CANDIDATE ID: 480

CANDIDATE ID: 480

NUMBER OF GENES: 6
AVERAGE SCORE:    9.9916000e-1 (range=[0.0,1.0])
AVERAGE MINIMUM BLAST P-VAL:    1.0000000e+0

Gene List
List of organisms containing most genes from the group
    Phylogenetic tree highlighting these organisms (opens new page)
List of organisms containing very few or no genes from the group
List of organisms enriched for group
List of organisms depleted for group
Phylogenetic profile similarity with known pathways
Pairwise genome context scores
Pairwise Blast scores
Pathway or protein complex matches in target organism
Genome context matrix
    Genes and their orthologs in genome browser BioCyc pages



GENE LIST:

- G6463 (clpS) (b0881)
   Products of gene:
     - G6463-MONOMER (specificity factor for ClpA-ClpP chaperone-protease complex)

- EG11345 (hflD) (b1132)
   Products of gene:
     - EG11345-MONOMER (lysogenization regulator)

- EG11314 (purB) (b1131)
   Products of gene:
     - ASL-MONOMER (5'-phosphoribosyl-4-(N-succinocarboxamide)-5-aminoimidazole lyase [multifunctional])
       Reactions:
        5'-phosphoribosyl-4-(N-succinocarboxamide)-5-aminoimidazole  ->  fumarate + aminoimidazole carboxamide ribonucleotide
         In pathways
         PRPP-PWY (superpathway of histidine, purine, and pyrimidine biosynthesis)
         DENOVOPURINE2-PWY (purine nucleotides de novo biosynthesis I)
         PWY-841 (PWY-841)
         PWY-6123 (inosine-5'-phosphate biosynthesis I)
         PWY-6124 (PWY-6124)
        adenylo-succinate  ->  fumarate + AMP
         In pathways
         PRPP-PWY (superpathway of histidine, purine, and pyrimidine biosynthesis)
         DENOVOPURINE2-PWY (purine nucleotides de novo biosynthesis I)
         P121-PWY (P121-PWY)
         PWY-841 (PWY-841)
         PWY-6126 (adenosine nucleotides de novo biosynthesis)

- EG11111 (cspD) (b0880)
   Products of gene:
     - EG11111-MONOMER (DNA replication inhibitor)
     - CPLX0-3301 (DNA replication inhibitor)

- EG10504 (infA) (bypA1)
   Products of gene:
     - EG10504-MONOMER (protein chain initiation factor IF-1)

- EG10156 (clpA) (b0882)
   Products of gene:
     - EG10156-MONOMER (ClpA)
     - CPLX0-881 (ClpA ATP-dependent protease specificity component and chaperone)
     - CPLX0-3108 (ClpAXP)
       Reactions:
        a protein  =  a peptide + a peptide
     - CPLX0-3104 (ClpAP)
       Reactions:
        a protein  =  a peptide + a peptide



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ORGANISMS CONTAINING AT LEAST 5 GENES FROM THE GROUP:

Total number of orgs: 157
Effective number of orgs (counting one per cluster within 468 clusters): 97

Organism list
Homologs in each organism in the list
Features enriched in organism list


Follow (ncbi) link, when present, to find the set of organism features for each organism
Org ID  Org Name  # genes in group found in org  
YPSE349747 ncbi Yersinia pseudotuberculosis IP 317586
YPSE273123 ncbi Yersinia pseudotuberculosis IP 329536
YPES386656 ncbi Yersinia pestis Pestoides F6
YPES377628 ncbi Yersinia pestis Nepal5166
YPES360102 ncbi Yersinia pestis Antiqua6
YPES349746 ncbi Yersinia pestis Angola6
YPES214092 ncbi Yersinia pestis CO926
YPES187410 ncbi Yersinia pestis KIM 105
YENT393305 ncbi Yersinia enterocolitica enterocolitica 80816
XORY360094 ncbi Xanthomonas oryzae pv. oryzae PXO99A6
XORY342109 ncbi Xanthomonas oryzae pv. oryzae MAFF 3110186
XORY291331 ncbi Xanthomonas oryzae pv. oryzae KACC103316
XFAS405440 ncbi Xylella fastidiosa M125
XFAS183190 ncbi Xylella fastidiosa Temecula15
XFAS160492 ncbi Xylella fastidiosa 9a5c6
XCAM487884 Xanthomonas campestris pv. paulliniae6
XCAM316273 ncbi Xanthomonas campestris pv. vesicatoria str. 85-106
XCAM314565 ncbi Xanthomonas campestris pv. campestris str. 80046
XCAM190485 ncbi Xanthomonas campestris pv. campestris str. ATCC 339136
XAXO190486 ncbi Xanthomonas axonopodis pv. citri str. 3066
VVUL216895 ncbi Vibrio vulnificus CMCP66
VVUL196600 ncbi Vibrio vulnificus YJ0166
VPAR223926 ncbi Vibrio parahaemolyticus RIMD 22106336
VFIS312309 ncbi Vibrio fischeri ES1146
VCHO345073 ncbi Vibrio cholerae O3956
VCHO ncbi Vibrio cholerae O1 biovar El Tor str. N169616
TTUR377629 ncbi Teredinibacter turnerae T79016
TDEN292415 ncbi Thiobacillus denitrificans ATCC 252595
TCRU317025 ncbi Thiomicrospira crunogena XCL-25
STYP99287 ncbi Salmonella enterica enterica serovar Typhimurium str. LT26
SSP94122 ncbi Shewanella sp. ANA-36
SSON300269 ncbi Shigella sonnei Ss0466
SSED425104 ncbi Shewanella sediminis HAW-EB36
SPRO399741 ncbi Serratia proteamaculans 5686
SPEA398579 ncbi Shewanella pealeana ATCC 7003456
SONE211586 ncbi Shewanella oneidensis MR-16
SLOI323850 ncbi Shewanella loihica PV-46
SHIGELLA ncbi Shigella flexneri 2a str. 2457T6
SHAL458817 ncbi Shewanella halifaxensis HAW-EB46
SGLO343509 ncbi Sodalis glossinidius morsitans6
SFLE373384 ncbi Shigella flexneri 5 str. 84016
SFLE198214 ncbi Shigella flexneri 2a str. 3016
SENT454169 ncbi Salmonella enterica enterica serovar Heidelberg str. SL4766
SENT321314 ncbi Salmonella enterica enterica serovar Choleraesuis str. SC-B676
SENT295319 ncbi Salmonella enterica enterica serovar Paratyphi A str. ATCC 91506
SENT220341 ncbi Salmonella enterica enterica serovar Typhi str. CT186
SENT209261 ncbi Salmonella enterica enterica serovar Typhi str. Ty26
SDYS300267 ncbi Shigella dysenteriae Sd1976
SDEN318161 ncbi Shewanella denitrificans OS2176
SDEG203122 ncbi Saccharophagus degradans 2-406
SBOY300268 ncbi Shigella boydii Sb2276
SBAL402882 ncbi Shewanella baltica OS1856
SBAL399599 ncbi Shewanella baltica OS1956
RSOL267608 ncbi Ralstonia solanacearum GMI10005
RMET266264 ncbi Ralstonia metallidurans CH345
REUT381666 ncbi Ralstonia eutropha H165
PSYR223283 ncbi Pseudomonas syringae pv. tomato str. DC30006
PSYR205918 ncbi Pseudomonas syringae pv. syringae B728a6
PSTU379731 ncbi Pseudomonas stutzeri A15016
PSP312153 ncbi Polynucleobacter necessarius asymbioticus QLW-P1DMWA-15
PPUT76869 ncbi Pseudomonas putida GB-16
PPUT351746 ncbi Pseudomonas putida F16
PPUT160488 ncbi Pseudomonas putida KT24406
PPRO298386 ncbi Photobacterium profundum SS96
PMEN399739 ncbi Pseudomonas mendocina ymp6
PLUM243265 ncbi Photorhabdus luminescens laumondii TTO16
PING357804 ncbi Psychromonas ingrahamii 375
PHAL326442 ncbi Pseudoalteromonas haloplanktis TAC1256
PFLU220664 ncbi Pseudomonas fluorescens Pf-56
PFLU216595 ncbi Pseudomonas fluorescens SBW256
PFLU205922 ncbi Pseudomonas fluorescens Pf0-16
PENT384676 ncbi Pseudomonas entomophila L486
PCRY335284 ncbi Psychrobacter cryohalolentis K55
PATL342610 ncbi Pseudoalteromonas atlantica T6c6
PARC259536 ncbi Psychrobacter arcticus 273-45
PAER208964 ncbi Pseudomonas aeruginosa PAO16
PAER208963 ncbi Pseudomonas aeruginosa UCBPP-PA146
NOCE323261 ncbi Nitrosococcus oceani ATCC 197075
NMUL323848 ncbi Nitrosospira multiformis ATCC 251965
NMEN374833 ncbi Neisseria meningitidis 0534425
NMEN272831 ncbi Neisseria meningitidis FAM185
NMEN122587 ncbi Neisseria meningitidis Z24915
NMEN122586 ncbi Neisseria meningitidis MC585
NGON242231 ncbi Neisseria gonorrhoeae FA 10905
NEUT335283 ncbi Nitrosomonas eutropha C915
NEUR228410 ncbi Nitrosomonas europaea ATCC 197185
MXAN246197 ncbi Myxococcus xanthus DK 16225
MSP400668 ncbi Marinomonas sp. MWYL16
MPET420662 ncbi Methylibium petroleiphilum PM15
MFLA265072 ncbi Methylobacillus flagellatus KT5
MCAP243233 ncbi Methylococcus capsulatus Bath5
MAQU351348 ncbi Marinobacter aquaeolei VT85
LPNE400673 ncbi Legionella pneumophila Corby5
LPNE297246 ncbi Legionella pneumophila Paris5
LPNE297245 ncbi Legionella pneumophila Lens5
LPNE272624 ncbi Legionella pneumophila pneumophila Philadelphia 15
LCHO395495 ncbi Leptothrix cholodnii SP-65
KPNE272620 ncbi Klebsiella pneumoniae pneumoniae MGH 785786
JSP375286 ncbi Janthinobacterium sp. Marseille5
ILOI283942 ncbi Idiomarina loihiensis L2TR6
HHAL349124 ncbi Halorhodospira halophila SL15
HCHE349521 ncbi Hahella chejuensis KCTC 23966
HARS204773 ncbi Herminiimonas arsenicoxydans5
FALN326424 ncbi Frankia alni ACN14a5
ESP42895 Enterobacter sp.6
EFER585054 ncbi Escherichia fergusonii ATCC 354696
ECOO157 ncbi Escherichia coli O157:H7 EDL9336
ECOL83334 Escherichia coli O157:H76
ECOL585397 ncbi Escherichia coli ED1a6
ECOL585057 ncbi Escherichia coli IAI396
ECOL585056 ncbi Escherichia coli UMN0266
ECOL585055 ncbi Escherichia coli 559896
ECOL585035 ncbi Escherichia coli S886
ECOL585034 ncbi Escherichia coli IAI16
ECOL481805 ncbi Escherichia coli ATCC 87395
ECOL469008 ncbi Escherichia coli BL21(DE3)6
ECOL439855 ncbi Escherichia coli SMS-3-56
ECOL413997 ncbi Escherichia coli B str. REL6066
ECOL409438 ncbi Escherichia coli SE116
ECOL364106 ncbi Escherichia coli UTI896
ECOL362663 ncbi Escherichia coli 5366
ECOL331111 ncbi Escherichia coli E24377A6
ECOL316407 ncbi Escherichia coli K-12 substr. W31106
ECOL199310 ncbi Escherichia coli CFT0736
ECAR218491 ncbi Pectobacterium atrosepticum SCRI10436
DNOD246195 ncbi Dichelobacter nodosus VCS1703A5
DARO159087 ncbi Dechloromonas aromatica RCB5
CVIO243365 ncbi Chromobacterium violaceum ATCC 124725
CSAL290398 ncbi Chromohalobacter salexigens DSM 30436
CRUT413404 ncbi Candidatus Ruthia magnifica Cm (Calyptogena magnifica)5
CPSY167879 ncbi Colwellia psychrerythraea 34H6
CJAP155077 Cellvibrio japonicus6
BVIE269482 ncbi Burkholderia vietnamiensis G45
BTHA271848 ncbi Burkholderia thailandensis E2645
BSP36773 Burkholderia sp.5
BPSE320373 ncbi Burkholderia pseudomallei 6685
BPSE320372 ncbi Burkholderia pseudomallei 1710b5
BPSE272560 ncbi Burkholderia pseudomallei K962435
BPET94624 Bordetella petrii5
BPER257313 ncbi Bordetella pertussis Tohama I5
BPAR257311 ncbi Bordetella parapertussis 128225
BMAL320389 ncbi Burkholderia mallei NCTC 102475
BMAL320388 ncbi Burkholderia mallei SAVP15
BMAL243160 ncbi Burkholderia mallei ATCC 233445
BCEN331272 ncbi Burkholderia cenocepacia HI24245
BCEN331271 ncbi Burkholderia cenocepacia AU 10545
BBRO257310 ncbi Bordetella bronchiseptica RB505
BAMB398577 ncbi Burkholderia ambifaria MC40-65
BAMB339670 ncbi Burkholderia ambifaria AMMD5
ASP62977 ncbi Acinetobacter sp. ADP15
ASP62928 ncbi Azoarcus sp. BH725
ASAL382245 ncbi Aeromonas salmonicida salmonicida A4496
AHYD196024 Aeromonas hydrophila dhakensis6
AFER243159 ncbi Acidithiobacillus ferrooxidans ATCC 232706
AEHR187272 ncbi Alkalilimnicola ehrlichii MLHE-15
ABOR393595 ncbi Alcanivorax borkumensis SK26
ABAU360910 ncbi Bordetella avium 197N5


Names of the homologs of the genes in the group in each of these orgs
  G6463   EG11345   EG11314   EG11111   EG10504   EG10156   
YPSE349747 YPSIP31758_2607YPSIP31758_1611YPSIP31758_1610YPSIP31758_2609YPSIP31758_2604YPSIP31758_3212
YPSE273123 YPTB1393YPTB2431YPTB2432YPTB1392YPTB1395YPTB1394
YPES386656 YPDSF_2328YPDSF_1811YPDSF_1812YPDSF_2330YPDSF_2325YPDSF_2911
YPES377628 YPN_2613YPN_1994YPN_1995YPN_2614YPN_2610YPN_2612
YPES360102 YPA_0657YPA_1887YPA_1888YPA_0656YPA_0660YPA_2766
YPES349746 YPANGOLA_A1600YPANGOLA_A2852YPANGOLA_A2853YPANGOLA_A1599YPANGOLA_A1603YPANGOLA_A3475
YPES214092 YPO1367YPO1637YPO1636YPO1366YPO1370YPO3275
YPES187410 Y2810Y1798Y1797Y2807Y0914
YENT393305 YE1517YE1721YE1720YE1516YE1519YE1518
XORY360094 XOOORF_2786XOOORF_2789XOOORF_2952XOOORF_3133XOOORF_2784XOOORF_2785
XORY342109 XOO2413XOO2416XOO1930XOO1765XOO2411XOO2412
XORY291331 XOO2554XOO2557XOO2048XOO1870XOO2552XOO2553
XFAS405440 XFASM12_0785XFASM12_0782XFASM12_0892XFASM12_0788XFASM12_0786
XFAS183190 PD_0664PD_0661PD_0762PD_0666PD_0665
XFAS160492 XF1442XF1439XF1553XF2352XF1445XF1443
XCAM487884 XCC-B100_2265XCC-B100_2262XCC-B100_2781XCC-B100_3017XCC-B100_2267XCC-B100_2266
XCAM316273 XCAORF_2245XCAORF_2242XCAORF_1757XCAORF_1541XCAORF_2247XCAORF_2246
XCAM314565 XC_2219XC_2222XC_2744XC_2955XC_2217XC_2218
XCAM190485 XCC1966XCC1963XCC1492XCC1286XCC1968XCC1967
XAXO190486 XAC2000XAC1997XAC1539XAC1337XAC2002XAC2001
VVUL216895 VV1_2120VV1_2927VV1_2928VV1_2119VV1_2123VV1_2121
VVUL196600 VV2323VV1342VV1341VV2324VV2321VV2322
VPAR223926 VP1013VP1129VP1128VP1012VP1016VP1014
VFIS312309 VF1766VF1785VF1786VF1767VF1764VF1765
VCHO345073 VC0395_A0713VC0395_A0645VC0395_A0644VC0395_A0712VC0395_A1338VC0395_A0714
VCHO VC1143VC1127VC1126VC1142VC1737VC1144
TTUR377629 TERTU_1962TERTU_1750TERTU_1749TERTU_1961TERTU_1964TERTU_1963
TDEN292415 TBD_1236TBD_0518TBD_0855TBD_0426TBD_1237
TCRU317025 TCR_1111TCR_1098TCR_1137TCR_1113TCR_1112
STYP99287 STM0944STM1233STM1232STM0943STM0953STM0945
SSP94122 SHEWANA3_1752SHEWANA3_1746SHEWANA3_1745SHEWANA3_1751SHEWANA3_1754SHEWANA3_1753
SSON300269 SSO_0882SSO_1150SSO_1149SSO_0867SSO_0885SSO_0883
SSED425104 SSED_1885SSED_1880SSED_1879SSED_1884SSED_1887SSED_1886
SPRO399741 SPRO_1673SPRO_2021SPRO_2020SPRO_1672SPRO_1675SPRO_1674
SPEA398579 SPEA_2533SPEA_2539SPEA_2540SPEA_2534SPEA_2531SPEA_2532
SONE211586 SO_2627SO_2634SO_2635SO_2628SO_2625SO_2626
SLOI323850 SHEW_1565SHEW_1559SHEW_1558SHEW_1564SHEW_1567SHEW_1566
SHIGELLA YLJAYCFCPURBCSPDINFACLPA
SHAL458817 SHAL_1720SHAL_1714SHAL_1713SHAL_1719SHAL_1722SHAL_1721
SGLO343509 SG1101SG1084SG1083SG1100SG1103SG1102
SFLE373384 SFV_0872SFV_1167SFV_1166SFV_0871SFV_0875SFV_0873
SFLE198214 AAN42474.1AAN42768.1AAN42767.1AAN42473.1AAN42476.1AAN42475.1
SENT454169 SEHA_C1043SEHA_C1350SEHA_C1349SEHA_C1042SEHA_C1053SEHA_C1044
SENT321314 SCH_0899SCH_1184SCH_1183SCH_0898SCH_0907SCH_0900
SENT295319 SPA1855SPA1617SPA1618SPA1856SPA1845SPA1854
SENT220341 STY0942STY1273STY1272STY0939STY0951STY0943
SENT209261 T1989T1687T1688T1990T1980T1988
SDYS300267 SDY_2380SDY_2020SDY_2021SDY_2381SDY_2377SDY_2379
SDEN318161 SDEN_1833SDEN_1827SDEN_1826SDEN_1832SDEN_1835SDEN_1834
SDEG203122 SDE_1686SDE_1676SDE_1675SDE_1685SDE_1688SDE_1687
SBOY300268 SBO_0814SBO_1907SBO_1908SBO_0813SBO_0817SBO_0815
SBAL402882 SHEW185_2466SHEW185_2472SHEW185_2473SHEW185_2467SHEW185_2464SHEW185_2465
SBAL399599 SBAL195_2586SBAL195_2592SBAL195_2593SBAL195_2587SBAL195_2584SBAL195_2585
RSOL267608 RSC2465RSC2720RSC2466RSC2998RSC2464
RMET266264 RMET_2893RMET_2956RMET_5818RMET_3296RMET_2892
REUT381666 H16_A3053H16_A3124H16_B0002H16_A3463H16_A3052
PSYR223283 PSPTO_3354PSPTO_3359PSPTO_3360PSPTO_3355PSPTO_3352PSPTO_3353
PSYR205918 PSYR_3184PSYR_3191PSYR_3192PSYR_3185PSYR_3182PSYR_3183
PSTU379731 PST_2299PST_2305PST_2306PST_2300PST_2297PST_2298
PSP312153 PNUC_1749PNUC_1794PNUC_0586PNUC_0074PNUC_1748
PPUT76869 PPUTGB1_3614PPUTGB1_3620PPUTGB1_3621PPUTGB1_3615PPUTGB1_3612PPUTGB1_3613
PPUT351746 PPUT_1824PPUT_1818PPUT_1817PPUT_1823PPUT_1826PPUT_1825
PPUT160488 PP_4009PP_4015PP_4016PP_4010PP_4007PP_4008
PPRO298386 PBPRA1151PBPRA1146PBPRA1145PBPRA1150PBPRA1153PBPRA1152
PMEN399739 PMEN_2394PMEN_2400PMEN_2402PMEN_2395PMEN_2392PMEN_2393
PLUM243265 PLU1593PLU2805PLU2806PLU1592PLU1595PLU1594
PING357804 PING_0742PING_0962PING_0961PING_0744PING_0743
PHAL326442 PSHAA1725PSHAA1691PSHAA1692PSHAA1726PSHAA1723PSHAA1724
PFLU220664 PFL_3886PFL_3892PFL_3893PFL_3887PFL_3884PFL_3885
PFLU216595 PFLU3806PFLU3812PFLU3813PFLU3807PFLU3804PFLU3805
PFLU205922 PFL_3591PFL_3597PFL_3598PFL_3592PFL_3589PFL_3590
PENT384676 PSEEN2206PSEEN2199PSEEN2198PSEEN2205PSEEN2208PSEEN2207
PCRY335284 PCRYO_1678PCRYO_1146PCRYO_2133PCRYO_1569PCRYO_1677
PATL342610 PATL_2375PATL_2380PATL_2381PATL_2376PATL_2373PATL_2374
PARC259536 PSYC_1499PSYC_1245PSYC_1846PSYC_1409PSYC_1498
PAER208964 PA2621PA2627PA2629PA2622PA2619PA2620
PAER208963 PA14_30210PA14_30140PA14_30110PA14_30200PA14_30240PA14_30230
NOCE323261 NOC_2426NOC_2041NOC_2106NOC_2598NOC_2425
NMUL323848 NMUL_A2247NMUL_A2241NMUL_A2246NMUL_A0788NMUL_A2248
NMEN374833 NMCC_0795NMCC_1861NMCC_0796NMCC_1987BNMCC_0794
NMEN272831 NMC0775NMC0290NMC0776NMC0153NMC0774
NMEN122587 NMA1046NMA2203NMA1047NMA0108NMA1045
NMEN122586 NMB_0837NMB_0284NMB_0838NMB_0163NMB_0836
NGON242231 NGO0409NGO1711NGO0410NGO18211NGO0408
NEUT335283 NEUT_2047NEUT_0410NEUT_2046NEUT_0579NEUT_2048
NEUR228410 NE1732NE1951NE1731NE0422NE1733
MXAN246197 MXAN_6025MXAN_2079MXAN_0672MXAN_3321MXAN_6026
MSP400668 MMWYL1_3261MMWYL1_3266MMWYL1_3268MMWYL1_3262MMWYL1_3259MMWYL1_3260
MPET420662 MPE_A2462MPE_A3624MPE_A2463MPE_A3422MPE_A2461
MFLA265072 MFLA_0509MFLA_1819MFLA_2140MFLA_0300MFLA_0508
MCAP243233 MCA_1788MCA_0201MCA_1784MCA_1790MCA_1789
MAQU351348 MAQU_1758MAQU_1763MAQU_1764MAQU_1759MAQU_1756
LPNE400673 LPC_2478LPC_2494LPC_2917LPC_1211LPC_2477
LPNE297246 LPP0879LPP0863LPP0493LPP1734LPP0880
LPNE297245 LPL0850LPL0834LPL0469LPL1734LPL0851
LPNE272624 LPG0817LPG0801LPG0426LPG1770LPG0818
LCHO395495 LCHO_1663LCHO_4111LCHO_1662LCHO_3928LCHO_1664
KPNE272620 GKPORF_B5353GKPORF_B0058GKPORF_B0057GKPORF_B5352GKPORF_B5355GKPORF_B2247
JSP375286 MMA_2515MMA_0359MMA_2516MMA_3390MMA_2514
ILOI283942 IL0675IL1311IL1312IL0676IL0673IL0674
HHAL349124 HHAL_1401HHAL_1405HHAL_0026HHAL_1399HHAL_1400
HCHE349521 HCH_02338HCH_02332HCH_02331HCH_02337HCH_02340HCH_02339
HARS204773 HEAR2446HEAR0312HEAR2448HEAR3145HEAR2445
FALN326424 FRAAL1495FRAAL6665FRAAL0603FRAAL1105FRAAL6680
ESP42895 ENT638_1398ENT638_1645ENT638_1644ENT638_1397ENT638_1407ENT638_1399
EFER585054 EFER_1029EFER_1798EFER_1799EFER_1028EFER_1032EFER_1030
ECOO157 YLJAYCFCPURBCSPDINFACLPA
ECOL83334 ECS0967ECS1604ECS1603ECS0966ECS0969ECS0968
ECOL585397 ECED1_0848ECED1_1276ECED1_1275ECED1_0847ECED1_0858ECED1_0849
ECOL585057 ECIAI39_2270ECIAI39_2005ECIAI39_2006ECIAI39_2272ECIAI39_2266ECIAI39_2269
ECOL585056 ECUMN_1076ECUMN_1376ECUMN_1375ECUMN_1075ECUMN_1079ECUMN_1077
ECOL585055 EC55989_0926EC55989_1245EC55989_1244EC55989_0925EC55989_0929EC55989_0927
ECOL585035 ECS88_0903ECS88_1147ECS88_1146ECS88_0902ECS88_0913ECS88_0904
ECOL585034 ECIAI1_0921ECIAI1_1170ECIAI1_1169ECIAI1_0920ECIAI1_0924ECIAI1_0922
ECOL481805 ECOLC_2715ECOLC_2471ECOLC_2472ECOLC_2716ECOLC_2712
ECOL469008 ECBD_2713ECBD_2467ECBD_2468ECBD_2714ECBD_2711ECBD_2712
ECOL439855 ECSMS35_2279ECSMS35_1993ECSMS35_1994ECSMS35_2280ECSMS35_2237ECSMS35_2278
ECOL413997 ECB_00886ECB_01130ECB_01129ECB_00885ECB_00888ECB_00887
ECOL409438 ECSE_0939ECSE_1198ECSE_1197ECSE_0938ECSE_0942ECSE_0940
ECOL364106 UTI89_C0887UTI89_C1261UTI89_C1260UTI89_C0885UTI89_C0899UTI89_C0888
ECOL362663 ECP_0896ECP_1127ECP_1126ECP_0895ECP_0898ECP_0897
ECOL331111 ECE24377A_0954ECE24377A_1295ECE24377A_1294ECE24377A_0953ECE24377A_0957ECE24377A_0955
ECOL316407 ECK0872:JW0865:B0881ECK1118:JW5165:B1132ECK1117:JW1117:B1131ECK0871:JW0864:B0880ECK0875:JW0867:B0884ECK0873:JW0866:B0882
ECOL199310 C1018C1511C1510C1017C1021C1019
ECAR218491 ECA2657ECA2443ECA2444ECA2659ECA2653ECA2656
DNOD246195 DNO_0656DNO_0629DNO_0667DNO_1198DNO_0655
DARO159087 DARO_3094DARO_3288DARO_3093DARO_0340DARO_3095
CVIO243365 CV_3668CV_3834CV_3667CV_4165CV_3669
CSAL290398 CSAL_2441CSAL_2445CSAL_2446CSAL_1668CSAL_2439CSAL_2440
CRUT413404 RMAG_0912RMAG_0748RMAG_0991RMAG_0850RMAG_0911
CPSY167879 CPS_2894CPS_2901CPS_2902CPS_2895CPS_2765CPS_2893
CJAP155077 CJA_2569CJA_2491CJA_2492CJA_2570CJA_2567CJA_2568
BVIE269482 BCEP1808_2597BCEP1808_0632BCEP1808_2598BCEP1808_0351BCEP1808_2596
BTHA271848 BTH_I0762BTH_I1221BTH_I2936BTH_I3047BTH_I0763
BSP36773 BCEP18194_A5851BCEP18194_A3752BCEP18194_A5852BCEP18194_A3468BCEP18194_A5850
BPSE320373 BURPS668_0959BURPS668_3402BURPS668_3598BURPS668_3725BURPS668_0960
BPSE320372 BURPS1710B_A1173BURPS1710B_A3715BURPS1710B_A3897BURPS1710B_A4048BURPS1710B_A1174
BPSE272560 BPSL0898ABPSL2928BPSL3079BPSL3192BPSL0899
BPET94624 BPET2662BPET2724BPET2663BPET4929BPET2659
BPER257313 BP2756BP2890BP2757BP3637BP2753
BPAR257311 BPP2572BPP2506BPP2571BPP0052BPP2575
BMAL320389 BMA10247_2157BMA10247_2627BMA10247_3184BMA10247_3499BMA10247_2158
BMAL320388 BMASAVP1_A0575BMASAVP1_A0358BMASAVP1_A0574BMASAVP1_A3148BMASAVP1_A0576
BMAL243160 BMA_2280BMA_2442BMA_2791BMA_2611BMA_2281
BCEN331272 BCEN2424_2519BCEN2424_0666BCEN2424_2520BCEN2424_0369BCEN2424_2518
BCEN331271 BCEN_1908BCEN_0183BCEN_1909BCEN_2738BCEN_1907
BBRO257310 BB2017BB1953BB2016BB0052BB2020
BAMB398577 BAMMC406_2437BAMMC406_0587BAMMC406_2438BAMMC406_0297BAMMC406_2436
BAMB339670 BAMB_2567BAMB_0561BAMB_0408BAMB_0288BAMB_2566
ASP62977 ACIAD1362ACIAD1220ACIAD1219ACIAD0472ACIAD1363
ASP62928 AZO1133AZO0901AZO1134AZO3396AZO1132
ASAL382245 ASA_2447ASA_1390ASA_1389ASA_2448ASA_2445ASA_2446
AHYD196024 AHA_1856AHA_1414AHA_1413AHA_1855AHA_1858AHA_1857
AFER243159 AFE_2517AFE_2123AFE_0746AFE_2450AFE_2683AFE_2518
AEHR187272 MLG_1448MLG_1452MLG_1358MLG_1446MLG_1447
ABOR393595 ABO_1284ABO_1274ABO_1273ABO_1283ABO_1286ABO_1285
ABAU360910 BAV2091BAV2142BAV2092BAV0055BAV2088


Organism features enriched in list (features available for 150 out of the 157 orgs in the list)
Feature    Pvalue       Num occurrences in list  Total num occurrences  
Arrangment:Chains 0.0000280992
Arrangment:Pairs 0.000790242112
Disease:Bubonic_plague 0.000269066
Disease:Dysentery 0.000269066
Disease:Gastroenteritis 0.00012461013
Disease:Legionnaire's_disease 0.004252744
Disease:Meningitis_and_septicemia 0.004252744
Endospores:No 4.981e-828211
Endospores:Yes 1.230e-6153
GC_Content_Range4:0-40 2.733e-257213
GC_Content_Range4:40-60 4.165e-1395224
GC_Content_Range4:60-100 0.005913848145
GC_Content_Range7:30-40 7.723e-177166
GC_Content_Range7:50-60 6.594e-1257107
GC_Content_Range7:60-70 0.001908747134
Genome_Size_Range5:0-2 3.894e-212155
Genome_Size_Range5:2-4 0.000120933197
Genome_Size_Range5:4-6 3.626e-1891184
Genome_Size_Range5:6-10 0.00006482447
Genome_Size_Range9:1-2 1.610e-162128
Genome_Size_Range9:2-3 0.000768218120
Genome_Size_Range9:4-5 4.733e-74596
Genome_Size_Range9:5-6 3.902e-94688
Genome_Size_Range9:6-8 0.00001052238
Gram_Stain:Gram_Neg 9.361e-25136333
Gram_Stain:Gram_Pos 7.670e-221150
Motility:No 5.342e-1111151
Motility:Yes 6.968e-13106267
Optimal_temp.:- 0.003782379257
Optimal_temp.:35-37 0.0051649813
Oxygen_Req:Anaerobic 2.929e-113102
Oxygen_Req:Facultative 0.000012573201
Pathogenic_in:No 0.000012537226
Pathogenic_in:Plant 0.00011041115
Shape:Coccus 5.038e-6682
Shape:Rod 2.559e-12124347
Shape:Spiral 0.0022349234
Temp._range:Mesophilic 0.0072123131473
Temp._range:Psychrophilic 0.000113089
Temp._range:Thermophilic 0.0002734135



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ORGANISMS CONTAINING AT MOST 1 GENES FROM THE GROUP:

Total number of orgs: 164
Effective number of orgs (counting one per cluster within 468 clusters): 138

Organism list
Homologs in each organism in the list
Features enriched in organism list


Follow (ncbi) link, when present, to find the set of organism features for each organism
Org ID  Org Name  # genes in group found in org  
UURE95667 Ureaplasma urealyticum serovar 130
UURE95664 Ureaplasma urealyticum serovar 100
UPAR505682 ncbi Ureaplasma parvum serovar 3 str. ATCC 278150
UMET351160 ncbi uncultured methanogenic archaeon RC-I0
TWHI218496 ncbi Tropheryma whipplei TW08/271
TWHI203267 ncbi Tropheryma whipplei Twist1
TVOL273116 ncbi Thermoplasma volcanium GSS11
TTHE300852 ncbi Thermus thermophilus HB81
TTHE262724 ncbi Thermus thermophilus HB271
TTEN273068 ncbi Thermoanaerobacter tengcongensis MB41
TSP1755 Thermoanaerobacter sp.1
TROS309801 ncbi Thermomicrobium roseum DSM 51591
TPSE340099 ncbi Thermoanaerobacter pseudethanolicus ATCC 332231
TPEN368408 ncbi Thermofilum pendens Hrk 50
TPAL243276 ncbi Treponema pallidum pallidum Nichols1
TKOD69014 ncbi Thermococcus kodakarensis KOD11
TELO197221 ncbi Thermosynechococcus elongatus BP-11
TACI273075 ncbi Thermoplasma acidophilum DSM 17281
STOK273063 ncbi Sulfolobus tokodaii 71
SSP84588 ncbi Synechococcus sp. WH 81020
SSP64471 ncbi Synechococcus sp. CC93111
SSP1148 ncbi Synechocystis sp. PCC 68030
SSP1131 Synechococcus sp. CC96050
SSOL273057 ncbi Sulfolobus solfataricus P21
SPYO286636 ncbi Streptococcus pyogenes MGAS103941
SPYO193567 ncbi Streptococcus pyogenes SSI-11
SMAR399550 ncbi Staphylothermus marinus F10
SELO269084 ncbi Synechococcus elongatus PCC 63011
SACI330779 ncbi Sulfolobus acidocaldarius DSM 6391
RTYP257363 ncbi Rickettsia typhi Wilmington1
RRIC452659 ncbi Rickettsia rickettsii Iowa1
RRIC392021 ncbi Rickettsia rickettsii Sheila Smith1
RPRO272947 ncbi Rickettsia prowazekii Madrid E1
RMAS416276 ncbi Rickettsia massiliae MTU50
RFEL315456 ncbi Rickettsia felis URRWXCal21
RCON272944 ncbi Rickettsia conorii Malish 71
RALB246199 Ruminococcus albus 81
RAKA293614 ncbi Rickettsia akari Hartford0
PTOR263820 ncbi Picrophilus torridus DSM 97901
PSP117 Pirellula sp.1
PMAR93060 ncbi Prochlorococcus marinus MIT 92150
PMAR74547 ncbi Prochlorococcus marinus MIT 93131
PMAR74546 ncbi Prochlorococcus marinus MIT 93121
PMAR59920 ncbi Prochlorococcus marinus NATL2A1
PMAR167555 ncbi Prochlorococcus marinus NATL1A1
PMAR167546 ncbi Prochlorococcus marinus MIT 93010
PMAR167542 ncbi Prochlorococcus marinus MIT 95150
PMAR167540 Prochlorococcus marinus pastoris MED4ax1
PMAR167539 ncbi Prochlorococcus marinus marinus CCMP13751
PMAR146891 ncbi Prochlorococcus marinus AS96010
PLUT319225 ncbi Chlorobium luteolum DSM 2731
PISL384616 ncbi Pyrobaculum islandicum DSM 41841
PHOR70601 ncbi Pyrococcus horikoshii OT31
PFUR186497 ncbi Pyrococcus furiosus DSM 36381
PAST100379 Onion yellows phytoplasma0
PARS340102 ncbi Pyrobaculum arsenaticum DSM 135141
PAER178306 ncbi Pyrobaculum aerophilum IM21
PACN267747 ncbi Propionibacterium acnes KPA1712020
PABY272844 ncbi Pyrococcus abyssi GE51
OTSU357244 ncbi Orientia tsutsugamushi Boryong0
NPHA348780 ncbi Natronomonas pharaonis DSM 21601
MTHE349307 ncbi Methanosaeta thermophila PT1
MTHE187420 ncbi Methanothermobacter thermautotrophicus Delta H1
MSYN262723 ncbi Mycoplasma synoviae 530
MSTA339860 ncbi Methanosphaera stadtmanae DSM 30911
MSED399549 ncbi Metallosphaera sedula DSM 53481
MPUL272635 ncbi Mycoplasma pulmonis UAB CTIP0
MPNE272634 ncbi Mycoplasma pneumoniae M1290
MPEN272633 ncbi Mycoplasma penetrans HF-20
MMYC272632 ncbi Mycoplasma mycoides mycoides SC str. PG10
MMOB267748 ncbi Mycoplasma mobile 163K0
MMAZ192952 ncbi Methanosarcina mazei Go10
MMAR444158 ncbi Methanococcus maripaludis C61
MMAR426368 ncbi Methanococcus maripaludis C71
MMAR402880 ncbi Methanococcus maripaludis C50
MMAR368407 ncbi Methanoculleus marisnigri JR10
MMAR267377 ncbi Methanococcus maripaludis S21
MLAB410358 ncbi Methanocorpusculum labreanum Z0
MKAN190192 ncbi Methanopyrus kandleri AV191
MJAN243232 ncbi Methanocaldococcus jannaschii DSM 26611
MHYO295358 ncbi Mycoplasma hyopneumoniae 2320
MHYO262722 ncbi Mycoplasma hyopneumoniae 74480
MHYO262719 ncbi Mycoplasma hyopneumoniae J0
MHUN323259 ncbi Methanospirillum hungatei JF-11
MGEN243273 ncbi Mycoplasma genitalium G370
MFLO265311 ncbi Mesoplasma florum L10
MCAP340047 ncbi Mycoplasma capricolum capricolum ATCC 273430
MBUR259564 ncbi Methanococcoides burtonii DSM 62420
MBAR269797 ncbi Methanosarcina barkeri Fusaro0
MART243272 ncbi Mycoplasma arthritidis 158L3-10
MAER449447 ncbi Microcystis aeruginosa NIES-8431
MAEO419665 ncbi Methanococcus aeolicus Nankai-31
MACE188937 ncbi Methanosarcina acetivorans C2A0
LWEL386043 ncbi Listeria welshimeri serovar 6b str. SLCC53341
LSPH444177 ncbi Lysinibacillus sphaericus C3-411
LMON265669 ncbi Listeria monocytogenes 4b F23651
LMON169963 ncbi Listeria monocytogenes EGD-e1
LINN272626 ncbi Listeria innocua Clip112621
IHOS453591 ncbi Ignicoccus hospitalis KIN4/I1
HWAL362976 ncbi Haloquadratum walsbyi DSM 167901
HSP64091 ncbi Halobacterium sp. NRC-11
HSAL478009 ncbi Halobacterium salinarum R11
HPYL85963 ncbi Helicobacter pylori J991
HPYL357544 ncbi Helicobacter pylori HPAG11
HPY ncbi Helicobacter pylori 266951
HMUK485914 ncbi Halomicrobium mukohataei DSM 122861
HMAR272569 ncbi Haloarcula marismortui ATCC 430491
HBUT415426 ncbi Hyperthermus butylicus DSM 54560
HACI382638 ncbi Helicobacter acinonychis Sheeba1
GKAU235909 ncbi Geobacillus kaustophilus HTA4261
FTUL458234 ncbi Francisella tularensis holarctica FTNF002-001
FTUL418136 ncbi Francisella tularensis tularensis WY96-34181
FTUL401614 ncbi Francisella novicida U1121
FTUL393115 ncbi Francisella tularensis tularensis FSC1981
FTUL393011 ncbi Francisella tularensis holarctica OSU181
FTUL351581 Francisella tularensis holarctica FSC2001
FSUC59374 ncbi Fibrobacter succinogenes succinogenes S851
FRANT ncbi Francisella tularensis tularensis SCHU S41
FPHI484022 ncbi Francisella philomiragia philomiragia ATCC 250171
FNUC190304 ncbi Fusobacterium nucleatum nucleatum ATCC 255861
ERUM302409 ncbi Ehrlichia ruminantium Gardel1
ERUM254945 ncbi Ehrlichia ruminantium Welgevonden1
ECHA205920 ncbi Ehrlichia chaffeensis Arkansas1
ECAN269484 ncbi Ehrlichia canis Jake1
DSP255470 ncbi Dehalococcoides sp. CBDB11
DSP216389 ncbi Dehalococcoides sp. BAV11
DETH243164 ncbi Dehalococcoides ethenogenes 1951
CTRA471473 ncbi Chlamydia trachomatis L2b/UCH-1/proctitis0
CTRA471472 ncbi Chlamydia trachomatis 434/Bu0
CTET212717 ncbi Clostridium tetani E881
CSUL444179 ncbi Candidatus Sulcia muelleri GWSS0
CPRO264201 ncbi Candidatus Protochlamydia amoebophila UWE250
CPNE182082 ncbi Chlamydophila pneumoniae TW-1830
CPNE138677 ncbi Chlamydophila pneumoniae J1380
CPNE115713 ncbi Chlamydophila pneumoniae CWL0290
CPNE115711 ncbi Chlamydophila pneumoniae AR390
CPEL335992 ncbi Candidatus Pelagibacter ubique HTCC10620
CMUR243161 ncbi Chlamydia muridarum Nigg0
CMET456442 ncbi Candidatus Methanoregula boonei 6A80
CMAQ397948 ncbi Caldivirga maquilingensis IC-1671
CKOR374847 ncbi Candidatus Korarchaeum cryptofilum OPF81
CHOM360107 ncbi Campylobacter hominis ATCC BAA-3811
CGLU196627 ncbi Corynebacterium glutamicum ATCC 130321
CFEL264202 ncbi Chlamydophila felis Fe/C-560
CCUR360105 ncbi Campylobacter curvus 525.920
CCON360104 ncbi Campylobacter concisus 138260
CCHL340177 ncbi Chlorobium chlorochromatii CaD31
CCAV227941 ncbi Chlamydophila caviae GPIC0
CABO218497 ncbi Chlamydophila abortus S26/30
BXEN266265 ncbi Burkholderia xenovorans LB4001
BTUR314724 ncbi Borrelia turicatae 91E1351
BLON206672 ncbi Bifidobacterium longum NCC27051
BHER314723 ncbi Borrelia hermsii DAH1
BGAR290434 ncbi Borrelia garinii PBi1
BCLA66692 ncbi Bacillus clausii KSM-K161
BBUR224326 ncbi Borrelia burgdorferi B311
BAFZ390236 ncbi Borrelia afzelii PKo1
AYEL322098 ncbi Aster yellows witches-broom phytoplasma AYWB0
AURANTIMONAS Aurantimonas manganoxydans SI85-9A10
APHA212042 ncbi Anaplasma phagocytophilum HZ1
APER272557 ncbi Aeropyrum pernix K10
AMAR234826 ncbi Anaplasma marginale St. Maries1
ALAI441768 ncbi Acholeplasma laidlawii PG-8A0
AFUL224325 ncbi Archaeoglobus fulgidus DSM 43041


Names of the homologs of the genes in the group in each of these orgs
  G6463   EG11345   EG11314   EG11111   EG10504   EG10156   
UURE95667
UURE95664
UPAR505682
UMET351160
TWHI218496 TW0766
TWHI203267 TW791
TVOL273116 TVN0999
TTHE300852 TTHA1513
TTHE262724 TT_C1149
TTEN273068 TTE2268
TSP1755 TETH514_0890
TROS309801 TRD_0745
TPSE340099 TETH39_0397
TPEN368408
TPAL243276 TP_0801
TKOD69014 TK0561
TELO197221 TSR0101
TACI273075 TA0523
STOK273063 ST0288
SSP84588
SSP64471 GSYN2022
SSP1148
SSP1131
SSOL273057 SSO0240
SPYO286636 M6_SPY0082
SPYO193567 SPS0031
SMAR399550
SELO269084 SYC1198_D
SACI330779 SACI_0706
RTYP257363 RT0802
RRIC452659 RRIOWA_1483
RRIC392021 A1G_06945
RPRO272947 RP814
RMAS416276
RFEL315456 RF_1292
RCON272944 RC1265
RALB246199 GRAORF_3038
RAKA293614
PTOR263820 PTO0816
PSP117 RB12137
PMAR93060
PMAR74547 PMT1061
PMAR74546 PMT9312_1099
PMAR59920 PMN2A_0660
PMAR167555 NATL1_14921
PMAR167546
PMAR167542
PMAR167540 PMM1088
PMAR167539 PRO_1107
PMAR146891
PLUT319225 PLUT_1932
PISL384616 PISL_1197
PHOR70601 PH0852
PFUR186497 PF0667
PAST100379
PARS340102 PARS_0161
PAER178306 PAE0972
PACN267747
PABY272844 PAB0829
OTSU357244
NPHA348780 NP1658A
MTHE349307 MTHE_1218
MTHE187420 MTH1537
MSYN262723
MSTA339860 MSP_1247
MSED399549 MSED_0018
MPUL272635
MPNE272634
MPEN272633
MMYC272632
MMOB267748
MMAZ192952
MMAR444158 MMARC6_1684
MMAR426368 MMARC7_0216
MMAR402880
MMAR368407
MMAR267377 MMP0971
MLAB410358
MKAN190192 MK1085
MJAN243232 MJ_0929
MHYO295358
MHYO262722
MHYO262719
MHUN323259 MHUN_0824
MGEN243273
MFLO265311
MCAP340047
MBUR259564
MBAR269797
MART243272
MAER449447 MAE_25950
MAEO419665 MAEO_0986
MACE188937
LWEL386043 LWE2560
LSPH444177 BSPH_4592
LMON265669 LMOF2365_2583
LMON169963 LMO2610
LINN272626 LIN2759
IHOS453591 IGNI_0400
HWAL362976 HQ1662A
HSP64091 VNG0415G
HSAL478009 OE1623F
HPYL85963 JHP0028
HPYL357544 HPAG1_0030
HPY HP0032
HMUK485914 HMUK_3158
HMAR272569 RRNAC0192
HBUT415426
HACI382638 HAC_0045
GKAU235909 GK0129
FTUL458234 FTA_1308
FTUL418136 FTW_0867
FTUL401614 FTN_0846
FTUL393115 FTF0966
FTUL393011 FTH_1213
FTUL351581 FTL_1236
FSUC59374 FSU3208
FRANT INFA
FPHI484022 FPHI_1768
FNUC190304 FN1287
ERUM302409 ERGA_CDS_06620
ERUM254945 ERWE_CDS_06710
ECHA205920 ECH_0567
ECAN269484 ECAJ_0464
DSP255470 CBDBA70
DSP216389 DEHABAV1_0051
DETH243164 DET_0057
CTRA471473
CTRA471472
CTET212717 CTC_02633
CSUL444179
CPRO264201
CPNE182082
CPNE138677
CPNE115713
CPNE115711
CPEL335992
CMUR243161
CMET456442
CMAQ397948 CMAQ_0020
CKOR374847 KCR_1354
CHOM360107 CHAB381_1113
CGLU196627 CG0651
CFEL264202
CCUR360105
CCON360104
CCHL340177 CAG_1484
CCAV227941
CABO218497
BXEN266265 BXE_B2951
BTUR314724 BT0169
BLON206672 BL1800
BHER314723 BH0169
BGAR290434 BG0168
BCLA66692 ABC0173
BBUR224326 BB_0169
BAFZ390236 BAPKO_0171
AYEL322098
AURANTIMONAS
APHA212042 APH_0450
APER272557
AMAR234826 AM731
ALAI441768
AFUL224325 AF_2242


Organism features enriched in list (features available for 154 out of the 164 orgs in the list)
Feature    Pvalue       Num occurrences in list  Total num occurrences  
Arrangment:Aggregates 0.001617079
Arrangment:Chains 0.00044921292
Arrangment:Pairs 1.377e-611112
Arrangment:Singles 0.003086989286
Disease:Pharyngitis 0.000020788
Disease:Tularemia 0.001225355
Disease:bronchitis_and_pneumonitis 0.000020788
Endospores:No 0.000036176211
Endospores:Yes 0.0002693453
GC_Content_Range4:0-40 5.951e-986213
GC_Content_Range4:60-100 5.559e-1012145
GC_Content_Range7:0-30 4.369e-72847
GC_Content_Range7:30-40 0.001207958166
GC_Content_Range7:60-70 1.439e-812134
Genome_Size_Range5:0-2 1.171e-33100155
Genome_Size_Range5:4-6 1.004e-207184
Genome_Size_Range5:6-10 5.092e-6147
Genome_Size_Range9:0-1 1.371e-72027
Genome_Size_Range9:1-2 2.116e-2380128
Genome_Size_Range9:3-4 0.0004861977
Genome_Size_Range9:4-5 7.442e-9596
Genome_Size_Range9:5-6 9.998e-11288
Gram_Stain:Gram_Neg 0.000238070333
Gram_Stain:Gram_Pos 6.182e-718150
Habitat:Aquatic 0.00001394191
Habitat:Host-associated 0.009158565206
Habitat:Multiple 5.997e-1117178
Habitat:Specialized 0.00012132653
Habitat:Terrestrial 0.0006586131
Motility:No 0.003163752151
Motility:Yes 0.000567354267
Optimal_temp.:85 0.004729744
Oxygen_Req:Anaerobic 9.320e-645102
Oxygen_Req:Facultative 5.409e-827201
Shape:Irregular_coccus 7.512e-111717
Shape:Oval 0.001225355
Shape:Pleomorphic 0.004886268
Shape:Rod 9.825e-1158347
Shape:Sphere 1.293e-71619
Temp._range:Hyperthermophilic 1.535e-71823
Temp._range:Mesophilic 0.0000952109473
Temp._range:Thermophilic 0.00566711635



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ORGANISMS ENRICHED FOR GROUP:




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ORGANISMS DEPLETED FOR GROUP:




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PHYLOGENETIC PROFILE SIMILARITY WITH KNOWN PATHWAYS:

Pathways or complexes with absolute value of Pearson coefficient with respect to candidate larger than 0.4 are listed below
The candidate is assumed to exist in orgs listed in section List of organisms containing most genes from the group


Pathway or complex  # Orgs containing it  # of those orgs also containing candidate  Pearson Coeff  
AST-PWY (arginine degradation II (AST pathway))1201020.6727
GLYCOCAT-PWY (glycogen degradation I)2461440.6202
PWY0-1241 (ADP-L-glycero-β-D-manno-heptose biosynthesis)2181340.6129
COBALSYN-PWY (adenosylcobalamin salvage from cobinamide I)1951220.5809
PWY-5111 (CMP-KDO biosynthesis II (from D-arabinose 5-phosphate))3001540.5801
PWY-4041 (γ-glutamyl cycle)2791460.5627
PWY-5918 (heme biosynthesis I)2721440.5625
PWY-1269 (CMP-KDO biosynthesis I)3251550.5410
PWY4FS-7 (phosphatidylglycerol biosynthesis I (plastidic))2911460.5385
PWY0-1319 (CDP-diacylglycerol biosynthesis II)2961470.5360
PWY-5755 (4-hydroxybenzoate biosynthesis II (bacteria and fungi))81690.5341
HEME-BIOSYNTHESIS-II (heme biosynthesis from uroporphyrinogen-III I)2861440.5336
KDO-LIPASYN-PWY (KDO2-lipid A biosynthesis I)2251260.5334
PHOSLIPSYN-PWY (phospholipid biosynthesis I)2901450.5330
GLUTATHIONESYN-PWY (glutathione biosynthesis)3391570.5313
LIPA-CORESYN-PWY (Lipid A-core biosynthesis)1761090.5309
PWY-5386 (methylglyoxal degradation I)3051470.5187
PWY-5148 (acyl-CoA hydrolysis)2271230.5054
NAGLIPASYN-PWY (lipid IVA biosynthesis)3481550.5011
3-HYDROXYPHENYLACETATE-DEGRADATION-PWY (4-hydroxyphenylacetate degradation)149950.4979
ECASYN-PWY (enterobacterial common antigen biosynthesis)1911090.4881
GLUCONSUPER-PWY (D-gluconate degradation)2291210.4853
PWY0-981 (taurine degradation IV)106760.4849
TYRFUMCAT-PWY (tyrosine degradation I)1841060.4833
PWY-5913 (TCA cycle variation IV)3011410.4820
LIPASYN-PWY (phospholipases)2121140.4727
ENTNER-DOUDOROFF-PWY (Entner-Doudoroff pathway I)2491250.4698
GLYCOLYSIS-E-D (superpathway of glycolysis and Entner-Doudoroff)2491250.4698
PWY-5857 (ubiquinone-10 biosynthesis (prokaryotic))1831040.4698
GALACTITOLCAT-PWY (galactitol degradation)73590.4667
GLUCARDEG-PWY (D-glucarate degradation I)152920.4622
PWY-3162 (tryptophan degradation V (side chain pathway))94680.4577
PWY-5855 (ubiquinone-7 biosynthesis (prokaryotic))1911050.4560
P601-PWY (D-camphor degradation)95680.4531
PWY0-1182 (trehalose degradation II (trehalase))70560.4491
PWY0-1329 (succinate to cytochrome bo oxidase electron transfer)96670.4384
PWY0-845 (superpathway of pyridoxal 5'-phosphate biosynthesis and salvage)3291420.4376
PWY0-1299 (arginine dependent acid resistance)1991050.4349
UBISYN-PWY (ubiquinol-8 biosynthesis (prokaryotic))3981560.4287
PWY-5856 (ubiquinone-9 biosynthesis (prokaryotic))2551210.4266
POLYISOPRENSYN-PWY (polyisoprenoid biosynthesis (E. coli))116740.4252
PWY0-541 (cyclopropane fatty acid (CFA) biosynthesis)3001330.4247
SULFATE-CYS-PWY (superpathway of sulfate assimilation and cysteine biosynthesis)3651480.4205
DAPLYSINESYN-PWY (lysine biosynthesis I)3421420.4147
GLUCARGALACTSUPER-PWY (superpathway of D-glucarate and D-galactarate degradation)135800.4126
LPSSYN-PWY (superpathway of lipopolysaccharide biosynthesis)91620.4090
P344-PWY (acrylonitrile degradation)2101050.4073
P184-PWY (protocatechuate degradation I (meta-cleavage pathway))94630.4060
KDOSYN-PWY (KDO transfer to lipid IVA I)180950.4049
CHOLINE-BETAINE-ANA-PWY (choline degradation I)135790.4036
BETSYN-PWY (glycine betaine biosynthesis I (Gram-negative bacteria))138800.4026
PWY0-1335 (NADH to cytochrome bo oxidase electron transfer)112700.4022
PWY-5194 (siroheme biosynthesis)3121330.4021
PYRIDOXSYN-PWY (pyridoxal 5'-phosphate biosynthesis I)4221570.4006



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PAIRWISE GENOME CONTEXT SCORE MATRIX:

  EG11345   EG11314   EG11111   EG10504   EG10156   
G64630.9991230.9987380.9997020.9994340.999953
EG113450.9996640.9988240.9989520.999054
EG113140.998540.9985560.998599
EG111110.9991450.999609
EG105040.999507
EG10156



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PAIRWISE BLAST SCORES:

  G6463   EG11345   EG11314   EG11111   EG10504   EG10156   
G64630.0f0-----
EG11345-0.0f0----
EG11314--0.0f0---
EG11111---0.0f0--
EG10504----0.0f0-
EG10156-----0.0f0



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PATHWAYS OR PROTEIN COMPLEX MATCHES IN TARGET ORG:

For each case, all genes involved in the pathway or complex are listed. For each gene we list: a tag indicating whether the gene is part of the candidate list or not, the average and the minimum scores of the gene to the candidate list, the gene name, and its product names.



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GENOME CONTEXT INFORMATION:

Each row corresponds to a replicon in an organism, each column to a gene in the candidate. The second column indicates whether the organims was included in the list used to compute the genome context scores or not. Some organisms are not included because they are phylogenetically too similar to others already in the list.
The number in the matrix indicate the position of the homolog of the gene in the replicon. All numbers are relative to the smaller one, which is assigned a position of zero. Two columns with the same number indicate that the two genes matched the same gene in that organism.

Genome browser links for gene clusters

The links below opens a genome browser BioCyc page for each cluster of genes in the target genome. These pages shows the central gene of the cluster in the target genome and its best homolog in the reference genomes, for the genomes that contain homologs for at least 75% of the genes in the group. Only one genome per phylogenetic cluster of organisms is shown, to keep the list smaller.

EG10156 EG10504 EG11111 G6463 (centered at EG10156)
EG11314 EG11345 (centered at EG11345)


ORG:REPLICON:CIRC?\GENE  IN REF LIST  G6463   EG11345   EG11314   EG11111   EG10504   EG10156   
279/623124/623407/623216/623410/623363/623
AAEO224324:0:Tyes--0--484
AAUR290340:2:Tyes--3651987-0
AAVE397945:0:Tyes1-1404--0
ABAC204669:0:Tyes--1715295902341
ABAU360910:0:Tyes2036-2092203702033
ABOR393595:0:Tyes1110101312
ABUT367737:0:Tyes1----0
ACAU438753:0:Tyes0----1
ACEL351607:0:Tyes1469---1090
ACRY349163:8:Tyes0-479-1481
ADEH290397:0:Tyes1-322200-0
AEHR187272:0:Tyes90940-8889
AFER243159:0:Tyes174913620168319111750
AFUL224325:0:Tyes--0---
AHYD196024:0:Tyes43510434437436
AMAR234826:0:Tyes-----0
AMAR329726:9:Tyes--444-0-
AMET293826:0:Tyes---02830-
ANAE240017:0:Tyes--2112-01560
AORE350688:0:Tyes---1568600
APHA212042:0:Tyes-----0
APLE416269:0:Tyes-10-401-
APLE434271:0:Tno-10-412-
ASAL382245:5:Tyes102010102110181019
ASP1667:3:Tyes--3903306-0
ASP232721:2:Tyes0-2149--1
ASP62928:0:Tyes246-02472540245
ASP62977:0:Tyes853714713-0854
ASP76114:2:Tyes1790-01792-1789
AVAR240292:3:Tyes----5720
BABO262698:1:Tno296-0--295
BAFZ390236:2:Fyes----0-
BAMB339670:3:Tno2343-28412002342
BAMB398577:3:Tno2171-293217202170
BAMY326423:0:Tyes--572-530
BANT260799:0:Tno--227-520
BANT261594:2:Tno--189-520
BANT568206:2:Tyes--200-510
BANT592021:2:Tno--200-510
BAPH198804:0:Tyes--021547-
BAPH372461:0:Tyes---1100-
BBAC264462:0:Tyes1-625--0
BBAC360095:0:Tyes0-258--1
BBRO257310:0:Tyes1984-1917198301987
BBUR224326:21:Fno----0-
BCAN483179:1:Tno318-0--317
BCEN331271:2:Tno1751-0175225851750
BCEN331272:3:Tyes2146-296214702145
BCER226900:1:Tyes--221-500
BCER288681:0:Tno--224-510
BCER315749:1:Tyes--181-500
BCER405917:1:Tyes--228-520
BCER572264:1:Tno--195-510
BCIC186490:0:Tyes--153059-
BCLA66692:0:Tyes----0-
BFRA272559:1:Tyes--0-193-
BFRA295405:0:Tno--0-156-
BGAR290434:2:Fyes----0-
BHAL272558:0:Tyes--501-0-
BHEN283166:0:Tyes0----707
BHER314723:0:Fyes----0-
BJAP224911:0:Fyes3773----0
BLIC279010:0:Tyes--571455520
BLON206672:0:Tyes--0---
BMAL243160:1:Tno0-1514723051
BMAL320388:1:Tno214-02132726215
BMAL320389:1:Tyes0-464100913171
BMEL224914:1:Tno0-310--1
BMEL359391:1:Tno286-0--285
BOVI236:1:Tyes261-0--260
BPAR257311:0:Tno2421-2354242002424
BPER257313:0:Tyes3-12048080
BPET94624:0:Tyes3-69423040
BPSE272560:1:Tyes0-2045219623101
BPSE320372:1:Tno0-2419259427451
BPSE320373:1:Tno0-2350253926651
BPUM315750:0:Tyes--495-0-
BQUI283165:0:Tyes0-36--354
BSP107806:2:Tyes-0122451-
BSP36773:2:Tyes2429-288243002428
BSP376:0:Tyes1----0
BSUB:0:Tyes--612-550
BSUI204722:1:Tyes314-0--313
BSUI470137:1:Tno322-0--321
BTHA271848:1:Tno0-451212722351
BTHE226186:0:Tyes--3033-18450
BTHU281309:1:Tno--178-510
BTHU412694:1:Tno--211-500
BTRI382640:1:Tyes0----1
BTUR314724:0:Fyes----0-
BVIE269482:7:Tyes2228-280222902227
BWEI315730:4:Tyes--2363513520
BXEN266265:1:Tyes---0--
CACE272562:1:Tyes1011--023061012
CAULO:0:Tyes1620----0
CBEI290402:0:Tyes3900---03899
CBLO203907:0:Tyes--5-0-
CBLO291272:0:Tno--6620-
CBOT36826:1:Tno----054
CBOT441770:0:Tyes----054
CBOT441771:0:Tno----055
CBOT441772:1:Tno----054
CBOT498213:1:Tno----054
CBOT508765:1:Tyes----0453
CBOT515621:2:Tyes----054
CBOT536232:0:Tno----054
CBUR227377:1:Tyes--0-347348
CBUR360115:1:Tno--0-198199
CBUR434922:2:Tno--0-377378
CCHL340177:0:Tyes-----0
CDES477974:0:Tyes----680
CDIF272563:1:Tyes---1363720
CDIP257309:0:Tyes---02181655
CEFF196164:0:Fyes----02094
CFET360106:0:Tyes1----0
CGLU196627:0:Tyes----0-
CHOM360107:1:Tyes0-----
CHUT269798:0:Tyes--0-1548-
CHYD246194:0:Tyes--0-11811239
CJAP155077:0:Tyes7701787576
CJEI306537:0:Tyes---2020-
CJEJ192222:0:Tyes1044-0-15121045
CJEJ195099:0:Tno1188-0-16841189
CJEJ354242:2:Tyes1030-0-14731031
CJEJ360109:0:Tyes548-0-1796547
CJEJ407148:0:Tno1060-0-15071061
CKLU431943:1:Tyes2070---02069
CKOR374847:0:Tyes--0---
CMAQ397948:0:Tyes--0---
CMIC31964:2:Tyes--264812420-
CMIC443906:2:Tyes--13680999-
CNOV386415:0:Tyes----510
CPER195102:1:Tyes----10060
CPER195103:0:Tno----9510
CPER289380:3:Tyes----9040
CPHY357809:0:Tyes---03058-
CPSY167879:0:Tyes1181251261190117
CRUT413404:0:Tyes1570230-99156
CSAL290398:0:Tyes7877917920785786
CSP501479:7:Fyes-----0
CSP501479:8:Fyes0-2266---
CSP78:2:Tyes0----1
CTEP194439:0:Tyes--788--0
CTET212717:0:Tyes-----0
CVES412965:0:Tyes-0187-77120
CVIO243365:0:Tyes1-16805142
DARO159087:0:Tyes2776-2972277502777
DDES207559:0:Tyes1---16980
DETH243164:0:Tyes-----0
DGEO319795:1:Tyes779-0--780
DHAF138119:0:Tyes--3477-01198
DNOD246195:0:Tyes28039-54627
DOLE96561:0:Tyes1764-1126-01763
DPSY177439:2:Tyes1--752700
DRAD243230:3:Tyes0----2
DRED349161:0:Tyes--2201-630
DSHI398580:5:Tyes--0--1104
DSP216389:0:Tyes-----0
DSP255470:0:Tno-----0
DVUL882:1:Tyes1581---01582
ECAN269484:0:Tyes-----0
ECAR218491:0:Tyes21401216210213
ECHA205920:0:Tyes-----0
ECOL199310:0:Tno1474473042
ECOL316407:0:Tno1252251042
ECOL331111:6:Tno1328327032
ECOL362663:0:Tno1231230042
ECOL364106:1:Tno23763750143
ECOL405955:2:Tyes0260259--1
ECOL409438:6:Tyes1263262052
ECOL413997:0:Tno1247246042
ECOL439855:4:Tno28201283242281
ECOL469008:0:Tno24801249245247
ECOL481805:0:Tno24401245241-
ECOL585034:0:Tno1250249052
ECOL585035:0:Tno1236235092
ECOL585055:0:Tno1322321042
ECOL585056:2:Tno1302301052
ECOL585057:0:Tno26601268262265
ECOL585397:0:Tno14334320112
ECOL83334:0:Tno1648647042
ECOLI:0:Tno1253252042
ECOO157:0:Tno170570401102
EFAE226185:3:Tyes--19995050-
EFER585054:1:Tyes1761762042
ELIT314225:0:Tyes0----605
ERUM254945:0:Tyes-----0
ERUM302409:0:Tno-----0
ESP42895:1:Tyes12502490102
FALN326424:0:Tyes858-590904795922
FJOH376686:0:Tyes0-1507---
FMAG334413:1:Tyes----01392
FNOD381764:0:Tyes---13917720
FNUC190304:0:Tyes----0-
FPHI484022:1:Tyes----0-
FRANT:0:Tno----0-
FSP106370:0:Tyes612-41210353-
FSP1855:0:Tyes5391-166306-0
FSUC59374:0:Tyes-----0
FTUL351581:0:Tno----0-
FTUL393011:0:Tno----0-
FTUL393115:0:Tyes----0-
FTUL401614:0:Tyes----0-
FTUL418136:0:Tno----0-
FTUL458234:0:Tno----0-
GBET391165:0:Tyes619-628-0773
GFOR411154:0:Tyes--0-1726-
GKAU235909:1:Tyes----0-
GMET269799:1:Tyes--6900576-
GOXY290633:5:Tyes0-1682-3941
GSUL243231:0:Tyes--104501162-
GTHE420246:1:Tyes--108-0-
GURA351605:0:Tyes--0193680-
GVIO251221:0:Tyes337---0-
HACI382638:1:Tyes0-----
HARS204773:0:Tyes2008-0200926782007
HAUR316274:2:Tyes0-43---
HCHE349521:0:Tyes710698
HDUC233412:0:Tyes-11211120-0-
HHAL349124:0:Tyes138513890-13831384
HHEP235279:0:Tyes1----0
HINF281310:0:Tyes-77789160-
HINF374930:0:Tyes-154815477950-
HINF71421:0:Tno-88898680-
HMAR272569:8:Tyes--0---
HMOD498761:0:Tyes--1781-580
HMUK485914:1:Tyes--0---
HNEP81032:0:Tyes0---3211
HPY:0:Tno0-----
HPYL357544:1:Tyes0-----
HPYL85963:0:Tno0-----
HSAL478009:4:Tyes--0---
HSOM205914:1:Tyes-8828811490-
HSOM228400:0:Tno-01926714-
HSP64091:2:Tno--0---
HWAL362976:1:Tyes--0---
IHOS453591:0:Tyes--0---
ILOI283942:0:Tyes2661662301
JSP290400:1:Tyes2881----0
JSP375286:0:Tyes2191-0219230702190
KPNE272620:2:Tyes519310519251952169
KRAD266940:2:Fyes--94316150904
LACI272621:0:Tyes--1534-0-
LBIF355278:2:Tyes1---930
LBIF456481:2:Tno1----0
LBOR355276:1:Tyes812---0813
LBOR355277:1:Tno1---6500
LBRE387344:2:Tyes--0-13521384
LCAS321967:1:Tyes--0-1323-
LCHO395495:0:Tyes1-2473022902
LDEL321956:0:Tyes--830-0-
LDEL390333:0:Tyes--770-0-
LGAS324831:0:Tyes--78-0-
LHEL405566:0:Tyes--1343-0-
LINN272626:1:Tno----0-
LINT189518:1:Tyes1354---01355
LINT267671:1:Tno1---10140
LINT363253:3:Tyes0-380--1
LJOH257314:0:Tyes--87-0-
LLAC272622:5:Tyes--153302076-
LLAC272623:0:Tyes--147301904-
LMES203120:1:Tyes--113516040-
LMON169963:0:Tno----0-
LMON265669:0:Tyes----0-
LPLA220668:0:Tyes--1842-0721
LPNE272624:0:Tno390-37401341391
LPNE297245:1:Fno382-36601253383
LPNE297246:1:Fyes384-36801237385
LPNE400673:0:Tno1243-1259167201242
LREU557436:0:Tyes--0--1411
LSAK314315:0:Tyes--7940988-
LSPH444177:1:Tyes----0-
LWEL386043:0:Tyes----0-
LXYL281090:0:Tyes--396-0-
MABS561007:1:Tyes---032993792
MAEO419665:0:Tyes--0---
MAER449447:0:Tyes-----0
MAQU351348:2:Tyes16720-
MAVI243243:0:Tyes---03507-
MBOV233413:0:Tno---1810-
MBOV410289:0:Tno---1800-
MCAP243233:0:Tyes149101487-14931492
MEXT419610:0:Tyes0----1
MFLA265072:0:Tyes208-151518360207
MGIL350054:3:Tyes---0360539
MHUN323259:0:Tyes--0---
MJAN243232:2:Tyes--0---
MKAN190192:0:Tyes--0---
MLEP272631:0:Tyes---01098-
MLOT266835:2:Tyes478-0--2614
MMAG342108:0:Tyes0-1930-22171
MMAR267377:0:Tyes--0---
MMAR394221:0:Tyes248-0--249
MMAR426368:0:Tyes--0---
MMAR444158:0:Tyes--0---
MPET420662:1:Tyes1-116229600
MSED399549:0:Tyes--0---
MSME246196:0:Tyes---45970-
MSP164756:1:Tno---11910-
MSP164757:0:Tno---11890-
MSP189918:2:Tyes---12100-
MSP266779:3:Tyes88-0--1713
MSP400668:0:Tyes268301
MSP409:2:Tyes0----1
MSTA339860:0:Tyes--0---
MSUC221988:0:Tyes-10833376-
MTBCDC:0:Tno---2040-
MTBRV:0:Tno---1870-
MTHE187420:0:Tyes--0---
MTHE264732:0:Tyes--0-370-
MTHE349307:0:Tyes--0---
MTUB336982:0:Tno---1780-
MTUB419947:0:Tyes---1850-
MVAN350058:0:Tyes---0390-
MXAN246197:0:Tyes5174-1356025525175
NARO279238:0:Tyes437-1255-10020
NEUR228410:0:Tyes1324-1549132301325
NEUT335283:2:Tyes1610-016091631611
NFAR247156:2:Tyes---047750
NGON242231:0:Tyes1-1181212880
NHAM323097:2:Tyes1----0
NMEN122586:0:Tno655-1186560654
NMEN122587:0:Tyes889-20038900888
NMEN272831:0:Tno575-1265760574
NMEN374833:0:Tno1-1052211790
NMUL323848:3:Tyes1444-1438144301445
NOCE323261:1:Tyes391065-564390
NPHA348780:2:Tyes--0---
NSEN222891:0:Tyes--0--59
NSP103690:6:Tyes----18940
NSP35761:1:Tyes---3890-
NSP387092:0:Tyes143---0144
NWIN323098:0:Tyes1-476--0
OANT439375:5:Tyes0-363--1
OCAR504832:0:Tyes0----2
OIHE221109:0:Tyes--678-480
PABY272844:0:Tyes--0---
PAER178306:0:Tyes--0---
PAER208963:0:Tyes8207109
PAER208964:0:Tno2810301
PARC259536:0:Tyes256-0611163255
PARS340102:0:Tyes--0---
PATL342610:0:Tyes278301
PCAR338963:0:Tyes860-1247-0859
PCRY335284:1:Tyes528-0983419527
PDIS435591:0:Tyes--2625-12600
PENT384676:0:Tyes710698
PFLU205922:0:Tyes289301
PFLU216595:1:Tyes289301
PFLU220664:0:Tyes289301
PFUR186497:0:Tyes--0---
PGIN242619:0:Tyes--0-682-
PHAL326442:1:Tyes3301343132
PHOR70601:0:Tyes--0---
PING357804:0:Tyes0213212-21
PINT246198:1:Tyes--110-0-
PISL384616:0:Tyes--0---
PLUM243265:0:Fyes112241225032
PLUT319225:0:Tyes-----0
PMAR167539:0:Tyes-----0
PMAR167540:0:Tyes-----0
PMAR167555:0:Tyes-----0
PMAR59920:0:Tno-----0
PMAR74546:0:Tyes-----0
PMAR74547:0:Tyes-----0
PMEN399739:0:Tyes2810301
PMOB403833:0:Tyes--0--149
PMUL272843:1:Tyes-136913700550-
PNAP365044:8:Tyes0-1991--1
PPEN278197:0:Tyes--0-147-
PPRO298386:2:Tyes610587
PPUT160488:0:Tno289301
PPUT351746:0:Tyes710698
PPUT76869:0:Tno289301
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