CGLU196627 CG1451
CFEL264202
CDIP257309 DIP1104
CCAV227941
CBOT508765 CLL_A2485
CACE272562
CABO218497
BXEN266265 BXE_B1896
BTUR314724 BT0740
BSP107806 BU092
BLON206672
BHER314723 BH0740
BGAR290434 BG0761
BCEN331272 BCEN2424_1125
BCEN331271 BCEN_0645
BBUR224326 BB_0740
BAPH372461 BCC_056
BAPH198804 BUSG084
BAFZ390236 BAPKO_0783
AYEL322098
AURANTIMONAS
ASP1667 ARTH_2536
APHA212042 APH_1346
APER272557 APE2507
AORE350688 CLOS_1162
ANAE240017 ANA_2434
AMET293826 AMET_3198
ALAI441768 ACL_0788
AFUL224325 AF_1779
ABAC204669
AAUR290340 AAUR_PTC20110


Organism features enriched in list (features available for 223 out of the 237 orgs in the list)
Feature    Pvalue       Num occurrences in list  Total num occurrences  
Arrangment:Clusters 0.00019011417
Arrangment:Singles 0.005029796286
Disease:Pharyngitis 0.000423588
Disease:Toxic-shock_syndrome_and_staphylococcal_scarlet_fever 0.00040801011
Disease:Tularemia 0.007962455
Disease:Wide_range_of_infections 0.00002191111
Disease:bronchitis_and_pneumonitis 0.000423588
Endospores:No 8.716e-11117211
Endospores:Yes 0.0000879853
GC_Content_Range4:0-40 1.596e-16128213
GC_Content_Range4:40-60 0.000091965224
GC_Content_Range4:60-100 1.356e-730145
GC_Content_Range7:0-30 0.00106792847
GC_Content_Range7:30-40 5.613e-12100166
GC_Content_Range7:50-60 0.000024723107
GC_Content_Range7:60-70 2.316e-727134
Genome_Size_Range5:0-2 1.132e-32121155
Genome_Size_Range5:4-6 1.430e-2220184
Genome_Size_Range5:6-10 0.0002048747
Genome_Size_Range9:0-1 3.355e-82427
Genome_Size_Range9:1-2 8.409e-2397128
Genome_Size_Range9:2-3 0.003400158120
Genome_Size_Range9:3-4 0.00060251777
Genome_Size_Range9:4-5 2.285e-101196
Genome_Size_Range9:5-6 2.370e-10988
Genome_Size_Range9:6-8 0.0000803438
Gram_Stain:Gram_Neg 1.770e-1385333
Gram_Stain:Gram_Pos 0.001407772150
Habitat:Host-associated 0.001853894206
Habitat:Multiple 0.000064248178
Habitat:Specialized 0.00903132853
Motility:No 2.992e-886151
Motility:Yes 8.217e-1165267
Optimal_temp.:- 0.007373186257
Optimal_temp.:25-30 0.0010812119
Optimal_temp.:30-37 0.00256161318
Oxygen_Req:Aerobic 0.001088555185
Oxygen_Req:Anaerobic 0.001396252102
Pathogenic_in:Swine 0.007962455
Shape:Coccus 1.038e-136282
Shape:Irregular_coccus 5.438e-81717
Shape:Rod 2.293e-2277347
Shape:Sphere 0.00003681619
Temp._range:Hyperthermophilic 0.00006921823



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ORGANISMS ENRICHED FOR GROUP:




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ORGANISMS DEPLETED FOR GROUP:




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PHYLOGENETIC PROFILE SIMILARITY WITH KNOWN PATHWAYS:

Pathways or complexes with absolute value of Pearson coefficient with respect to candidate larger than 0.4 are listed below
The candidate is assumed to exist in orgs listed in section List of organisms containing most genes from the group


Pathway or complex  # Orgs containing it  # of those orgs also containing candidate  Pearson Coeff  
GALACTITOLCAT-PWY (galactitol degradation)73480.6232
PWY-5861 (superpathway of demethylmenaquinone-8 biosynthesis)50380.6006
PWY0-1315 (L-lactaldehyde degradation (anaerobic))45340.5634
AST-PWY (arginine degradation II (AST pathway))120570.5549
HEXITOLDEGSUPER-PWY (superpathway of hexitol degradation)37280.5083
TREDEGLOW-PWY (trehalose degradation I (low osmolarity))121530.5007
PWY0-1355 (formate to trimethylamine N-oxide electron transfer)31250.4987
SORBDEG-PWY (sorbitol degradation II)53330.4881
LYXMET-PWY (L-lyxose degradation)87430.4821
RHAMCAT-PWY (rhamnose degradation)91440.4810
PWY0-1241 (ADP-L-glycero-β-D-manno-heptose biosynthesis)218700.4782
PWY-46 (putrescine biosynthesis III)138550.4777
THREONINE-DEG2-PWY (threonine degradation II)214690.4745
LPSSYN-PWY (superpathway of lipopolysaccharide biosynthesis)91430.4667
MANNIDEG-PWY (mannitol degradation I)99450.4659
COBALSYN-PWY (adenosylcobalamin salvage from cobinamide I)195640.4551
PWY-5148 (acyl-CoA hydrolysis)227690.4527
PWY0-1356 (formate to dimethyl sulfoxide electron transfer)22190.4514
ARABCAT-PWY (L-arabinose degradation I)128500.4427
FUC-RHAMCAT-PWY (superpathway of fucose and rhamnose degradation)19170.4358
LACTOSEUTIL-PWY (lactose degradation II)53300.4338
GLYCOCAT-PWY (glycogen degradation I)246700.4336
GLCMANNANAUT-PWY (superpathway of N-acetylglucosamine, N-acetylmannosamine and N-acetylneuraminate degradation)134500.4269
LIPA-CORESYN-PWY (Lipid A-core biosynthesis)176580.4257
PWY0-1324 (N-acetylneuraminate and N-acetylmannosamine degradation)135500.4244
PWY-5833 (CDP-3,6-dideoxyhexose biosynthesis)14140.4228
ECASYN-PWY (enterobacterial common antigen biosynthesis)191600.4189
PWY0-1182 (trehalose degradation II (trehalase))70340.4162
PWY-6196 (serine racemization)102420.4147
GLUTDEG-PWY (glutamate degradation II)194600.4133
PWY0-1295 (pyrimidine ribonucleosides degradation I)239670.4130
GLUTAMINDEG-PWY (glutamine degradation I)191590.4079
PWY-6507 (5-dehydro-4-deoxy-D-glucuronate degradation)76350.4065
PWY-5921 (L-glutamine biosynthesis II (tRNA-dependent))4012-.4609



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PAIRWISE GENOME CONTEXT SCORE MATRIX:

  G7199   G0-9461   EG11059   EG10274   EG10218   
G72000.9992270.9989160.9988630.9991430.998558
G71990.9988650.9989060.9992120.998663
G0-94610.9988750.9989280.998988
EG110590.9987560.999136
EG102740.998681
EG10218



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PAIRWISE BLAST SCORES:

  G7200   G7199   G0-9461   EG11059   EG10274   EG10218   
G72000.0f0-----
G7199-0.0f0----
G0-9461--0.0f0---
EG11059---0.0f0--
EG10274----0.0f0-
EG10218-----0.0f0



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PATHWAYS OR PROTEIN COMPLEX MATCHES IN TARGET ORG:

For each case, all genes involved in the pathway or complex are listed. For each gene we list: a tag indicating whether the gene is part of the candidate list or not, the average and the minimum scores of the gene to the candidate list, the gene name, and its product names.



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GENOME CONTEXT INFORMATION:

Each row corresponds to a replicon in an organism, each column to a gene in the candidate. The second column indicates whether the organims was included in the list used to compute the genome context scores or not. Some organisms are not included because they are phylogenetically too similar to others already in the list.
The number in the matrix indicate the position of the homolog of the gene in the replicon. All numbers are relative to the smaller one, which is assigned a position of zero. Two columns with the same number indicate that the two genes matched the same gene in that organism.

Genome browser links for gene clusters

The links below opens a genome browser BioCyc page for each cluster of genes in the target genome. These pages shows the central gene of the cluster in the target genome and its best homolog in the reference genomes, for the genomes that contain homologs for at least 75% of the genes in the group. Only one genome per phylogenetic cluster of organisms is shown, to keep the list smaller.

EG10274 G7199 G7200 (centered at G7199)
EG10218 (centered at EG10218)
EG11059 G0-9461 (centered at G0-9461)


ORG:REPLICON:CIRC?\GENE  IN REF LIST  G7200   G7199   G0-9461   EG11059   EG10274   EG10218   
71/623216/623354/623391/623294/62392/623
AAEO224324:0:Tyes-8890810701-
AAUR290340:0:Tyes--0---
AAVE397945:0:Tyes-11701753-22760
ABAU360910:0:Tyes-17371977-0-
ABOR393595:0:Tyes-1413506470639
ABUT367737:0:Tyes---0268-
ACAU438753:0:Tyes--035964529-
ACEL351607:0:Tyes--01301--
ACRY349163:8:Tyes--11321900-
ADEH290397:0:Tyes--023401501-
AEHR187272:0:Tyes---01429
AFER243159:0:Tyes--11140154-
AFUL224325:0:Tyes--0---
AHYD196024:0:Tyes02776976828763
ALAI441768:0:Tyes---0--
AMAR234826:0:Tyes---6790-
AMAR329726:9:Tyes-200802152--
AMET293826:0:Tyes---0--
ANAE240017:0:Tyes---0--
AORE350688:0:Tyes---0--
APER272557:0:Tyes--0---
APHA212042:0:Tyes---0--
APLE416269:0:Tyes-0-363195-
APLE434271:0:Tno-0-370204-
ASAL382245:5:Tyes4211561550150
ASP1667:3:Tyes--0---
ASP232721:2:Tyes-12292086-02140
ASP62928:0:Tyes-0--147-
ASP62977:0:Tyes-20901668-0-
ASP76114:2:Tyes-12171230-4080
AVAR240292:3:Tyes--1520--
BABO262698:0:Tno---0--
BABO262698:1:Tno--0-458-
BAFZ390236:2:Fyes-0----
BAMB339670:2:Tno----0-
BAMB339670:3:Tno-0----
BAMB398577:2:Tno--953-0-
BAMB398577:3:Tno-0----
BAMY326423:0:Tyes--9875250-
BANT260799:0:Tno--22725350-
BANT261594:2:Tno--22825060-
BANT568206:2:Tyes--244602685-
BANT592021:2:Tno--23726760-
BAPH198804:0:Tyes----0-
BAPH372461:0:Tyes----0-
BBAC264462:0:Tyes--8910--
BBAC360095:0:Tyes---0157-
BBRO257310:0:Tyes-427735-0-
BBUR224326:21:Fno-0----
BCAN483179:0:Tno---0--
BCAN483179:1:Tno--0-476-
BCEN331271:2:Tno----0-
BCEN331272:3:Tyes----0-
BCER226900:1:Tyes---11670-
BCER288681:0:Tno---11040-
BCER315749:1:Tyes--23614630-
BCER405917:1:Tyes--22510980-
BCER572264:1:Tno---26510-
BCIC186490:0:Tyes--1-0-
BCLA66692:0:Tyes--0373--
BFRA272559:1:Tyes-08728284-
BFRA295405:0:Tno-0141365138-
BGAR290434:2:Fyes-0----
BHAL272558:0:Tyes--0799--
BHEN283166:0:Tyes---10780-
BHER314723:0:Fyes-0----
BJAP224911:0:Fyes--75140274-
BLIC279010:0:Tyes--11856520-
BMAL243160:1:Tno-2116--0-
BMAL320388:1:Tno-897--0-
BMAL320389:1:Tyes-1152--0-
BMEL224914:0:Tno---0--
BMEL224914:1:Tno--0-1644-
BMEL359391:0:Tno---0--
BMEL359391:1:Tno--0-446-
BOVI236:0:Tyes---0--
BOVI236:1:Tyes--0-416-
BPAR257311:0:Tno-417692-0-
BPER257313:0:Tyes--0-2050-
BPET94624:0:Tyes-3160-1362-
BPSE272560:1:Tyes-0--2444-
BPSE320372:1:Tno-0--2807-
BPSE320373:1:Tno-0--2684-
BPUM315750:0:Tyes--9705200-
BQUI283165:0:Tyes---7950-
BSP107806:2:Tyes----0-
BSP36773:2:Tyes-0--1011-
BSP376:0:Tyes--55892760-
BSUB:0:Tyes--6590--
BSUI204722:0:Tyes---0--
BSUI204722:1:Tyes--0-471-
BSUI470137:0:Tno--2720--
BSUI470137:1:Tno----0-
BTHA271848:1:Tno-0--1695-
BTHE226186:0:Tyes-0111387108-
BTHU281309:1:Tno---11400-
BTHU412694:1:Tno---22660-
BTRI382640:1:Tyes---14240-
BTUR314724:0:Fyes-0----
BVIE269482:5:Tyes----0-
BVIE269482:7:Tyes-0----
BWEI315730:4:Tyes--25424130-
BXEN266265:1:Tyes--0---
CAULO:0:Tyes-499-03519-
CBEI290402:0:Tyes---02133-
CBLO203907:0:Tyes--0-1-
CBLO291272:0:Tno--0-1-
CBOT36826:1:Tno--02000--
CBOT441770:0:Tyes--01982--
CBOT441771:0:Tno--01841--
CBOT441772:1:Tno--01953--
CBOT498213:1:Tno--02028--
CBOT508765:1:Tyes---0--
CBOT515621:2:Tyes--02204--
CBOT536232:0:Tno--02205--
CBUR227377:1:Tyes--12633630381
CBUR360115:1:Tno--13244320411
CBUR434922:2:Tno--08581471878
CCHL340177:0:Tyes--110501390-
CCON360104:2:Tyes-907-0--
CCUR360105:0:Tyes-240938--
CDES477974:0:Tyes--0897613-
CDIF272563:1:Tyes--02267201-
CDIP257309:0:Tyes--0---
CEFF196164:0:Fyes--11730--
CFET360106:0:Tyes-0-237--
CGLU196627:0:Tyes--0---
CHOM360107:1:Tyes-34-0--
CHUT269798:0:Tyes-495-0--
CHYD246194:0:Tyes--14830280-
CJAP155077:0:Tyes-16131584-0-
CJEI306537:0:Tyes--0---
CJEJ192222:0:Tyes-243-0--
CJEJ195099:0:Tno-232-0--
CJEJ354242:2:Tyes-3750136--
CJEJ360109:0:Tyes-0443292--
CJEJ407148:0:Tno-3940141--
CKLU431943:1:Tyes---0--
CKOR374847:0:Tyes--0---
CMET456442:0:Tyes--0---
CMIC31964:2:Tyes--12110--
CMIC443906:2:Tyes--2020--
CNOV386415:0:Tyes--13680--
CPEL335992:0:Tyes---0151-
CPER195102:1:Tyes--01385--
CPER195103:0:Tno--01622--
CPER289380:3:Tyes--01353--
CPHY357809:0:Tyes--0---
CPSY167879:0:Tyes1086570
CRUT413404:0:Tyes--0244295-
CSAL290398:0:Tyes-257910-0-
CSP501479:5:Fyes--0---
CSP501479:7:Fyes---0--
CSP501479:8:Fyes-0--1860-
CSP78:2:Tyes-0363737884233-
CSUL444179:0:Tyes---0--
CTEP194439:0:Tyes---0187-
CTET212717:0:Tyes--01473--
CVES412965:0:Tyes--0208256-
CVIO243365:0:Tyes-0-8291497576
DARO159087:0:Tyes-1984--11550
DDES207559:0:Tyes--14450--
DETH243164:0:Tyes---0--
DGEO319795:1:Tyes-0----
DHAF138119:0:Tyes---0--
DNOD246195:0:Tyes-0--73-
DOLE96561:0:Tyes---0--
DRAD243230:3:Tyes-0----
DRED349161:0:Tyes--019472077-
DSHI398580:5:Tyes-08683129876-
DSP216389:0:Tyes---0--
DSP255470:0:Tno---0--
DVUL882:1:Tyes---0--
ECAN269484:0:Tyes---0--
ECAR218491:0:Tyes11106590
ECHA205920:0:Tyes---0826-
ECOL199310:0:Tno1096580
ECOL316407:0:Tno11106590
ECOL331111:6:Tno121175100
ECOL362663:0:Tno11106590
ECOL364106:1:Tno11106590
ECOL405955:2:Tyes11106590
ECOL409438:6:Tyes11106590
ECOL413997:0:Tno11106590
ECOL439855:4:Tno121175100
ECOL469008:0:Tno0156211
ECOL481805:0:Tno0156211
ECOL585034:0:Tno11106590
ECOL585035:0:Tno11106590
ECOL585055:0:Tno11106590
ECOL585056:2:Tno11106590
ECOL585057:0:Tno11106590
ECOL585397:0:Tno11106590
ECOL83334:0:Tno11106590
ECOLI:0:Tno11106590
ECOO157:0:Tno11106590
EFAE226185:3:Tyes---0--
EFER585054:1:Tyes0156211
ELIT314225:0:Tyes--01111973-
ERUM254945:0:Tyes---7560-
ERUM302409:0:Tno---7520-
ESP42895:1:Tyes1096580
FALN326424:0:Tyes--0---
FJOH376686:0:Tyes-368613832170-
FMAG334413:1:Tyes---0--
FNOD381764:0:Tyes--0---
FPHI484022:1:Tyes-0----
FRANT:0:Tno-0----
FSP106370:0:Tyes--33750--
FSP1855:0:Tyes--05399--
FSUC59374:0:Tyes--29190--
FTUL351581:0:Tno-0----
FTUL393011:0:Tno-0----
FTUL393115:0:Tyes-0----
FTUL401614:0:Tyes-0----
FTUL418136:0:Tno-0----
FTUL458234:0:Tno-0----
GBET391165:0:Tyes---0--
GFOR411154:0:Tyes-0-28502882-
GKAU235909:1:Tyes--14634710-
GMET269799:1:Tyes--178801005-
GOXY290633:5:Tyes---0--
GSUL243231:0:Tyes--0-405-
GTHE420246:1:Tyes--14684380-
GURA351605:0:Tyes--27990827-
GVIO251221:0:Tyes--0---
HARS204773:0:Tyes--2006--0
HAUR316274:2:Tyes--0---
HBUT415426:0:Tyes--0---
HCHE349521:0:Tyes-23250-3976-
HDUC233412:0:Tyes-689-0211-
HHAL349124:0:Tyes---18050-
HHEP235279:0:Tyes---0--
HINF281310:0:Tyes-9070996908-
HINF374930:0:Tyes-8020-801-
HINF71421:0:Tno-104-0102-
HMOD498761:0:Tyes--01120--
HNEP81032:0:Tyes-3184-02064-
HSOM205914:1:Tyes-0-2161-
HSOM228400:0:Tno-0-3531-
IHOS453591:0:Tyes--0---
ILOI283942:0:Tyes986570
JSP290400:1:Tyes-27-01554-
JSP375286:0:Tyes-----0
KPNE272620:2:Tyes171665150
LACI272621:0:Tyes---0--
LBIF355278:2:Tyes-0----
LBIF456481:2:Tno-0----
LBOR355276:1:Tyes-20690---
LBOR355277:1:Tno-02059---
LCAS321967:1:Tyes---0--
LCHO395495:0:Tyes-0----
LDEL321956:0:Tyes--0---
LDEL390333:0:Tyes--0---
LGAS324831:0:Tyes---0--
LHEL405566:0:Tyes---0--
LINN272626:1:Tno---0858-
LINT189518:1:Tyes-24440---
LINT267671:1:Tno-01870---
LINT363253:3:Tyes---0--
LLAC272622:5:Tyes---0--
LLAC272623:0:Tyes---0--
LMES203120:1:Tyes---0--
LMON169963:0:Tno---0797-
LMON265669:0:Tyes---0770-
LPLA220668:0:Tyes--01529--
LPNE272624:0:Tno-61301382--
LPNE297245:1:Fno-53801272--
LPNE297246:1:Fyes-51001278--
LPNE400673:0:Tno-01390793--
LREU557436:0:Tyes---0--
LSPH444177:1:Tyes---01128-
LWEL386043:0:Tyes---0764-
LXYL281090:0:Tyes--8110--
MABS561007:1:Tyes--29720--
MAEO419665:0:Tyes--0---
MAER449447:0:Tyes-33001210--
MAQU351348:2:Tyes-0596-1961-
MAVI243243:0:Tyes--34070--
MBOV233413:0:Tno--0718--
MBOV410289:0:Tno--0752--
MBUR259564:0:Tyes---0--
MCAP243233:0:Tyes---0780-
MEXT419610:0:Tyes--23422920-
MFLA265072:0:Tyes-0--502304
MGIL350054:3:Tyes--0---
MHUN323259:0:Tyes--0---
MJAN243232:2:Tyes--0---
MKAN190192:0:Tyes--0---
MLAB410358:0:Tyes--0---
MLEP272631:0:Tyes--0---
MLOT266835:2:Tyes--03871329-
MMAG342108:0:Tyes--260601521-
MMAR267377:0:Tyes--0---
MMAR368407:0:Tyes--0---
MMAR394221:0:Tyes-0-354537-
MMAR402880:1:Tyes--0---
MMAR426368:0:Tyes--0---
MMAR444158:0:Tyes--0---
MPET420662:1:Tyes-1320--01507
MSME246196:0:Tyes--03690--
MSP164756:1:Tno--03009--
MSP164757:0:Tno--03380--
MSP189918:2:Tyes--03050--
MSP266779:3:Tyes--0225780-
MSP400668:0:Tyes-11330-1999-
MSP409:2:Tyes--40899180-
MSUC221988:0:Tyes-505-0504-
MTBCDC:0:Tno--0780--
MTBRV:0:Tno--0715--
MTHE187420:0:Tyes--0---
MTHE264732:0:Tyes--01020906-
MTHE349307:0:Tyes--0---
MTUB336982:0:Tno--0727--
MTUB419947:0:Tyes--0732--
MVAN350058:0:Tyes--03365--
MXAN246197:0:Tyes----0-
NARO279238:0:Tyes--12940--
NEUR228410:0:Tyes----9640
NEUT335283:2:Tyes----0679
NFAR247156:2:Tyes--39520--
NGON242231:0:Tyes----0-
NHAM323097:2:Tyes--104034340-
NMEN122586:0:Tno-506--0-
NMEN122587:0:Tyes-868--0-
NMEN272831:0:Tno-443--0-
NMEN374833:0:Tno----0-
NMUL323848:3:Tyes-843--0-
NOCE323261:1:Tyes---0739-
NSEN222891:0:Tyes---0--
NSP103690:6:Tyes--01813--
NSP35761:1:Tyes--30580--
NSP387092:0:Tyes-1302-1790-
NWIN323098:0:Tyes--296627920-
OANT439375:4:Tyes---0--
OANT439375:5:Tyes--497-0-
OCAR504832:0:Tyes--28760219-
OIHE221109:0:Tyes---4050-
OTSU357244:0:Fyes---0--
PABY272844:0:Tyes--0---
PACN267747:0:Tyes--19300--
PAER208963:0:Tyes-021963721974-
PAER208964:0:Tno-210801760234-
PARC259536:0:Tyes-14380-1638-
PARS340102:0:Tyes--0---
PATL342610:0:Tyes180318021782178118010
PCAR338963:0:Tyes---0765-
PCRY335284:1:Tyes-16720-1884-
PDIS435591:0:Tyes-65504432-
PENT384676:0:Tyes-021422062029-
PFLU205922:0:Tyes-2219200502340-
PFLU216595:1:Tyes-266702550283-
PFLU220664:0:Tyes-25601903180-
PFUR186497:0:Tyes--0---
PGIN242619:0:Tyes-137256401032-
PHAL326442:1:Tyes011421140113911411133
PHOR70601:0:Tyes--0---
PING357804:0:Tyes1094262423250
PINT246198:1:Tyes---16380-
PLUM243265:0:Fyes171665150
PLUT319225:0:Tyes---1460-
PMAR146891:0:Tyes--0308--
PMAR167539:0:Tyes--0387--
PMAR167540:0:Tyes---0--
PMAR167542:0:Tyes---0--
PMAR167546:0:Tyes--0309--
PMAR167555:0:Tyes---0--
PMAR59920:0:Tno---0--
PMAR74546:0:Tyes--0304--
PMAR74547:0:Tyes--0---
PMAR93060:0:Tyes--0352--
PMEN399739:0:Tyes-13480824575-
PMOB403833:0:Tyes--0-788-
PMUL272843:1:Tyes-0-1481-
PNAP365044:8:Tyes-0----
PPEN278197:0:Tyes---0--
PPRO298386:2:Tyes4496580
PPUT160488:0:Tno-03722462415-
PPUT351746:0:Tyes-2273191720660-
PPUT76869:0:Tno-03271942422-
PRUM264731:0:Tyes---02445-
PSP117:0:Tyes---0--
PSP296591:2:Tyes-0----
PSP312153:0:Tyes----0-
PSP56811:2:Tyes-0234---
PSTU379731:0:Tyes-891420116-
PSYR205918:0:Tyes-20951740366-
PSYR223283:2:Tyes-03792151569-
PTHE370438:0:Tyes--013161775-
RAKA293614:0:Fyes---0--
RBEL336407:0:Tyes---0--
RBEL391896:0:Fno---0--
RCAN293613:0:Fyes---0--
RCAS383372:0:Tyes--0---
RCON272944:0:Tno---0--
RDEN375451:4:Tyes-71601053492-
RETL347834:5:Tyes-30113039560-
REUT264198:2:Tyes--0---
REUT264198:3:Tyes-0--896-
REUT381666:1:Tyes--0---
REUT381666:2:Tyes-0--1033-
RFEL315456:2:Tyes---0--
RFER338969:1:Tyes-1919133-0951
RLEG216596:6:Tyes-34812946070-
RMAS416276:1:Tyes---0--
RMET266264:1:Tyes--0---
RMET266264:2:Tyes-0--537-
RPAL258594:0:Tyes---0200-
RPAL316055:0:Tyes---2280-
RPAL316056:0:Tyes--9230112-
RPAL316057:0:Tyes---2770-
RPAL316058:0:Tyes---0277-
RPOM246200:0:Tyes----0-
RPOM246200:1:Tyes-0-158--
RPRO272947:0:Tyes---0--
RRIC392021:0:Fno---0--
RRIC452659:0:Tyes---0--
RRUB269796:1:Tyes---7740-
RSAL288705:0:Tyes--0---
RSOL267608:0:Tyes----0-
RSOL267608:1:Tyes-0----
RSP101510:3:Fyes--21940--
RSP357808:0:Tyes--0---
RSPH272943:3:Tyes----0-
RSPH272943:4:Tyes-0-498--
RSPH349101:1:Tno----0-
RSPH349101:2:Tno-2518-0--
RSPH349102:4:Tyes----0-
RSPH349102:5:Tyes-131024--
RTYP257363:0:Tno---0--
RXYL266117:0:Tyes--0263--
SACI56780:0:Tyes---14410-
SAGA205921:0:Tno--6640--
SAGA208435:0:Tno--7440--
SAGA211110:0:Tyes--7540--
SALA317655:1:Tyes--02127--
SARE391037:0:Tyes--02730--
SAUR158878:1:Tno--0---
SAUR158879:1:Tno--0---
SAUR196620:0:Tno--0---
SAUR273036:0:Tno--0---
SAUR282458:0:Tno--0---
SAUR282459:0:Tno--0---
SAUR359786:1:Tno--0---
SAUR359787:1:Tno--0---
SAUR367830:3:Tno--0---
SAUR418127:0:Tyes--0---
SAUR426430:0:Tno--0---
SAUR93061:0:Fno--0---
SAUR93062:1:Tno--0---
SAVE227882:1:Fyes--02718--
SBAL399599:3:Tyes975460
SBAL402882:1:Tno975460
SBOY300268:1:Tyes11106590
SCO:2:Fyes--29080--
SDEG203122:0:Tyes-481162-0-
SDEN318161:0:Tyes5902317
SDYS300267:1:Tyes11106590
SELO269084:0:Tyes-033493--
SENT209261:0:Tno011011216
SENT220341:0:Tno161565140
SENT295319:0:Tno011011216
SENT321314:2:Tno161565140
SENT454169:2:Tno161565140
SEPI176279:1:Tyes--0---
SEPI176280:0:Tno--3270--
SERY405948:0:Tyes--0---
SFLE198214:0:Tyes11106590
SFLE373384:0:Tno11106590
SFUM335543:0:Tyes--670--
SGLO343509:3:Tyes9-6580
SGOR29390:0:Tyes---0--
SHAE279808:0:Tyes--0317--
SHAL458817:0:Tyes171554140
SHIGELLA:0:Tno11106590
SLAC55218:1:Fyes-117714078610-
SLOI323850:0:Tyes114112541110
SMAR399550:0:Tyes--0---
SMED366394:2:Tyes-0----
SMED366394:3:Tyes--010151276-
SMEL266834:1:Tyes-0----
SMEL266834:2:Tyes--252731230-
SMUT210007:0:Tyes---0--
SONE211586:1:Tyes1075460
SPEA398579:0:Tno1030078114
SPNE1313:0:Tyes---0--
SPNE170187:0:Tyes---0--
SPNE171101:0:Tno---0--
SPNE487213:0:Tno---0--
SPNE487214:0:Tno---0--
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